AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022286.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022286.01.T01 MTR_4g088030 96.687 332 10 1 1 332 22 352 0.0 667
MsG0480022286.01.T01 MTR_4g087730 86.585 328 43 1 5 332 38 364 0.0 593
MsG0480022286.01.T01 MTR_2g015720 75.617 324 77 2 9 332 39 360 0.0 515
MsG0480022286.01.T01 MTR_2g091175 60.185 324 125 3 9 331 47 367 1.03e-145 416
MsG0480022286.01.T01 MTR_4g079700 58.075 322 133 2 9 330 44 363 5.60e-137 393
MsG0480022286.01.T01 MTR_3g049330 55.864 324 140 3 10 331 29 351 1.70e-132 381
MsG0480022286.01.T01 MTR_2g073510 54.829 321 141 4 9 326 30 349 8.42e-127 367
MsG0480022286.01.T01 MTR_3g021060 51.393 323 154 3 9 330 43 363 1.46e-122 357
MsG0480022286.01.T01 MTR_3g021090 51.393 323 154 3 5 326 24 344 3.58e-122 357
MsG0480022286.01.T01 MTR_3g035830 51.090 321 154 3 11 330 30 348 7.85e-122 354
MsG0480022286.01.T01 MTR_5g034810 52.615 325 149 4 9 331 32 353 4.46e-121 352
MsG0480022286.01.T01 MTR_3g464570 48.844 346 160 5 2 331 33 377 3.91e-117 343
MsG0480022286.01.T01 MTR_5g071350 49.441 358 152 7 2 331 44 400 6.02e-117 343
MsG0480022286.01.T01 MTR_2g073500 47.256 328 155 6 12 331 29 346 6.14e-107 316
MsG0480022286.01.T01 MTR_1g111010 46.177 327 159 8 9 331 29 342 1.19e-97 293
MsG0480022286.01.T01 MTR_0136s0010 39.067 343 186 6 12 332 170 511 5.40e-90 279
MsG0480022286.01.T01 MTR_1g050448 40.361 332 182 4 9 330 50 375 7.14e-89 271
MsG0480022286.01.T01 MTR_7g093450 40.233 343 182 5 12 332 248 589 1.44e-87 275
MsG0480022286.01.T01 MTR_3g464570 49.815 271 119 5 77 331 4 273 7.68e-87 262
MsG0480022286.01.T01 MTR_4g121560 39.773 352 183 9 6 332 108 455 5.06e-84 261
MsG0480022286.01.T01 MTR_4g126950 37.537 341 192 5 12 332 109 448 6.15e-84 261
MsG0480022286.01.T01 MTR_1g112210 36.826 334 186 6 12 330 59 382 5.93e-82 254
MsG0480022286.01.T01 MTR_5g033800 36.364 341 195 5 12 331 145 484 3.43e-80 253
MsG0480022286.01.T01 MTR_5g059400 36.812 345 194 6 10 331 173 516 5.25e-80 253
MsG0480022286.01.T01 MTR_1g116130 36.812 345 194 6 10 331 173 516 5.25e-80 253
MsG0480022286.01.T01 MTR_1g112210 36.826 334 173 7 12 330 59 369 1.70e-79 247
MsG0480022286.01.T01 MTR_8g069790 36.950 341 193 7 12 331 178 517 2.04e-78 249
MsG0480022286.01.T01 MTR_4g016940 36.257 342 195 7 12 330 86 427 1.30e-74 236
MsG0480022286.01.T01 MTR_3g070900 36.782 348 191 8 11 331 105 450 1.94e-74 236
MsG0480022286.01.T01 MTR_7g109550 37.838 333 183 8 12 326 137 463 1.62e-71 229
MsG0480022286.01.T01 MTR_5g082880 37.394 353 185 11 11 331 164 512 3.12e-71 230
MsG0480022286.01.T01 MTR_3g071650 34.694 343 201 8 12 331 89 431 1.18e-68 221
MsG0480022286.01.T01 MTR_4g014440 34.278 353 205 8 6 331 56 408 1.51e-68 220
MsG0480022286.01.T01 MTR_8g463790 35.569 343 195 8 12 331 71 410 2.22e-68 220
MsG0480022286.01.T01 MTR_3g090120 37.714 350 190 9 4 331 117 460 3.00e-66 216
MsG0480022286.01.T01 MTR_7g070060 35.244 349 199 9 9 330 61 409 3.44e-66 214
MsG0480022286.01.T01 MTR_7g094750 35.028 354 197 9 6 331 85 433 2.11e-65 213
MsG0480022286.01.T01 MTR_7g068920 35.072 345 201 7 9 330 77 421 4.37e-65 211
MsG0480022286.01.T01 MTR_1g058380 34.402 343 200 8 12 331 55 395 1.73e-64 209
MsG0480022286.01.T01 MTR_2g022560 33.903 351 202 9 7 331 92 438 1.81e-64 211
MsG0480022286.01.T01 MTR_5g083260 33.333 351 211 8 4 331 75 425 4.44e-64 209
MsG0480022286.01.T01 MTR_4g014430 33.913 345 202 9 5 326 101 442 2.12e-62 205
MsG0480022286.01.T01 MTR_8g093530 33.731 335 200 7 12 331 90 417 2.55e-61 202
MsG0480022286.01.T01 MTR_5g033800 35.470 234 140 3 12 234 145 378 9.58e-54 181
MsG0480022286.01.T01 MTR_7g070060 32.353 306 180 9 52 330 2 307 1.96e-46 160
MsG0480022286.01.T01 MTR_7g094750 33.061 245 145 4 6 234 85 326 6.52e-44 154
MsG0480022286.01.T01 MTR_5g069320 34.386 285 123 7 58 323 147 386 1.61e-43 154
MsG0480022286.01.T01 MTR_7g070060 33.333 237 149 4 9 236 61 297 4.19e-42 148
MsG0480022286.01.T01 MTR_5g035090 30.086 349 210 11 5 323 76 420 2.50e-39 144
MsG0480022286.01.T01 MTR_5g035150 30.612 343 206 9 11 323 84 424 3.53e-36 135
MsG0480022286.01.T01 MTR_4g092830 29.830 352 209 14 12 331 48 393 2.77e-34 130
MsG0480022286.01.T01 MTR_6g016875 30.471 361 205 12 2 326 54 404 3.02e-34 130
MsG0480022286.01.T01 MTR_3g021150 55.660 106 46 1 197 301 1 106 6.90e-34 121
MsG0480022286.01.T01 MTR_8g093870 30.372 349 212 13 8 330 129 472 1.03e-33 129
MsG0480022286.01.T01 MTR_6g061710 28.962 366 187 13 12 326 167 510 1.53e-33 129
MsG0480022286.01.T01 MTR_6g016880 28.490 351 216 8 11 332 77 421 7.80e-33 126
MsG0480022286.01.T01 MTR_4g125060 30.471 361 212 16 3 330 117 471 1.18e-32 126
MsG0480022286.01.T01 MTR_4g125060 30.471 361 212 16 3 330 156 510 1.67e-32 126
MsG0480022286.01.T01 MTR_4g125060 30.471 361 212 16 3 330 185 539 2.18e-32 126
