AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038246.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038246.01.T01 MTR_7g050670 77.895 380 25 3 7 327 93 472 0.0 571
MsG0780038246.01.T01 MTR_7g076570 57.219 374 101 4 7 325 119 488 8.69e-136 395
MsG0780038246.01.T01 MTR_7g076760 54.474 380 112 4 7 325 95 474 8.98e-136 394
MsG0780038246.01.T01 MTR_4g088845 56.267 375 107 3 7 324 93 467 2.14e-134 390
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038246.01.T01 AT1G61330 29.091 220 152 3 7 222 83 302 6.87e-19 87.4
MsG0780038246.01.T01 AT1G61320 24.286 350 201 10 7 292 95 444 7.76e-16 78.6

Find 39 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAAAACTTATTCATTCT+TGG 0.207943 7:-42730631 MsG0780038246.01.T01:CDS
ACTTGTCAAGCTGAGGTTTA+TGG 0.266206 7:+42730816 None:intergenic
TGCAAACCACTTGGAACATT+TGG 0.278568 7:+42734566 None:intergenic
CACTTGGAACATTTGGTAAC+TGG 0.284339 7:+42734573 None:intergenic
TTTGCAAAGAGCAACAATAT+TGG 0.306599 7:-42730708 MsG0780038246.01.T01:CDS
ATTTGACCTTGGAAGGTATT+GGG 0.324651 7:-42730846 MsG0780038246.01.T01:CDS
CCTTGAGCAATTCGAACAAT+TGG 0.372454 7:+42734299 None:intergenic
AGTTATTATGATGACAGTTT+CGG 0.393725 7:-42730572 MsG0780038246.01.T01:CDS
CAGTTACATATTGATCCTGT+TGG 0.396314 7:-42734752 MsG0780038246.01.T01:CDS
GATTGCATGTATTCTCTTGA+TGG 0.417941 7:+42734242 None:intergenic
AATTTGACCTTGGAAGGTAT+TGG 0.422719 7:-42730847 MsG0780038246.01.T01:CDS
GCTGACATGTGCGAAATCTT+TGG 0.433499 7:+42734199 None:intergenic
ACTTTCATATACATATACTT+TGG 0.437058 7:+42730592 None:intergenic
AATCGATTGTTGTGAGGACT+TGG 0.438503 7:-42734378 MsG0780038246.01.T01:CDS
AGCAAAACTTCGATCCCAAC+AGG 0.444056 7:+42734737 None:intergenic
AGTTACATATTGATCCTGTT+GGG 0.448174 7:-42734751 MsG0780038246.01.T01:CDS
ATTACAAATTTGACCTTGGA+AGG 0.453575 7:-42730853 MsG0780038246.01.T01:CDS
CCAATTGTTCGAATTGCTCA+AGG 0.473509 7:-42734299 MsG0780038246.01.T01:CDS
AACTCGCTACATCCATTCTC+TGG 0.503243 7:+42730665 None:intergenic
CTCAATAAGTTGAGGTGTAG+TGG 0.510982 7:+42734169 None:intergenic
CACTACACCTCAACTTATTG+AGG 0.526106 7:-42734168 MsG0780038246.01.T01:intron
TACTCAACTTAAAGTTGCAG+TGG 0.545364 7:-42730780 MsG0780038246.01.T01:CDS
GCAATTCCCAATACCTTCCA+AGG 0.555895 7:+42730840 None:intergenic
CAGGCATTTCTTCAGTGATG+TGG 0.556587 7:+42734513 None:intergenic
GTTGCAAGTATGCACTAAGA+AGG 0.557314 7:-42734705 MsG0780038246.01.T01:CDS
ATCCAACTCATTCAAAACGT+TGG 0.570246 7:-42730547 MsG0780038246.01.T01:CDS
AAGAGCAACAATATTGGAGA+TGG 0.571442 7:-42730702 MsG0780038246.01.T01:CDS
CAATGCTCAATCAACATACC+AGG 0.582449 7:+42734494 None:intergenic
CAATTGTTCGAATTGCTCAA+GGG 0.587482 7:-42734298 MsG0780038246.01.T01:CDS
TGATTGCACTTGTCAAGCTG+AGG 0.589553 7:+42730809 None:intergenic
CACATCACTGAAGAAATGCC+TGG 0.593807 7:-42734512 MsG0780038246.01.T01:CDS
CAGTTACCAAATGTTCCAAG+TGG 0.601094 7:-42734572 MsG0780038246.01.T01:CDS
TTTGAGAATCGATTGTTGTG+AGG 0.603428 7:-42734384 MsG0780038246.01.T01:CDS
ATTCAATTGTGAAACCAGGT+TGG 0.613456 7:+42734654 None:intergenic
ATGCACTAAGAAGGATCTAG+AGG 0.625905 7:-42734696 MsG0780038246.01.T01:CDS
AACATCATAACATTGCGTCT+AGG 0.631139 7:+42730522 None:intergenic
TTCTTGGAAAGCATCAACAA+AGG 0.637076 7:-42730615 MsG0780038246.01.T01:CDS
GTAGATTCAATTGTGAAACC+AGG 0.639369 7:+42734650 None:intergenic
ATATATACCTCAATAAGTTG+AGG 0.643108 7:+42734161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATATAAAAAATAT+AGG - Chr7:42734353-42734372 MsG0780038246.01.T01:CDS 0.0%
!! TTTATTATTATTATTATTAT+TGG - Chr7:42733710-42733729 MsG0780038246.01.T01:intron 0.0%
!! AAGTCAATATTTATTAATAA+TGG - Chr7:42734176-42734195 MsG0780038246.01.T01:CDS 10.0%
!! CAATAAAATTATTGTTAAAT+AGG - Chr7:42734212-42734231 MsG0780038246.01.T01:CDS 10.0%
