AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024875.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024875.01.T01 MTR_5g018670 98.784 329 4 0 1 329 1 329 0.0 662
MsG0580024875.01.T01 MTR_8g078870 90.090 333 25 2 1 329 1 329 0.0 607
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024875.01.T01 AT3G50820 77.711 332 69 2 1 328 1 331 0.0 531
MsG0580024875.01.T01 AT5G66570 77.108 332 72 1 1 328 1 332 0.0 525
MsG0580024875.01.T01 AT4G37230 52.047 171 51 6 160 328 1 142 2.06e-39 136

Find 79 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTCTGATACTGATTT+AGG 0.160157 5:+11117565 MsG0580024875.01.T01:CDS
CCAATAACCTCACCAGTTTC+AGG 0.218176 5:-11117526 None:intergenic
TTACCGGGGTTCATCGTTCT+TGG 0.248102 5:+11117351 MsG0580024875.01.T01:CDS
CAATCCATTTCTAAGGCTTT+TGG 0.269832 5:+11115737 MsG0580024875.01.T01:CDS
GCTGATTCTGCTAAAATTGC+AGG 0.285283 5:+11115818 MsG0580024875.01.T01:CDS
AAAACCTACTTAGAAGTAAA+AGG 0.309594 5:+11116944 MsG0580024875.01.T01:CDS
CCTGAAACTGGTGAGGTTAT+TGG 0.332219 5:+11117526 MsG0580024875.01.T01:CDS
GTCGACACAATCCATTTCTA+AGG 0.337483 5:+11115730 MsG0580024875.01.T01:CDS
TTGAAGCACCTCTTCCCTTT+GGG 0.337829 5:-11117375 None:intergenic
GTTGAAGCACCTCTTCCCTT+TGG 0.352982 5:-11117376 None:intergenic
AATGCTGTTGCTTTGCCTGC+TGG 0.375816 5:+11117409 MsG0580024875.01.T01:CDS
TCGTCGAAGGTTAGTCGCTT+TGG 0.379999 5:-11116911 None:intergenic
GAATGGCACACGCTCGCCTC+CGG 0.394351 5:-11117257 None:intergenic
ACGAGTATTGATACCAATCT+TGG 0.394729 5:-11115687 None:intergenic
TACTTCTGAACTGGTGCCTA+AGG 0.395525 5:-11117832 None:intergenic
ACCTTGAATCTTAACATCCT+TGG 0.405144 5:-11117599 None:intergenic
ATGTTAAGATTCAAGGTGTT+TGG 0.408713 5:+11117605 MsG0580024875.01.T01:CDS
TCTGATCCACCTTCAATTGT+TGG 0.408802 5:-11116989 None:intergenic
ATCAAACAGCTGGTAGCGTC+AGG 0.409925 5:+11117289 MsG0580024875.01.T01:CDS
TCTCAGTGCTCTTAACCAAT+TGG 0.419741 5:-11117693 None:intergenic
TAAGCCAAAAGCCTTAGAAA+TGG 0.422060 5:-11115741 None:intergenic
AATGGCACACGCTCGCCTCC+GGG 0.425759 5:-11117256 None:intergenic
ACTCAAAGTAAGCCTGAAAC+TGG 0.431462 5:+11117514 MsG0580024875.01.T01:CDS
CCTTGAATCTTAACATCCTT+GGG 0.435110 5:-11117598 None:intergenic
CCCAAGGATGTTAAGATTCA+AGG 0.446599 5:+11117598 MsG0580024875.01.T01:CDS
GACTCATTCTCCTTCAAGTC+AGG 0.449268 5:+11117010 MsG0580024875.01.T01:CDS
GCTTTGCCTGCTGGTGGAAG+AGG 0.449649 5:+11117418 MsG0580024875.01.T01:CDS
CTCTTCAAGACATAGCTCAT+AGG 0.454505 5:+11115792 MsG0580024875.01.T01:CDS
CTCATGCAACCAACCAAGAT+TGG 0.454658 5:+11115674 MsG0580024875.01.T01:CDS