MsG0480022286.01.T01 MTR_5g035080 28.852 357 197 16 12 326 75 416 7.64e-32 124
MsG0480022286.01.T01 MTR_8g027900 27.793 367 209 13 6 331 205 556 1.51e-31 124
MsG0480022286.01.T01 MTR_1g076690 27.247 356 212 11 9 326 220 566 5.15e-31 123
MsG0480022286.01.T01 MTR_3g109840 27.762 353 217 13 3 323 62 408 9.44e-31 120
MsG0480022286.01.T01 MTR_2g016060 28.177 362 216 14 1 326 43 396 2.63e-30 119
MsG0480022286.01.T01 MTR_5g035070 27.035 344 221 9 12 326 87 429 2.78e-30 119
MsG0480022286.01.T01 MTR_7g019120 26.912 353 229 8 6 332 73 422 2.23e-29 117
MsG0480022286.01.T01 MTR_7g033230 27.378 347 215 11 12 326 264 605 4.44e-29 117
MsG0480022286.01.T01 MTR_7g033230 27.378 347 215 11 12 326 334 675 8.76e-29 117
MsG0480022286.01.T01 MTR_8g099300 26.346 353 227 8 9 331 71 420 9.23e-29 115
MsG0480022286.01.T01 MTR_6g007777 28.532 361 213 15 3 330 109 457 3.75e-28 114
MsG0480022286.01.T01 MTR_8g104970 27.479 353 215 13 8 326 116 461 1.25e-27 112
MsG0480022286.01.T01 MTR_6g016240 27.762 353 214 13 8 326 67 412 6.03e-24 101
MsG0480022286.01.T01 MTR_5g035120 40.659 91 54 0 12 102 75 165 5.57e-18 80.5
MsG0480022286.01.T01 MTR_7g019140 38.043 92 57 0 9 100 76 167 2.57e-17 78.6
MsG0480022286.01.T01 MTR_3g021080 35.294 102 45 2 231 331 99 180 1.22e-14 71.6
MsG0480022286.01.T01 MTR_2g022580 29.688 128 71 4 72 183 2 126 6.17e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022286.01.T01 AT1G29050 64.565 333 115 3 1 332 50 380 2.03e-168 474
MsG0480022286.01.T01 AT2G34070 64.671 334 113 5 1 332 55 385 1.82e-162 459
MsG0480022286.01.T01 AT2G31110 57.994 319 133 1 12 330 45 362 8.52e-145 413
MsG0480022286.01.T01 AT2G42570 57.187 327 139 1 5 331 40 365 1.52e-142 407
MsG0480022286.01.T01 AT3G14850 53.086 324 146 4 7 326 29 350 5.01e-123 357
MsG0480022286.01.T01 AT2G34070 66.798 253 80 4 82 332 1 251 3.18e-121 349
MsG0480022286.01.T01 AT2G30900 51.692 325 151 5 12 331 43 366 1.88e-119 349
MsG0480022286.01.T01 AT1G78710 48.012 327 166 3 7 331 33 357 1.97e-119 348
MsG0480022286.01.T01 AT5G58600 50.147 339 151 6 10 331 64 401 7.78e-114 336
MsG0480022286.01.T01 AT2G30010 46.499 357 164 6 2 331 41 397 8.60e-106 315
MsG0480022286.01.T01 AT2G30010 46.499 357 164 6 2 331 84 440 1.34e-105 316
MsG0480022286.01.T01 AT2G31110 58.257 218 90 1 12 229 45 261 4.50e-97 288
MsG0480022286.01.T01 AT3G14850 54.217 249 108 4 82 326 1 247 2.85e-92 275
MsG0480022286.01.T01 AT2G31110 59.135 208 84 1 123 330 8 214 3.80e-91 271
MsG0480022286.01.T01 AT5G06700 40.407 344 182 6 11 332 254 596 8.78e-90 281
MsG0480022286.01.T01 AT1G78710 40.367 327 138 4 7 331 26 297 7.08e-86 261
MsG0480022286.01.T01 AT3G12060 40.116 344 183 6 11 332 195 537 1.26e-85 268
MsG0480022286.01.T01 AT3G54260 39.104 335 179 6 12 331 51 375 2.29e-85 262
MsG0480022286.01.T01 AT2G30900 52.423 227 105 3 12 236 43 268 1.73e-82 251
MsG0480022286.01.T01 AT5G20590 37.429 350 197 6 4 332 133 481 4.33e-82 257
MsG0480022286.01.T01 AT5G58600 51.965 229 107 3 10 236 64 291 2.17e-81 249
MsG0480022286.01.T01 AT5G01360 37.101 345 193 7 10 330 34 378 4.33e-79 246
MsG0480022286.01.T01 AT5G49340 36.994 346 193 7 11 332 99 443 1.43e-78 247
MsG0480022286.01.T01 AT5G01360 37.101 345 193 7 10 330 90 434 1.49e-78 246
MsG0480022286.01.T01 AT1G60790 36.416 346 194 7 11 331 189 533 4.35e-75 241
MsG0480022286.01.T01 AT3G62390 38.012 342 193 8 7 331 133 472 2.26e-74 237
MsG0480022286.01.T01 AT1G73140 35.632 348 198 8 7 331 62 406 5.71e-70 224
MsG0480022286.01.T01 AT5G19160 36.111 360 187 12 7 331 94 445 1.04e-69 224
MsG0480022286.01.T01 AT3G55990 36.311 347 192 9 12 331 140 484 1.79e-69 224
MsG0480022286.01.T01 AT2G40150 35.211 355 195 9 10 331 69 421 3.42e-69 222
MsG0480022286.01.T01 AT3G11030 34.844 353 204 9 4 331 98 449 2.95e-68 220
MsG0480022286.01.T01 AT1G48880 35.629 334 183 7 12 326 115 435 3.57e-68 220
MsG0480022286.01.T01 AT3G06080 34.571 350 203 7 7 331 98 446 2.25e-67 219
MsG0480022286.01.T01 AT5G06230 33.238 349 206 7 9 331 18 365 1.56e-66 214
MsG0480022286.01.T01 AT2G40160 34.670 349 198 9 12 331 77 424 1.70e-66 215
MsG0480022286.01.T01 AT2G40160 34.670 349 198 9 12 331 77 424 2.23e-66 215
MsG0480022286.01.T01 AT5G06230 33.238 349 206 7 9 331 59 406 4.21e-66 214
MsG0480022286.01.T01 AT2G40320 35.694 353 200 10 4 331 73 423 1.04e-65 213
MsG0480022286.01.T01 AT5G01620 33.524 349 206 9 2 326 99 445 2.52e-65 213
MsG0480022286.01.T01 AT5G01620 33.524 349 206 9 2 326 99 445 2.52e-65 213
MsG0480022286.01.T01 AT5G01620 33.524 349 206 9 2 326 107 453 4.69e-65 212
MsG0480022286.01.T01 AT2G38320 32.853 347 206 8 12 331 59 405 3.11e-63 206
MsG0480022286.01.T01 AT3G11570 33.951 324 193 6 28 331 98 420 1.38e-62 205
MsG0480022286.01.T01 AT2G38320 31.034 319 194 7 39 331 4 322 8.92e-53 177
MsG0480022286.01.T01 AT5G20590 36.066 244 143 4 4 234 133 376 3.60e-52 177
MsG0480022286.01.T01 AT5G19160 35.656 244 138 6 7 234 94 334 2.10e-50 171