!! TAATATCATAAATTACTTAA+GGG + Chr7:42734393-42734412 None:intergenic 10.0%
!! TAATTTATGCATATTAATAA+AGG + Chr7:42733748-42733767 None:intergenic 10.0%
!! TTAATATCATAAATTACTTA+AGG + Chr7:42734394-42734413 None:intergenic 10.0%
!!! ATATCTATATACATTTTTTT+TGG - Chr7:42731257-42731276 MsG0780038246.01.T01:intron 10.0%
!!! GTATTATTTTTTTTAAGATT+TGG - Chr7:42734017-42734036 MsG0780038246.01.T01:intron 10.0%
!! ACAATAAATGTATATAGATT+TGG + Chr7:42731284-42731303 None:intergenic 15.0%
!! ACTTTAAATAACATATATCA+TGG + Chr7:42731922-42731941 None:intergenic 15.0%
!!! AAATTTTCCATGATAAAAAA+TGG + Chr7:42730989-42731008 None:intergenic 15.0%
!!! TATTAAACCTTGTAATTTTA+GGG - Chr7:42733766-42733785 MsG0780038246.01.T01:intron 15.0%
!!! TTATTAAACCTTGTAATTTT+AGG - Chr7:42733765-42733784 MsG0780038246.01.T01:intron 15.0%
!! AAAAATTACAAATTTGACCT+TGG - Chr7:42734451-42734470 MsG0780038246.01.T01:CDS 20.0%
!! AATAAACAAAATTCATGGAT+TGG + Chr7:42734059-42734078 None:intergenic 20.0%
!! AATCAACAAGAATTTATCAA+AGG + Chr7:42731886-42731905 None:intergenic 20.0%
!! ACCAAAATAAACAAAATTCA+TGG + Chr7:42734064-42734083 None:intergenic 20.0%
!! ACTTTCATATACATATACTT+TGG + Chr7:42734719-42734738 None:intergenic 20.0%
!! ATCAACAAGAATTTATCAAA+GGG + Chr7:42731885-42731904 None:intergenic 20.0%
!! CAAGTTAAAAACACTAAAAT+TGG - Chr7:42730699-42730718 MsG0780038246.01.T01:CDS 20.0%
!! TCTACCTATGTTTATAATTA+GGG + Chr7:42734286-42734305 None:intergenic 20.0%
!! TTCTACCTATGTTTATAATT+AGG + Chr7:42734287-42734306 None:intergenic 20.0%
!!! AACATTGTTTTGTAAATTTG+AGG - Chr7:42733830-42733849 MsG0780038246.01.T01:intron 20.0%
!!! AATTTTTTAGCTGCAAATAT+AGG + Chr7:42734438-42734457 None:intergenic 20.0%
!!! ACATTGTTTTGTAAATTTGA+GGG - Chr7:42733831-42733850 MsG0780038246.01.T01:intron 20.0%
!!! ATGAATTTTGTTTATTTTGG+TGG - Chr7:42734063-42734082 MsG0780038246.01.T01:intron 20.0%
!!! TATTATCTGAGTTCATTTTA+CGG + Chr7:42732881-42732900 None:intergenic 20.0%
!!! TCCATGAATTTTGTTTATTT+TGG - Chr7:42734060-42734079 MsG0780038246.01.T01:intron 20.0%
! AAAGCCCTAATTATAAACAT+AGG - Chr7:42734279-42734298 MsG0780038246.01.T01:CDS 25.0%
! AATTTATCAAAGGGACATTA+GGG + Chr7:42731876-42731895 None:intergenic 25.0%
! ACTACTTCATTCTCATTAAT+TGG - Chr7:42733942-42733961 MsG0780038246.01.T01:intron 25.0%
! AGTCTTGATTTATGTTAATG+AGG - Chr7:42731842-42731861 MsG0780038246.01.T01:intron 25.0%
! AGTTATTATGATGACAGTTT+CGG - Chr7:42734736-42734755 MsG0780038246.01.T01:CDS 25.0%
! ATATATACCTCAATAAGTTG+AGG + Chr7:42731150-42731169 None:intergenic 25.0%
! ATGCAAAACTTATTCATTCT+TGG - Chr7:42734677-42734696 MsG0780038246.01.T01:CDS 25.0%
! CTCTTGTTGAAAAATTCATT+CGG + Chr7:42733484-42733503 None:intergenic 25.0%
! CTTATTTGTTTCAGATAAAC+AGG - Chr7:42733439-42733458 MsG0780038246.01.T01:intron 25.0%
! GATTCTTGAAATGAAAATCA+TGG - Chr7:42732251-42732270 MsG0780038246.01.T01:intron 25.0%
! GGTAATTGAGTTATTCTAAA+TGG - Chr7:42734100-42734119 MsG0780038246.01.T01:intron 25.0%
! GTCTTGATTTATGTTAATGA+GGG - Chr7:42731843-42731862 MsG0780038246.01.T01:intron 25.0%
! TAAAAAATGGAAAGAAGAGT+TGG + Chr7:42730976-42730995 None:intergenic 25.0%
! TATGTAATATTAGTCAAGCA+TGG - Chr7:42731415-42731434 MsG0780038246.01.T01:intron 25.0%
! TTAAAGTCAATATATGTTGC+TGG - Chr7:42731935-42731954 MsG0780038246.01.T01:intron 25.0%
!! AAAAGGGAAATGAGATATTT+TGG + Chr7:42731529-42731548 None:intergenic 25.0%
!! AAACATTGAAAGAAAAGCAT+CGG + Chr7:42732179-42732198 None:intergenic 25.0%
!! ATCTGAAACAAATAAGGATT+GGG + Chr7:42733435-42733454 None:intergenic 25.0%
!! CATAGTCAAATTCATTGATT+AGG + Chr7:42732923-42732942 None:intergenic 25.0%
!! CTGTTTATCTGAAACAAATA+AGG + Chr7:42733441-42733460 None:intergenic 25.0%