GGGAAGCCGGACAGCTTTAG+TGG 0.459630 5:+11117310 MsG0580024875.01.T01:CDS
AGCAACAGCATTGTCATAAC+CGG 0.464086 5:-11117398 None:intergenic
GCTGGTAGCGTCAGGGAAGC+CGG 0.464903 5:+11117297 MsG0580024875.01.T01:CDS
TACTTAGAAGTAAAAGGAAC+AGG 0.470248 5:+11116950 MsG0580024875.01.T01:CDS
AAGAGTGCTGCATCATCTAA+AGG 0.475269 5:+11117472 MsG0580024875.01.T01:CDS
AGAGTGCTGCATCATCTAAA+GGG 0.482785 5:+11117473 MsG0580024875.01.T01:CDS
CACCTTCAATTGTTGGACAT+TGG 0.483659 5:-11116982 None:intergenic
AGAGGTGATGAGGAAGAACT+TGG 0.484944 5:+11117436 MsG0580024875.01.T01:CDS
GTCAAATTTGAGGAGAAAGA+TGG 0.491390 5:+11117202 MsG0580024875.01.T01:CDS
AACTCTCCACTAAAGCTGTC+CGG 0.492735 5:-11117316 None:intergenic
AAGGGAAGAGGTGCTTCAAC+CGG 0.493608 5:+11117379 MsG0580024875.01.T01:CDS
TACACGTTGGACGAGATAGA+AGG 0.497333 5:+11117151 MsG0580024875.01.T01:CDS
TGACGGTACTGTCAAATTTG+AGG 0.497537 5:+11117192 MsG0580024875.01.T01:CDS
GCTGTTGCTTTGCCTGCTGG+TGG 0.513141 5:+11117412 MsG0580024875.01.T01:CDS
AACGATGAACCCCGGTAAGA+TGG 0.513352 5:-11117346 None:intergenic
AACCAATGTCCAACAATTGA+AGG 0.514893 5:+11116980 MsG0580024875.01.T01:CDS
TTTGCTCTGGATTTCGTCGA+AGG 0.518361 5:-11116924 None:intergenic
GCTGTGACCGTTCAGCTCCC+CGG 0.518479 5:+11117238 MsG0580024875.01.T01:CDS
CTATGCTAACAAGTGCCCTT+AGG 0.520118 5:+11117816 MsG0580024875.01.T01:three_prime_UTR
TGATGAGGAAGAACTTGGTA+AGG 0.524502 5:+11117441 MsG0580024875.01.T01:CDS
GAATCATAGAACATTTCTGT+TGG 0.530505 5:+11117640 MsG0580024875.01.T01:exon
CTCGCCTCCGGGGAGCTGAA+CGG 0.531568 5:-11117245 None:intergenic
TTTGAAAGTGCTTTGTGTGT+AGG 0.539550 5:-11115543 None:intergenic
TCATCGTTCTTGGACCCAAA+GGG 0.545811 5:+11117361 MsG0580024875.01.T01:CDS
TTCATCGTTCTTGGACCCAA+AGG 0.547197 5:+11117360 MsG0580024875.01.T01:CDS
TCATCACCTCTTCCACCAGC+AGG 0.551226 5:-11117424 None:intergenic
CCGTCAGGAGATACTTCAAA+TGG 0.551998 5:-11117175 None:intergenic
TCAAATTTGACAGTACCGTC+AGG 0.556980 5:-11117190 None:intergenic
TTCTTGGACCCAAAGGGAAG+AGG 0.559306 5:+11117367 MsG0580024875.01.T01:CDS
GTATTGATACCAATCTTGGT+TGG 0.560350 5:-11115683 None:intergenic
TGTTTGATCGTGAAGAGGAA+TGG 0.568461 5:-11117274 None:intergenic
ATTCAGGGAGCAAGTGCTGA+AGG 0.577812 5:+11116884 MsG0580024875.01.T01:intron
ACTTCTGAACTGGTGCCTAA+GGG 0.577965 5:-11117831 None:intergenic
CCTCTTCACGATCAAACAGC+TGG 0.583565 5:+11117279 MsG0580024875.01.T01:CDS
CTGTGAATGAAGTTGGCTCA+AGG 0.591790 5:-11117057 None:intergenic
TTTAGGTGCTAAAGCTCCCA+AGG 0.594637 5:+11117582 MsG0580024875.01.T01:CDS
CCAGCTGTTTGATCGTGAAG+AGG 0.599218 5:-11117279 None:intergenic
GCACCTAAATCAGTATCAGA+AGG 0.614956 5:-11117568 None:intergenic