MsG0480022286.01.T01 AT3G62390 35.983 239 142 5 7 234 133 371 4.06e-48 167
MsG0480022286.01.T01 AT2G40160 33.761 234 144 4 12 234 77 310 3.01e-45 157
MsG0480022286.01.T01 AT3G06080 34.025 241 146 4 7 234 98 338 3.11e-44 155
MsG0480022286.01.T01 AT5G06230 30.769 247 152 4 9 236 59 305 4.86e-40 143
MsG0480022286.01.T01 AT5G64470 31.856 361 192 17 12 332 55 401 4.53e-37 137
MsG0480022286.01.T01 AT4G25360 30.168 358 207 12 6 326 169 520 7.78e-37 139
MsG0480022286.01.T01 AT4G25360 30.168 358 207 12 6 326 169 520 7.78e-37 139
MsG0480022286.01.T01 AT5G64470 30.791 354 199 15 12 332 55 395 1.86e-36 135
MsG0480022286.01.T01 AT5G64020 29.888 358 206 13 12 330 57 408 2.68e-36 135
MsG0480022286.01.T01 AT1G70230 29.204 339 206 13 12 326 79 407 1.27e-34 131
MsG0480022286.01.T01 AT5G51640 30.226 354 201 12 12 326 138 484 9.52e-34 130
MsG0480022286.01.T01 AT2G37720 29.096 354 202 13 12 330 143 482 2.19e-33 129
MsG0480022286.01.T01 AT1G01430 27.273 363 224 10 4 331 91 448 2.37e-33 128
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 118 457 1.50e-31 123
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 194 533 2.96e-31 123
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 212 551 3.58e-31 123
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 212 551 3.58e-31 123
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 212 551 3.58e-31 123
MsG0480022286.01.T01 AT5G20680 28.406 345 216 14 12 330 212 551 3.58e-31 123
MsG0480022286.01.T01 AT4G01080 28.324 346 213 11 9 326 88 426 3.84e-30 119
MsG0480022286.01.T01 AT3G28150 28.333 360 198 11 12 330 70 410 1.26e-28 114
MsG0480022286.01.T01 AT5G15890 26.923 338 218 8 12 326 187 518 7.68e-28 114
MsG0480022286.01.T01 AT5G15900 27.429 350 220 9 10 330 65 409 9.84e-28 112
MsG0480022286.01.T01 AT5G15900 27.429 350 220 9 10 330 84 428 1.23e-27 112
MsG0480022286.01.T01 AT2G14530 28.371 356 213 12 9 330 59 406 2.29e-27 111
MsG0480022286.01.T01 AT4G11090 27.577 359 210 12 12 331 79 426 7.71e-27 110
MsG0480022286.01.T01 AT3G02440 26.453 344 218 10 12 326 135 472 3.52e-26 108
MsG0480022286.01.T01 AT3G02440 26.453 344 218 10 12 326 127 464 3.52e-26 108
MsG0480022286.01.T01 AT4G23790 26.136 352 226 9 12 331 79 428 4.42e-25 105
MsG0480022286.01.T01 AT5G64470 29.183 257 145 10 12 242 55 300 1.35e-20 91.3
MsG0480022286.01.T01 AT5G64470 29.183 257 145 10 12 242 55 300 1.35e-20 90.9

Find 89 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAGGTCTTCCATATATT+TGG 0.148888 4:+70659383 None:intergenic
AATAATTGTAATTTGTTCTT+TGG 0.220399 4:-70659481 MsG0480022286.01.T01:CDS
ACTATACCGTACACCATATT+TGG 0.252473 4:-70657035 MsG0480022286.01.T01:CDS
AATTTAATTACTATATATAT+TGG 0.269310 4:-70655963 MsG0480022286.01.T01:three_prime_UTR
ATTATTATATCCACCAAATA+TGG 0.271330 4:+70657022 None:intergenic
TATTTAAGATACTGATTATC+AGG 0.276183 4:+70659367 None:intergenic
CAGTTTGATTGCCAAATATA+TGG 0.285166 4:-70659394 MsG0480022286.01.T01:CDS
ACATGATTAGAGCTGCATTT+AGG 0.303593 4:+70656064 None:intergenic
ATTGACCACTTGGGCTGGTT+GGG 0.323556 4:-70656562 MsG0480022286.01.T01:CDS
AGGAGTATGTTCCAAGTATC+AGG 0.327240 4:+70656084 None:intergenic
TTGTTCACTACATCATTTGC+AGG 0.336870 4:+70656246 None:intergenic
AAAACTAAACTATTCTTTCA+AGG 0.366481 4:-70656516 MsG0480022286.01.T01:CDS
CGGGGAAGTTGAACCATTAC+CGG 0.374830 4:-70656295 MsG0480022286.01.T01:CDS
AGATTGCATGCACAGGACTA+TGG 0.376697 4:-70657070 MsG0480022286.01.T01:intron
GAAAAGCTTGTAGTGACATT+AGG 0.381141 4:+70658944 None:intergenic
ATCAGTATCTTAAATACTCT+TGG 0.387106 4:-70659360 MsG0480022286.01.T01:CDS
GGATATGTGGTTCCCGGTAA+TGG 0.391578 4:+70656282 None:intergenic
AATGTCTACTGTCTTCTTCC+AGG 0.394880 4:-70658909 MsG0480022286.01.T01:intron
TGTGAAATTAGAGTATATAT+TGG 0.416927 4:-70656044 MsG0480022286.01.T01:exon
AGTGAGGGACATGGACCGTT+TGG 0.425551 4:-70656601 MsG0480022286.01.T01:CDS
TCCCCGCTACATGTCTTCTT+CGG 0.430209 4:+70656312 None:intergenic
GATTGACCACTTGGGCTGGT+TGG 0.439990 4:-70656563 MsG0480022286.01.T01:CDS
GATAAGAAGATAATGTTTGT+AGG 0.445963 4:-70659025 MsG0480022286.01.T01:CDS
CTGGGTAAAGCACATAAATC+AGG 0.447794 4:+70659334 None:intergenic
TTGAATCCAGAGGGCAGGAT+TGG 0.450495 4:-70656341 MsG0480022286.01.T01:intron
TTACTTACTTGTTATGAGTA+GGG 0.455719 4:+70656487 None:intergenic
GTAATTTGTTCTTTGGAAGC+TGG 0.456024 4:-70659474 MsG0480022286.01.T01:CDS
TTTATAAGGGATTGACCACT+TGG 0.465985 4:-70656572 MsG0480022286.01.T01:CDS
TCTTCAACTCCTGGCATTGG+TGG 0.467165 4:-70656922 MsG0480022286.01.T01:CDS
ACATCATTTGCAGGAGGTAG+AGG 0.472593 4:+70656255 None:intergenic
TGTAGTCATTGGTGCCTACC+AGG 0.474740 4:-70656111 MsG0480022286.01.T01:CDS
TTGTGCCCTTGCTGGGTGCA+TGG 0.478358 4:+70659510 None:intergenic
TACCAGGACTACCTGATACT+TGG 0.478567 4:-70656095 MsG0480022286.01.T01:CDS
TAATTTGTTCTTTGGAAGCT+GGG 0.484946 4:-70659473 MsG0480022286.01.T01:CDS
