AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041978.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041978.01.T01 MTR_8g008500 94.014 284 17 0 1 284 1 284 0.0 550
MsG0880041978.01.T01 MTR_8g008505 85.263 285 37 3 1 284 1 281 5.58e-179 494
MsG0880041978.01.T01 MTR_8g008660 78.521 284 55 2 1 284 1 278 1.51e-161 450
MsG0880041978.01.T01 MTR_3g464040 75.362 276 62 2 9 284 1 270 5.99e-148 415
MsG0880041978.01.T01 MTR_8g007675 68.605 258 78 2 27 284 32 286 2.69e-128 366
MsG0880041978.01.T01 MTR_8g007670 56.154 260 110 3 26 284 6 262 5.32e-102 298
MsG0880041978.01.T01 MTR_5g018320 54.962 262 113 4 24 284 2 259 2.62e-96 284
MsG0880041978.01.T01 MTR_5g018300 53.846 260 115 4 26 284 7 262 5.17e-95 281
MsG0880041978.01.T01 MTR_5g018280 52.692 260 117 5 26 284 7 261 1.53e-90 270
MsG0880041978.01.T01 MTR_8g007670 48.846 260 85 3 26 284 6 218 6.81e-83 248
MsG0880041978.01.T01 MTR_8g079120 39.768 259 148 5 26 284 10 260 2.12e-60 192
MsG0880041978.01.T01 MTR_5g018365 40.385 260 145 6 26 284 11 261 1.28e-57 186
MsG0880041978.01.T01 MTR_5g018350 39.535 258 148 5 27 284 7 256 2.60e-55 179
MsG0880041978.01.T01 MTR_5g068100 37.838 259 154 4 26 284 29 280 2.94e-50 167
MsG0880041978.01.T01 MTR_3g093730 37.838 259 147 5 26 281 35 282 7.06e-46 156
MsG0880041978.01.T01 MTR_7g015220 37.247 247 148 4 27 273 124 363 2.91e-43 151
MsG0880041978.01.T01 MTR_8g079120 43.114 167 90 3 26 192 52 213 8.22e-41 140
MsG0880041978.01.T01 MTR_3g005410 32.171 258 167 4 26 282 93 343 4.61e-38 137
MsG0880041978.01.T01 MTR_5g008130 74.684 79 20 0 206 284 2 80 5.13e-37 126
MsG0880041978.01.T01 MTR_3g093730 33.460 263 108 7 26 281 35 237 2.48e-33 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041978.01.T01 AT2G23610 42.857 259 144 3 26 284 8 262 1.92e-66 208
MsG0880041978.01.T01 AT3G50440 41.245 257 147 3 28 284 22 274 2.11e-66 208
MsG0880041978.01.T01 AT2G23620 42.264 265 137 5 26 284 8 262 7.95e-63 199
MsG0880041978.01.T01 AT2G23600 41.699 259 147 3 26 284 8 262 9.18e-62 196
MsG0880041978.01.T01 AT2G23600 41.699 259 147 3 26 284 23 277 1.36e-61 196
MsG0880041978.01.T01 AT2G23580 42.803 264 142 7 24 284 5 262 1.66e-61 196
MsG0880041978.01.T01 AT4G37150 40.996 261 145 6 26 284 2 255 6.46e-56 181
MsG0880041978.01.T01 AT2G23590 38.989 277 149 8 15 284 8 271 8.84e-56 181
MsG0880041978.01.T01 AT2G23560 39.394 264 148 6 24 284 5 259 5.06e-53 174
MsG0880041978.01.T01 AT2G23550 39.259 270 143 8 24 284 12 269 6.12e-53 174
MsG0880041978.01.T01 AT2G23550 39.259 270 143 8 24 284 5 262 6.57e-53 174
MsG0880041978.01.T01 AT2G23610 37.838 259 112 4 26 284 8 217 7.68e-50 164
MsG0880041978.01.T01 AT1G26360 37.023 262 156 5 22 282 184 437 3.27e-47 164
MsG0880041978.01.T01 AT5G58310 34.340 265 153 7 27 281 5 258 5.10e-47 158
MsG0880041978.01.T01 AT1G33990 35.249 261 155 5 26 282 96 346 7.56e-47 160
MsG0880041978.01.T01 AT4G16690 36.293 259 146 8 27 280 12 256 3.28e-46 156
MsG0880041978.01.T01 AT4G09900 34.483 261 157 5 26 282 97 347 3.93e-46 158
MsG0880041978.01.T01 AT3G10870 35.686 255 160 3 27 281 20 270 6.04e-46 156
MsG0880041978.01.T01 AT5G10300 36.822 258 157 5 27 284 6 257 8.77e-46 155
MsG0880041978.01.T01 AT1G69240 36.502 263 158 6 22 282 182 437 1.22e-45 159
MsG0880041978.01.T01 AT3G29770 38.077 260 146 6 27 282 138 386 7.51e-43 151
MsG0880041978.01.T01 AT2G23600 45.122 164 89 1 26 189 23 185 1.55e-42 144
MsG0880041978.01.T01 AT2G23550 34.944 269 127 7 24 284 5 233 1.93e-40 140