CAATGTCCAACAATTGAAGG+TGG 0.619654 5:+11116983 MsG0580024875.01.T01:CDS
GACACGCTTGACATACACGT+TGG 0.621522 5:+11117138 MsG0580024875.01.T01:CDS
TACAGAGACAACAAGAGCAG+AGG 0.623762 5:-11115855 None:intergenic
ATGGCACACGCTCGCCTCCG+GGG 0.630522 5:-11117255 None:intergenic
TCAAACAGCTGGTAGCGTCA+GGG 0.646928 5:+11117290 MsG0580024875.01.T01:CDS
AAGTAAGCCTGAAACTGGTG+AGG 0.648410 5:+11117519 MsG0580024875.01.T01:CDS
TCATTCACAGTAAAATCCGA+AGG 0.657373 5:+11117070 MsG0580024875.01.T01:CDS
TGCTGGTGGAAGAGGTGATG+AGG 0.663134 5:+11117426 MsG0580024875.01.T01:CDS
CCATTTGAAGTATCTCCTGA+CGG 0.671662 5:+11117175 MsG0580024875.01.T01:CDS
GGTCCAAGAACGATGAACCC+CGG 0.681928 5:-11117354 None:intergenic
ATAATGCTTAAAATGTCACA+TGG 0.700700 5:+11117755 MsG0580024875.01.T01:three_prime_UTR
GTGACCGTTCAGCTCCCCGG+AGG 0.722824 5:+11117241 MsG0580024875.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAATATAAGCAGAT+CGG - Chr5:11116277-11116296 None:intergenic 15.0%
!! TGATGAGATTATAAAATTAA+TGG - Chr5:11116517-11116536 None:intergenic 15.0%
!! TTATTTAATTAAAGATGACT+TGG - Chr5:11116303-11116322 None:intergenic 15.0%
!!! ACATTTGTCTTATTATTTTA+AGG + Chr5:11117792-11117811 MsG0580024875.01.T01:three_prime_UTR 15.0%
!!! ATAAAATTAATGGACTATTT+AGG - Chr5:11116507-11116526 None:intergenic 15.0%
!!! TAAAAGTTGCTTTTATTTTT+TGG - Chr5:11116010-11116029 None:intergenic 15.0%
!!! ACATCTTGAAACTTTAAAAA+TGG - Chr5:11117896-11117915 None:intergenic 20.0%
!!! TTTTAAATTTCAGATTGTCT+CGG + Chr5:11116551-11116570 MsG0580024875.01.T01:intron 20.0%
! AAAACCTACTTAGAAGTAAA+AGG + Chr5:11116944-11116963 MsG0580024875.01.T01:CDS 25.0%
! ATAATGCTTAAAATGTCACA+TGG + Chr5:11117755-11117774 MsG0580024875.01.T01:three_prime_UTR 25.0%
! CAACATGTTGTAAATTGTAA+TGG - Chr5:11116194-11116213 None:intergenic 25.0%
! CAATAAGAAGAAAAACACTT+TGG + Chr5:11115604-11115623 MsG0580024875.01.T01:five_prime_UTR 25.0%
! CATTACAATTTACAACATGT+TGG + Chr5:11116192-11116211 MsG0580024875.01.T01:intron 25.0%
! CGTGGAATTAATAATATTCA+GGG + Chr5:11116869-11116888 MsG0580024875.01.T01:intron 25.0%
! TCACATACATTAATTGATCT+TGG + Chr5:11116236-11116255 MsG0580024875.01.T01:intron 25.0%
! TCGTGGAATTAATAATATTC+AGG + Chr5:11116868-11116887 MsG0580024875.01.T01:intron 25.0%
! TTTAAATTTCAGATTGTCTC+GGG + Chr5:11116552-11116571 MsG0580024875.01.T01:intron 25.0%
! TTTAACGAAAATTCAAACTC+TGG + Chr5:11116629-11116648 MsG0580024875.01.T01:intron 25.0%
!! GTAAGATTTTTGATAGGATA+AGG - Chr5:11115469-11115488 None:intergenic 25.0%
!!! AAGTTGCTTTTATTATGAAG+CGG + Chr5:11115967-11115986 MsG0580024875.01.T01:intron 25.0%
