Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98949.t1 | XP_003589664.1 | 75.7 | 144 | 28 | 2 | 1 | 138 | 1 | 143 | 4.10E-47 | 198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98949.t1 | G7IA04 | 75.7 | 144 | 28 | 2 | 1 | 138 | 1 | 143 | 3.0e-47 | 198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene98949 | 0.814673 | 1.37E-51 | -1.69E-46 |
| MS.gene049171 | MS.gene98949 | 0.877185 | 7.69E-69 | -1.69E-46 |
| MS.gene049173 | MS.gene98949 | 0.806066 | 9.85E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene98949 | 0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene98949 | 0.84751 | 1.10E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene98949 | 0.86196 | 7.10E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene98949 | 0.835383 | 1.73E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene98949 | 0.827798 | 1.28E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene98949 | 0.837285 | 5.69E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene98949 | 0.818124 | 2.31E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene98949 | 0.842633 | 2.30E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene98949 | 0.83259 | 8.67E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene98949 | 0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene98949 | 0.812912 | 3.34E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene98949 | 0.814552 | 1.45E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene98949 | 0.84876 | 4.99E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene98949 | 0.808318 | 3.28E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene98949 | 0.867033 | 1.84E-65 | -1.69E-46 |
| MS.gene050612 | MS.gene98949 | 0.831773 | 1.38E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene98949 | 0.849664 | 2.80E-60 | -1.69E-46 |
| MS.gene050747 | MS.gene98949 | 0.830015 | 3.73E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene98949 | 0.81512 | 1.09E-51 | -1.69E-46 |
| MS.gene050781 | MS.gene98949 | 0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene98949 | 0.801596 | 8.36E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene98949 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene98949 | 0.826314 | 2.90E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene98949 | 0.82189 | 3.17E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene98949 | 0.801698 | 7.96E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene98949 | 0.831133 | 1.98E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene98949 | 0.806335 | 8.65E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene98949 | 0.820114 | 8.14E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene98949 | 0.832173 | 1.10E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene98949 | 0.807473 | 4.97E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene98949 | 0.82372 | 1.19E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene98949 | 0.820164 | 7.93E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene98949 | 0.838117 | 3.48E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene98949 | 0.81078 | 9.72E-51 | -1.69E-46 |