TGGTGTACGGTATAGTTGTA+TGG 0.491607 4:+70657042 None:intergenic
GGATCCTTAGTATAGATAGA+AGG 0.493596 4:+70656147 None:intergenic
AAGGGATTGACCACTTGGGC+TGG 0.495484 4:-70656567 MsG0480022286.01.T01:CDS
ATAATAATTCAAGAAGATGT+TGG 0.497836 4:-70657007 MsG0480022286.01.T01:CDS
TGATCTTCAACTCCTGGCAT+TGG 0.498503 4:-70656925 MsG0480022286.01.T01:CDS
GTGGTGTAGGTTCAGTGGAG+AGG 0.499875 4:-70659068 MsG0480022286.01.T01:intron
GTTAAAGAACATGAAGAAGC+AGG 0.504244 4:-70656220 MsG0480022286.01.T01:CDS
ATCTATACTAAGGATCCAAC+TGG 0.504484 4:-70656141 MsG0480022286.01.T01:CDS
CTGGCATTGATTGTAGTCAT+TGG 0.505796 4:-70656122 MsG0480022286.01.T01:CDS
ATTACCGGGAACCACATATC+CGG 0.506278 4:-70656280 MsG0480022286.01.T01:CDS
GTCTTGTATGATTCATGCGT+CGG 0.512224 4:-70658969 MsG0480022286.01.T01:CDS
GTTACTTACTTGTTATGAGT+AGG 0.517658 4:+70656486 None:intergenic
TCTCCTTGAATCCAGAGGGC+AGG 0.517922 4:-70656346 MsG0480022286.01.T01:intron
ACATCCTTCTATCTATACTA+AGG 0.519367 4:-70656151 MsG0480022286.01.T01:CDS
AGGTAGAGGGGCCGGATATG+TGG 0.530211 4:+70656269 None:intergenic
TACTTACTTGTTATGAGTAG+GGG 0.532035 4:+70656488 None:intergenic
TTCCAAGTATCAGGTAGTCC+TGG 0.535659 4:+70656093 None:intergenic
CATCATTTGCAGGAGGTAGA+GGG 0.540823 4:+70656256 None:intergenic
AACCGAAGAAGACATGTAGC+GGG 0.541404 4:-70656314 MsG0480022286.01.T01:CDS
ACATGTTGATCTTCAACTCC+TGG 0.546418 4:-70656931 MsG0480022286.01.T01:CDS
AGTGTGGATCCACCAATGCC+AGG 0.547954 4:+70656913 None:intergenic
TTTGCAGGAGGTAGAGGGGC+CGG 0.548515 4:+70656261 None:intergenic
CTGATTTATGTGCTTTACCC+AGG 0.552245 4:-70659333 MsG0480022286.01.T01:intron
ATCAAACTGAGCTTCAACGA+AGG 0.553255 4:+70659408 None:intergenic
GGGGCCGGATATGTGGTTCC+CGG 0.554885 4:+70656276 None:intergenic
TGACTACAATCAATGCCAGT+TGG 0.558982 4:+70656126 None:intergenic
ATACCGTACACCATATTTGG+TGG 0.560969 4:-70657032 MsG0480022286.01.T01:CDS
CCTTATAAAATGCATCCAAA+CGG 0.562648 4:+70656586 None:intergenic
TGGCATTGGTGGATCCACAC+TGG 0.570664 4:-70656911 MsG0480022286.01.T01:CDS
ACGCTGGACTCTATAAAAGC+TGG 0.571735 4:-70656974 MsG0480022286.01.T01:CDS
ATTCATTGAGTCTAAACATG+TGG 0.578501 4:-70659000 MsG0480022286.01.T01:CDS
TATCCACCAAATATGGTGTA+CGG 0.590876 4:+70657029 None:intergenic
CTATAAAAGCTGGTAAAGCA+TGG 0.592608 4:-70656964 MsG0480022286.01.T01:CDS
GGGGAAGTTGAACCATTACC+GGG 0.597940 4:-70656294 MsG0480022286.01.T01:CDS
TTATATCCATGCACCCAGCA+AGG 0.602227 4:-70659516 None:intergenic
TATATCCATGCACCCAGCAA+GGG 0.606783 4:-70659515 None:intergenic
TTCATTGAGTCTAAACATGT+GGG 0.609808 4:-70658999 MsG0480022286.01.T01:CDS
TCAAACTGAGCTTCAACGAA+GGG 0.618613 4:+70659409 None:intergenic
ATCAACCCAACCAGCCCAAG+TGG 0.622283 4:+70656557 None:intergenic
GAGATGGTTCTAATCTAGTG+AGG 0.627215 4:-70656617 MsG0480022286.01.T01:CDS
AAGTATCAGGTAGTCCTGGT+AGG 0.628734 4:+70656097 None:intergenic
ATCATTTGCAGGAGGTAGAG+GGG 0.628843 4:+70656257 None:intergenic
AGATGGTTCTAATCTAGTGA+GGG 0.631565 4:-70656616 MsG0480022286.01.T01:CDS
TTCACTACATCATTTGCAGG+AGG 0.631894 4:+70656249 None:intergenic
TGTTGGTAGAGTGCTTACGC+TGG 0.633724 4:-70656990 MsG0480022286.01.T01:CDS
TTATAAGGGATTGACCACTT+GGG 0.640369 4:-70656571 MsG0480022286.01.T01:CDS
GAACCGAAGAAGACATGTAG+CGG 0.645973 4:-70656315 MsG0480022286.01.T01:CDS
CAGCTTGAAGAATCATAGAG+AGG 0.652645 4:+70659433 None:intergenic
TTCTAATCTAGTGAGGGACA+TGG 0.659068 4:-70656610 MsG0480022286.01.T01:CDS
TGGAAGAAGACAGTAGACAT+TGG 0.660692 4:+70658911 None:intergenic
TGGTAAAGCATGGTTAGACA+TGG 0.665553 4:-70656954 MsG0480022286.01.T01:CDS
ATCCACACTGGAGATTTACG+AGG 0.690791 4:-70656899 MsG0480022286.01.T01:CDS
ACCGAAGAAGACATGTAGCG+GGG 0.713042 4:-70656313 MsG0480022286.01.T01:CDS
TCCACACTGGAGATTTACGA+GGG 0.713392 4:-70656898 MsG0480022286.01.T01:intron
ACCCTCGTAAATCTCCAGTG+TGG 0.727033 4:+70656897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATCAAATATGA+AGG + Chr4:70658071-70658090 None:intergenic 10.0%
!! AATATAATATTATATAAGTG+AGG - Chr4:70657008-70657027 MsG0480022286.01.T01:CDS 10.0%
!! AAATTTGTATTGTCATTATA+GGG - Chr4:70657875-70657894 MsG0480022286.01.T01:intron 15.0%
!! AATAAAGTAAAGATTCAATT+TGG + Chr4:70658135-70658154 None:intergenic 15.0%
!! ATAAAGTAAAGATTCAATTT+GGG + Chr4:70658134-70658153 None:intergenic 15.0%
!! ATCATTGATATTATCATATT+GGG + Chr4:70658213-70658232 None:intergenic 15.0%
!! CATTAATTCATTATAATAGA+TGG - Chr4:70658009-70658028 MsG0480022286.01.T01:intron 15.0%
!! TAAATTTGTATTGTCATTAT+AGG - Chr4:70657874-70657893 MsG0480022286.01.T01:intron 15.0%
!! TATATGTGACAATTAATATT+TGG - Chr4:70656247-70656266 MsG0480022286.01.T01:CDS 15.0%
!! TATCATTGATATTATCATAT+TGG + Chr4:70658214-70658233 None:intergenic 15.0%
!! TTATTAAATAAACATTTGGA+CGG + Chr4:70657221-70657240 None:intergenic 15.0%
!!! AACATCATTGATTTTTTTTA+AGG + Chr4:70658245-70658264 None:intergenic 15.0%