!!! GTTGTTTTGCAAAATTTACT+AGG - Chr5:11116148-11116167 None:intergenic 25.0%
!!! TCTATTTTTTACTTCTGAAC+TGG - Chr5:11117844-11117863 None:intergenic 25.0%
AATTGTAATGGTGCAAGATT+AGG - Chr5:11116182-11116201 None:intergenic 30.0%
AATTTACAACATGTTGGATC+CGG + Chr5:11116198-11116217 MsG0580024875.01.T01:intron 30.0%
GAATCATAGAACATTTCTGT+TGG + Chr5:11117640-11117659 MsG0580024875.01.T01:exon 30.0%
TAAGAAGAAAAACACTTTGG+TGG + Chr5:11115607-11115626 MsG0580024875.01.T01:five_prime_UTR 30.0%
TACTTAGAAGTAAAAGGAAC+AGG + Chr5:11116950-11116969 MsG0580024875.01.T01:CDS 30.0%
TGATTGACTAATGATTATCG+TGG + Chr5:11116851-11116870 MsG0580024875.01.T01:intron 30.0%
TTCTCGAATAAAATTGCTTC+TGG - Chr5:11116594-11116613 None:intergenic 30.0%
TTTGCTAAACTTAATCACGA+GGG + Chr5:11116702-11116721 MsG0580024875.01.T01:intron 30.0%
! ATGTTAAGATTCAAGGTGTT+TGG + Chr5:11117605-11117624 MsG0580024875.01.T01:CDS 30.0%
! CAAAATCTTTTGACACCAAT+TGG + Chr5:11117678-11117697 MsG0580024875.01.T01:three_prime_UTR 30.0%
! GATTTTACTGTGAATGAAGT+TGG - Chr5:11117067-11117086 None:intergenic 30.0%
! GTGTGAGTAAGATTTTTGAT+AGG - Chr5:11115475-11115494 None:intergenic 30.0%
! TGTTCCTTTTACTTCTAAGT+AGG - Chr5:11116951-11116970 None:intergenic 30.0%
! TTTTGCTAAACTTAATCACG+AGG + Chr5:11116701-11116720 MsG0580024875.01.T01:intron 30.0%
!! ATTGTATTTTCCTGACTTGA+AGG - Chr5:11117023-11117042 None:intergenic 30.0%
!! TTGTCTCGGTTTATTTTTCT+CGG - Chr5:11116037-11116056 None:intergenic 30.0%
!!! AGTTGCTTTTATTATGAAGC+GGG + Chr5:11115968-11115987 MsG0580024875.01.T01:intron 30.0%
!!! AGTTTTTAGTACCATCTTAC+CGG + Chr5:11117335-11117354 MsG0580024875.01.T01:CDS 30.0%
!!! TTTGTGTTTTGAAAATCGAG+CGG - Chr5:11117112-11117131 None:intergenic 30.0%
AACCAATGTCCAACAATTGA+AGG + Chr5:11116980-11116999 MsG0580024875.01.T01:CDS 35.0%
ACCTTGAATCTTAACATCCT+TGG - Chr5:11117602-11117621 None:intergenic 35.0%
CCTTGAATCTTAACATCCTT+GGG - Chr5:11117601-11117620 None:intergenic 35.0%
GGAATTCAAATACCAACACA+CGG + Chr5:11116378-11116397 MsG0580024875.01.T01:intron 35.0%
GTCAAATTTGAGGAGAAAGA+TGG + Chr5:11117202-11117221 MsG0580024875.01.T01:CDS 35.0%
TAAGCCAAAAGCCTTAGAAA+TGG - Chr5:11115744-11115763 None:intergenic 35.0%
TCATTCACAGTAAAATCCGA+AGG + Chr5:11117070-11117089 MsG0580024875.01.T01:CDS 35.0%
! ATGGACTATTTAGGAAGCTA+AGG - Chr5:11116498-11116517 None:intergenic 35.0%
! GCACTTTGATTAAGTTGTCT+CGG - Chr5:11115942-11115923 None:intergenic 35.0%
! GCACTTTGATTAAGTTGTCT+GGG + Chr5:11115923-11115942 MsG0580024875.01.T01:intron 35.0%
! GTATTGATACCAATCTTGGT+TGG - Chr5:11115686-11115705 None:intergenic 35.0%