!! TATCTGAAACAAATAAGGAT+TGG + Chr7:42733436-42733455 None:intergenic 25.0%
!! TGAATAAGTTTTGCATATTC+TGG + Chr7:42734673-42734692 None:intergenic 25.0%
!!! CTTCTTTCCATTTTTTATCA+TGG - Chr7:42730979-42730998 MsG0780038246.01.T01:intron 25.0%
!!! TTTTTAATTCTACCAGAGAA+TGG - Chr7:42734631-42734650 MsG0780038246.01.T01:CDS 25.0%
AAACAAATAAGGATTGGGAT+GGG + Chr7:42733430-42733449 None:intergenic 30.0%
AAAGCTTAAACAAGATGTAG+TGG - Chr7:42732684-42732703 MsG0780038246.01.T01:intron 30.0%
AATCTTAACATGAATGGCAA+GGG - Chr7:42732275-42732294 MsG0780038246.01.T01:intron 30.0%
ACTTAGATTTACACAACCAA+AGG + Chr7:42731817-42731836 None:intergenic 30.0%
AGAAACACAGTTATATCGTA+TGG + Chr7:42733895-42733914 None:intergenic 30.0%
AGAATAACTCAATTACCCTT+TGG + Chr7:42734097-42734116 None:intergenic 30.0%
AGTTACATATTGATCCTGTT+GGG - Chr7:42730557-42730576 MsG0780038246.01.T01:CDS 30.0%
ATGTGCGTTAAGTTTAGTAT+TGG + Chr7:42733653-42733672 None:intergenic 30.0%
ATTACAAATTTGACCTTGGA+AGG - Chr7:42734455-42734474 MsG0780038246.01.T01:CDS 30.0%
CTTAGATTTACACAACCAAA+GGG + Chr7:42731816-42731835 None:intergenic 30.0%
GAATTTATCAAAGGGACATT+AGG + Chr7:42731877-42731896 None:intergenic 30.0%
GCCATGATTATGTTATGTTT+AGG - Chr7:42733151-42733170 MsG0780038246.01.T01:intron 30.0%
GCCTAAACATAACATAATCA+TGG + Chr7:42733155-42733174 None:intergenic 30.0%
TATATGTTGCTGGATGATTA+TGG - Chr7:42731945-42731964 MsG0780038246.01.T01:intron 30.0%
TTATCTGTTAGATGTATCAG+AGG - Chr7:42731333-42731352 MsG0780038246.01.T01:intron 30.0%
TTTCTAGATATGTCTGGTAT+GGG - Chr7:42733680-42733699 MsG0780038246.01.T01:intron 30.0%
TTTGCAAAGAGCAACAATAT+TGG - Chr7:42734600-42734619 MsG0780038246.01.T01:CDS 30.0%
TTTGTTTCAGATAAACAGGT+TGG - Chr7:42733443-42733462 MsG0780038246.01.T01:intron 30.0%
! ATTGATTAAGACGTGTTTTG+GGG - Chr7:42731979-42731998 MsG0780038246.01.T01:intron 30.0%
! GATTGATTAAGACGTGTTTT+GGG - Chr7:42731978-42731997 MsG0780038246.01.T01:intron 30.0%
! TCACAGCTTTAATAAAGTCT+TGG + Chr7:42732639-42732658 None:intergenic 30.0%
! TTAGAGTATTATCTTCGCAT+AGG - Chr7:42732454-42732473 MsG0780038246.01.T01:intron 30.0%
!! AGGTTCATCTTACTTGTTAT+AGG + Chr7:42733255-42733274 None:intergenic 30.0%
!!! AACCTTGTAATTTTAGGGTA+TGG - Chr7:42733771-42733790 MsG0780038246.01.T01:intron 30.0%
!!! GGTGAGAAGTTTTAAGTTTT+TGG - Chr7:42734549-42734568 MsG0780038246.01.T01:CDS 30.0%
AAAGGGTGGTAAACTATCTA+TGG + Chr7:42731799-42731818 None:intergenic 35.0%
AAGAGCAACAATATTGGAGA+TGG - Chr7:42734606-42734625 MsG0780038246.01.T01:CDS 35.0%
AAGTAAGATGAACCTATGAC+GGG - Chr7:42733260-42733279 MsG0780038246.01.T01:intron 35.0%
AATAGCGAAATTCTTCAGAC+AGG - Chr7:42732063-42732082 MsG0780038246.01.T01:intron 35.0%
AGCCATACCCTAAAATTACA+AGG + Chr7:42733776-42733795 None:intergenic 35.0%
AGGTTCATGGAAAGTGATTA+TGG - Chr7:42731360-42731379 MsG0780038246.01.T01:intron 35.0%
AGTTTAAGCCGATATTACTC+GGG - Chr7:42732309-42732328 MsG0780038246.01.T01:intron 35.0%
ATAACCCCAAAACAACATCT+AGG - Chr7:42732208-42732227 MsG0780038246.01.T01:intron 35.0%
ATAACTCAATTACCCTTTGG+TGG + Chr7:42734094-42734113 None:intergenic 35.0%
ATAGATAGTTTACCACCCTT+TGG - Chr7:42731798-42731817 MsG0780038246.01.T01:intron 35.0%
ATAGCGAAATTCTTCAGACA+GGG - Chr7:42732064-42732083 MsG0780038246.01.T01:intron 35.0%
ATCCAACTCATTCAAAACGT+TGG - Chr7:42734761-42734780 MsG0780038246.01.T01:CDS 35.0%
ATTCAATTGTGAAACCAGGT+TGG + Chr7:42730657-42730676 None:intergenic 35.0%
ATTCCTTAGATAGGTTCCAT+CGG - Chr7:42732812-42732831 MsG0780038246.01.T01:intron 35.0%
ATTTAAGTATTTGCGCGCAA+GGG - Chr7:42731482-42731501 MsG0780038246.01.T01:intron 35.0%
CAAGAAACAACAACAAGAAG+TGG - Chr7:42731690-42731709 MsG0780038246.01.T01:intron 35.0%