!!! AATAATTGTAATTTGTTCTT+TGG - Chr4:70655925-70655944 MsG0480022286.01.T01:three_prime_UTR 15.0%
!! AAAACTAAACTATTCTTTCA+AGG - Chr4:70658890-70658909 MsG0480022286.01.T01:intron 20.0%
!! AATTAACTCGTTGAATAAAA+TGG - Chr4:70656882-70656901 MsG0480022286.01.T01:intron 20.0%
!! AATTTGTATTGTCATTATAG+GGG - Chr4:70657876-70657895 MsG0480022286.01.T01:intron 20.0%
!! AGATAAAAAAATATGTTGCA+AGG + Chr4:70657955-70657974 None:intergenic 20.0%
!! ATAATAATTCAAGAAGATGT+TGG - Chr4:70658399-70658418 MsG0480022286.01.T01:intron 20.0%
!! ATTATTATATCCACCAAATA+TGG + Chr4:70658387-70658406 None:intergenic 20.0%
!! GATAAAAAAATATGTTGCAA+GGG + Chr4:70657954-70657973 None:intergenic 20.0%
!! TCATTGATATTATCATATTG+GGG + Chr4:70658212-70658231 None:intergenic 20.0%
!! TGTGAAATTAGAGTATATAT+TGG - Chr4:70659362-70659381 MsG0480022286.01.T01:CDS 20.0%
!! TTCAAATATACATTCAATTG+TGG + Chr4:70658573-70658592 None:intergenic 20.0%
!! TTGAATGTATATTTGAATTG+AGG - Chr4:70658576-70658595 MsG0480022286.01.T01:intron 20.0%
!!! AAGAATAGTTTAGTTTTAGT+AGG + Chr4:70658887-70658906 None:intergenic 20.0%
!!! AATATTTCTATGGAAAATGA+TGG + Chr4:70656801-70656820 None:intergenic 20.0%
!!! AGAATAGTTTAGTTTTAGTA+GGG + Chr4:70658886-70658905 None:intergenic 20.0%
!!! CTCTAATTAAAAGTATGTAT+TGG + Chr4:70658967-70658986 None:intergenic 20.0%
!!! GACTTATTTTTTTTGAAGTT+TGG + Chr4:70657333-70657352 None:intergenic 20.0%
!!! GTAATGAGTAATTATTTTTG+TGG - Chr4:70656319-70656338 MsG0480022286.01.T01:CDS 20.0%
!!! TATTTAAGATACTGATTATC+AGG + Chr4:70656042-70656061 None:intergenic 20.0%
! AATATCTAGATTTAGTGACA+AGG + Chr4:70657101-70657120 None:intergenic 25.0%
! AATTTCGAGCTTAATATCTT+TGG + Chr4:70656755-70656774 None:intergenic 25.0%
! AGAAATATTTGAATGAGACT+AGG - Chr4:70656812-70656831 MsG0480022286.01.T01:intron 25.0%
! ATCAGTATCTTAAATACTCT+TGG - Chr4:70656046-70656065 MsG0480022286.01.T01:exon 25.0%
! CACTAACACAGTTTAATTAT+GGG + Chr4:70658306-70658325 None:intergenic 25.0%
! CTATTTAAACAAAGTCTGAT+TGG - Chr4:70657412-70657431 MsG0480022286.01.T01:intron 25.0%
! GATAAAAATATCCATATTCG+TGG - Chr4:70658168-70658187 MsG0480022286.01.T01:intron 25.0%
! GATAAGAAGATAATGTTTGT+AGG - Chr4:70656381-70656400 MsG0480022286.01.T01:intron 25.0%
! TATATGTGACATATCACAAA+GGG + Chr4:70656137-70656156 None:intergenic 25.0%
! TCACTAACACAGTTTAATTA+TGG + Chr4:70658307-70658326 None:intergenic 25.0%
! TTACATTCGTACTATACATT+AGG + Chr4:70656303-70656322 None:intergenic 25.0%
! TTATATGTGACATATCACAA+AGG + Chr4:70656138-70656157 None:intergenic 25.0%
! TTTATTTGTAAAGAGAGAGA+AGG + Chr4:70657621-70657640 None:intergenic 25.0%
!! AAAGTGATGAATGTGTTATT+TGG - Chr4:70658738-70658757 MsG0480022286.01.T01:intron 25.0%
!! CAATCAGACTTTGTTTAAAT+AGG + Chr4:70657414-70657433 None:intergenic 25.0%
!! GTCTCATTCAAATATTTCTA+TGG + Chr4:70656811-70656830 None:intergenic 25.0%
!! TTTAGAGTTGTCTTTACATA+AGG + Chr4:70657777-70657796 None:intergenic 25.0%
!! TTTTCGTAAATGTTCTTAAG+AGG - Chr4:70659474-70659493 MsG0480022286.01.T01:CDS 25.0%
!!! AGTAATTATTTTTGTGGTGT+AGG - Chr4:70656325-70656344 MsG0480022286.01.T01:CDS 25.0%
!!! ATAAACGTGTTTTGTTTCTA+TGG + Chr4:70656218-70656237 None:intergenic 25.0%
!!! CTTTACTTTATTTCTATCCA+TGG - Chr4:70658143-70658162 MsG0480022286.01.T01:intron 25.0%
!!! TCATTTTGTTTGTTTCTTTG+CGG - Chr4:70656595-70656614 MsG0480022286.01.T01:CDS 25.0%
!!! TTACTTACTTGTTATGAGTA+GGG + Chr4:70658922-70658941 None:intergenic 25.0%
AAACAAGAACAACTATTACC+TGG + Chr4:70656518-70656537 None:intergenic 30.0%
ACATCCTTCTATCTATACTA+AGG - Chr4:70659255-70659274 MsG0480022286.01.T01:intron 30.0%
ATACAAACTAACAGTATACC+TGG + Chr4:70656094-70656113 None:intergenic 30.0%
ATTCATTGAGTCTAAACATG+TGG - Chr4:70656406-70656425 MsG0480022286.01.T01:intron 30.0%
ATTTGAATTGAGGTGATTTG+AGG - Chr4:70658586-70658605 MsG0480022286.01.T01:intron 30.0%
CAGTTTGATTGCCAAATATA+TGG - Chr4:70656012-70656031 MsG0480022286.01.T01:three_prime_UTR 30.0%
CCTGTTACATGTAAAATGAT+AGG - Chr4:70656700-70656719 MsG0480022286.01.T01:intron 30.0%
CCTTATAAAATGCATCCAAA+CGG + Chr4:70658823-70658842 None:intergenic 30.0%
GATATTAAGCTCGAAATTGA+AGG - Chr4:70656757-70656776 MsG0480022286.01.T01:intron 30.0%
TAAACTGTGTTAGTGATACT+TGG - Chr4:70658311-70658330 MsG0480022286.01.T01:intron 30.0%
TAACACAGTTTAATTATGGG+TGG + Chr4:70658303-70658322 None:intergenic 30.0%
TACAAACTAACAGTATACCT+GGG + Chr4:70656093-70656112 None:intergenic 30.0%
TAGTTGATCTACATAAAGTC+TGG - Chr4:70656856-70656875 MsG0480022286.01.T01:intron 30.0%
TATCAGGTCTTCCATATATT+TGG + Chr4:70656026-70656045 None:intergenic 30.0%
TATTTGAATGAGACTAGGTT+AGG - Chr4:70656817-70656836 MsG0480022286.01.T01:intron 30.0%
TCATGATTGGAGAAATTCTT+AGG + Chr4:70657730-70657749 None:intergenic 30.0%
TGATATTATCATATTGGGGA+TGG + Chr4:70658208-70658227 None:intergenic 30.0%
TGGTGTAAATGAGCATATAT+TGG + Chr4:70658947-70658966 None:intergenic 30.0%