!! AACAGAGTACTCTGTTTTGA+TGG - Chr5:11115503-11115522 None:intergenic 35.0%
!! ACGAGTATTGATACCAATCT+TGG - Chr5:11115690-11115709 None:intergenic 35.0%
!! TGAAAATAACTCTAGAGCCT+AGG - Chr5:11116736-11116755 None:intergenic 35.0%
!! TTTGAAAGTGCTTTGTGTGT+AGG - Chr5:11115546-11115565 None:intergenic 35.0%
!! TTTTTAGTACCATCTTACCG+GGG + Chr5:11117337-11117356 MsG0580024875.01.T01:CDS 35.0%
!!! CAATCCATTTCTAAGGCTTT+TGG + Chr5:11115737-11115756 MsG0580024875.01.T01:CDS 35.0%
!!! GTGAATGTGCGTATTTTTTC+CGG - Chr5:11116220-11116239 None:intergenic 35.0%
!!! GTTTTTAGTACCATCTTACC+GGG + Chr5:11117336-11117355 MsG0580024875.01.T01:CDS 35.0%
!!! TTGTGTTTTGAAAATCGAGC+GGG - Chr5:11117111-11117130 None:intergenic 35.0%
ACTCAAAGTAAGCCTGAAAC+TGG + Chr5:11117514-11117533 MsG0580024875.01.T01:CDS 40.0%
AGCAACAGCATTGTCATAAC+CGG - Chr5:11117401-11117420 None:intergenic 40.0%
ATTTCACATAAGCCGTGTGT+TGG - Chr5:11116393-11116412 None:intergenic 40.0%
CAATGTCCAACAATTGAAGG+TGG + Chr5:11116983-11117002 MsG0580024875.01.T01:CDS 40.0%
CACCTTCAATTGTTGGACAT+TGG - Chr5:11116985-11117004 None:intergenic 40.0%
CCCAAGGATGTTAAGATTCA+AGG + Chr5:11117598-11117617 MsG0580024875.01.T01:CDS 40.0%
CTAGCACAAGTATAAGGCTA+GGG + Chr5:11116454-11116473 MsG0580024875.01.T01:intron 40.0%
CTCTTCAAGACATAGCTCAT+AGG + Chr5:11115792-11115811 MsG0580024875.01.T01:CDS 40.0%
GAACTAAATTATGTCCCGCT+TGG + Chr5:11116096-11116115 MsG0580024875.01.T01:intron 40.0%
GCACCTAAATCAGTATCAGA+AGG - Chr5:11117571-11117590 None:intergenic 40.0%
GGTGGAAAAAATAGCAGCAA+TGG + Chr5:11115625-11115644 MsG0580024875.01.T01:exon 40.0%
GTCGACACAATCCATTTCTA+AGG + Chr5:11115730-11115749 MsG0580024875.01.T01:CDS 40.0%
TCAAATTTGACAGTACCGTC+AGG - Chr5:11117193-11117212 None:intergenic 40.0%
TCAATCACGCAGTTAATGCA+AGG + Chr5:11116357-11116376 MsG0580024875.01.T01:intron 40.0%
TCTCAGTGCTCTTAACCAAT+TGG - Chr5:11117696-11117715 None:intergenic 40.0%
TCTGATCCACCTTCAATTGT+TGG - Chr5:11116992-11117011 None:intergenic 40.0%
TGACGGTACTGTCAAATTTG+AGG + Chr5:11117192-11117211 MsG0580024875.01.T01:CDS 40.0%
TGATGAGGAAGAACTTGGTA+AGG + Chr5:11117441-11117460 MsG0580024875.01.T01:CDS 40.0%
TGTTTGATCGTGAAGAGGAA+TGG - Chr5:11117277-11117296 None:intergenic 40.0%
TTATACTTGTGCTAGCCCTA+GGG - Chr5:11116449-11116468 None:intergenic 40.0%
! CCATTTGAAGTATCTCCTGA+CGG + Chr5:11117175-11117194 MsG0580024875.01.T01:CDS 40.0%
! CGCACTTTGATTAAGTTGTC+TGG + Chr5:11115922-11115941 MsG0580024875.01.T01:intron 40.0%
! CTTCTAAGTAGGTTTTGCTC+TGG - Chr5:11116940-11116959 None:intergenic 40.0%