MsG0880041978.01.T01 AT2G23580 45.181 166 87 4 24 187 5 168 9.70e-39 135
MsG0880041978.01.T01 AT4G37140 51.429 105 50 1 26 130 2 105 2.22e-34 122
MsG0880041978.01.T01 AT5G10300 40.606 165 95 3 27 191 6 167 3.11e-32 118
MsG0880041978.01.T01 AT2G23550 41.279 172 85 5 24 187 12 175 3.62e-32 118
MsG0880041978.01.T01 AT4G37140 50.000 92 45 1 26 117 2 92 1.43e-28 105
MsG0880041978.01.T01 AT2G23570 35.912 181 113 2 104 284 1 178 4.98e-27 103
MsG0880041978.01.T01 AT3G29770 48.649 74 37 1 27 100 138 210 1.10e-16 78.6

Find 64 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCTTTGATATCATTTA+TGG 0.078023 8:-2054805 MsG0880041978.01.T01:CDS
CCTCCAACTGCCTTGTTGTT+TGG 0.223716 8:-2053964 MsG0880041978.01.T01:CDS
ATTCTTGTGGGTCATAGTTT+TGG 0.257233 8:-2054756 MsG0880041978.01.T01:CDS
TTAGAGAGGATCTGCAATTA+TGG 0.262915 8:-2050273 MsG0880041978.01.T01:CDS
CCACAGTTATTCTTCGTTGA+TGG 0.287023 8:-2053997 MsG0880041978.01.T01:CDS
GAAGTAAACTTGTGAAATTA+AGG 0.289248 8:+2054646 None:intergenic
TAATGTTAGCACAATTGATT+TGG 0.307926 8:-2054889 MsG0880041978.01.T01:CDS
CAGATTAGATGCCAAGAGTT+TGG 0.316731 8:+2053939 None:intergenic
ATCACTTTCACTTCAACATA+TGG 0.320896 8:+2050232 None:intergenic
TTGGAAATAATGAAGACTTT+TGG 0.329148 8:+2050310 None:intergenic
TGAATCTCTTGGACCTGTAT+TGG 0.346355 8:+2054849 None:intergenic
ACAAGAATCACCTTCTCCTT+TGG 0.362247 8:+2054771 None:intergenic
TCTAATGAAAATGTCTCCTT+TGG 0.376102 8:+2050291 None:intergenic
ACAATTGATTTGGCTGCTTC+AGG 0.377565 8:-2054879 MsG0880041978.01.T01:CDS
TACCCTTCCATTCCTCTGCT+TGG 0.389684 8:+2050333 None:intergenic
AAGGCAGTTGGAGGACTGTT+TGG 0.392141 8:+2053973 None:intergenic
TTTGTGCTGGTTCATGGAGC+TGG 0.395217 8:-2054966 MsG0880041978.01.T01:CDS
TATAATATATCATGATCAAC+CGG 0.397658 8:-2055058 None:intergenic
TGTTGAAGTGAAAGTGATAA+AGG 0.400092 8:-2050227 MsG0880041978.01.T01:CDS
TGGTGCATGGTGTTGGTATA+AGG 0.400591 8:-2054940 MsG0880041978.01.T01:CDS
AAGATTAAATTCCAGTCAAC+AGG 0.402609 8:-2054025 MsG0880041978.01.T01:CDS
AAGCACTTTGTGCTGGTTCA+TGG 0.404341 8:-2054972 MsG0880041978.01.T01:CDS
AAATATTTGAATGAATCTCT+TGG 0.405238 8:+2054838 None:intergenic
TCAACACAACGTGTCTTTCC+CGG 0.413855 8:+2055039 None:intergenic
TTTGACACTTGGGTCATCAT+TGG 0.414427 8:-2050413 MsG0880041978.01.T01:CDS
GTTGTTTGGATCCAAACTCT+TGG 0.434228 8:-2053950 MsG0880041978.01.T01:CDS
CATGCGCAGGATTTGACACT+TGG 0.438141 8:-2050424 MsG0880041978.01.T01:intron
AGAATCACCTTCTCCTTTGG+AGG 0.473413 8:+2054774 None:intergenic
AGCAGTCTTTAGAATGTAAG+AGG 0.485742 8:+2050162 None:intergenic
TTTCACAAGTTTACTTCAAG+AGG 0.488532 8:-2054640 MsG0880041978.01.T01:intron
GATACCCTTATCTGTTGCTA+TGG 0.489986 8:-2054730 MsG0880041978.01.T01:CDS
AAGGAGAAGGTGATTCTTGT+GGG 0.501737 8:-2054768 MsG0880041978.01.T01:CDS
ATGGAGCTGGCCATGGTGCA+TGG 0.509766 8:-2054953 MsG0880041978.01.T01:CDS
CTGGTTCATGGAGCTGGCCA+TGG 0.510636 8:-2054960 MsG0880041978.01.T01:CDS
GCAACTATGCTTAAATCAGC+TGG 0.513884 8:-2054915 MsG0880041978.01.T01:CDS
TTCAGGTATCAATCCAATAC+AGG 0.517321 8:-2054862 MsG0880041978.01.T01:CDS
TATGGATTCTCTTCCTCCAA+AGG 0.520377 8:-2054787 MsG0880041978.01.T01:CDS
AAAGTCTTCATTATTTCCAA+AGG 0.521901 8:-2050307 MsG0880041978.01.T01:CDS
GATCCAAACAACAAGGCAGT+TGG 0.527636 8:+2053961 None:intergenic
TTATGGATAATTGAGAGAAC+GGG 0.528041 8:-2050256 MsG0880041978.01.T01:CDS
CTGGCCATGGTGCATGGTGT+TGG 0.530072 8:-2054947 MsG0880041978.01.T01:CDS
TAATGGAAAGCACTTTGTGC+TGG 0.531008 8:-2054979 MsG0880041978.01.T01:CDS