| MS.gene051973 | MS.gene98949 | -0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene98949 | 0.830766 | 2.44E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene98949 | 0.800988 | 1.11E-48 | -1.69E-46 |
| MS.gene052486 | MS.gene98949 | 0.811422 | 7.06E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene98949 | 0.821488 | 3.93E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene98949 | 0.845605 | 3.66E-59 | -1.69E-46 |
| MS.gene052505 | MS.gene98949 | 0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene98949 | 0.834829 | 2.39E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene98949 | 0.848482 | 5.96E-60 | -1.69E-46 |
| MS.gene052825 | MS.gene98949 | 0.850016 | 2.23E-60 | -1.69E-46 |
| MS.gene052870 | MS.gene98949 | 0.837595 | 4.74E-57 | -1.69E-46 |
| MS.gene052872 | MS.gene98949 | 0.852829 | 3.57E-61 | -1.69E-46 |
| MS.gene053203 | MS.gene98949 | 0.834391 | 3.08E-56 | -1.69E-46 |
| MS.gene053207 | MS.gene98949 | 0.818965 | 1.49E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene98949 | 0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene98949 | 0.827973 | 1.16E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene98949 | 0.819416 | 1.17E-52 | -1.69E-46 |
| MS.gene053480 | MS.gene98949 | 0.848533 | 5.77E-60 | -1.69E-46 |
| MS.gene053579 | MS.gene98949 | 0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene98949 | 0.828111 | 1.08E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene98949 | 0.876914 | 9.56E-69 | -1.69E-46 |
| MS.gene054343 | MS.gene98949 | 0.835434 | 1.68E-56 | -1.69E-46 |
| MS.gene054344 | MS.gene98949 | 0.829774 | 4.26E-55 | -1.69E-46 |
| MS.gene054408 | MS.gene98949 | 0.838529 | 2.72E-57 | -1.69E-46 |
| MS.gene054600 | MS.gene98949 | 0.838577 | 2.65E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene98949 | 0.838682 | 2.49E-57 | -1.69E-46 |
| MS.gene054706 | MS.gene98949 | -0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene05470 | MS.gene98949 | 0.87602 | 1.95E-68 | -1.69E-46 |
| MS.gene054884 | MS.gene98949 | -0.820911 | 5.34E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene98949 | 0.840639 | 7.70E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene98949 | 0.827144 | 1.84E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene98949 | 0.807721 | 4.40E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene98949 | 0.846998 | 1.53E-59 | -1.69E-46 |
| MS.gene055370 | MS.gene98949 | 0.81391 | 2.02E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene98949 | 0.864385 | 1.26E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene98949 | 0.866147 | 3.53E-65 | -1.69E-46 |
| MS.gene055748 | MS.gene98949 | 0.845206 | 4.69E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene98949 | 0.816721 | 4.78E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene98949 | 0.837182 | 6.04E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene98949 | 0.841072 | 5.93E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene98949 | 0.823127 | 1.64E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene98949 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene98949 | 0.835302 | 1.82E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene98949 | 0.816102 | 6.58E-52 | -1.69E-46 |