! GCTGATTCTGCTAAAATTGC+AGG + Chr5:11115818-11115837 MsG0580024875.01.T01:CDS 40.0%
!! AAGAGTGCTGCATCATCTAA+AGG + Chr5:11117472-11117491 MsG0580024875.01.T01:CDS 40.0%
!! AGAGTGCTGCATCATCTAAA+GGG + Chr5:11117473-11117492 MsG0580024875.01.T01:CDS 40.0%
!! AGTGACCATTTTAGTCCAAG+CGG - Chr5:11116114-11116133 None:intergenic 40.0%
!! CAGCCTTCTGATACTGATTT+AGG + Chr5:11117565-11117584 MsG0580024875.01.T01:CDS 40.0%
!!! GACACGTTTTGAGTTTGCAA+GGG + Chr5:11116655-11116674 MsG0580024875.01.T01:intron 40.0%
!!! GCTTTTGGCTTAGAACACAA+TGG + Chr5:11115752-11115771 MsG0580024875.01.T01:CDS 40.0%
!!! GGAGTTTTTTGTTACGCCTT+CGG - Chr5:11117089-11117108 None:intergenic 40.0%
!!! TGTGTTTTGAAAATCGAGCG+GGG - Chr5:11117110-11117129 None:intergenic 40.0%
AACTCTCCACTAAAGCTGTC+CGG - Chr5:11117319-11117338 None:intergenic 45.0%
AAGTAAGCCTGAAACTGGTG+AGG + Chr5:11117519-11117538 MsG0580024875.01.T01:CDS 45.0%
ACTTCTGAACTGGTGCCTAA+GGG - Chr5:11117834-11117853 None:intergenic 45.0%
AGAGGTGATGAGGAAGAACT+TGG + Chr5:11117436-11117455 MsG0580024875.01.T01:CDS 45.0%
ATGTCCCGCTTGGACTAAAA+TGG + Chr5:11116106-11116125 MsG0580024875.01.T01:intron 45.0%
CCAATAACCTCACCAGTTTC+AGG - Chr5:11117529-11117548 None:intergenic 45.0%
CCGTCAGGAGATACTTCAAA+TGG - Chr5:11117178-11117197 None:intergenic 45.0%
CCTGAAACTGGTGAGGTTAT+TGG + Chr5:11117526-11117545 MsG0580024875.01.T01:CDS 45.0%
CTATGCTAACAAGTGCCCTT+AGG + Chr5:11117816-11117835 MsG0580024875.01.T01:three_prime_UTR 45.0%
CTCATGCAACCAACCAAGAT+TGG + Chr5:11115674-11115693 MsG0580024875.01.T01:CDS 45.0%
CTTATACTTGTGCTAGCCCT+AGG - Chr5:11116450-11116469 None:intergenic 45.0%
GACTCATTCTCCTTCAAGTC+AGG + Chr5:11117010-11117029 MsG0580024875.01.T01:CDS 45.0%
GCTAGCACAAGTATAAGGCT+AGG + Chr5:11116453-11116472 MsG0580024875.01.T01:intron 45.0%
TACACGTTGGACGAGATAGA+AGG + Chr5:11117151-11117170 MsG0580024875.01.T01:CDS 45.0%
TACAGAGACAACAAGAGCAG+AGG - Chr5:11115858-11115877 None:intergenic 45.0%
TACTTCTGAACTGGTGCCTA+AGG - Chr5:11117835-11117854 None:intergenic 45.0%
TCATCGTTCTTGGACCCAAA+GGG + Chr5:11117361-11117380 MsG0580024875.01.T01:CDS 45.0%
TTCATCGTTCTTGGACCCAA+AGG + Chr5:11117360-11117379 MsG0580024875.01.T01:CDS 45.0%
TTTAGGTGCTAAAGCTCCCA+AGG + Chr5:11117582-11117601 MsG0580024875.01.T01:CDS 45.0%
! CTAGGGCTAGCACAAGTATA+AGG + Chr5:11116448-11116467 MsG0580024875.01.T01:intron 45.0%
! CTGTGAATGAAGTTGGCTCA+AGG - Chr5:11117060-11117079 None:intergenic 45.0%
! TTGAAGCACCTCTTCCCTTT+GGG - Chr5:11117378-11117397 None:intergenic 45.0%
! TTTGCTCTGGATTTCGTCGA+AGG - Chr5:11116927-11116946 None:intergenic 45.0%