TGTGACCAAAGAAAATTTCT+TGG - Chr4:70657694-70657713 MsG0480022286.01.T01:intron 30.0%
TTAAATAAACATTTGGACGG+TGG + Chr4:70657218-70657237 None:intergenic 30.0%
TTCATTGAGTCTAAACATGT+GGG - Chr4:70656407-70656426 MsG0480022286.01.T01:intron 30.0%
TTGTAAACTGTTGCAATCAT+AGG + Chr4:70657476-70657495 None:intergenic 30.0%
! CCTATCATTTTACATGTAAC+AGG + Chr4:70656703-70656722 None:intergenic 30.0%
! CGTTTGGATGCATTTTATAA+GGG - Chr4:70658821-70658840 MsG0480022286.01.T01:intron 30.0%
!! ATGGATATTTTTATCCACCA+TGG + Chr4:70658163-70658182 None:intergenic 30.0%
!! CATTTTGTTTGTTTCTTTGC+GGG - Chr4:70656596-70656615 MsG0480022286.01.T01:CDS 30.0%
!! CGTGACTTCTATTTTGAAAA+AGG + Chr4:70657138-70657157 None:intergenic 30.0%
!! CTATTTTGAAAAAGGCTAAC+AGG + Chr4:70657130-70657149 None:intergenic 30.0%
!! GTTACTTACTTGTTATGAGT+AGG + Chr4:70658923-70658942 None:intergenic 30.0%
!! TAATTTGTTCTTTGGAAGCT+GGG - Chr4:70655933-70655952 MsG0480022286.01.T01:three_prime_UTR 30.0%
!! TACTTACTTGTTATGAGTAG+GGG + Chr4:70658921-70658940 None:intergenic 30.0%
!! TACTTTATTTCTATCCATGG+TGG - Chr4:70658146-70658165 MsG0480022286.01.T01:intron 30.0%
AACCAAAGCATACTCATGAT+TGG + Chr4:70657743-70657762 None:intergenic 35.0%
ACATGATTAGAGCTGCATTT+AGG + Chr4:70659345-70659364 None:intergenic 35.0%
ACTATACCGTACACCATATT+TGG - Chr4:70658371-70658390 MsG0480022286.01.T01:intron 35.0%
ATCTATACTAAGGATCCAAC+TGG - Chr4:70659265-70659284 MsG0480022286.01.T01:intron 35.0%
CAAAGAAAATTTCTTGGTCC+TGG - Chr4:70657700-70657719 MsG0480022286.01.T01:intron 35.0%
CTATAAAAGCTGGTAAAGCA+TGG - Chr4:70658442-70658461 MsG0480022286.01.T01:intron 35.0%
GAAAAGCTTGTAGTGACATT+AGG + Chr4:70656465-70656484 None:intergenic 35.0%
GATTGCAACAGTTTACAAGT+TGG - Chr4:70657478-70657497 MsG0480022286.01.T01:intron 35.0%
GGATCCTTAGTATAGATAGA+AGG + Chr4:70659262-70659281 None:intergenic 35.0%
GTTAAAGAACATGAAGAAGC+AGG - Chr4:70659186-70659205 MsG0480022286.01.T01:intron 35.0%
TAAACCAGGACCAAGAAATT+TGG - Chr4:70657572-70657591 MsG0480022286.01.T01:intron 35.0%
TATCCACCAAATATGGTGTA+CGG + Chr4:70658380-70658399 None:intergenic 35.0%
TATCCATATTCGTGGATATC+CGG - Chr4:70658176-70658195 MsG0480022286.01.T01:intron 35.0%
TCTTCTCTCTCTTCTTTCTT+TGG - Chr4:70657670-70657689 MsG0480022286.01.T01:intron 35.0%
TGATTGGAGAAATTCTTAGG+TGG + Chr4:70657727-70657746 None:intergenic 35.0%
TGTGACCAAACCAAATTTCT+TGG + Chr4:70657585-70657604 None:intergenic 35.0%
TGTGTCATCAACATCATTCA+TGG - Chr4:70657534-70657553 MsG0480022286.01.T01:intron 35.0%
TTATAAGGGATTGACCACTT+GGG - Chr4:70658835-70658854 MsG0480022286.01.T01:intron 35.0%
TTCAAAATAGAAGTCACGTG+TGG - Chr4:70657140-70657159 MsG0480022286.01.T01:intron 35.0%
TTGTTCACTACATCATTTGC+AGG + Chr4:70659163-70659182 None:intergenic 35.0%
TTTATAAGGGATTGACCACT+TGG - Chr4:70658834-70658853 MsG0480022286.01.T01:intron 35.0%
! ATGTCACTACAAGCTTTTCT+AGG - Chr4:70656466-70656485 MsG0480022286.01.T01:intron 35.0%
! CAGGACCAAGAAATTTTCTT+TGG + Chr4:70657702-70657721 None:intergenic 35.0%
! CCGTTTGGATGCATTTTATA+AGG - Chr4:70658820-70658839 MsG0480022286.01.T01:intron 35.0%
!! AGATGGTTCTAATCTAGTGA+GGG - Chr4:70658790-70658809 MsG0480022286.01.T01:intron 35.0%
!! GTAATTTGTTCTTTGGAAGC+TGG - Chr4:70655932-70655951 MsG0480022286.01.T01:three_prime_UTR 35.0%
!! TTATTTGGCTTGCTTCATTC+AGG - Chr4:70658753-70658772 MsG0480022286.01.T01:intron 35.0%
!!! GAGAGGATTTTTTGAATAGG+TGG - Chr4:70656355-70656374 MsG0480022286.01.T01:intron 35.0%
!!! GGATTTTTTGAATAGGTGGA+AGG - Chr4:70656359-70656378 MsG0480022286.01.T01:intron 35.0%
!!! GTGGAGAGGATTTTTTGAAT+AGG - Chr4:70656352-70656371 MsG0480022286.01.T01:intron 35.0%
AATGTCTACTGTCTTCTTCC+AGG - Chr4:70656497-70656516 MsG0480022286.01.T01:CDS 40.0%
ACATGTTGATCTTCAACTCC+TGG - Chr4:70658475-70658494 MsG0480022286.01.T01:intron 40.0%
ATACCGTACACCATATTTGG+TGG - Chr4:70658374-70658393 MsG0480022286.01.T01:intron 40.0%
ATCAAACTGAGCTTCAACGA+AGG + Chr4:70656001-70656020 None:intergenic 40.0%
CAAACCAAATTTCTTGGTCC+TGG + Chr4:70657579-70657598 None:intergenic 40.0%
CAGCTTGAAGAATCATAGAG+AGG + Chr4:70655976-70655995 None:intergenic 40.0%
CAGGACCAAGAAATTTGGTT+TGG - Chr4:70657577-70657596 MsG0480022286.01.T01:intron 40.0%
CTCCAATCATGAGTATGCTT+TGG - Chr4:70657738-70657757 MsG0480022286.01.T01:intron 40.0%
CTGATTTATGTGCTTTACCC+AGG - Chr4:70656073-70656092 MsG0480022286.01.T01:CDS 40.0%
CTGGGTAAAGCACATAAATC+AGG + Chr4:70656075-70656094 None:intergenic 40.0%
GAGAAACTCTTGTGTAAACC+AGG - Chr4:70657558-70657577 MsG0480022286.01.T01:intron 40.0%
GAGGTGATTTGAGGAAACTA+CGG - Chr4:70658595-70658614 MsG0480022286.01.T01:intron 40.0%
GCACTGTAAAGTAAAACGAG+TGG - Chr4:70657250-70657269 MsG0480022286.01.T01:intron 40.0%
GTCTTGTATGATTCATGCGT+CGG - Chr4:70656437-70656456 MsG0480022286.01.T01:intron 40.0%
TAAGCTCGAAATTGAAGGTC+TGG - Chr4:70656762-70656781 MsG0480022286.01.T01:intron 40.0%