CAAGTAAGATGAACCTATGA+CGG - Chr7:42733259-42733278 MsG0780038246.01.T01:intron 35.0%
CAATCTTAACATGAATGGCA+AGG - Chr7:42732274-42732293 MsG0780038246.01.T01:intron 35.0%
CAATTGTTCGAATTGCTCAA+GGG - Chr7:42731010-42731029 MsG0780038246.01.T01:intron 35.0%
CAGTTACATATTGATCCTGT+TGG - Chr7:42730556-42730575 MsG0780038246.01.T01:CDS 35.0%
CATGGCAATCTTAACATGAA+TGG - Chr7:42732269-42732288 MsG0780038246.01.T01:intron 35.0%
CTAGACTTTCTAGATATGTC+TGG - Chr7:42733674-42733693 MsG0780038246.01.T01:intron 35.0%
CTCTTTCAAGAATCAACAAG+TGG - Chr7:42731636-42731655 MsG0780038246.01.T01:intron 35.0%
CTTTCTAGATATGTCTGGTA+TGG - Chr7:42733679-42733698 MsG0780038246.01.T01:intron 35.0%
GAAACAAATAAGGATTGGGA+TGG + Chr7:42733431-42733450 None:intergenic 35.0%
GAGAAGCAAGAAACATGTTT+AGG - Chr7:42731767-42731786 MsG0780038246.01.T01:intron 35.0%
GAGCTTCAATTATTGATGGA+TGG - Chr7:42733853-42733872 MsG0780038246.01.T01:intron 35.0%
GAGTTTAAGCCGATATTACT+CGG - Chr7:42732308-42732327 MsG0780038246.01.T01:intron 35.0%
GATTCTTGAAAGAGTTTGAG+TGG + Chr7:42731630-42731649 None:intergenic 35.0%
GATTGCATGTATTCTCTTGA+TGG + Chr7:42731069-42731088 None:intergenic 35.0%
GCATTAAGTTTACCTCTAGA+TGG - Chr7:42732549-42732568 MsG0780038246.01.T01:intron 35.0%
GTAGATTCAATTGTGAAACC+AGG + Chr7:42730661-42730680 None:intergenic 35.0%
TACCTATAGCCTAGGATTTA+GGG - Chr7:42733383-42733402 MsG0780038246.01.T01:intron 35.0%
TACTCAACTTAAAGTTGCAG+TGG - Chr7:42734528-42734547 MsG0780038246.01.T01:CDS 35.0%
TAGATCGTCAAGAACTAGTA+TGG - Chr7:42733018-42733037 MsG0780038246.01.T01:intron 35.0%
TGCAAAAATTGCAAACCACT+TGG + Chr7:42730754-42730773 None:intergenic 35.0%
TTACCTATAGCCTAGGATTT+AGG - Chr7:42733382-42733401 MsG0780038246.01.T01:intron 35.0%
TTGAAAGAGTTTGAGTGGAT+TGG + Chr7:42731625-42731644 None:intergenic 35.0%
TTGGTAGATCAAGAATGAAG+AGG - Chr7:42731715-42731734 MsG0780038246.01.T01:intron 35.0%
TTTGAGAATCGATTGTTGTG+AGG - Chr7:42730924-42730943 MsG0780038246.01.T01:intron 35.0%
! AATTTGACCTTGGAAGGTAT+TGG - Chr7:42734461-42734480 MsG0780038246.01.T01:CDS 35.0%
! ACAACAACAAGAAGTGGTTT+TGG - Chr7:42731696-42731715 MsG0780038246.01.T01:intron 35.0%
! ACATGCTATCTCTTTTACCT+CGG + Chr7:42732588-42732607 None:intergenic 35.0%
! GGATTGATTAAGACGTGTTT+TGG - Chr7:42731977-42731996 MsG0780038246.01.T01:intron 35.0%
! TCGAAGTTTTGCTTAAGAGA+TGG - Chr7:42730581-42730600 MsG0780038246.01.T01:CDS 35.0%
! TCGTTGGTTATTCCTTAGAT+AGG - Chr7:42732803-42732822 MsG0780038246.01.T01:intron 35.0%
! TGAAAGAGTTTGAGTGGATT+GGG + Chr7:42731624-42731643 None:intergenic 35.0%
!! AGGGAGTATATAAGTGGTTT+TGG - Chr7:42731501-42731520 MsG0780038246.01.T01:intron 35.0%
!! ATCCAACGTTTTGAATGAGT+TGG + Chr7:42734766-42734785 None:intergenic 35.0%
!! ATTTGACCTTGGAAGGTATT+GGG - Chr7:42734462-42734481 MsG0780038246.01.T01:CDS 35.0%
!! TTCTTGGAAAGCATCAACAA+AGG - Chr7:42734693-42734712 MsG0780038246.01.T01:CDS 35.0%
!!! AATTTTAGGGTATGGCTGTA+AGG - Chr7:42733779-42733798 MsG0780038246.01.T01:intron 35.0%
!!! ATTGCCTAGATGTTGTTTTG+GGG + Chr7:42732215-42732234 None:intergenic 35.0%
!!! CATTGCCTAGATGTTGTTTT+GGG + Chr7:42732216-42732235 None:intergenic 35.0%
AAAGCTTCCACAATCCTTGT+TGG + Chr7:42731665-42731684 None:intergenic 40.0%
AAATCCATAACATCCTGCTG+CGG + Chr7:42733518-42733537 None:intergenic 40.0%
AAGATACGCTCTACGTATTG+AGG + Chr7:42733177-42733196 None:intergenic 40.0%
AATCGATTGTTGTGAGGACT+TGG - Chr7:42730930-42730949 MsG0780038246.01.T01:intron 40.0%
ACAAGGATTGTGGAAGCTTT+AGG - Chr7:42731665-42731684 MsG0780038246.01.T01:intron 40.0%
ACCTAGAGAGAGAAGTGAAA+AGG + Chr7:42731546-42731565 None:intergenic 40.0%
ACCTATAGCCTAGGATTTAG+GGG - Chr7:42733384-42733403 MsG0780038246.01.T01:intron 40.0%