!! GTGACCATTTTAGTCCAAGC+GGG - Chr5:11116113-11116132 None:intergenic 45.0%
!!! CGACACGTTTTGAGTTTGCA+AGG + Chr5:11116654-11116673 MsG0580024875.01.T01:intron 45.0%
!!! GTACTCTGTTTTGATGGCTG+TGG - Chr5:11115497-11115516 None:intergenic 45.0%
AACGATGAACCCCGGTAAGA+TGG - Chr5:11117349-11117368 None:intergenic 50.0%
AAGCTAAGGCTTGAGAAGCG+GGG - Chr5:11116484-11116503 None:intergenic 50.0%
CCAGCTGTTTGATCGTGAAG+AGG - Chr5:11117282-11117301 None:intergenic 50.0%
CCTCTTCACGATCAAACAGC+TGG + Chr5:11117279-11117298 MsG0580024875.01.T01:CDS 50.0%
GAAGCTAAGGCTTGAGAAGC+GGG - Chr5:11116485-11116504 None:intergenic 50.0%
GACACGCTTGACATACACGT+TGG + Chr5:11117138-11117157 MsG0580024875.01.T01:CDS 50.0%
GGAAGCTAAGGCTTGAGAAG+CGG - Chr5:11116486-11116505 None:intergenic 50.0%
TCACGAGGGTCTATGAACCT+AGG + Chr5:11116716-11116735 MsG0580024875.01.T01:intron 50.0%
TTACCGGGGTTCATCGTTCT+TGG + Chr5:11117351-11117370 MsG0580024875.01.T01:CDS 50.0%
TTCTTGGACCCAAAGGGAAG+AGG + Chr5:11117367-11117386 MsG0580024875.01.T01:CDS 50.0%
TTGTGCTAGCCCTAGGGAAA+CGG - Chr5:11116443-11116462 None:intergenic 50.0%
TTTGTGCACCCGTTTCCCTA+GGG + Chr5:11116431-11116450 MsG0580024875.01.T01:intron 50.0%
! ATCAAACAGCTGGTAGCGTC+AGG + Chr5:11117289-11117308 MsG0580024875.01.T01:CDS 50.0%
! GTTGAAGCACCTCTTCCCTT+TGG - Chr5:11117379-11117398 None:intergenic 50.0%
! TCAAACAGCTGGTAGCGTCA+GGG + Chr5:11117290-11117309 MsG0580024875.01.T01:CDS 50.0%
! TCGTCGAAGGTTAGTCGCTT+TGG - Chr5:11116914-11116933 None:intergenic 50.0%
! TTTTGTGCACCCGTTTCCCT+AGG + Chr5:11116430-11116449 MsG0580024875.01.T01:intron 50.0%
!! AAGGGAAGAGGTGCTTCAAC+CGG + Chr5:11117379-11117398 MsG0580024875.01.T01:CDS 50.0%
!! AATGCTGTTGCTTTGCCTGC+TGG + Chr5:11117409-11117428 MsG0580024875.01.T01:CDS 50.0%
!! ATTCAGGGAGCAAGTGCTGA+AGG + Chr5:11116884-11116903 MsG0580024875.01.T01:intron 50.0%
GGTCCAAGAACGATGAACCC+CGG - Chr5:11117357-11117376 None:intergenic 55.0%
TCATCACCTCTTCCACCAGC+AGG - Chr5:11117427-11117446 None:intergenic 55.0%
TGCTGGTGGAAGAGGTGATG+AGG + Chr5:11117426-11117445 MsG0580024875.01.T01:CDS 55.0%
TGTGCTAGCCCTAGGGAAAC+GGG - Chr5:11116442-11116461 None:intergenic 55.0%
GCTTTGCCTGCTGGTGGAAG+AGG + Chr5:11117418-11117437 MsG0580024875.01.T01:CDS 60.0%
! GGGAAGCCGGACAGCTTTAG+TGG + Chr5:11117310-11117329 MsG0580024875.01.T01:CDS 60.0%
!! GCTGTTGCTTTGCCTGCTGG+TGG + Chr5:11117412-11117431 MsG0580024875.01.T01:CDS 60.0%
AATGGCACACGCTCGCCTCC+GGG - Chr5:11117259-11117278 None:intergenic 65.0%
GAATGGCACACGCTCGCCTC+CGG - Chr5:11117260-11117279 None:intergenic 65.0%