TATCATATTGGGGATGGCAA+TGG + Chr4:70658202-70658221 None:intergenic 40.0%
TATTATCACCCTCAAACGAG+AGG - Chr4:70657443-70657462 MsG0480022286.01.T01:intron 40.0%
TCAAACTGAGCTTCAACGAA+GGG + Chr4:70656000-70656019 None:intergenic 40.0%
TCTCGTTTGAGGGTGATAAT+AGG + Chr4:70657444-70657463 None:intergenic 40.0%
TGACTACAATCAATGCCAGT+TGG + Chr4:70659283-70659302 None:intergenic 40.0%
TGGAAGAAGACAGTAGACAT+TGG + Chr4:70656498-70656517 None:intergenic 40.0%
TGGTAAAGCATGGTTAGACA+TGG - Chr4:70658452-70658471 MsG0480022286.01.T01:intron 40.0%
TGGTGTACGGTATAGTTGTA+TGG + Chr4:70658367-70658386 None:intergenic 40.0%
TTCACTACATCATTTGCAGG+AGG + Chr4:70659160-70659179 None:intergenic 40.0%
TTCTAATCTAGTGAGGGACA+TGG - Chr4:70658796-70658815 MsG0480022286.01.T01:intron 40.0%
! AGGAGTATGTTCCAAGTATC+AGG + Chr4:70659325-70659344 None:intergenic 40.0%
! AGGTGGGATTTTATCAGAGA+TGG - Chr4:70658773-70658792 MsG0480022286.01.T01:intron 40.0%
! CTCGTTTTACTTTACAGTGC+AGG + Chr4:70657250-70657269 None:intergenic 40.0%
! TGAAGTTTGGTAACACGTGA+CGG + Chr4:70657320-70657339 None:intergenic 40.0%
! TGCAACAGTTTACAAGTTGG+AGG - Chr4:70657481-70657500 MsG0480022286.01.T01:intron 40.0%
! TTTTTGTGGTGTAGGTTCAG+TGG - Chr4:70656333-70656352 MsG0480022286.01.T01:CDS 40.0%
!! CTGGCATTGATTGTAGTCAT+TGG - Chr4:70659284-70659303 MsG0480022286.01.T01:intron 40.0%
!! GAGATGGTTCTAATCTAGTG+AGG - Chr4:70658789-70658808 MsG0480022286.01.T01:intron 40.0%
AACCGAAGAAGACATGTAGC+GGG - Chr4:70659092-70659111 MsG0480022286.01.T01:intron 45.0%
AAGTATCAGGTAGTCCTGGT+AGG + Chr4:70659312-70659331 None:intergenic 45.0%
ACATCATTTGCAGGAGGTAG+AGG + Chr4:70659154-70659173 None:intergenic 45.0%
ACGAGTGGCTAAGATTACAC+TGG - Chr4:70657265-70657284 MsG0480022286.01.T01:intron 45.0%
ACGCTGGACTCTATAAAAGC+TGG - Chr4:70658432-70658451 MsG0480022286.01.T01:intron 45.0%
AGATTGCATGCACAGGACTA+TGG - Chr4:70658336-70658355 MsG0480022286.01.T01:intron 45.0%
ATAGAAGTCACGTGTGGACT+AGG - Chr4:70657146-70657165 MsG0480022286.01.T01:intron 45.0%
ATCATTTGCAGGAGGTAGAG+GGG + Chr4:70659152-70659171 None:intergenic 45.0%
ATCCACACTGGAGATTTACG+AGG - Chr4:70658507-70658526 MsG0480022286.01.T01:intron 45.0%
ATGTCCAGTGAAAAGGACAC+AGG + Chr4:70657179-70657198 None:intergenic 45.0%
ATTACCGGGAACCACATATC+CGG - Chr4:70659126-70659145 MsG0480022286.01.T01:intron 45.0%
CATCATTTGCAGGAGGTAGA+GGG + Chr4:70659153-70659172 None:intergenic 45.0%
CCTTTCTCCTTGAATCCAGA+GGG - Chr4:70659056-70659075 MsG0480022286.01.T01:CDS 45.0%
GAACCGAAGAAGACATGTAG+CGG - Chr4:70659091-70659110 MsG0480022286.01.T01:intron 45.0%
GAGAAATTCTTAGGTGGTCC+AGG + Chr4:70657721-70657740 None:intergenic 45.0%
GTTGACATCCTCTCGTTTGA+GGG + Chr4:70657454-70657473 None:intergenic 45.0%
TACCAGGACTACCTGATACT+TGG - Chr4:70659311-70659330 MsG0480022286.01.T01:intron 45.0%
TCCACACTGGAGATTTACGA+GGG - Chr4:70658508-70658527 MsG0480022286.01.T01:intron 45.0%
TCCTTTCTCCTTGAATCCAG+AGG - Chr4:70659055-70659074 MsG0480022286.01.T01:CDS 45.0%
TGATCTTCAACTCCTGGCAT+TGG - Chr4:70658481-70658500 MsG0480022286.01.T01:intron 45.0%
TTCCAAGTATCAGGTAGTCC+TGG + Chr4:70659316-70659335 None:intergenic 45.0%
! GAAGTTTGGTAACACGTGAC+GGG + Chr4:70657319-70657338 None:intergenic 45.0%
! TGTGTCCTTTTCACTGGACA+TGG - Chr4:70657178-70657197 MsG0480022286.01.T01:intron 45.0%
! TTGACTTTTGTGCCCTTGCT+GGG + Chr4:70655906-70655925 None:intergenic 45.0%
!! TTGGCTTGCTTCATTCAGGT+GGG - Chr4:70658757-70658776 MsG0480022286.01.T01:intron 45.0%
!! TTTGACTTTTGTGCCCTTGC+TGG + Chr4:70655907-70655926 None:intergenic 45.0%
!! TTTGGCTTGCTTCATTCAGG+TGG - Chr4:70658756-70658775 MsG0480022286.01.T01:intron 45.0%
!! AAAATTATTAAATAAACATT+TGG + Chr4:70657225-70657244 None:intergenic 5.0%
!! AATTTAATTACTATATATAT+TGG - Chr4:70659443-70659462 MsG0480022286.01.T01:CDS 5.0%
!!! ATGTTTTAAATTTTTAAATA+AGG + Chr4:70657979-70657998 None:intergenic 5.0%
!!! TATATTTTAACTATATATAT+AGG + Chr4:70656994-70657013 None:intergenic 5.0%
AATCCTGCCCTCTGGATTCA+AGG + Chr4:70659066-70659085 None:intergenic 50.0%
ACCCTCGTAAATCTCCAGTG+TGG + Chr4:70658512-70658531 None:intergenic 50.0%
ACCGAAGAAGACATGTAGCG+GGG - Chr4:70659093-70659112 MsG0480022286.01.T01:intron 50.0%
ATATTGGGGATGGCAATGGC+CGG + Chr4:70658198-70658217 None:intergenic 50.0%
CCCTCTGGATTCAAGGAGAA+AGG + Chr4:70659059-70659078 None:intergenic 50.0%
CGGGGAAGTTGAACCATTAC+CGG - Chr4:70659111-70659130 MsG0480022286.01.T01:intron 50.0%
CTGCACCATGTCCAGTGAAA+AGG + Chr4:70657186-70657205 None:intergenic 50.0%
CTTGGAGAGATTGCATGCAC+AGG - Chr4:70658329-70658348 MsG0480022286.01.T01:intron 50.0%
GGATATGTGGTTCCCGGTAA+TGG + Chr4:70659127-70659146 None:intergenic 50.0%
GGGGAAGTTGAACCATTACC+GGG - Chr4:70659112-70659131 MsG0480022286.01.T01:intron 50.0%
GGTTGACATCCTCTCGTTTG+AGG + Chr4:70657455-70657474 None:intergenic 50.0%