ACTTGTCAAGCTGAGGTTTA+TGG + Chr7:42734495-42734514 None:intergenic 40.0%
AGATTTACACAACCAAAGGG+TGG + Chr7:42731813-42731832 None:intergenic 40.0%
AGTTTCCTTTAGCTGATGAG+CGG + Chr7:42731313-42731332 None:intergenic 40.0%
ATCATGGCACGATTCTAAAC+CGG + Chr7:42733139-42733158 None:intergenic 40.0%
ATGCACTAAGAAGGATCTAG+AGG - Chr7:42730612-42730631 MsG0780038246.01.T01:CDS 40.0%
ATTCTAAACCGGACGATTAG+GGG + Chr7:42733128-42733147 None:intergenic 40.0%
ATTCTTGACGATCTACGTCA+AGG + Chr7:42732982-42733001 None:intergenic 40.0%
CAAGAATGAAGAGGAAGCTA+GGG - Chr7:42731724-42731743 MsG0780038246.01.T01:intron 40.0%
CAAGGATTGTGGAAGCTTTA+GGG - Chr7:42731666-42731685 MsG0780038246.01.T01:intron 40.0%
CAATACGTAGAGCGTATCTT+TGG - Chr7:42733177-42733196 MsG0780038246.01.T01:intron 40.0%
CAATGCTCAATCAACATACC+AGG + Chr7:42730817-42730836 None:intergenic 40.0%
CACTACACCTCAACTTATTG+AGG - Chr7:42731140-42731159 MsG0780038246.01.T01:intron 40.0%
CAGTTACCAAATGTTCCAAG+TGG - Chr7:42730736-42730755 MsG0780038246.01.T01:CDS 40.0%
CATGGAAAGTGATTATGGTG+AGG - Chr7:42731365-42731384 MsG0780038246.01.T01:intron 40.0%
CATTTAAGTATTTGCGCGCA+AGG - Chr7:42731481-42731500 MsG0780038246.01.T01:intron 40.0%
CCAATTGTTCGAATTGCTCA+AGG - Chr7:42731009-42731028 MsG0780038246.01.T01:intron 40.0%
CCTAGAGAGAGAAGTGAAAA+GGG + Chr7:42731545-42731564 None:intergenic 40.0%
CCTTGAGCAATTCGAACAAT+TGG + Chr7:42731012-42731031 None:intergenic 40.0%
CTAAAGTGACCATACGAGTA+TGG - Chr7:42732479-42732498 MsG0780038246.01.T01:intron 40.0%
GAGGGAGCTTCAATTATTGA+TGG - Chr7:42733849-42733868 MsG0780038246.01.T01:intron 40.0%
GATTCTAAACCGGACGATTA+GGG + Chr7:42733129-42733148 None:intergenic 40.0%
GCAGGATGTTATGGATTTCA+AGG - Chr7:42733520-42733539 MsG0780038246.01.T01:intron 40.0%
GGGTAGCGATGAATTAAGAA+GGG - Chr7:42732329-42732348 MsG0780038246.01.T01:intron 40.0%
GGTAGCGATGAATTAAGAAG+GGG - Chr7:42732330-42732349 MsG0780038246.01.T01:intron 40.0%
GTCAAGAATTAGTAGAGCCT+TGG - Chr7:42732993-42733012 MsG0780038246.01.T01:intron 40.0%
GTGAGGAATGTTAAGTACGA+CGG - Chr7:42731382-42731401 MsG0780038246.01.T01:intron 40.0%
GTGTCTACAATACAACCTGA+CGG + Chr7:42733336-42733355 None:intergenic 40.0%
GTTGCAAGTATGCACTAAGA+AGG - Chr7:42730603-42730622 MsG0780038246.01.T01:CDS 40.0%
TAACCGATGGAACCTATCTA+AGG + Chr7:42732818-42732837 None:intergenic 40.0%
TACCTCTAGATGGATCGTAT+AGG - Chr7:42732559-42732578 MsG0780038246.01.T01:intron 40.0%
TCAACAAGTGGTAACCAACA+AGG - Chr7:42731648-42731667 MsG0780038246.01.T01:intron 40.0%
TCAAGAATGAAGAGGAAGCT+AGG - Chr7:42731723-42731742 MsG0780038246.01.T01:intron 40.0%
TCGCTAATTGCGAGTTTCTT+CGG + Chr7:42732033-42732052 None:intergenic 40.0%
TGCAAACCACTTGGAACATT+TGG + Chr7:42730745-42730764 None:intergenic 40.0%
TGGACTTATGTATCAGTGTC+AGG - Chr7:42731435-42731454 MsG0780038246.01.T01:intron 40.0%
TGGGGTCAAAATGGCAAATT+TGG - Chr7:42731997-42732016 MsG0780038246.01.T01:intron 40.0%
TTAGATGTATCAGAGGACTC+AGG - Chr7:42731340-42731359 MsG0780038246.01.T01:intron 40.0%
TTCACTTCCTATACGTGTCA+TGG + Chr7:42733231-42733250 None:intergenic 40.0%
TTCCTATACGATCCATCTAG+AGG + Chr7:42732564-42732583 None:intergenic 40.0%
! ATAGGTTCCATCGGTTAGAT+AGG - Chr7:42732821-42732840 MsG0780038246.01.T01:intron 40.0%
! ATCTTTGGCAATGCGGTTTT+AGG - Chr7:42733192-42733211 MsG0780038246.01.T01:intron 40.0%
! CACTTCTCTCTCTAGGTTTT+GGG - Chr7:42731549-42731568 MsG0780038246.01.T01:intron 40.0%
! CACTTGGAACATTTGGTAAC+TGG + Chr7:42730738-42730757 None:intergenic 40.0%
! CTCAATAAGTTGAGGTGTAG+TGG + Chr7:42731142-42731161 None:intergenic 40.0%
! TAGGTTCCATCGGTTAGATA+GGG - Chr7:42732822-42732841 MsG0780038246.01.T01:intron 40.0%