GCTGTGACCGTTCAGCTCCC+CGG + Chr5:11117238-11117257 MsG0580024875.01.T01:CDS 65.0%
! GCTGGTAGCGTCAGGGAAGC+CGG + Chr5:11117297-11117316 MsG0580024875.01.T01:CDS 65.0%
ATGGCACACGCTCGCCTCCG+GGG - Chr5:11117258-11117277 None:intergenic 70.0%
CTCGCCTCCGGGGAGCTGAA+CGG - Chr5:11117248-11117267 None:intergenic 70.0%
GTGACCGTTCAGCTCCCCGG+AGG + Chr5:11117241-11117260 MsG0580024875.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 11115465 11117934 11115465 ID=MsG0580024875.01;Name=MsG0580024875.01
Chr5 mRNA 11115465 11117934 11115465 ID=MsG0580024875.01.T01;Parent=MsG0580024875.01;Name=MsG0580024875.01.T01;_AED=0.43;_eAED=0.43;_QI=179|1|1|1|1|1|2|286|329
Chr5 exon 11115465 11115874 11115465 ID=MsG0580024875.01.T01:exon:443;Parent=MsG0580024875.01.T01
Chr5 exon 11116890 11117934 11116890 ID=MsG0580024875.01.T01:exon:444;Parent=MsG0580024875.01.T01
Chr5 five_prime_UTR 11115465 11115643 11115465 ID=MsG0580024875.01.T01:five_prime_utr;Parent=MsG0580024875.01.T01
Chr5 CDS 11115644 11115874 11115644 ID=MsG0580024875.01.T01:cds;Parent=MsG0580024875.01.T01
Chr5 CDS 11116890 11117648 11116890 ID=MsG0580024875.01.T01:cds;Parent=MsG0580024875.01.T01
Chr5 three_prime_UTR 11117649 11117934 11117649 ID=MsG0580024875.01.T01:three_prime_utr;Parent=MsG0580024875.01.T01
Gene Sequence

>MsG0580024875.01.T01

ATGGCAGCATCATTACAAGCTGCAGCTACACTCATGCAACCAACCAAGATTGGTATCAATACTCGTAGCAACACTTTACATCTCAAGTCGACACAATCCATTTCTAAGGCTTTTGGCTTAGAACACAATGGAGCTAAACTCACTTGCTCTCTTCAAGACATAGCTCATAGGTTTGCTGATTCTGCTAAAATTGCAGGATTTGCTCTTGCTACCTCTGCTCTTGTTGTCTCTGGAGCAAGTGCTGAAGGTGCTCCAAAGCGACTAACCTTCGACGAAATCCAGAGCAAAACCTACTTAGAAGTAAAAGGAACAGGAACAGCTAACCAATGTCCAACAATTGAAGGTGGATCAGACTCATTCTCCTTCAAGTCAGGAAAATACAATGCAAAGAAATTCTGCCTTGAGCCAACTTCATTCACAGTAAAATCCGAAGGCGTAACAAAAAACTCCCCGCTCGATTTTCAAAACACAAAGCTAATGACACGCTTGACATACACGTTGGACGAGATAGAAGGACCATTTGAAGTATCTCCTGACGGTACTGTCAAATTTGAGGAGAAAGATGGAATTGATTACGCTGCTGTGACCGTTCAGCTCCCCGGAGGCGAGCGTGTGCCATTCCTCTTCACGATCAAACAGCTGGTAGCGTCAGGGAAGCCGGACAGCTTTAGTGGAGAGTTTTTAGTACCATCTTACCGGGGTTCATCGTTCTTGGACCCAAAGGGAAGAGGTGCTTCAACCGGTTATGACAATGCTGTTGCTTTGCCTGCTGGTGGAAGAGGTGATGAGGAAGAACTTGGTAAGGAAAATAACAAGAGTGCTGCATCATCTAAAGGGAAAATTACATTGAGTGTAACTCAAAGTAAGCCTGAAACTGGTGAGGTTATTGGTGTGTTTGAAAGTATTCAGCCTTCTGATACTGATTTAGGTGCTAAAGCTCCCAAGGATGTTAAGATTCAAGGTGTTTGGTATGCTCAGCTTGAATCATAG

Protein sequence

>MsG0580024875.01.T01

MAASLQAAATLMQPTKIGINTRSNTLHLKSTQSISKAFGLEHNGAKLTCSLQDIAHRFADSAKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIEGGSDSFSFKSGKYNAKKFCLEPTSFTVKSEGVTKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES*