AlfalfaGEDB | MsG0680030696.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030696.01

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030696.01.T01	XP_003618439.2	94.624	465	25	0	1	465	47	511	0	838

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030696.01.T01	Q9FLD5	64.423	416	138	5	1	409	48	460	0	546

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030696.01.T01	G7KK18	94.624	465	25	0	1	465	47	511	0.0	838

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0680030696.01	MsG0780038113.01	0.800916	1.151276e-48	5.426318e-46
MsG0480023903.01	MsG0680030696.01	0.800265	1.563133e-48	7.246548e-46
MsG0380015877.01	MsG0680030696.01	0.821418	4.080394e-53	3.317853e-50
MsG0380015878.01	MsG0680030696.01	0.813178	2.918985e-51	1.892654e-48
MsG0680030694.01	MsG0680030696.01	0.851367	9.292472e-61	1.876813e-57
MsG0680030695.01	MsG0680030696.01	0.854037	1.607160e-61	3.542865e-58

PPI

Gene1	Gene2	Type
MsG0680030696.01	MsG0680035211.01	PPI
MsG0280008087.01	MsG0680030696.01	PPI
MsG0680035214.01	MsG0680030696.01	PPI
MsG0680035220.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034459.01	PPI
MsG0680033272.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035024.01	PPI
MsG0680035255.01	MsG0680030696.01	PPI
MsG0680035211.01	MsG0680030696.01	PPI
MsG0680035264.01	MsG0680030696.01	PPI
MsG0680035211.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033197.01	PPI
MsG0580028388.01	MsG0680030696.01	PPI
MsG0680033701.01	MsG0680030696.01	PPI
MsG0680033724.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033739.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0680032793.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0580025539.01	PPI
MsG0680033779.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035211.01	PPI
MsG0680030696.01	MsG0680035024.01	PPI
MsG0680030696.01	MsG0680035249.01	PPI
MsG0680030696.01	MsG0180002432.01	PPI
MsG0580028389.01	MsG0680030696.01	PPI
MsG0680034985.01	MsG0680030696.01	PPI
MsG0680033647.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033780.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033723.01	PPI
MsG0680030696.01	MsG0580029982.01	PPI
MsG0680035058.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0580028388.01	PPI
MsG0680030696.01	MsG0680035211.01	PPI
MsG0680030696.01	MsG0680035253.01	PPI
MsG0680034466.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0180002222.01	PPI
MsG0680035024.01	MsG0680030696.01	PPI
MsG0680033732.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035052.01	PPI
MsG0680035213.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033673.01	PPI
MsG0680030696.01	MsG0280008708.01	PPI
MsG0680030696.01	MsG0680035248.01	PPI
MsG0680030696.01	MsG0680033762.01	PPI
MsG0680035028.01	MsG0680030696.01	PPI
MsG0680033774.01	MsG0680030696.01	PPI
MsG0680035246.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035057.01	PPI
MsG0680030696.01	MsG0680032951.01	PPI
MsG0680034466.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0580028388.01	PPI
MsG0680030696.01	MsG0680033171.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0680035245.01	MsG0680030696.01	PPI
MsG0580027141.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035216.01	PPI
MsG0480024013.01	MsG0680030696.01	PPI
MsG0680035250.01	MsG0680030696.01	PPI
MsG0680034466.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035252.01	PPI
MsG0280008086.01	MsG0680030696.01	PPI