TCCCCGCTACATGTCTTCTT+CGG + Chr4:70659097-70659116 None:intergenic 50.0%
TGGCCGGATATCCACGAATA+TGG + Chr4:70658182-70658201 None:intergenic 50.0%
TTCATTCCAATCCTGCCCTC+TGG + Chr4:70659074-70659093 None:intergenic 50.0%
TTGAATCCAGAGGGCAGGAT+TGG - Chr4:70659065-70659084 MsG0480022286.01.T01:intron 50.0%
TTTCACTGGACATGGTGCAG+TGG - Chr4:70657186-70657205 MsG0480022286.01.T01:intron 50.0%
! CTCTCCTGTGTCCTTTTCAC+TGG - Chr4:70657172-70657191 MsG0480022286.01.T01:intron 50.0%
! TCTTCAACTCCTGGCATTGG+TGG - Chr4:70658484-70658503 MsG0480022286.01.T01:intron 50.0%
! TGTAGTCATTGGTGCCTACC+AGG - Chr4:70659295-70659314 MsG0480022286.01.T01:intron 50.0%
! TGTTGGTAGAGTGCTTACGC+TGG - Chr4:70658416-70658435 MsG0480022286.01.T01:intron 50.0%
!! ATTGACCACTTGGGCTGGTT+GGG - Chr4:70658844-70658863 MsG0480022286.01.T01:intron 50.0%
AACAGATCCCCTGCAGTGAC+TGG + Chr4:70657296-70657315 None:intergenic 55.0%
AAGGGATTGACCACTTGGGC+TGG - Chr4:70658839-70658858 MsG0480022286.01.T01:intron 55.0%
AGTGAGGGACATGGACCGTT+TGG - Chr4:70658805-70658824 MsG0480022286.01.T01:intron 55.0%
AGTGTGGATCCACCAATGCC+AGG + Chr4:70658496-70658515 None:intergenic 55.0%
ATCAACCCAACCAGCCCAAG+TGG + Chr4:70658852-70658871 None:intergenic 55.0%
GTGGTGTAGGTTCAGTGGAG+AGG - Chr4:70656338-70656357 MsG0480022286.01.T01:intron 55.0%
TCTCCTTGAATCCAGAGGGC+AGG - Chr4:70659060-70659079 MsG0480022286.01.T01:CDS 55.0%
TGGACTCTCCAGTCACTGCA+GGG - Chr4:70657285-70657304 MsG0480022286.01.T01:intron 55.0%
!! GATTGACCACTTGGGCTGGT+TGG - Chr4:70658843-70658862 MsG0480022286.01.T01:intron 55.0%
!! TGGCATTGGTGGATCCACAC+TGG - Chr4:70658495-70658514 MsG0480022286.01.T01:intron 55.0%
AGGTAGAGGGGCCGGATATG+TGG + Chr4:70659140-70659159 None:intergenic 60.0%
CTGGACTCTCCAGTCACTGC+AGG - Chr4:70657284-70657303 MsG0480022286.01.T01:intron 60.0%
GGACTCTCCAGTCACTGCAG+GGG - Chr4:70657286-70657305 MsG0480022286.01.T01:intron 60.0%
TTTGCAGGAGGTAGAGGGGC+CGG + Chr4:70659148-70659167 None:intergenic 60.0%
GGGGCCGGATATGTGGTTCC+CGG + Chr4:70659133-70659152 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 70655898 70659530 70655898 ID=MsG0480022286.01;Name=MsG0480022286.01
Chr4 mRNA 70655898 70659530 70655898 ID=MsG0480022286.01.T01;Parent=MsG0480022286.01;Name=MsG0480022286.01.T01;_AED=0.43;_eAED=0.43;_QI=0|1|0.8|1|1|1|5|164|332
Chr4 exon 70659334 70659530 70659334 ID=MsG0480022286.01.T01:exon:28256;Parent=MsG0480022286.01.T01
Chr4 exon 70658910 70659081 70658910 ID=MsG0480022286.01.T01:exon:28257;Parent=MsG0480022286.01.T01
Chr4 exon 70656899 70657077 70656899 ID=MsG0480022286.01.T01:exon:28258;Parent=MsG0480022286.01.T01
Chr4 exon 70656495 70656653 70656495 ID=MsG0480022286.01.T01:exon:28259;Parent=MsG0480022286.01.T01
Chr4 exon 70655898 70656353 70655898 ID=MsG0480022286.01.T01:exon:28260;Parent=MsG0480022286.01.T01
Chr4 CDS 70659334 70659530 70659334 ID=MsG0480022286.01.T01:cds;Parent=MsG0480022286.01.T01
Chr4 CDS 70658910 70659081 70658910 ID=MsG0480022286.01.T01:cds;Parent=MsG0480022286.01.T01
Chr4 CDS 70656899 70657077 70656899 ID=MsG0480022286.01.T01:cds;Parent=MsG0480022286.01.T01
Chr4 CDS 70656495 70656653 70656495 ID=MsG0480022286.01.T01:cds;Parent=MsG0480022286.01.T01
Chr4 CDS 70656062 70656353 70656062 ID=MsG0480022286.01.T01:cds;Parent=MsG0480022286.01.T01
Chr4 three_prime_UTR 70655898 70656061 70655898 ID=MsG0480022286.01.T01:three_prime_utr;Parent=MsG0480022286.01.T01
Gene Sequence

>MsG0480022286.01.T01

ATGCACCCAGCAAGGGCACAAAAGTCAAATAATTGTAATTTGTTCTTTGGAAGCTGGGTGATTGACTCTTCATATCCTCTCTATGATTCTTCAAGCTGTCCCTTCGTTGAAGCTCAGTTTGATTGCCAAATATATGGAAGACCTGATAATCAGTATCTTAAATACTCTTGGAAGCCTGATTTATGTGCTTTACCCAGGTTCAGTGGAGAGGATTTTTTGAATAGGTGGAAGGATAAGAAGATAATGTTTGTAGGTGATTCATTGAGTCTAAACATGTGGGAATCATTGTCTTGTATGATTCATGCGTCGGTTCCTAATGTCACTACAAGCTTTTCTAGGAAAGAACCAATGTCTACTGTCTTCTTCCAGGACTATGGAGTAACCATACAACTATACCGTACACCATATTTGGTGGATATAATAATTCAAGAAGATGTTGGTAGAGTGCTTACGCTGGACTCTATAAAAGCTGGTAAAGCATGGTTAGACATGGACATGTTGATCTTCAACTCCTGGCATTGGTGGATCCACACTGGAGATTTACGAGGGTGGGATTTTATCAGAGATGGTTCTAATCTAGTGAGGGACATGGACCGTTTGGATGCATTTTATAAGGGATTGACCACTTGGGCTGGTTGGGTTGATGCAAATGTTGACCCTACTAAAACTAAACTATTCTTTCAAGGAATTTCCCCTACTCATAACAAAGGGCAGGATTGGAATGAACCGAAGAAGACATGTAGCGGGGAAGTTGAACCATTACCGGGAACCACATATCCGGCCCCTCTACCTCCTGCAAATGATGTAGTGAACAAAGTGTTAAAGAACATGAAGAAGCAGGTTTATCTACTTGACATAACACTTCTCTCACAACTAAGAAAAGATGCACATCCTTCTATCTATACTAAGGATCCAACTGGCATTGATTGTAGTCATTGGTGCCTACCAGGACTACCTGATACTTGGAACATACTCCTAAATGCAGCTCTAATCATGTGA

Protein sequence

>MsG0480022286.01.T01

MHPARAQKSNNCNLFFGSWVIDSSYPLYDSSSCPFVEAQFDCQIYGRPDNQYLKYSWKPDLCALPRFSGEDFLNRWKDKKIMFVGDSLSLNMWESLSCMIHASVPNVTTSFSRKEPMSTVFFQDYGVTIQLYRTPYLVDIIIQEDVGRVLTLDSIKAGKAWLDMDMLIFNSWHWWIHTGDLRGWDFIRDGSNLVRDMDRLDAFYKGLTTWAGWVDANVDPTKTKLFFQGISPTHNKGQDWNEPKKTCSGEVEPLPGTTYPAPLPPANDVVNKVLKNMKKQVYLLDITLLSQLRKDAHPSIYTKDPTGIDCSHWCLPGLPDTWNILLNAALIM*