! TCACTTCTCTCTCTAGGTTT+TGG - Chr7:42731548-42731567 MsG0780038246.01.T01:intron 40.0%
!! GCATTGCCTAGATGTTGTTT+TGG + Chr7:42732217-42732236 None:intergenic 40.0%
AACTCGCTACATCCATTCTC+TGG + Chr7:42734646-42734665 None:intergenic 45.0%
AATCCATAACATCCTGCTGC+GGG + Chr7:42733517-42733536 None:intergenic 45.0%
ACTTCCTATACGTGTCATGG+CGG + Chr7:42733228-42733247 None:intergenic 45.0%
AGAGCGTATCTTTGGCAATG+CGG - Chr7:42733185-42733204 MsG0780038246.01.T01:intron 45.0%
AGCAAAACTTCGATCCCAAC+AGG + Chr7:42730574-42730593 None:intergenic 45.0%
AGTGAGTTCCCCTAAATCCT+AGG + Chr7:42733395-42733414 None:intergenic 45.0%
AGTTAGCCGTTGACGATCTT+AGG - Chr7:42733099-42733118 MsG0780038246.01.T01:intron 45.0%
ATGGATCGTATAGGAATCCG+AGG - Chr7:42732568-42732587 MsG0780038246.01.T01:intron 45.0%
ATGGCTGTAAGGATTCGTGA+TGG - Chr7:42733790-42733809 MsG0780038246.01.T01:intron 45.0%
CAAACACGCGTTAAGACGAA+GGG - Chr7:42731458-42731477 MsG0780038246.01.T01:intron 45.0%
CACAATCCCTATCTAACCGA+TGG + Chr7:42732831-42732850 None:intergenic 45.0%
CACACGTATAATCAACCGTC+AGG - Chr7:42733318-42733337 MsG0780038246.01.T01:intron 45.0%
CACATCACTGAAGAAATGCC+TGG - Chr7:42730796-42730815 MsG0780038246.01.T01:CDS 45.0%
CAGGCATTTCTTCAGTGATG+TGG + Chr7:42730798-42730817 None:intergenic 45.0%
CAGGTTGTATTGTAGACACG+TGG - Chr7:42733337-42733356 MsG0780038246.01.T01:intron 45.0%
CATCGCTACCCGAGTAATAT+CGG + Chr7:42732320-42732339 None:intergenic 45.0%
CGATTCTAAACCGGACGATT+AGG + Chr7:42733130-42733149 None:intergenic 45.0%
CGCTAATTGCGAGTTTCTTC+GGG + Chr7:42732032-42732051 None:intergenic 45.0%
CGGGTAGCGATGAATTAAGA+AGG - Chr7:42732328-42732347 MsG0780038246.01.T01:intron 45.0%
CTAGGCTATAGGTAACCTCA+GGG + Chr7:42733377-42733396 None:intergenic 45.0%
GACGGTTGATTATACGTGTG+TGG + Chr7:42733318-42733337 None:intergenic 45.0%
GCAATTCCCAATACCTTCCA+AGG + Chr7:42734471-42734490 None:intergenic 45.0%
GCGCATATTTAGAGAGAAGG+TGG + Chr7:42731588-42731607 None:intergenic 45.0%
GCTGACATGTGCGAAATCTT+TGG + Chr7:42731112-42731131 None:intergenic 45.0%
GGATGATTATGGTGCATTGC+AGG - Chr7:42731956-42731975 MsG0780038246.01.T01:intron 45.0%
GGGAAACCTAAGATCGTCAA+CGG + Chr7:42733108-42733127 None:intergenic 45.0%
GGTTAGATAGGGATTGTGCT+CGG - Chr7:42732833-42732852 MsG0780038246.01.T01:intron 45.0%
GGTTTGATGCTTGATGCTTG+AGG - Chr7:42731745-42731764 MsG0780038246.01.T01:intron 45.0%
GTGGTAACCAACAAGGATTG+TGG - Chr7:42731655-42731674 MsG0780038246.01.T01:intron 45.0%
GTTAGATAGGGATTGTGCTC+GGG - Chr7:42732834-42732853 MsG0780038246.01.T01:intron 45.0%
GTTCTTGACACGCTATGTCA+AGG + Chr7:42732369-42732388 None:intergenic 45.0%
GTTTCCTTTAGCTGATGAGC+GGG + Chr7:42731312-42731331 None:intergenic 45.0%
TAGGCTATAGGTAACCTCAG+GGG + Chr7:42733376-42733395 None:intergenic 45.0%
TATCAGAGGACTCAGGTTCA+TGG - Chr7:42731347-42731366 MsG0780038246.01.T01:intron 45.0%
TCCCCTAAATCCTAGGCTAT+AGG + Chr7:42733388-42733407 None:intergenic 45.0%
TCTTGTGTTCCACACTAGGT+TGG - Chr7:42732714-42732733 MsG0780038246.01.T01:intron 45.0%
TGATTGCACTTGTCAAGCTG+AGG + Chr7:42734502-42734521 None:intergenic 45.0%
TGGCTGTAAGGATTCGTGAT+GGG - Chr7:42733791-42733810 MsG0780038246.01.T01:intron 45.0%
TGTCTCTTGTGTTCCACACT+AGG - Chr7:42732710-42732729 MsG0780038246.01.T01:intron 45.0%
TTAGGTTTCCCCTAATCGTC+CGG - Chr7:42733117-42733136 MsG0780038246.01.T01:intron 45.0%
! AATAGCGCAGGTCTCTGTTT+TGG - Chr7:42732105-42732124 MsG0780038246.01.T01:intron 45.0%
! CCCTTTTCACTTCTCTCTCT+AGG - Chr7:42731542-42731561 MsG0780038246.01.T01:intron 45.0%
! GAGCTGTCTTTTTACCAACC+TGG - Chr7:42730640-42730659 MsG0780038246.01.T01:CDS 45.0%
! TGTGGTCATGTTTTCCTGGA+CGG + Chr7:42733300-42733319 None:intergenic 45.0%
! TTGGTGGACAATCCACCAAA+GGG - Chr7:42734079-42734098 MsG0780038246.01.T01:intron 45.0%