MsG0180001047.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680032793.01	PPI
MsG0680030696.01	MsG0680035265.01	PPI
MsG0680030696.01	MsG0580028388.01	PPI
MsG0680032800.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0580027119.01	PPI
MsG0680030696.01	MsG0680034466.01	PPI
MsG0680030696.01	MsG0680032796.01	PPI
MsG0680030696.01	MsG0680033276.01	PPI
MsG0680030696.01	MsG0580027118.01	PPI
MsG0680030696.01	MsG0580027140.01	PPI
MsG0680033271.01	MsG0680030696.01	PPI
MsG0680033483.01	MsG0680030696.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680032793.01	PPI
MsG0680033443.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035263.01	PPI
MsG0180001046.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033483.01	PPI
MsG0280008708.01	MsG0680030696.01	PPI
MsG0680033665.01	MsG0680030696.01	PPI
MsG0680033259.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033775.01	PPI
MsG0680035211.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034466.01	PPI
MsG0580028388.01	MsG0680030696.01	PPI
MsG0680033777.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033708.01	PPI
MsG0680030696.01	MsG0680035230.01	PPI
MsG0680030696.01	MsG0680034621.01	PPI
MsG0680030696.01	MsG0680033076.01	PPI
MsG0580028388.01	MsG0680030696.01	PPI
MsG0680035053.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033773.01	PPI
MsG0680035266.01	MsG0680030696.01	PPI
MsG0680035034.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035084.01	PPI
MsG0680030696.01	MsG0680034444.01	PPI
MsG0680030696.01	MsG0580025538.01	PPI
MsG0680030696.01	MsG0680033170.01	PPI
MsG0680030696.01	MsG0680033671.01	PPI
MsG0680035222.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0380014599.01	PPI
MsG0380015692.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033076.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034465.01	PPI
MsG0680030696.01	MsG0680033759.01	PPI
MsG0680033259.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034467.01	PPI
MsG0680030696.01	MsG0580025541.01	PPI
MsG0680030696.01	MsG0580025540.01	PPI
MsG0680033776.01	MsG0680030696.01	PPI
MsG0680033718.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035211.01	PPI
MsG0780040661.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033270.01	PPI
MsG0680033076.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035229.01	PPI
MsG0680034389.01	MsG0680030696.01	PPI
MsG0680035024.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0180003735.01	PPI
MsG0680030696.01	MsG0680033259.01	PPI
MsG0680030696.01	MsG0680033442.01	PPI
MsG0680030696.01	MsG0680034466.01	PPI
MsG0680034986.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035262.01	PPI
MsG0680030696.01	MsG0680034468.01	PPI
MsG0680030696.01	MsG0680033667.01	PPI
MsG0680030696.01	MsG0680033726.01	PPI
MsG0680034466.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034444.01	PPI
MsG0680034461.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033297.01	PPI
MsG0680030696.01	MsG0680035025.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034466.01	PPI
MsG0680030696.01	MsG0680035260.01	PPI
MsG0680030696.01	MsG0580027121.01	PPI
MsG0680035223.01	MsG0680030696.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0680034464.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034444.01	PPI
MsG0580025542.01	MsG0680030696.01	PPI
MsG0680033076.01	MsG0680030696.01	PPI
MsG0680035225.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034466.01	PPI