TCATCATTAAAGATAGGATG+TGG 0.533060 8:+2050385 None:intergenic
AGGGTTACCAAGCAGAGGAA+TGG 0.542457 8:-2050340 MsG0880041978.01.T01:CDS
ATTATGGATAATTGAGAGAA+CGG 0.544632 8:-2050257 MsG0880041978.01.T01:CDS
AAAGGAGAAGGTGATTCTTG+TGG 0.544745 8:-2054769 MsG0880041978.01.T01:CDS
GTATCAATTATCGCCTAATG+AGG 0.552044 8:-2053917 MsG0880041978.01.T01:intron
TTCTCTTCCTCCAAAGGAGA+AGG 0.557078 8:-2054781 MsG0880041978.01.T01:CDS
CTGTGGTGGATCCTGTTGAC+TGG 0.559384 8:+2054014 None:intergenic
CCAAACAACAAGGCAGTTGG+AGG 0.578597 8:+2053964 None:intergenic
AACTGGTGTTGAAAGAAACA+AGG 0.585681 8:-2050360 MsG0880041978.01.T01:CDS
TTACCAAGCAGAGGAATGGA+AGG 0.593361 8:-2050336 MsG0880041978.01.T01:CDS
CACTTGGGTCATCATTGGTG+AGG 0.603881 8:-2050408 MsG0880041978.01.T01:CDS
GAATCCATAAATGATATCAA+AGG 0.609540 8:+2054801 None:intergenic
ATGCGCAGGATTTGACACTT+GGG 0.634134 8:-2050423 MsG0880041978.01.T01:intron
TCAACGAAGAATAACTGTGG+TGG 0.645816 8:+2054000 None:intergenic
AAACAAGGGTTACCAAGCAG+AGG 0.650857 8:-2050345 MsG0880041978.01.T01:CDS
ACTGGTGTTGAAAGAAACAA+GGG 0.655045 8:-2050359 MsG0880041978.01.T01:CDS
GATAAAGGATTCAGATCACA+TGG 0.658047 8:-2050212 MsG0880041978.01.T01:CDS
TATACCAACACCATGCACCA+TGG 0.666354 8:+2054943 None:intergenic
GAGTTTGGATCCAAACAACA+AGG 0.680669 8:+2053954 None:intergenic
TACCAAGCAGAGGAATGGAA+GGG 0.694878 8:-2050335 MsG0880041978.01.T01:CDS
ATAATATATCATGATCAACC+GGG 0.697167 8:-2055057 None:intergenic
CCATCAACGAAGAATAACTG+TGG 0.723153 8:+2053997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTAATAAAAATT+AGG - Chr8:2050751-2050770 MsG0880041978.01.T01:intron 0.0%
!!! TTTAAATTTTTAAATATTAA+TGG + Chr8:2054022-2054041 None:intergenic 0.0%
!! AAAAAAATAATCAAATTCAA+AGG + Chr8:2050795-2050814 None:intergenic 10.0%
!! AATATAAATATATATAACCA+TGG + Chr8:2050741-2050760 None:intergenic 10.0%
!! AATCCAAAATTAAAATTATT+AGG - Chr8:2050932-2050951 MsG0880041978.01.T01:intron 10.0%
!! ATCCAAAATTAAAATTATTA+GGG - Chr8:2050933-2050952 MsG0880041978.01.T01:intron 10.0%
!! CAAAAAATAATGTTAAAAAT+TGG - Chr8:2052127-2052146 MsG0880041978.01.T01:intron 10.0%
!! CCATATTATATTATATTATA+AGG - Chr8:2054514-2054533 MsG0880041978.01.T01:intron 10.0%
!! CCTTATAATATAATATAATA+TGG + Chr8:2054517-2054536 None:intergenic 10.0%
!! TAAAAAATAATGCTAAATAT+TGG - Chr8:2053270-2053289 MsG0880041978.01.T01:intron 10.0%
!!! ATTACTAATATTTTTATAAG+AGG + Chr8:2052479-2052498 None:intergenic 10.0%
!!! CTATTTGTATTTAAAATTAA+GGG + Chr8:2051409-2051428 None:intergenic 10.0%
!! AAAAACCTAAAATACTTTAA+TGG - Chr8:2051041-2051060 MsG0880041978.01.T01:intron 15.0%
!! CAAAAAATAATGTTAAAGAT+TGG - Chr8:2052065-2052084 MsG0880041978.01.T01:intron 15.0%
!! CAAAAAATATTGTTAAAGAT+TGG - Chr8:2052001-2052020 MsG0880041978.01.T01:intron 15.0%
!! CAAAATATTATGTTAAAGAT+TGG - Chr8:2053654-2053673 MsG0880041978.01.T01:intron 15.0%
!! CTGTTAAAAATAATTTATCT+AGG - Chr8:2054331-2054350 MsG0880041978.01.T01:intron 15.0%
!! TAATATAATATGGTATGTTA+AGG + Chr8:2054507-2054526 None:intergenic 15.0%
!!! AAAATCCATTAAAGTATTTT+AGG + Chr8:2051049-2051068 None:intergenic 15.0%
!!! AAATGTTGTTTTTTTAAAAC+TGG + Chr8:2050873-2050892 None:intergenic 15.0%
!!! AACCCTAATAATTTTAATTT+TGG + Chr8:2050938-2050957 None:intergenic 15.0%
!!! AATGTTGTTTTTTTAAAACT+GGG + Chr8:2050872-2050891 None:intergenic 15.0%
!!! ATCAAAGTTGATTAATTTTA+TGG - Chr8:2052695-2052714 MsG0880041978.01.T01:intron 15.0%