! TTTGGTGGACAATCCACCAA+AGG - Chr7:42734078-42734097 MsG0780038246.01.T01:intron 45.0%
!! GTTTTGGCCAGCATGCTTTT+TGG - Chr7:42732121-42732140 MsG0780038246.01.T01:intron 45.0%
!! TTTGAGTGGATTGGGAGAGA+AGG + Chr7:42731616-42731635 None:intergenic 45.0%
!! TTTGGCTGTTGGCTCATTGT+GGG - Chr7:42732139-42732158 MsG0780038246.01.T01:intron 45.0%
!!! GACGTGTTTTGGGGTCAAAA+TGG - Chr7:42731988-42732007 MsG0780038246.01.T01:intron 45.0%
!!! TTTTGGCTGTTGGCTCATTG+TGG - Chr7:42732138-42732157 MsG0780038246.01.T01:intron 45.0%
ACATCCCGCTCATCAGCTAA+AGG - Chr7:42731305-42731324 MsG0780038246.01.T01:intron 50.0%
CACGTCTTGCCATACTCGTA+TGG + Chr7:42732491-42732510 None:intergenic 50.0%
CCTAGGCTATAGGTAACCTC+AGG + Chr7:42733378-42733397 None:intergenic 50.0%
CCTGAGGTTACCTATAGCCT+AGG - Chr7:42733375-42733394 MsG0780038246.01.T01:intron 50.0%
GCAAACACGCGTTAAGACGA+AGG - Chr7:42731457-42731476 MsG0780038246.01.T01:intron 50.0%
GGCTGTAAGGATTCGTGATG+GGG - Chr7:42733792-42733811 MsG0780038246.01.T01:intron 50.0%
GGGGCGCATATTTAGAGAGA+AGG + Chr7:42731591-42731610 None:intergenic 50.0%
GGTTTCCACTAGGTGAGACA+GGG - Chr7:42732744-42732763 MsG0780038246.01.T01:intron 50.0%
GTAACCTCAGGGGAAACCTA+CGG + Chr7:42733366-42733385 None:intergenic 50.0%
GTTCTTGACGATCTACGCCA+AGG + Chr7:42733013-42733032 None:intergenic 50.0%
! CCAACAGCCAAAAAGCATGC+TGG + Chr7:42732131-42732150 None:intergenic 50.0%
! CGCGCAAGGGAGTATATAAG+TGG - Chr7:42731495-42731514 MsG0780038246.01.T01:intron 50.0%
! CGTGTGTGGTCATGTTTTCC+TGG + Chr7:42733304-42733323 None:intergenic 50.0%
! GTTCATTTTACGGAGAGCCC+CGG + Chr7:42732871-42732890 None:intergenic 50.0%
! TCCACACTAGGTTGGCTCAA+GGG - Chr7:42732722-42732741 MsG0780038246.01.T01:intron 50.0%
! TTCATTTTACGGAGAGCCCC+GGG + Chr7:42732870-42732889 None:intergenic 50.0%
! TTCCACACTAGGTTGGCTCA+AGG - Chr7:42732721-42732740 MsG0780038246.01.T01:intron 50.0%
!! AGTGGATTGGGAGAGAAGGA+GGG + Chr7:42731612-42731631 None:intergenic 50.0%
!! GTGAGACAGGGTTAGCCATA+AGG - Chr7:42732756-42732775 MsG0780038246.01.T01:intron 50.0%
!! TTGGCTGTTGGCTCATTGTG+GGG - Chr7:42732140-42732159 MsG0780038246.01.T01:intron 50.0%
!!! CCAGCATGCTTTTTGGCTGT+TGG - Chr7:42732128-42732147 MsG0780038246.01.T01:intron 50.0%
AGTGACGTGCGGGATCCTTA+TGG + Chr7:42732774-42732793 None:intergenic 55.0%
ATACGTGTCATGGCGGTCGA+GGG + Chr7:42733221-42733240 None:intergenic 55.0%
CCTAGTATGCACTACCGTCC+AGG - Chr7:42733283-42733302 MsG0780038246.01.T01:intron 55.0%
CCTGGACGGTAGTGCATACT+AGG + Chr7:42733286-42733305 None:intergenic 55.0%
GCTAACCCTGTCTCACCTAG+TGG + Chr7:42732752-42732771 None:intergenic 55.0%
GGGTTTCCACTAGGTGAGAC+AGG - Chr7:42732743-42732762 MsG0780038246.01.T01:intron 55.0%
GTACCCGCAGCAGGATGTTA+TGG - Chr7:42733511-42733530 MsG0780038246.01.T01:intron 55.0%
GTGCATACTAGGCCCGTCAT+AGG + Chr7:42733275-42733294 None:intergenic 55.0%
TATACGTGTCATGGCGGTCG+AGG + Chr7:42733222-42733241 None:intergenic 55.0%
TCGACCGCCATGACACGTAT+AGG - Chr7:42733221-42733240 MsG0780038246.01.T01:intron 55.0%
TGCGAGTTTCTTCGGGTCTG+TGG + Chr7:42732025-42732044 None:intergenic 55.0%
TGGCTCAAGGGGTTTCCACT+AGG - Chr7:42732734-42732753 MsG0780038246.01.T01:intron 55.0%
TGTAGACACGTGGTGACCGT+AGG - Chr7:42733347-42733366 MsG0780038246.01.T01:intron 55.0%
! CCACACTAGGTTGGCTCAAG+GGG - Chr7:42732723-42732742 MsG0780038246.01.T01:intron 55.0%
! TCATTTTACGGAGAGCCCCG+GGG + Chr7:42732869-42732888 None:intergenic 55.0%
! TGGATTGGGAGAGAAGGAGG+GGG + Chr7:42731610-42731629 None:intergenic 55.0%
!! CTGTTGGCTCATTGTGGGGT+CGG - Chr7:42732144-42732163 MsG0780038246.01.T01:intron 55.0%
!! GAGTGGATTGGGAGAGAAGG+AGG + Chr7:42731613-42731632 None:intergenic 55.0%