MsG0680032799.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035251.01	PPI
MsG0680030696.01	MsG0680034891.01	PPI
MsG0680035267.01	MsG0680030696.01	PPI
MsG0680034469.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034460.01	PPI
MsG0680030696.01	MsG0680034464.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680034444.01	PPI
MsG0680034444.01	MsG0680030696.01	PPI
MsG0280008091.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680035268.01	PPI
MsG0680035031.01	MsG0680030696.01	PPI
MsG0680034931.01	MsG0680030696.01	PPI
MsG0680033719.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033731.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI
MsG0680030696.01	MsG0680033259.01	PPI
MsG0680030696.01	MsG0580027122.01	PPI
MsG0680030696.01	MsG0680033280.01	PPI
MsG0680030696.01	MsG0680035086.01	PPI
MsG0180001883.01	MsG0680030696.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030696.01.T01	MTR_6g009540	94.624	465	25	0	1	465	47	511	0.0	838
MsG0680030696.01.T01	MTR_6g009520	87.957	465	56	0	1	465	49	513	0.0	778
MsG0680030696.01.T01	MTR_6g009553	75.599	459	91	3	1	444	25	477	0.0	669
MsG0680030696.01.T01	MTR_6g009720	75.109	458	94	4	1	445	49	499	0.0	657
MsG0680030696.01.T01	MTR_6g009770	74.505	455	97	4	5	446	30	478	0.0	652
MsG0680030696.01.T01	MTR_6g042290	67.735	468	123	5	1	467	58	498	0.0	611
MsG0680030696.01.T01	MTR_7g008040	69.928	419	117	4	1	413	45	460	0.0	607
MsG0680030696.01.T01	MTR_6g009660	67.091	471	104	7	1	462	31	459	0.0	577
MsG0680030696.01.T01	MTR_6g009510	68.240	466	72	6	3	467	60	450	0.0	572
MsG0680030696.01.T01	MTR_4g107370	59.091	462	171	8	1	447	50	508	0.0	553
MsG0680030696.01.T01	MTR_1g022250	59.677	434	158	5	1	431	47	466	0.0	533
MsG0680030696.01.T01	MTR_2g030420	59.016	427	158	5	1	423	50	463	0.0	516
MsG0680030696.01.T01	MTR_1g022245	56.295	421	168	5	2	412	46	460	4.17e-169	485
MsG0680030696.01.T01	MTR_4g128260	45.000	400	206	5	2	393	48	441	1.68e-115	349
MsG0680030696.01.T01	MTR_5g020980	39.602	452	231	8	3	442	56	477	3.94e-111	337
MsG0680030696.01.T01	MTR_2g076970	42.727	440	205	10	20	453	61	459	7.13e-110	333
MsG0680030696.01.T01	MTR_2g076710	43.447	412	199	10	17	422	63	446	1.60e-109	332
MsG0680030696.01.T01	MTR_8g076920	42.381	420	211	7	17	431	78	471	1.47e-106	326
MsG0680030696.01.T01	MTR_2g076920	40.733	464	225	12	6	464	48	466	2.32e-106	324
MsG0680030696.01.T01	MTR_2g076690	42.757	428	204	12	6	426	54	447	3.02e-105	321
MsG0680030696.01.T01	MTR_2g061820	44.947	376	190	8	23	393	63	426	5.02e-105	322
MsG0680030696.01.T01	MTR_2g076990	41.882	425	207	9	20	436	4	396	4.12e-104	317
MsG0680030696.01.T01	MTR_2g076900	40.868	438	226	8	6	437	47	457	3.91e-103	315
MsG0680030696.01.T01	MTR_2g076840	41.920	427	208	8	6	426	47	439	5.27e-102	321
MsG0680030696.01.T01	MTR_2g076840	48.592	284	114	5	132	413	450	703	2.63e-83	271
MsG0680030696.01.T01	MTR_5g020990	40.749	427	216	9	9	423	79	480	5.39e-98	303
MsG0680030696.01.T01	MTR_3g103150	45.364	302	136	4	114	414	4	277	4.09e-85	263
MsG0680030696.01.T01	MTR_7g117950	34.293	382	195	8	15	393	59	387	1.03e-67	224
MsG0680030696.01.T01	MTR_3g092060	32.292	384	208	8	15	393	60	396	2.26e-64	216
MsG0680030696.01.T01	MTR_5g021020	38.994	318	147	7	98	414	135	406	1.93e-59	201
MsG0680030696.01.T01	MTR_8g027200	30.400	375	188	9	23	393	65	370	2.65e-50	177
MsG0680030696.01.T01	MTR_1g011680	61.481	135	47	3	280	412	2	133	2.66e-43	151
MsG0680030696.01.T01	MTR_5g021000	45.255	137	67	3	307	438	1	134	2.98e-31	118
MsG0680030696.01.T01	MTR_5g020720	40.331	181	88	5	220	399	25	186	3.97e-27	108
MsG0680030696.01.T01	MTR_1g113750	50.926	108	51	2	340	446	16	122	8.70e-23	94.0
MsG0680030696.01.T01	MTR_5g021010	48.352	91	43	2	324	413	34	121	3.85e-17	77.8
MsG0680030696.01.T01	MTR_1g083330	31.606	193	99	6	170	353	177	345	5.93e-14	73.9
MsG0680030696.01.T01	MTR_4g033235	31.606	193	99	6	170	353	178	346	6.58e-14	73.9
MsG0680030696.01.T01	MTR_2g076820	47.143	70	33	2	340	409	1	66	1.40e-11	60.5
MsG0680030696.01.T01	MTR_6g059690	27.393	303	168	14	140	417	177	452	2.14e-11	66.6
MsG0680030696.01.T01	MTR_8g099605	29.050	179	104	6	176	346	419	582	6.12e-11	65.5
MsG0680030696.01.T01	MTR_8g099605	29.050	179	104	6	176	346	178	341	8.41e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030696.01.T01	AT5G40010	64.423	416	138	5	1	409	48	460	0.0	546
MsG0680030696.01.T01	AT3G28580	63.285	414	142	6	1	409	47	455	0.0	524
MsG0680030696.01.T01	AT3G28510	62.169	415	155	2	4	418	51	463	5.10e-176	504
MsG0680030696.01.T01	AT3G28580	59.611	411	140	5	1	409	47	433	1.94e-166	478
MsG0680030696.01.T01	AT3G28540	60.194	412	151	6	5	411	52	455	1.49e-163	472
MsG0680030696.01.T01	AT3G28540	60.194	412	151	6	5	411	52	455	2.28e-163	471
MsG0680030696.01.T01	AT3G28610	53.919	421	159	7	3	417	59	450	1.10e-159	461
MsG0680030696.01.T01	AT3G28600	54.699	415	164	6	3	417	60	450	9.94e-158	456
MsG0680030696.01.T01	AT5G40000	52.347	426	174	7	3	426	64	462	6.05e-152	441
MsG0680030696.01.T01	AT3G28520	55.234	449	183	7	4	445	41	478	2.61e-148	432
MsG0680030696.01.T01	AT3G28570	49.309	434	175	8	3	433	58	449	1.09e-140	411
MsG0680030696.01.T01	AT3G28570	49.309	434	175	8	3	433	65	456	2.56e-140	410
MsG0680030696.01.T01	AT3G28600	50.602	415	142	6	3	417	60	411	2.42e-137	402
MsG0680030696.01.T01	AT5G57480	40.086	464	254	8	2	455	48	497	3.83e-114	346
MsG0680030696.01.T01	AT4G25835	42.243	419	231	6	15	429	57	468	4.30e-112	340
MsG0680030696.01.T01	AT3G50940	42.476	412	202	8	17	423	70	451	1.60e-111	337
MsG0680030696.01.T01	AT3G50930	41.228	456	242	10	6	456	105	539	1.99e-110	338
MsG0680030696.01.T01	AT4G30250	42.718	412	216	7	15	414	57	460	8.48e-105	322
MsG0680030696.01.T01	AT4G30250	42.718	412	216	7	15	414	59	462	8.70e-105	322
MsG0680030696.01.T01	AT5G17760	39.238	446	217	9	19	439	71	487	4.82e-101	311
MsG0680030696.01.T01	AT2G18193	39.041	438	228	9	4	433	58	464	8.68e-98	303
MsG0680030696.01.T01	AT4G05380	40.855	421	219	9	11	427	66	460	1.48e-97	301
MsG0680030696.01.T01	AT5G17740	39.909	441	227	11	23	449	75	491	4.01e-97	302
MsG0680030696.01.T01	AT5G17730	37.443	438	223	12	15	434	64	468	3.92e-94	293
MsG0680030696.01.T01	AT1G43910	42.703	370	190	6	55	424	111	458	3.34e-91	285
MsG0680030696.01.T01	AT2G18190	38.958	403	217	8	17	416	70	446	8.18e-91	285
MsG0680030696.01.T01	AT5G17750	38.122	362	188	7	27	378	55	390	5.28e-85	266
MsG0680030696.01.T01	AT2G46620	31.860	430	241	8	15	439	58	440	4.98e-71	233
MsG0680030696.01.T01	AT5G17760	36.502	263	141	4	19	266	71	322	1.37e-51	178
MsG0680030696.01.T01	AT3G29800	30.179	391	207	11	55	440	71	400	9.94e-47	167
MsG0680030696.01.T01	AT3G28560	44.571	175	82	4	5	171	45	212	6.25e-41	147
MsG0680030696.01.T01	AT4G05340	51.042	96	41	1	269	364	4	93	8.92e-24	95.5
MsG0680030696.01.T01	AT1G09100	32.124	193	98	6	170	353	177	345	9.33e-15	76.6
MsG0680030696.01.T01	AT3G05530	31.606	193	99	6	170	353	178	346	3.55e-14	74.7
MsG0680030696.01.T01	AT3G02450	24.561	342	195	15	143	464	308	606	1.86e-11	66.6
MsG0680030696.01.T01	AT2G20140	31.138	167	84	6	187	345	212	355	3.13e-11	65.5

Find 62 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGGTTATCTACTTTA+TGG	0.116491	6:+7301304	MsG0680030696.01.T01:CDS
GAAAGTAAGGTAACTCTTTC+GGG	0.182477	6:+7301598	MsG0680030696.01.T01:CDS
ATTTCTCATAGAAGGTTATT+TGG	0.200148	6:-7300730	None:intergenic
CTCTTACATCCAACATGTTT+TGG	0.206662	6:+7301051	MsG0680030696.01.T01:CDS
TGCTTAGAACAAGTGGATTT+TGG	0.216984	6:-7300862	None:intergenic
CCAACAATCCAAGTAATAAT+TGG	0.250050	6:+7301122	MsG0680030696.01.T01:CDS
TGAAAGTAAGGTAACTCTTT+CGG	0.282567	6:+7301597	MsG0680030696.01.T01:CDS
ATCTCCTGATTTCTCATAGA+AGG	0.330595	6:-7300738	None:intergenic
CCAATTATTACTTGGATTGT+TGG	0.332851	6:-7301122	None:intergenic
TCTTGAGGAAGCAAAGAAAA+AGG	0.342972	6:+7301948	MsG0680030696.01.T01:CDS
TAGAAGGTTATTTGGATGTA+AGG	0.371337	6:-7300722	None:intergenic
TTGTAGCTATCAAGCTTTCA+AGG	0.373428	6:+7301759	MsG0680030696.01.T01:CDS
CGGGCAAAGGAAGAAGAAAA+AGG	0.374019	6:+7301507	MsG0680030696.01.T01:CDS
TCTTGAATTAACAATTGTTA+AGG	0.391990	6:+7301396	MsG0680030696.01.T01:CDS
TGAACTCATCTGTGATCTCT+TGG	0.398036	6:-7300895	None:intergenic
TACCTAATCCAATTATTACT+TGG	0.404648	6:-7301130	None:intergenic
AGTTAGCACTAAGATATGTT+TGG	0.410357	6:-7300793	None:intergenic
CCAGTTATTGAAAAGTTGTT+GGG	0.411423	6:+7301829	MsG0680030696.01.T01:CDS
ATAACCTTCTATGAGAAATC+AGG	0.414579	6:+7300734	MsG0680030696.01.T01:CDS
AAATCTTCAGTGATTGACTT+TGG	0.418717	6:-7301895	None:intergenic
AAAGAGTATTATGCTAAAGT+TGG	0.419632	6:+7301271	MsG0680030696.01.T01:CDS
TCCAGTTATTGAAAAGTTGT+TGG	0.424243	6:+7301828	MsG0680030696.01.T01:CDS
AGTTCAATGGTGTCAAAGTT+TGG	0.425897	6:+7300912	MsG0680030696.01.T01:CDS
GCAAGTGTTTCAAAACTTGC+AGG	0.428195	6:-7301190	None:intergenic
AGGCTATAACAATGAAGAAT+AGG	0.432830	6:+7301083	MsG0680030696.01.T01:CDS
ATCCAAGTAATAATTGGATT+AGG	0.448544	6:+7301128	MsG0680030696.01.T01:CDS
GATCTTATAAAATTCAAGAA+AGG	0.463577	6:+7301247	MsG0680030696.01.T01:CDS
CTTTATGGACCTCCAGGAAC+CGG	0.469613	6:+7301319	MsG0680030696.01.T01:CDS
ATGCTAAAGTTGGAAAGGCT+TGG	0.473908	6:+7301281	MsG0680030696.01.T01:CDS
AACTTGATCCTGCTCTCATA+AGG	0.478108	6:+7301701	MsG0680030696.01.T01:CDS
ATTAACTCAAGAGGAAGAAA+AGG	0.484336	6:+7302041	MsG0680030696.01.T01:CDS
AAATTCTCAGCAACATCTGC+TGG	0.493448	6:-7301868	None:intergenic
ATCTTATAAAATTCAAGAAA+GGG	0.494988	6:+7301248	MsG0680030696.01.T01:CDS
TCATCCATGCTTAGAACAAG+TGG	0.497876	6:-7300869	None:intergenic
CTCTCGATCTCACCGGGCAA+AGG	0.502496	6:+7301494	MsG0680030696.01.T01:CDS
CAAAACATGTTGGATGTAAG+AGG	0.509559	6:-7301050	None:intergenic
TTCCTTGTTCCAAAACATGT+TGG	0.518629	6:-7301060	None:intergenic
GATTGTTCTCTCGATCTCAC+CGG	0.518830	6:+7301487	MsG0680030696.01.T01:CDS
CGTCCCCTCCTTATGAGAGC+AGG	0.522167	6:-7301709	None:intergenic
TATCTACTTTATGGACCTCC+AGG	0.534952	6:+7301313	MsG0680030696.01.T01:CDS
GAAACAAGAATTAACTCAAG+AGG	0.536216	6:+7302032	MsG0680030696.01.T01:CDS
ATTGTTCTCTCGATCTCACC+GGG	0.546404	6:+7301488	MsG0680030696.01.T01:CDS
AGAAGGTTATTTGGATGTAA+GGG	0.546485	6:-7300721	None:intergenic
TGAAAATGATTGTGTTCTTG+AGG	0.555571	6:-7300954	None:intergenic
AGCACTAAGATATGTTTGGA+TGG	0.566183	6:-7300789	None:intergenic
TGATGAGAATGATGAAAAGA+AGG	0.571153	6:+7301540	MsG0680030696.01.T01:CDS
GTATTATGCTAAAGTTGGAA+AGG	0.575311	6:+7301276	MsG0680030696.01.T01:CDS
AAATCCACTTGTTCTAAGCA+TGG	0.575420	6:+7300865	MsG0680030696.01.T01:CDS
GAGATCACAGATGAGTTCAA+TGG	0.581658	6:+7300899	MsG0680030696.01.T01:CDS
GAATTTGATTCAATCTCTTG+AGG	0.581998	6:+7301933	MsG0680030696.01.T01:CDS
TTGATCCTGCTCTCATAAGG+AGG	0.589263	6:+7301704	MsG0680030696.01.T01:CDS
GTTGGAAAGGCTTGGAAACG+TGG	0.601459	6:+7301289	MsG0680030696.01.T01:CDS
TGATCCTGCTCTCATAAGGA+GGG	0.603026	6:+7301705	MsG0680030696.01.T01:CDS
AGATGAGCAAGCTCAGCTCA+AGG	0.617202	6:+7301999	MsG0680030696.01.T01:CDS
TCTCATAAGGAGGGGACGAA+TGG	0.618415	6:+7301714	MsG0680030696.01.T01:CDS
TCAATGGTGTCAAAGTTTGG+TGG	0.621281	6:+7300915	MsG0680030696.01.T01:CDS
GATGGAATTTGGTCAGCATG+TGG	0.626671	6:+7301637	MsG0680030696.01.T01:CDS
GTTCATGAAATTCGCAATAG+CGG	0.630066	6:-7301359	None:intergenic
TCAAGAGGAAGAAAAGGTCA+AGG	0.639701	6:+7302047	MsG0680030696.01.T01:CDS
GATCCTGCTCTCATAAGGAG+GGG	0.639749	6:+7301706	MsG0680030696.01.T01:CDS
TTAGGTATAGAAGCACAAAG+TGG	0.711428	6:+7301146	MsG0680030696.01.T01:CDS
GGTCAGCATGTGGATCAGAG+AGG	0.739195	6:+7301647	MsG0680030696.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATCTTATAAAATTCAAGAAA+GGG	+	Chr6:7301248-7301267	MsG0680030696.01.T01:CDS	15.0%
!!!	TGAATTTTATAAGATCATTT+AGG	-	Chr6:7301243-7301262	None:intergenic	15.0%
!!	AGAAGAAAAAAATGAAAGTA+AGG	+	Chr6:7301585-7301604	MsG0680030696.01.T01:CDS	20.0%
!!	GATCTTATAAAATTCAAGAA+AGG	+	Chr6:7301247-7301266	MsG0680030696.01.T01:CDS	20.0%
!!	TCTTGAATTAACAATTGTTA+AGG	+	Chr6:7301396-7301415	MsG0680030696.01.T01:CDS	20.0%
!!!	AATTTTCACAACTAATTTTG+TGG	+	Chr6:7301675-7301694	MsG0680030696.01.T01:CDS	20.0%
!!!	TGAATTTTATTGATGGAATT+TGG	+	Chr6:7301626-7301645	MsG0680030696.01.T01:CDS	20.0%
!	AAAATTAGAGGAAAAAGTGA+AGG	+	Chr6:7302077-7302096	MsG0680030696.01.T01:CDS	25.0%
!	ATCCAAGTAATAATTGGATT+AGG	+	Chr6:7301128-7301147	MsG0680030696.01.T01:CDS	25.0%
!	ATTTCTCATAGAAGGTTATT+TGG	-	Chr6:7300733-7300752	None:intergenic	25.0%
!	TACCTAATCCAATTATTACT+TGG	-	Chr6:7301133-7301152	None:intergenic	25.0%
!!!	AAAGAGTATTATGCTAAAGT+TGG	+	Chr6:7301271-7301290	MsG0680030696.01.T01:CDS	25.0%
!!!	GGTTTGTTGAATTTTATTGA+TGG	+	Chr6:7301619-7301638	MsG0680030696.01.T01:CDS	25.0%
!!!	TCTTTTTCAGCTTTCTTAAT+AGG	-	Chr6:7301568-7301587	None:intergenic	25.0%
	AAACGTGGTTATCTACTTTA+TGG	+	Chr6:7301304-7301323	MsG0680030696.01.T01:CDS	30.0%
	AGAAGGTTATTTGGATGTAA+GGG	-	Chr6:7300724-7300743	None:intergenic	30.0%
	AGGCTATAACAATGAAGAAT+AGG	+	Chr6:7301083-7301102	MsG0680030696.01.T01:CDS	30.0%
	AGTTAGCACTAAGATATGTT+TGG	-	Chr6:7300796-7300815	None:intergenic	30.0%
	ATAACCTTCTATGAGAAATC+AGG	+	Chr6:7300734-7300753	MsG0680030696.01.T01:CDS	30.0%
	ATTAACTCAAGAGGAAGAAA+AGG	+	Chr6:7302041-7302060	MsG0680030696.01.T01:CDS	30.0%
	CCAACAATCCAAGTAATAAT+TGG	+	Chr6:7301122-7301141	MsG0680030696.01.T01:CDS	30.0%
	CCAATTATTACTTGGATTGT+TGG	-	Chr6:7301125-7301144	None:intergenic	30.0%
	CCAGTTATTGAAAAGTTGTT+GGG	+	Chr6:7301829-7301848	MsG0680030696.01.T01:CDS	30.0%
	GAAACAAGAATTAACTCAAG+AGG	+	Chr6:7302032-7302051	MsG0680030696.01.T01:CDS	30.0%
	GAATTTGATTCAATCTCTTG+AGG	+	Chr6:7301933-7301952	MsG0680030696.01.T01:CDS	30.0%
	GTATTATGCTAAAGTTGGAA+AGG	+	Chr6:7301276-7301295	MsG0680030696.01.T01:CDS	30.0%
	TAGAAGGTTATTTGGATGTA+AGG	-	Chr6:7300725-7300744	None:intergenic	30.0%
	TCCAGTTATTGAAAAGTTGT+TGG	+	Chr6:7301828-7301847	MsG0680030696.01.T01:CDS	30.0%
	TGAAAATGATTGTGTTCTTG+AGG	-	Chr6:7300957-7300976	None:intergenic	30.0%
	TGAAAGTAAGGTAACTCTTT+CGG	+	Chr6:7301597-7301616	MsG0680030696.01.T01:CDS	30.0%
	TGATGAGAATGATGAAAAGA+AGG	+	Chr6:7301540-7301559	MsG0680030696.01.T01:CDS	30.0%
!	AAATCTTCAGTGATTGACTT+TGG	-	Chr6:7301898-7301917	None:intergenic	30.0%
!	ATGTCTTTTATGGAAGGTTA+GGG	-	Chr6:7301014-7301033	None:intergenic	30.0%
!	GGATATCATAGTAGATTTTC+CGG	-	Chr6:7301341-7301360	None:intergenic	30.0%
!!	CAAGGTTGATGAAAAATTAG+AGG	+	Chr6:7302065-7302084	MsG0680030696.01.T01:CDS	30.0%
!!!	AAGTTTTGAAACACTTGCTT+TGG	+	Chr6:7301195-7301214	MsG0680030696.01.T01:CDS	30.0%
!!!	AGGATCTCTTCTTTCTTTTT+TGG	-	Chr6:7301223-7301242	None:intergenic	30.0%
	AGCACTAAGATATGTTTGGA+TGG	-	Chr6:7300792-7300811	None:intergenic	35.0%
	ATCTCCTGATTTCTCATAGA+AGG	-	Chr6:7300741-7300760	None:intergenic	35.0%
	CAAAACATGTTGGATGTAAG+AGG	-	Chr6:7301053-7301072	None:intergenic	35.0%
	GAAAGTAAGGTAACTCTTTC+GGG	+	Chr6:7301598-7301617	MsG0680030696.01.T01:CDS	35.0%
	GTTCATGAAATTCGCAATAG+CGG	-	Chr6:7301362-7301381	None:intergenic	35.0%
	TCTTGAGGAAGCAAAGAAAA+AGG	+	Chr6:7301948-7301967	MsG0680030696.01.T01:CDS	35.0%
	TTCCTTGTTCCAAAACATGT+TGG	-	Chr6:7301063-7301082	None:intergenic	35.0%
	TTGTAGCTATCAAGCTTTCA+AGG	+	Chr6:7301759-7301778	MsG0680030696.01.T01:CDS	35.0%
!	AAATCCACTTGTTCTAAGCA+TGG	+	Chr6:7300865-7300884	MsG0680030696.01.T01:CDS	35.0%
!	AATCTTTTCTCATCTGACGT+AGG	-	Chr6:7300986-7301005	None:intergenic	35.0%
!	AGTTCAATGGTGTCAAAGTT+TGG	+	Chr6:7300912-7300931	MsG0680030696.01.T01:CDS	35.0%
!	ATCACGATGTCTTTTATGGA+AGG	-	Chr6:7301020-7301039	None:intergenic	35.0%
!	ATCTTTTCTCATCTGACGTA+GGG	-	Chr6:7300985-7301004	None:intergenic	35.0%
!	CCCAACAACTTTTCAATAAC+TGG	-	Chr6:7301832-7301851	None:intergenic	35.0%
!	CTCTTACATCCAACATGTTT+TGG	+	Chr6:7301051-7301070	MsG0680030696.01.T01:CDS	35.0%
!	GATGTCTTTTATGGAAGGTT+AGG	-	Chr6:7301015-7301034	None:intergenic	35.0%
!	TGAGATCACGATGTCTTTTA+TGG	-	Chr6:7301024-7301043	None:intergenic	35.0%
!	TTAGGTATAGAAGCACAAAG+TGG	+	Chr6:7301146-7301165	MsG0680030696.01.T01:CDS	35.0%
!!	TGCTTAGAACAAGTGGATTT+TGG	-	Chr6:7300865-7300884	None:intergenic	35.0%
!!!	ACATGTTTTGGAACAAGGAA+AGG	+	Chr6:7301063-7301082	MsG0680030696.01.T01:CDS	35.0%
!!!	ATCCAACATGTTTTGGAACA+AGG	+	Chr6:7301058-7301077	MsG0680030696.01.T01:CDS	35.0%
	AAATTCTCAGCAACATCTGC+TGG	-	Chr6:7301871-7301890	None:intergenic	40.0%
	AACTTGATCCTGCTCTCATA+AGG	+	Chr6:7301701-7301720	MsG0680030696.01.T01:CDS	40.0%
	AGCAAAGAAAAAGGATGAGG+AGG	+	Chr6:7301957-7301976	MsG0680030696.01.T01:CDS	40.0%
	ATGCTAAAGTTGGAAAGGCT+TGG	+	Chr6:7301281-7301300	MsG0680030696.01.T01:CDS	40.0%
	GAGATCACAGATGAGTTCAA+TGG	+	Chr6:7300899-7300918	MsG0680030696.01.T01:CDS	40.0%
	GAGGAAAAAGTGAAGGAGAA+TGG	+	Chr6:7302084-7302103	MsG0680030696.01.T01:CDS	40.0%
	GCAAGTGTTTCAAAACTTGC+AGG	-	Chr6:7301193-7301212	None:intergenic	40.0%
	GGAAGCAAAGAAAAAGGATG+AGG	+	Chr6:7301954-7301973	MsG0680030696.01.T01:CDS	40.0%
	TATCTACTTTATGGACCTCC+AGG	+	Chr6:7301313-7301332	MsG0680030696.01.T01:CDS	40.0%
	TCAAGAGGAAGAAAAGGTCA+AGG	+	Chr6:7302047-7302066	MsG0680030696.01.T01:CDS	40.0%
	TCATCCATGCTTAGAACAAG+TGG	-	Chr6:7300872-7300891	None:intergenic	40.0%
	TGAACTCATCTGTGATCTCT+TGG	-	Chr6:7300898-7300917	None:intergenic	40.0%
!	ATAGTAGATTTTCCGGTTCC+TGG	-	Chr6:7301334-7301353	None:intergenic	40.0%
!	CTTTTTCTTCTTCCTTTGCC+CGG	-	Chr6:7301509-7301528	None:intergenic	40.0%
!	TCAATGGTGTCAAAGTTTGG+TGG	+	Chr6:7300915-7300934	MsG0680030696.01.T01:CDS	40.0%
	ATTGTTCTCTCGATCTCACC+GGG	+	Chr6:7301488-7301507	MsG0680030696.01.T01:CDS	45.0%
	CGGGCAAAGGAAGAAGAAAA+AGG	+	Chr6:7301507-7301526	MsG0680030696.01.T01:CDS	45.0%
	GATGGAATTTGGTCAGCATG+TGG	+	Chr6:7301637-7301656	MsG0680030696.01.T01:CDS	45.0%
	GATTGTTCTCTCGATCTCAC+CGG	+	Chr6:7301487-7301506	MsG0680030696.01.T01:CDS	45.0%
	TGATCCTGCTCTCATAAGGA+GGG	+	Chr6:7301705-7301724	MsG0680030696.01.T01:CDS	45.0%
	TTGATCCTGCTCTCATAAGG+AGG	+	Chr6:7301704-7301723	MsG0680030696.01.T01:CDS	45.0%
	AGATGAGCAAGCTCAGCTCA+AGG	+	Chr6:7301999-7302018	MsG0680030696.01.T01:CDS	50.0%
	CTTTATGGACCTCCAGGAAC+CGG	+	Chr6:7301319-7301338	MsG0680030696.01.T01:CDS	50.0%
	GATCCTGCTCTCATAAGGAG+GGG	+	Chr6:7301706-7301725	MsG0680030696.01.T01:CDS	50.0%
	GTTGGAAAGGCTTGGAAACG+TGG	+	Chr6:7301289-7301308	MsG0680030696.01.T01:CDS	50.0%
	TCTCATAAGGAGGGGACGAA+TGG	+	Chr6:7301714-7301733	MsG0680030696.01.T01:CDS	50.0%
!	GTAGATTTTCCGGTTCCTGG+AGG	-	Chr6:7301331-7301350	None:intergenic	50.0%
	GGTCAGCATGTGGATCAGAG+AGG	+	Chr6:7301647-7301666	MsG0680030696.01.T01:CDS	55.0%
	CGTCCCCTCCTTATGAGAGC+AGG	-	Chr6:7301712-7301731	None:intergenic	60.0%
	CTCTCGATCTCACCGGGCAA+AGG	+	Chr6:7301494-7301513	MsG0680030696.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	7300716	7302119	7300716	ID=MsG0680030696.01;Name=MsG0680030696.01
Chr6	mRNA	7300716	7302119	7300716	ID=MsG0680030696.01.T01;Parent=MsG0680030696.01;Name=MsG0680030696.01.T01;_AED=0.46;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|467
Chr6	exon	7300716	7302119	7300716	ID=MsG0680030696.01.T01:exon:6704;Parent=MsG0680030696.01.T01
Chr6	CDS	7300716	7302119	7300716	ID=MsG0680030696.01.T01:cds;Parent=MsG0680030696.01.T01

Gene Sequence

>MsG0680030696.01.T01

ATGTACCCTTACATCCAAATAACCTTCTATGAGAAATCAGGAGATCATCTCAAACACAGCAAAACTTACACAACCATCCAAACATATCTTAGTGCTAACTCTTCAAAAAGAGCTAGAAGACTTAAAGCTGAAGTTATCAAAGATCGCCAAAATCCACTTGTTCTAAGCATGGATGACAACCAAGAGATCACAGATGAGTTCAATGGTGTCAAAGTTTGGTGGTCAGCAAATCATATCACCTCAAGAACACAATCATTTTCAATCTACCCTACGTCAGATGAGAAAAGATTCTTAACCCTAACCTTCCATAAAAGACATCGTGATCTCATCACTACCTCTTACATCCAACATGTTTTGGAACAAGGAAAGGCTATAACAATGAAGAATAGGCAGTTAAAGATTTACACCAACAATCCAAGTAATAATTGGATTAGGTATAGAAGCACAAAGTGGAGTCACACAACTTTTGAGCATCCTGCAAGTTTTGAAACACTTGCTTTGGAACCAAAAAAGAAAGAAGAGATCCTAAATGATCTTATAAAATTCAAGAAAGGGAAAGAGTATTATGCTAAAGTTGGAAAGGCTTGGAAACGTGGTTATCTACTTTATGGACCTCCAGGAACCGGAAAATCTACTATGATATCCGCTATTGCGAATTTCATGAACTACGACGTGTATGATCTTGAATTAACAATTGTTAAGGATAACAATGAGCTGAAAAGACTTTTGATCGAGACGTCGAGTAAATCAATTATAGTTATTGAAGATATTGATTGTTCTCTCGATCTCACCGGGCAAAGGAAGAAGAAAAAGGAGAAAGATGATGATGAGAATGATGAAAAGAAGGATCCTATTAAGAAAGCTGAAAAAGAAGAAAAAAATGAAAGTAAGGTAACTCTTTCGGGTTTGTTGAATTTTATTGATGGAATTTGGTCAGCATGTGGATCAGAGAGGATCATAATTTTCACAACTAATTTTGTGGATAAACTTGATCCTGCTCTCATAAGGAGGGGACGAATGGATAAGCACATAGAAATGTCTTATTGTAGCTATCAAGCTTTCAAGGTTCTTGCAAGAAACTACTTAGATGTTGAGTCTCATGATGATTTATTTCCAGTTATTGAAAAGTTGTTGGGAGAGACTAATATGACACCAGCAGATGTTGCTGAGAATTTGATGCCAAAGTCAATCACTGAAGATTTTGAAACTTGCTTGAAGAATTTGATTCAATCTCTTGAGGAAGCAAAGAAAAAGGATGAGGAGGAAGCAAATAAAAAGATAGAAGATGAGCAAGCTCAGCTCAAGGCAGAGAAAGAGAAACAAGAATTAACTCAAGAGGAAGAAAAGGTCAAGGTTGATGAAAAATTAGAGGAAAAAGTGAAGGAGAATGGTGTCATCCATTGA

Protein sequence

>MsG0680030696.01.T01

MYPYIQITFYEKSGDHLKHSKTYTTIQTYLSANSSKRARRLKAEVIKDRQNPLVLSMDDNQEITDEFNGVKVWWSANHITSRTQSFSIYPTSDEKRFLTLTFHKRHRDLITTSYIQHVLEQGKAITMKNRQLKIYTNNPSNNWIRYRSTKWSHTTFEHPASFETLALEPKKKEEILNDLIKFKKGKEYYAKVGKAWKRGYLLYGPPGTGKSTMISAIANFMNYDVYDLELTIVKDNNELKRLLIETSSKSIIVIEDIDCSLDLTGQRKKKKEKDDDENDEKKDPIKKAEKEEKNESKVTLSGLLNFIDGIWSACGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLARNYLDVESHDDLFPVIEKLLGETNMTPADVAENLMPKSITEDFETCLKNLIQSLEEAKKKDEEEANKKIEDEQAQLKAEKEKQELTQEEEKVKVDEKLEEKVKENGVIH*