!!! GATTTTGAATCATAATATTT+TGG + Chr8:2052510-2052529 None:intergenic 15.0%
!!! GCTATTTGTATTTAAAATTA+AGG + Chr8:2051410-2051429 None:intergenic 15.0%
!!! GGATTTTAATTTCTAATAAA+AGG + Chr8:2050917-2050936 None:intergenic 15.0%
!!! GTTACTAATCTTTTTTTTAT+AGG + Chr8:2053241-2053260 None:intergenic 15.0%
!!! TAAAAAATAATGGAAAAGAT+TGG - Chr8:2053206-2053225 MsG0880041978.01.T01:intron 15.0%
!!! TAAATCCTCTAAAAAAAATT+AGG - Chr8:2053297-2053316 MsG0880041978.01.T01:intron 15.0%
!!! TATTACTAATCTTTTTTTAG+AGG + Chr8:2053367-2053386 None:intergenic 15.0%
!!! TGTTACTAATATATTTTTAG+AGG + Chr8:2053494-2053513 None:intergenic 15.0%
!!! TGTTACTAATATTTTTTTAG+AGG + Chr8:2052324-2052343 None:intergenic 15.0%
!!! TGTTACTAATTTTTTTTTAG+AGG + Chr8:2051973-2051992 None:intergenic 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG + Chr8:2051400-2051419 None:intergenic 15.0%
!!! TTTATTCTTTCATTTTTCAT+TGG - Chr8:2050192-2050211 MsG0880041978.01.T01:CDS 15.0%
!!! TTTGTTACTAATATTTTTAG+AGG + Chr8:2053689-2053708 None:intergenic 15.0%
!! AAATATTTGAATGAATCTCT+TGG + Chr8:2050362-2050381 None:intergenic 20.0%
!! AATAAAGTCAAAATATGTGA+TGG - Chr8:2050613-2050632 MsG0880041978.01.T01:intron 20.0%
!! ACAAAAAAAATTACCTCATT+AGG + Chr8:2051296-2051315 None:intergenic 20.0%
!! CAAATGTAGAAATAATGTAT+TGG - Chr8:2054576-2054595 MsG0880041978.01.T01:intron 20.0%
!! GAGCAAAAATTAATGTTAAA+GGG - Chr8:2053712-2053731 MsG0880041978.01.T01:intron 20.0%
!! TATCTTTAATGATGAAAAAC+TGG - Chr8:2054820-2054839 MsG0880041978.01.T01:CDS 20.0%
!! TCCTTAAAAAAGAATAAACT+CGG - Chr8:2051008-2051027 MsG0880041978.01.T01:intron 20.0%
!! TCTATTATTCAAGAAAAAGA+GGG + Chr8:2050652-2050671 None:intergenic 20.0%
!! TGAGCAAAAATTAATGTTAA+AGG - Chr8:2053711-2053730 MsG0880041978.01.T01:intron 20.0%
!! TGTTACTAATATTCTATTAG+AGG + Chr8:2052387-2052406 None:intergenic 20.0%
!! TTCTATTATTCAAGAAAAAG+AGG + Chr8:2050653-2050672 None:intergenic 20.0%
!!! AAATATGTGATGGATTAATA+AGG - Chr8:2050623-2050642 MsG0880041978.01.T01:intron 20.0%
!!! AGTTTTTCATCATTAAAGAT+AGG + Chr8:2054821-2054840 None:intergenic 20.0%
!!! ATATGGAATACTATTTTTTG+TGG + Chr8:2053128-2053147 None:intergenic 20.0%
!!! CAATACATTATTTCTACATT+TGG + Chr8:2054578-2054597 None:intergenic 20.0%
!!! CTGAGTTTTAATTTTAATTG+TGG - Chr8:2051082-2051101 MsG0880041978.01.T01:intron 20.0%
!!! GTTACTAATATTTTTATCAG+AGG + Chr8:2052162-2052181 None:intergenic 20.0%
!!! GTTACTAATATTTTTTTCAG+AGG + Chr8:2053625-2053644 None:intergenic 20.0%
!!! GTTACTAATCTTTTTTTTAG+AGG + Chr8:2052036-2052055 None:intergenic 20.0%
!!! TCCACGTATTATTTTATAAT+TGG + Chr8:2052922-2052941 None:intergenic 20.0%
!!! TGTTACTAATCTTTTATTAG+AGG + Chr8:2052100-2052119 None:intergenic 20.0%
!!! TTGTTCCTAATTTTTTTTAG+AGG + Chr8:2053305-2053324 None:intergenic 20.0%
!!! TTTTTTGTGAGTTTGATATT+TGG + Chr8:2052998-2053017 None:intergenic 20.0%
! AAAGTCTTCATTATTTCCAA+AGG - Chr8:2054890-2054909 MsG0880041978.01.T01:CDS 25.0%
! AAGATATTCAATTCATGAAG+TGG + Chr8:2051706-2051725 None:intergenic 25.0%
! AATAGAATAAAGTCTTGATC+TGG - Chr8:2050666-2050685 MsG0880041978.01.T01:intron 25.0%
! ACAAAAGTTCTCATTAATGA+AGG - Chr8:2053831-2053850 MsG0880041978.01.T01:intron 25.0%
! ATGAAAGGAAAAAAACTTAC+AGG + Chr8:2052665-2052684 None:intergenic 25.0%
! ATTATGGATAATTGAGAGAA+CGG - Chr8:2054940-2054959 MsG0880041978.01.T01:CDS 25.0%
! CAAACGTGAGTAAAAAATAA+TGG - Chr8:2053196-2053215 MsG0880041978.01.T01:intron 25.0%
! CATTGAATGGAATATCTTTA+AGG - Chr8:2051679-2051698 MsG0880041978.01.T01:intron 25.0%
! CGATTAAACTTCAAATCATT+AGG - Chr8:2054412-2054431 MsG0880041978.01.T01:intron 25.0%
! GAAGTAAACTTGTGAAATTA+AGG + Chr8:2050554-2050573 None:intergenic 25.0%
! GAATCCATAAATGATATCAA+AGG + Chr8:2050399-2050418 None:intergenic 25.0%
! GCCAATTATAAAATAATACG+TGG - Chr8:2052918-2052937 MsG0880041978.01.T01:intron 25.0%
! TAATGTTAGCACAATTGATT+TGG - Chr8:2050308-2050327 MsG0880041978.01.T01:CDS 25.0%
! TGAACCTTTGATATCATTTA+TGG - Chr8:2050392-2050411 MsG0880041978.01.T01:CDS 25.0%
! TTAAACTTCAAATCATTAGG+AGG - Chr8:2054415-2054434 MsG0880041978.01.T01:intron 25.0%
! TTACAATTGATCAAAGACTA+AGG + Chr8:2053176-2053195 None:intergenic 25.0%
! TTGAGAAAAACTAAACAATG+CGG + Chr8:2052606-2052625 None:intergenic 25.0%
! TTTGTTAGCGCTATATTAAA+TGG - Chr8:2052226-2052245 MsG0880041978.01.T01:intron 25.0%
!! GCAGGAAAAAACATAAATTT+TGG + Chr8:2051871-2051890 None:intergenic 25.0%
!! TAAGAATTATTTGACTTTGC+TGG - Chr8:2052776-2052795 MsG0880041978.01.T01:intron 25.0%
!! TTGATTAGTTGTAACATGAA+AGG + Chr8:2052680-2052699 None:intergenic 25.0%
!! TTGGAAATAATGAAGACTTT+TGG + Chr8:2054890-2054909 None:intergenic 25.0%
!!! AGTATTTTAGGTTTTTTCAG+AGG + Chr8:2051037-2051056 None:intergenic 25.0%
!!! GAATACTATTTTTTGTGGAA+GGG + Chr8:2053123-2053142 None:intergenic 25.0%
!!! GGAACTTTCTAATTTTTTAG+AGG + Chr8:2051623-2051642 None:intergenic 25.0%
!!! TCCACGTGTTATTTTATAAT+TGG + Chr8:2051432-2051451 None:intergenic 25.0%
!!! TCCGAGTTTATTCTTTTTTA+AGG + Chr8:2051012-2051031 None:intergenic 25.0%
!!! TGATTTTGATCTGTTGTTAA+CGG + Chr8:2051501-2051520 None:intergenic 25.0%
AAAATCTATAAGCACACCTT+TGG - Chr8:2052849-2052868 MsG0880041978.01.T01:intron 30.0%
AAATCTATAAGCACACCTTT+GGG - Chr8:2052850-2052869 MsG0880041978.01.T01:intron 30.0%
AACAAAAATAATAGCCGATG+AGG - Chr8:2051933-2051952 MsG0880041978.01.T01:intron 30.0%
AAGATTAAATTCCAGTCAAC+AGG - Chr8:2051172-2051191 MsG0880041978.01.T01:intron 30.0%
ACAGATGTACAACATAAAAG+CGG + Chr8:2053052-2053071 None:intergenic 30.0%
ATCACTTTCACTTCAACATA+TGG + Chr8:2054968-2054987 None:intergenic 30.0%
ATGGTTACTAACATCTACAA+TGG + Chr8:2050722-2050741 None:intergenic 30.0%
ATTAATGAAGGACAAACAGA+AGG - Chr8:2053843-2053862 MsG0880041978.01.T01:intron 30.0%
ATTGTAGATGTTAGTAACCA+TGG - Chr8:2050721-2050740 MsG0880041978.01.T01:intron 30.0%
ATTTATAGTCCAATCCTCAT+CGG + Chr8:2051950-2051969 None:intergenic 30.0%
CAAAGCTTGAATTGTAATGT+TGG + Chr8:2051761-2051780 None:intergenic 30.0%
GCCAATTATAAAATAACACG+TGG - Chr8:2051428-2051447 MsG0880041978.01.T01:intron 30.0%
GTTTGATATTTGGTTAACAG+AGG + Chr8:2052988-2053007 None:intergenic 30.0%
TAATCTTCTCTGATTCTATG+AGG + Chr8:2051159-2051178 None:intergenic 30.0%
TCATCATTAAAGATAGGATG+TGG + Chr8:2054815-2054834 None:intergenic 30.0%
TCTAATGAAAATGTCTCCTT+TGG + Chr8:2054909-2054928 None:intergenic 30.0%
TGTTGAAGTGAAAGTGATAA+AGG - Chr8:2054970-2054989 MsG0880041978.01.T01:CDS 30.0%
TTATGGATAATTGAGAGAAC+GGG - Chr8:2054941-2054960 MsG0880041978.01.T01:CDS 30.0%
TTTCACAAGTTTACTTCAAG+AGG - Chr8:2050557-2050576 MsG0880041978.01.T01:intron 30.0%
TTTCTAAACTTGTGTCGTAA+GGG + Chr8:2054555-2054574 None:intergenic 30.0%
! ACTGCAAGAGAAATTTTCTT+AGG + Chr8:2050501-2050520 None:intergenic 30.0%
! ATCTTTGTCGATTGTATTGA+AGG + Chr8:2053082-2053101 None:intergenic 30.0%
! ATGTAAGAGGTAAGCTTTTT+AGG + Chr8:2055025-2055044 None:intergenic 30.0%
! CTGCAAGAGAAATTTTCTTA+GGG + Chr8:2050500-2050519 None:intergenic 30.0%
! TATGGATTATTTGACTTTGC+TGG - Chr8:2052713-2052732 MsG0880041978.01.T01:intron 30.0%
! TCTTTGTCGATTGTATTGAA+GGG + Chr8:2053081-2053100 None:intergenic 30.0%
! TTTTCCATAGCAACAGATAA+GGG + Chr8:2050474-2050493 None:intergenic 30.0%
!!! GGAATACTATTTTTTGTGGA+AGG + Chr8:2053124-2053143 None:intergenic 30.0%
!!! TCATTTTTCATTGGTGCTAA+TGG - Chr8:2050201-2050220 MsG0880041978.01.T01:CDS 30.0%
AAATAATAGCCGATGAGGAT+TGG - Chr8:2051938-2051957 MsG0880041978.01.T01:intron 35.0%
AATTCTGAATTCTGATGCAG+AGG + Chr8:2052640-2052659 None:intergenic 35.0%
ACATTGAAGCCAATCATTGA+TGG - Chr8:2054747-2054766 MsG0880041978.01.T01:CDS 35.0%
AGAATAAAGTCTTGATCTGG+TGG - Chr8:2050669-2050688 MsG0880041978.01.T01:intron 35.0%
AGACTGCTCACAAATATTAG+AGG - Chr8:2055050-2055069 MsG0880041978.01.T01:CDS 35.0%
AGCTTGAATTGTAATGTTGG+CGG + Chr8:2051758-2051777 None:intergenic 35.0%
AGTGTTAACTTCTGTCCTTA+GGG + Chr8:2054693-2054712 None:intergenic 35.0%
ATAGATTTCGACATTGGGAA+TGG + Chr8:2053742-2053761 None:intergenic 35.0%
ATTCTGAATTCTGATGCAGA+GGG + Chr8:2052639-2052658 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG - Chr8:2054675-2054694 MsG0880041978.01.T01:CDS 35.0%
GAATAAAGTCTTGATCTGGT+GGG - Chr8:2050670-2050689 MsG0880041978.01.T01:intron 35.0%
GATAAAGGATTCAGATCACA+TGG - Chr8:2054985-2055004 MsG0880041978.01.T01:CDS 35.0%
GGAAGATAGATTTCGACATT+GGG + Chr8:2053747-2053766 None:intergenic 35.0%
GTATCAATTATCGCCTAATG+AGG - Chr8:2051280-2051299 MsG0880041978.01.T01:intron 35.0%
GTTTCTAAACTTGTGTCGTA+AGG + Chr8:2054556-2054575 None:intergenic 35.0%
TAGTGTTAACTTCTGTCCTT+AGG + Chr8:2054694-2054713 None:intergenic 35.0%
TGGAAGATAGATTTCGACAT+TGG + Chr8:2053748-2053767 None:intergenic 35.0%
TGGTTAACAGAGGTAAAAGA+GGG + Chr8:2052978-2052997 None:intergenic 35.0%
TTAGAGAGGATCTGCAATTA+TGG - Chr8:2054924-2054943 MsG0880041978.01.T01:CDS 35.0%
TTCAGGTATCAATCCAATAC+AGG - Chr8:2050335-2050354 MsG0880041978.01.T01:CDS 35.0%
TTGGTTAACAGAGGTAAAAG+AGG + Chr8:2052979-2052998 None:intergenic 35.0%
! AACTGGTGTTGAAAGAAACA+AGG - Chr8:2054837-2054856 MsG0880041978.01.T01:CDS 35.0%
! ACTGGTGTTGAAAGAAACAA+GGG - Chr8:2054838-2054857 MsG0880041978.01.T01:CDS 35.0%
! AGGAGACATTTTCATTAGAG+AGG - Chr8:2054910-2054929 MsG0880041978.01.T01:CDS 35.0%
! ATTCTTGTGGGTCATAGTTT+TGG - Chr8:2050441-2050460 MsG0880041978.01.T01:intron 35.0%
! CTTTTCCATAGCAACAGATA+AGG + Chr8:2050475-2050494 None:intergenic 35.0%
! TAATCAATTTTCGTGAGCGT+TGG + Chr8:2051644-2051663 None:intergenic 35.0%
!! AAGGGTACTATGATGAATTC+TGG + Chr8:2051584-2051603 None:intergenic 35.0%
!! ACTTCTGAAGCATCATTGAA+TGG - Chr8:2051666-2051685 MsG0880041978.01.T01:intron 35.0%
!! AGCAGTCTTTAGAATGTAAG+AGG + Chr8:2055038-2055057 None:intergenic 35.0%
!!! AGAGGTAAGCTTTTTAGGTT+TGG + Chr8:2055020-2055039 None:intergenic 35.0%
AAAGGAGAAGGTGATTCTTG+TGG - Chr8:2050428-2050447 MsG0880041978.01.T01:intron 40.0%
AACGGTGATGATTAGTGACA+TGG + Chr8:2052953-2052972 None:intergenic 40.0%
AAGGAGAAGGTGATTCTTGT+GGG - Chr8:2050429-2050448 MsG0880041978.01.T01:intron 40.0%
ACAAGAATCACCTTCTCCTT+TGG + Chr8:2050429-2050448 None:intergenic 40.0%
AGACTCGTGAGAAATAAAGC+AGG + Chr8:2051889-2051908 None:intergenic 40.0%
CAGAGGTAAAAGAGGGTAAA+CGG + Chr8:2052971-2052990 None:intergenic 40.0%
CAGATTAGATGCCAAGAGTT+TGG + Chr8:2051261-2051280 None:intergenic 40.0%
CCACAGTTATTCTTCGTTGA+TGG - Chr8:2051200-2051219 MsG0880041978.01.T01:intron 40.0%
CCATCAACGAAGAATAACTG+TGG + Chr8:2051203-2051222 None:intergenic 40.0%
CGCATGTAACCATCAATGAT+TGG + Chr8:2054759-2054778 None:intergenic 40.0%
GAAAGAAAAGTCCAACCCAA+AGG + Chr8:2052868-2052887 None:intergenic 40.0%
GAGTTTGGATCCAAACAACA+AGG + Chr8:2051246-2051265 None:intergenic 40.0%
GATACCCTTATCTGTTGCTA+TGG - Chr8:2050467-2050486 MsG0880041978.01.T01:intron 40.0%
GCAACTATGCTTAAATCAGC+TGG - Chr8:2050282-2050301 MsG0880041978.01.T01:CDS 40.0%
GTTGTTTGGATCCAAACTCT+TGG - Chr8:2051247-2051266 MsG0880041978.01.T01:intron 40.0%
TATGGATTCTCTTCCTCCAA+AGG - Chr8:2050410-2050429 MsG0880041978.01.T01:CDS 40.0%
TCAACGAAGAATAACTGTGG+TGG + Chr8:2051200-2051219 None:intergenic 40.0%
TGAATCTCTTGGACCTGTAT+TGG + Chr8:2050351-2050370 None:intergenic 40.0%
TTTGACACTTGGGTCATCAT+TGG - Chr8:2054784-2054803 MsG0880041978.01.T01:CDS 40.0%
! AACCCAAAAGTGTGCTGAAA+GGG + Chr8:2051365-2051384 None:intergenic 40.0%
!! ACAATTGATTTGGCTGCTTC+AGG - Chr8:2050318-2050337 MsG0880041978.01.T01:CDS 40.0%
!! TAATGGAAAGCACTTTGTGC+TGG - Chr8:2050218-2050237 MsG0880041978.01.T01:CDS 40.0%
!!! TTGTGGGTCATAGTTTTGGA+GGG - Chr8:2050445-2050464 MsG0880041978.01.T01:intron 40.0%
AAACAAGGGTTACCAAGCAG+AGG - Chr8:2054852-2054871 MsG0880041978.01.T01:CDS 45.0%
AGAATCACCTTCTCCTTTGG+AGG + Chr8:2050426-2050445 None:intergenic 45.0%
AGGTGATGAGATGCGATCAA+AGG + Chr8:2051603-2051622 None:intergenic 45.0%
ATGCGCAGGATTTGACACTT+GGG - Chr8:2054774-2054793 MsG0880041978.01.T01:CDS 45.0%
CCATGACTGAAAACATGTCG+TGG + Chr8:2053768-2053787 None:intergenic 45.0%
CGTTAGTGCAGTAGAAAGAG+CGG - Chr8:2054089-2054108 MsG0880041978.01.T01:intron 45.0%
CTATAAGCACACCTTTGGGT+TGG - Chr8:2052854-2052873 MsG0880041978.01.T01:intron 45.0%
GATCCAAACAACAAGGCAGT+TGG + Chr8:2051239-2051258 None:intergenic 45.0%
GCGGAAAGTAAATTGCTCGA+AGG + Chr8:2051739-2051758 None:intergenic 45.0%
GGTGATGAGATGCGATCAAA+GGG + Chr8:2051602-2051621 None:intergenic 45.0%
TACCAAGCAGAGGAATGGAA+GGG - Chr8:2054862-2054881 MsG0880041978.01.T01:CDS 45.0%
TATACCAACACCATGCACCA+TGG + Chr8:2050257-2050276 None:intergenic 45.0%
TCAACACAACGTGTCTTTCC+CGG + Chr8:2050161-2050180 None:intergenic 45.0%
TTACCAAGCAGAGGAATGGA+AGG - Chr8:2054861-2054880 MsG0880041978.01.T01:CDS 45.0%
TTCTCTTCCTCCAAAGGAGA+AGG - Chr8:2050416-2050435 MsG0880041978.01.T01:CDS 45.0%
! ACCCAAAAGTGTGCTGAAAG+GGG + Chr8:2051364-2051383 None:intergenic 45.0%
! ACCCCTTTCAGCACACTTTT+GGG - Chr8:2051360-2051379 MsG0880041978.01.T01:intron 45.0%
! CAACCCAAAAGTGTGCTGAA+AGG + Chr8:2051366-2051385 None:intergenic 45.0%
! CCACGACATGTTTTCAGTCA+TGG - Chr8:2053765-2053784 MsG0880041978.01.T01:intron 45.0%
! TACCCCTTTCAGCACACTTT+TGG - Chr8:2051359-2051378 MsG0880041978.01.T01:intron 45.0%
! TCATTGATGGTTACATGCGC+AGG - Chr8:2054760-2054779 MsG0880041978.01.T01:CDS 45.0%
!! AAGCACTTTGTGCTGGTTCA+TGG - Chr8:2050225-2050244 MsG0880041978.01.T01:CDS 45.0%
!! CTTTCAGCACACTTTTGGGT+TGG - Chr8:2051364-2051383 MsG0880041978.01.T01:intron 45.0%
!! TGGTGCATGGTGTTGGTATA+AGG - Chr8:2050257-2050276 MsG0880041978.01.T01:CDS 45.0%
!!! CTTGTGGGTCATAGTTTTGG+AGG - Chr8:2050444-2050463 MsG0880041978.01.T01:intron 45.0%
!! AAAAAAATAATGTTAAAAAT+TGG - Chr8:2052444-2052463 MsG0880041978.01.T01:intron 5.0%
!! AAATATGTATAATATAATAT+AGG + Chr8:2054718-2054737 None:intergenic 5.0%
!! AATATGTATAATATAATATA+GGG + Chr8:2054717-2054736 None:intergenic 5.0%
!! ATTAAAAATATTAATAAGTA+GGG - Chr8:2052557-2052576 MsG0880041978.01.T01:intron 5.0%
!! TATTAAAAATATTAATAAGT+AGG - Chr8:2052556-2052575 MsG0880041978.01.T01:intron 5.0%
!! TTTATATCAATAAAATAATA+TGG + Chr8:2053145-2053164 None:intergenic 5.0%
!!! AATATGAATTTTTTTTATAA+AGG + Chr8:2050826-2050845 None:intergenic 5.0%
AAGGCAGTTGGAGGACTGTT+TGG + Chr8:2051227-2051246 None:intergenic 50.0%
AGGGTTACCAAGCAGAGGAA+TGG - Chr8:2054857-2054876 MsG0880041978.01.T01:CDS 50.0%
AGTAGAAAGAGCGGACAGAC+GGG - Chr8:2054098-2054117 MsG0880041978.01.T01:intron 50.0%
CACTTGGGTCATCATTGGTG+AGG - Chr8:2054789-2054808 MsG0880041978.01.T01:CDS 50.0%
CAGTAGAAAGAGCGGACAGA+CGG - Chr8:2054097-2054116 MsG0880041978.01.T01:intron 50.0%
CATGCGCAGGATTTGACACT+TGG - Chr8:2054773-2054792 MsG0880041978.01.T01:CDS 50.0%
CCAAACAACAAGGCAGTTGG+AGG + Chr8:2051236-2051255 None:intergenic 50.0%
TACCCTTCCATTCCTCTGCT+TGG + Chr8:2054867-2054886 None:intergenic 50.0%
!! CCTCCAACTGCCTTGTTGTT+TGG - Chr8:2051233-2051252 MsG0880041978.01.T01:intron 50.0%
!! TTTGTGCTGGTTCATGGAGC+TGG - Chr8:2050231-2050250 MsG0880041978.01.T01:CDS 50.0%
!! CTGTGGTGGATCCTGTTGAC+TGG + Chr8:2051186-2051205 None:intergenic 55.0%
ATGGAGCTGGCCATGGTGCA+TGG - Chr8:2050244-2050263 MsG0880041978.01.T01:CDS 60.0%
CTGATGCAGAGGGCAGAGAG+AGG + Chr8:2052629-2052648 None:intergenic 60.0%
CTGGCCATGGTGCATGGTGT+TGG - Chr8:2050250-2050269 MsG0880041978.01.T01:CDS 60.0%
CTGGTTCATGGAGCTGGCCA+TGG - Chr8:2050237-2050256 MsG0880041978.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 2050150 2055069 2050150 ID=MsG0880041978.01;Name=MsG0880041978.01
Chr8 mRNA 2050150 2055069 2050150 ID=MsG0880041978.01.T01;Parent=MsG0880041978.01;Name=MsG0880041978.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|284
Chr8 exon 2054641 2055069 2054641 ID=MsG0880041978.01.T01:exon:1268;Parent=MsG0880041978.01.T01
Chr8 exon 2053918 2054055 2053918 ID=MsG0880041978.01.T01:exon:1267;Parent=MsG0880041978.01.T01
Chr8 exon 2050150 2050437 2050150 ID=MsG0880041978.01.T01:exon:1266;Parent=MsG0880041978.01.T01
Chr8 CDS 2054641 2055069 2054641 ID=MsG0880041978.01.T01:cds;Parent=MsG0880041978.01.T01
Chr8 CDS 2053918 2054055 2053918 ID=MsG0880041978.01.T01:cds;Parent=MsG0880041978.01.T01
Chr8 CDS 2050150 2050437 2050150 ID=MsG0880041978.01.T01:cds;Parent=MsG0880041978.01.T01
Gene Sequence

>MsG0880041978.01.T01

ATGATCAACCGGGAAAGACACGTTGTGTTGATTCTTCTCTTCTTTATTCTTTCATTTTTCATTGGTGCTAATGGAAAGCACTTTGTGCTGGTTCATGGAGCTGGCCATGGTGCATGGTGTTGGTATAAGGTTGCAACTATGCTTAAATCAGCTGGTCATAATGTTAGCACAATTGATTTGGCTGCTTCAGGTATCAATCCAATACAGGTCCAAGAGATTCATTCAAATATTTCAAAATATTATGAACCTTTGATATCATTTATGGATTCTCTTCCTCCAAAGGAGAAGGTGATTCTTGTGGGTCATAGTTTTGGAGGGATACCCTTATCTGTTGCTATGGAAAAGTTCCCTAAGAAAATTTCTCTTGCAGTTTTTGTCACTGCATTCGTGATTAGTGAAAACCTTAATTTCACAAGTTTACTTCAAGAGAATCAGAGAAGATTAAATTCCAGTCAACAGGATCCACCACAGTTATTCTTCGTTGATGGACCAAACAGTCCTCCAACTGCCTTGTTGTTTGGATCCAAACTCTTGGCATCTAATCTGTATCAATTATCGCCTAATGAGGATTTGACACTTGGGTCATCATTGGTGAGGCCACATCCTATCTTTAATGATGAAAAACTGGTGTTGAAAGAAACAAGGGTTACCAAGCAGAGGAATGGAAGGGTACCAAAAGTCTTCATTATTTCCAAAGGAGACATTTTCATTAGAGAGGATCTGCAATTATGGATAATTGAGAGAACGGGTCCATATGTTGAAGTGAAAGTGATAAAGGATTCAGATCACATGGTCATGTTCTCCAAACCTAAAAAGCTTACCTCTTACATTCTAAAGACTGCTCACAAATATTAG

Protein sequence

>MsG0880041978.01.T01

MINRERHVVLILLFFILSFFIGANGKHFVLVHGAGHGAWCWYKVATMLKSAGHNVSTIDLAASGINPIQVQEIHSNISKYYEPLISFMDSLPPKEKVILVGHSFGGIPLSVAMEKFPKKISLAVFVTAFVISENLNFTSLLQENQRRLNSSQQDPPQLFFVDGPNSPPTALLFGSKLLASNLYQLSPNEDLTLGSSLVRPHPIFNDEKLVLKETRVTKQRNGRVPKVFIISKGDIFIREDLQLWIIERTGPYVEVKVIKDSDHMVMFSKPKKLTSYILKTAHKY*