!! GTGGATTGGGAGAGAAGGAG+GGG + Chr7:42731611-42731630 None:intergenic 55.0%
ACACTCCTGCAGTGACGTGC+GGG + Chr7:42732784-42732803 None:intergenic 60.0%
ACCTGCGCTATTAGCGCACC+TGG + Chr7:42732097-42732116 None:intergenic 60.0%
AGATCGTTCGTACCCGCAGC+AGG - Chr7:42733502-42733521 MsG0780038246.01.T01:intron 60.0%
CCCCTTGAGCCAACCTAGTG+TGG + Chr7:42732726-42732745 None:intergenic 60.0%
CCTGCGCTATTAGCGCACCT+GGG + Chr7:42732096-42732115 None:intergenic 60.0%
CTGCGCTATTAGCGCACCTG+GGG + Chr7:42732095-42732114 None:intergenic 60.0%
GACACTCCTGCAGTGACGTG+CGG + Chr7:42732785-42732804 None:intergenic 60.0%
GTGACCGTAGGTTTCCCCTG+AGG - Chr7:42733359-42733378 MsG0780038246.01.T01:intron 60.0%
TACGTGTCATGGCGGTCGAG+GGG + Chr7:42733220-42733239 None:intergenic 60.0%
TGCTCGGGTTTACTCCACCC+CGG - Chr7:42732849-42732868 MsG0780038246.01.T01:intron 60.0%
TTGGCTCATTGTGGGGTCGG+TGG - Chr7:42732147-42732166 MsG0780038246.01.T01:intron 60.0%
!! CGTCACTGCAGGAGTGTCGT+TGG - Chr7:42732787-42732806 MsG0780038246.01.T01:intron 60.0%
AGGATCCCGCACGTCACTGC+AGG - Chr7:42732776-42732795 MsG0780038246.01.T01:intron 65.0%
CCCAGGTGCGCTAATAGCGC+AGG - Chr7:42732093-42732112 MsG0780038246.01.T01:intron 65.0%
CTATTAGCGCACCTGGGGCG+TGG + Chr7:42732090-42732109 None:intergenic 65.0%
CTCGGGTTTACTCCACCCCG+GGG - Chr7:42732851-42732870 MsG0780038246.01.T01:intron 65.0%
GCTCGGGTTTACTCCACCCC+GGG - Chr7:42732850-42732869 MsG0780038246.01.T01:intron 65.0%
! TTTTACGGAGAGCCCCGGGG+TGG + Chr7:42732866-42732885 None:intergenic 65.0%
TTCAGACAGGGCCACGCCCC+AGG - Chr7:42732076-42732095 MsG0780038246.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 42730526 42734804 42730526 ID=MsG0780038246.01;Name=MsG0780038246.01
Chr7 mRNA 42730526 42734804 42730526 ID=MsG0780038246.01.T01;Parent=MsG0780038246.01;Name=MsG0780038246.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|330
Chr7 exon 42734169 42734804 42734169 ID=MsG0780038246.01.T01:exon:7692;Parent=MsG0780038246.01.T01
Chr7 exon 42730526 42730882 42730526 ID=MsG0780038246.01.T01:exon:7691;Parent=MsG0780038246.01.T01
Chr7 CDS 42734169 42734804 42734169 ID=MsG0780038246.01.T01:cds;Parent=MsG0780038246.01.T01
Chr7 CDS 42730526 42730882 42730526 ID=MsG0780038246.01.T01:cds;Parent=MsG0780038246.01.T01
Gene Sequence

>MsG0780038246.01.T01

ATGAAGGTGAAGACATTAATTAAAACGTTTCAGTTACATATTGATCCTGTTGGGATCGAAGTTTTGCTTAAGAGATGGTTGCAAGTATGCACTAAGAAGGATCTAGAGGATCTTGAGCTGTCTTTTTACCAACCTGGTTTCACAATTGAATCTACTGTTTTTAACGCACTGCACAAGTTAAAAACACTAAAATTGGTTCAATGTGTGATCCAGTTACCAAATGTTCCAAGTGGTTTGCAATTTTTGCAAAAGCTAAAGCTAGCTAACATCCACATCACTGAAGAAATGCCTGGTATGTTGATTGAGCATTGTAAGATGCTTGAAATGATTGTTTCAATTAATTGCTCTACAATTAAGAAATTGAAATTAATTGCTAGACAAAATAAATATTTCAAAAATTTGAGAATCGATTGTTGTGAGGACTTGGAAGAGATTGAAATCGATTCACCAACTCTTCTTTCCATTTTTTATCATGGAAAATTTCCAATTGTTCGAATTGCTCAAGGGATGCAATTGTACGATGCTTTATTTCGCTTTACACCATCAAGAGAATACATGCAATCTACTCAGCTAGAAGCTCTTGCCAAAGATTTCGCACATGTCAGCATTCTCACCACTACACCTCAACTTATTGAGCTAAAAAATTACAAATTTGACCTTGGAAGGTATTGGGAATTGCACCATAAACCTCAGCTTGACAAGTGCAATCACAAATTTACTCAACTTAAAGTTGCAGTGGTGAGAAGTTTTAAGTTTTTGGCTTCAGAACTTGAGCTACTAAAGATAATTTTGCAAAGAGCAACAATATTGGAGATGGTATTTTTAATTCTACCAGAGAATGGATGTAGCGAGTTCAGACCAGAATATGCAAAACTTATTCATTCTTGGAAAGCATCAACAAAGGCCAAAGTATATGTATATGAAAGTTATTATGATGACAGTTTCGGTAATCCAACTCATTCAAAACGTTGGATCCTAGACGCAATGTTATGA
Protein sequence

>MsG0780038246.01.T01

MKVKTLIKTFQLHIDPVGIEVLLKRWLQVCTKKDLEDLELSFYQPGFTIESTVFNALHKLKTLKLVQCVIQLPNVPSGLQFLQKLKLANIHITEEMPGMLIEHCKMLEMIVSINCSTIKKLKLIARQNKYFKNLRIDCCEDLEEIEIDSPTLLSIFYHGKFPIVRIAQGMQLYDALFRFTPSREYMQSTQLEALAKDFAHVSILTTTPQLIELKNYKFDLGRYWELHHKPQLDKCNHKFTQLKVAVVRSFKFLASELELLKIILQRATILEMVFLILPENGCSEFRPEYAKLIHSWKASTKAKVYVYESYYDDSFGNPTHSKRWILDAML*