| MS.gene056610 | MS.gene98949 | 0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene98949 | 0.83343 | 5.36E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene98949 | 0.841357 | 4.99E-58 | -1.69E-46 |
| MS.gene056877 | MS.gene98949 | 0.804532 | 2.06E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene98949 | 0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene98949 | 0.851943 | 6.38E-61 | -1.69E-46 |
| MS.gene057196 | MS.gene98949 | 0.855959 | 4.45E-62 | -1.69E-46 |
| MS.gene057332 | MS.gene98949 | 0.8237 | 1.20E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene98949 | 0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene98949 | 0.88541 | 8.33E-72 | -1.69E-46 |
| MS.gene057831 | MS.gene98949 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene98949 | -0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene98949 | 0.820314 | 7.32E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene98949 | 0.816516 | 5.31E-52 | -1.69E-46 |
| MS.gene058418 | MS.gene98949 | -0.811821 | 5.78E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene98949 | 0.867283 | 1.53E-65 | -1.69E-46 |
| MS.gene058444 | MS.gene98949 | 0.814852 | 1.25E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene98949 | 0.87139 | 7.09E-67 | -1.69E-46 |
| MS.gene058723 | MS.gene98949 | 0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene98949 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene98949 | 0.872025 | 4.37E-67 | -1.69E-46 |
| MS.gene059022 | MS.gene98949 | 0.840586 | 7.95E-58 | -1.69E-46 |
| MS.gene059023 | MS.gene98949 | 0.889195 | 3.01E-73 | -1.69E-46 |
| MS.gene05912 | MS.gene98949 | 0.823914 | 1.07E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene98949 | 0.873964 | 9.77E-68 | -1.69E-46 |
| MS.gene05934 | MS.gene98949 | 0.844174 | 8.90E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene98949 | 0.868045 | 8.74E-66 | -1.69E-46 |
| MS.gene059718 | MS.gene98949 | 0.842707 | 2.19E-58 | -1.69E-46 |
| MS.gene059756 | MS.gene98949 | 0.868958 | 4.43E-66 | -1.69E-46 |
| MS.gene059801 | MS.gene98949 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene98949 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene98949 | 0.807693 | 4.46E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene98949 | 0.816221 | 6.19E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene98949 | 0.820089 | 8.25E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene98949 | 0.869473 | 3.02E-66 | -1.69E-46 |
| MS.gene06077 | MS.gene98949 | 0.86144 | 1.02E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene98949 | 0.852539 | 4.32E-61 | -1.69E-46 |
| MS.gene060982 | MS.gene98949 | 0.833786 | 4.37E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene98949 | 0.872888 | 2.25E-67 | -1.69E-46 |
| MS.gene061231 | MS.gene98949 | 0.828997 | 6.59E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98949.t1 | MTR_1g031740 | 83.333 | 144 | 17 | 2 | 1 | 138 | 1 | 143 | 1.24e-75 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGGAGAATCTGGGTTT+TGG | 0.221469 | 1.4:-16602414 | None:intergenic |
| GGAGAGTGGCTGGGTGAAAA+TGG | 0.232098 | 1.4:+16602865 | MS.gene98949:CDS |
| GAAGAAGAAGGAGGAGAATC+TGG | 0.270359 | 1.4:-16602421 | None:intergenic |
| TGCTGAAGGCCCTGCGTGTT+GGG | 0.285965 | 1.4:-16603300 | None:intergenic |
| TGGAGGAAGATTGGTTTGTT+TGG | 0.288556 | 1.4:-16602446 | None:intergenic |
| GGTCGACGGGGAAGCTTGTT+TGG | 0.309086 | 1.4:-16602520 | None:intergenic |
| CTGCTGAAGGCCCTGCGTGT+TGG | 0.314819 | 1.4:-16603301 | None:intergenic |
| ATTAGTAATAAGAATGGATT+TGG | 0.315469 | 1.4:-16602380 | None:intergenic |
| TCTCGAGATCTACAAGTCTT+TGG | 0.331857 | 1.4:+16603234 | MS.gene98949:CDS |
| GGAGGAAGATTGGTTTGTTT+GGG | 0.355312 | 1.4:-16602445 | None:intergenic |
| TGCGTGTTGGGTGGTTTGCT+TGG | 0.363451 | 1.4:-16603288 | None:intergenic |
| GACCACGATGGATTTGTTCT+TGG | 0.365556 | 1.4:+16602798 | MS.gene98949:CDS |
| ACCACGATGGATTTGTTCTT+GGG | 0.379690 | 1.4:+16602799 | MS.gene98949:CDS |
| GAGAGTGGCTGGGTGAAAAT+GGG | 0.391269 | 1.4:+16602866 | MS.gene98949:CDS |
| GGTGTTAGTGGAGCGAAATC+TGG | 0.391808 | 1.4:-16602893 | None:intergenic |
| TTGCTACTTACTGGTGTTAG+TGG | 0.404594 | 1.4:-16602905 | None:intergenic |
| CGAAGATGGTGATGGTCGAC+GGG | 0.447807 | 1.4:-16602533 | None:intergenic |
| GAGGGAAACAGGAGAGTGGC+TGG | 0.452230 | 1.4:+16602855 | MS.gene98949:CDS |
| TCAATTTGCATGAGCGAAGA+TGG | 0.459616 | 1.4:-16602547 | None:intergenic |
| GCGTGTTGGGTGGTTTGCTT+GGG | 0.461631 | 1.4:-16603287 | None:intergenic |
| GTCTCATAGTGTTGAGGGAG+AGG | 0.464051 | 1.4:-16603332 | None:intergenic |
| AAGAAGAAGGAGGAGAATCT+GGG | 0.467707 | 1.4:-16602420 | None:intergenic |
| GTTTGTTTGGGTGAAGAAGA+AGG | 0.476332 | 1.4:-16602433 | None:intergenic |
| AGTTGCATTAGTAATAAGAA+TGG | 0.478683 | 1.4:-16602386 | None:intergenic |
| TTCTTGGGACAAGTATTTGA+AGG | 0.485835 | 1.4:+16602814 | MS.gene98949:CDS |
| AAGCAAACCACCCAACACGC+AGG | 0.489944 | 1.4:+16603290 | MS.gene98949:CDS |
| AGTGTTGAGGGAGAGGCAAT+AGG | 0.490057 | 1.4:-16603325 | None:intergenic |
| ATTGAACGTGCCCTTGGCGC+TGG | 0.500974 | 1.4:+16602565 | MS.gene98949:CDS |
| TAGATGTCTCATAGTGTTGA+GGG | 0.510803 | 1.4:-16603337 | None:intergenic |
| ATGCAAATTGAACGTGCCCT+TGG | 0.511985 | 1.4:+16602559 | MS.gene98949:CDS |
| GAGCATGCATACTTGAGGTC+AGG | 0.520818 | 1.4:-16602607 | None:intergenic |
| CTCTGAAGCTACCAGCGCCA+AGG | 0.529782 | 1.4:-16602576 | None:intergenic |
| AGCAAACCACCCAACACGCA+GGG | 0.539603 | 1.4:+16603291 | MS.gene98949:CDS |
| GCGAAGATGGTGATGGTCGA+CGG | 0.545160 | 1.4:-16602534 | None:intergenic |
| CTAGATGTCTCATAGTGTTG+AGG | 0.553465 | 1.4:-16603338 | None:intergenic |
| TCTTGGGACAAGTATTTGAA+GGG | 0.567555 | 1.4:+16602815 | MS.gene98949:CDS |
| TGAAGGCCCTGCGTGTTGGG+TGG | 0.574001 | 1.4:-16603297 | None:intergenic |
| CGACGGGGAAGCTTGTTTGG+AGG | 0.576924 | 1.4:-16602517 | None:intergenic |
| AGAGTGGCTGGGTGAAAATG+GGG | 0.590303 | 1.4:+16602867 | MS.gene98949:CDS |
| TCTGAAGCTACCAGCGCCAA+GGG | 0.590855 | 1.4:-16602575 | None:intergenic |
| TATCTAGTTCAAACACTACA+TGG | 0.602133 | 1.4:+16603258 | MS.gene98949:CDS |
| CTCGAGACAAGCAATGGACG+TGG | 0.602857 | 1.4:-16603218 | None:intergenic |
| TGTTTGGGTGAAGAAGAAGG+AGG | 0.610626 | 1.4:-16602430 | None:intergenic |
| AGGGAAACAGGAGAGTGGCT+GGG | 0.620803 | 1.4:+16602856 | MS.gene98949:CDS |
| GGCGCTGGTAGCTTCAGAGA+CGG | 0.635842 | 1.4:+16602580 | MS.gene98949:CDS |
| AGAGGCAATAGGTCTGCTGA+AGG | 0.636549 | 1.4:-16603314 | None:intergenic |
| GTAGATCTCGAGACAAGCAA+TGG | 0.668961 | 1.4:-16603224 | None:intergenic |
| AGCTGAGGGAAACAGGAGAG+TGG | 0.671817 | 1.4:+16602851 | MS.gene98949:CDS |
| GAAGATGGTGATGGTCGACG+GGG | 0.719959 | 1.4:-16602532 | None:intergenic |
| TGCATGAGCGAAGATGGTGA+TGG | 0.732147 | 1.4:-16602541 | None:intergenic |
| TCCCAAGAACAAATCCATCG+TGG | 0.736351 | 1.4:-16602800 | None:intergenic |
| AGACGTAAAGAAGACCACGA+TGG | 0.745068 | 1.4:+16602786 | MS.gene98949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAACATTATGATGAAT+AGG | + | chr1.4:16602660-16602679 | MS.gene98949:intron | 15.0% |
| !!! | TTGTTTTTTAAATAAGAAAC+TGG | + | chr1.4:16603097-16603116 | MS.gene98949:intron | 15.0% |
| !! | GTTGTAAAAAGTAATAATCT+TGG | + | chr1.4:16603155-16603174 | MS.gene98949:intron | 20.0% |
| !! | TGTTAAAGAGACAAAAAATA+AGG | - | chr1.4:16602946-16602965 | None:intergenic | 20.0% |
| !!! | AGATTATTACTTTTTACAAC+TGG | - | chr1.4:16603155-16603174 | None:intergenic | 20.0% |
| !!! | ATTAGTAATAAGAATGGATT+TGG | - | chr1.4:16602383-16602402 | None:intergenic | 20.0% |
| !!! | CACTTTTAACATTATGAAAT+TGG | - | chr1.4:16602702-16602721 | None:intergenic | 20.0% |
| !!! | TATTTTTTGTCTCTTTAACA+AGG | + | chr1.4:16602946-16602965 | MS.gene98949:intron | 20.0% |
| ! | AGTTGCATTAGTAATAAGAA+TGG | - | chr1.4:16602389-16602408 | None:intergenic | 25.0% |
| ! | ATCAAAATCCAGAATGAAAT+TGG | - | chr1.4:16602727-16602746 | None:intergenic | 25.0% |
| !! | TAATGAAGTAGTAGAGTTTT+TGG | - | chr1.4:16602497-16602516 | None:intergenic | 25.0% |
| ! | ATAAGTGAAGGTTTTTGCTT+TGG | - | chr1.4:16602469-16602488 | None:intergenic | 30.0% |
| ! | TATCTAGTTCAAACACTACA+TGG | + | chr1.4:16603258-16603277 | MS.gene98949:CDS | 30.0% |
| !! | CATGTCTTTTGCTTTGTTAT+AGG | + | chr1.4:16602980-16602999 | MS.gene98949:intron | 30.0% |
| !!! | TTTTTGGAGCTTATAAGTGA+AGG | - | chr1.4:16602481-16602500 | None:intergenic | 30.0% |
| GTTATAGGTGATTATGAGTG+AGG | + | chr1.4:16602995-16603014 | MS.gene98949:intron | 35.0% | |
| TCTTGGGACAAGTATTTGAA+GGG | + | chr1.4:16602815-16602834 | MS.gene98949:CDS | 35.0% | |
| TTCTTGGGACAAGTATTTGA+AGG | + | chr1.4:16602814-16602833 | MS.gene98949:CDS | 35.0% | |
| ! | AAAGTGCTCCAATTTCATTC+TGG | + | chr1.4:16602716-16602735 | MS.gene98949:intron | 35.0% |
| ! | TAGATGTCTCATAGTGTTGA+GGG | - | chr1.4:16603340-16603359 | None:intergenic | 35.0% |
| !!! | TTTTTGCTTTGGAGGAAGAT+TGG | - | chr1.4:16602458-16602477 | None:intergenic | 35.0% |
| AAACAGAGCATGCATACTTG+AGG | - | chr1.4:16602615-16602634 | None:intergenic | 40.0% | |
| AAGAAGAAGGAGGAGAATCT+GGG | - | chr1.4:16602423-16602442 | None:intergenic | 40.0% | |
| CTAGATGTCTCATAGTGTTG+AGG | - | chr1.4:16603341-16603360 | None:intergenic | 40.0% | |
| GTTTGTTTGGGTGAAGAAGA+AGG | - | chr1.4:16602436-16602455 | None:intergenic | 40.0% | |
| TAACACCAGTAAGTAGCAAC+TGG | + | chr1.4:16602909-16602928 | MS.gene98949:intron | 40.0% | |
| TCAATTTGCATGAGCGAAGA+TGG | - | chr1.4:16602550-16602569 | None:intergenic | 40.0% | |
| TCTCGAGATCTACAAGTCTT+TGG | + | chr1.4:16603234-16603253 | MS.gene98949:CDS | 40.0% | |
| ! | ACCACGATGGATTTGTTCTT+GGG | + | chr1.4:16602799-16602818 | MS.gene98949:CDS | 40.0% |
| ! | AGTGAAGGTTTTTGCTTTGG+AGG | - | chr1.4:16602466-16602485 | None:intergenic | 40.0% |
| ! | TTGCTACTTACTGGTGTTAG+TGG | - | chr1.4:16602908-16602927 | None:intergenic | 40.0% |
| !! | GGAGGAAGATTGGTTTGTTT+GGG | - | chr1.4:16602448-16602467 | None:intergenic | 40.0% |
| !! | TGGAGGAAGATTGGTTTGTT+TGG | - | chr1.4:16602449-16602468 | None:intergenic | 40.0% |
| AGACGTAAAGAAGACCACGA+TGG | + | chr1.4:16602786-16602805 | MS.gene98949:CDS | 45.0% | |
| ATGCAAATTGAACGTGCCCT+TGG | + | chr1.4:16602559-16602578 | MS.gene98949:CDS | 45.0% | |
| CAGAAAAAGCTGAGGGAAAC+AGG | + | chr1.4:16602844-16602863 | MS.gene98949:CDS | 45.0% | |
| GAAGAAGAAGGAGGAGAATC+TGG | - | chr1.4:16602424-16602443 | None:intergenic | 45.0% | |
| GACTGTGCAGAAAAAGCTGA+GGG | + | chr1.4:16602837-16602856 | MS.gene98949:CDS | 45.0% | |
| GTAGATCTCGAGACAAGCAA+TGG | - | chr1.4:16603227-16603246 | None:intergenic | 45.0% | |
| TCCCAAGAACAAATCCATCG+TGG | - | chr1.4:16602803-16602822 | None:intergenic | 45.0% | |
| TGTTTGGGTGAAGAAGAAGG+AGG | - | chr1.4:16602433-16602452 | None:intergenic | 45.0% | |
| ! | AAGGAGGAGAATCTGGGTTT+TGG | - | chr1.4:16602417-16602436 | None:intergenic | 45.0% |
| ! | AGGAGGAGAATCTGGGTTTT+GGG | - | chr1.4:16602416-16602435 | None:intergenic | 45.0% |
| ! | CGTTACCAGTTGCTACTTAC+TGG | - | chr1.4:16602917-16602936 | None:intergenic | 45.0% |
| ! | GACCACGATGGATTTGTTCT+TGG | + | chr1.4:16602798-16602817 | MS.gene98949:CDS | 45.0% |
| AGAGGCAATAGGTCTGCTGA+AGG | - | chr1.4:16603317-16603336 | None:intergenic | 50.0% | |
| AGAGTGGCTGGGTGAAAATG+GGG | + | chr1.4:16602867-16602886 | MS.gene98949:CDS | 50.0% | |
| CGAGGCCTTCGCTAAATTGT+AGG | + | chr1.4:16603195-16603214 | MS.gene98949:intron | 50.0% | |
| CGTGGCCTACAATTTAGCGA+AGG | - | chr1.4:16603203-16603222 | None:intergenic | 50.0% | |
| GAGAGTGGCTGGGTGAAAAT+GGG | + | chr1.4:16602866-16602885 | MS.gene98949:CDS | 50.0% | |
| GAGCATGCATACTTGAGGTC+AGG | - | chr1.4:16602610-16602629 | None:intergenic | 50.0% | |
| GGACTGTGCAGAAAAAGCTG+AGG | + | chr1.4:16602836-16602855 | MS.gene98949:CDS | 50.0% | |
| GGTGTTAGTGGAGCGAAATC+TGG | - | chr1.4:16602896-16602915 | None:intergenic | 50.0% | |
| TGCATGAGCGAAGATGGTGA+TGG | - | chr1.4:16602544-16602563 | None:intergenic | 50.0% | |
| ! | AGTGTTGAGGGAGAGGCAAT+AGG | - | chr1.4:16603328-16603347 | None:intergenic | 50.0% |
| ! | GAGACTAGCTGATGAAGACG+AGG | + | chr1.4:16603177-16603196 | MS.gene98949:intron | 50.0% |
| ! | GGAGGAGAATCTGGGTTTTG+GGG | - | chr1.4:16602415-16602434 | None:intergenic | 50.0% |
| ! | GTCTCATAGTGTTGAGGGAG+AGG | - | chr1.4:16603335-16603354 | None:intergenic | 50.0% |
| AAGCAAACCACCCAACACGC+AGG | + | chr1.4:16603290-16603309 | MS.gene98949:CDS | 55.0% | |
| AGCAAACCACCCAACACGCA+GGG | + | chr1.4:16603291-16603310 | MS.gene98949:CDS | 55.0% | |
| AGCTGAGGGAAACAGGAGAG+TGG | + | chr1.4:16602851-16602870 | MS.gene98949:CDS | 55.0% | |
| AGGGAAACAGGAGAGTGGCT+GGG | + | chr1.4:16602856-16602875 | MS.gene98949:CDS | 55.0% | |
| CTCGAGACAAGCAATGGACG+TGG | - | chr1.4:16603221-16603240 | None:intergenic | 55.0% | |
| GGAGAGTGGCTGGGTGAAAA+TGG | + | chr1.4:16602865-16602884 | MS.gene98949:CDS | 55.0% | |
| ! | TCTGAAGCTACCAGCGCCAA+GGG | - | chr1.4:16602578-16602597 | None:intergenic | 55.0% |
| !! | CGAAGATGGTGATGGTCGAC+GGG | - | chr1.4:16602536-16602555 | None:intergenic | 55.0% |
| !! | GAAGATGGTGATGGTCGACG+GGG | - | chr1.4:16602535-16602554 | None:intergenic | 55.0% |
| !! | GCGAAGATGGTGATGGTCGA+CGG | - | chr1.4:16602537-16602556 | None:intergenic | 55.0% |
| !! | GCGTGTTGGGTGGTTTGCTT+GGG | - | chr1.4:16603290-16603309 | None:intergenic | 55.0% |
| !! | TGCGTGTTGGGTGGTTTGCT+TGG | - | chr1.4:16603291-16603310 | None:intergenic | 55.0% |
| ATTGAACGTGCCCTTGGCGC+TGG | + | chr1.4:16602565-16602584 | MS.gene98949:CDS | 60.0% | |
| GAGGGAAACAGGAGAGTGGC+TGG | + | chr1.4:16602855-16602874 | MS.gene98949:CDS | 60.0% | |
| TGCTGAAGGCCCTGCGTGTT+GGG | - | chr1.4:16603303-16603322 | None:intergenic | 60.0% | |
| ! | CGACGGGGAAGCTTGTTTGG+AGG | - | chr1.4:16602520-16602539 | None:intergenic | 60.0% |
| ! | GGTCGACGGGGAAGCTTGTT+TGG | - | chr1.4:16602523-16602542 | None:intergenic | 60.0% |
| !! | CTCTGAAGCTACCAGCGCCA+AGG | - | chr1.4:16602579-16602598 | None:intergenic | 60.0% |
| !! | GGCGCTGGTAGCTTCAGAGA+CGG | + | chr1.4:16602580-16602599 | MS.gene98949:CDS | 60.0% |
| CTGCTGAAGGCCCTGCGTGT+TGG | - | chr1.4:16603304-16603323 | None:intergenic | 65.0% | |
| TGAAGGCCCTGCGTGTTGGG+TGG | - | chr1.4:16603300-16603319 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16602349 | 16603376 | 16602349 | ID=MS.gene98949 |
| chr1.4 | mRNA | 16602349 | 16603376 | 16602349 | ID=MS.gene98949.t1;Parent=MS.gene98949 |
| chr1.4 | exon | 16602349 | 16602617 | 16602349 | ID=MS.gene98949.t1.exon1;Parent=MS.gene98949.t1 |
| chr1.4 | CDS | 16602349 | 16602617 | 16602349 | ID=cds.MS.gene98949.t1;Parent=MS.gene98949.t1 |
| chr1.4 | exon | 16602771 | 16602916 | 16602771 | ID=MS.gene98949.t1.exon2;Parent=MS.gene98949.t1 |
| chr1.4 | CDS | 16602771 | 16602916 | 16602771 | ID=cds.MS.gene98949.t1;Parent=MS.gene98949.t1 |
| chr1.4 | exon | 16603002 | 16603011 | 16603002 | ID=MS.gene98949.t1.exon3;Parent=MS.gene98949.t1 |
| chr1.4 | CDS | 16603002 | 16603011 | 16603002 | ID=cds.MS.gene98949.t1;Parent=MS.gene98949.t1 |
| chr1.4 | exon | 16603217 | 16603376 | 16603217 | ID=MS.gene98949.t1.exon4;Parent=MS.gene98949.t1 |
| chr1.4 | CDS | 16603217 | 16603376 | 16603217 | ID=cds.MS.gene98949.t1;Parent=MS.gene98949.t1 |
| Gene Sequence |
| Protein sequence |
