AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028522.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028522.01.T01 MTR_5g058100 49.459 370 120 8 5 328 1 349 7.54e-102 305
MsG0580028522.01.T01 MTR_1g066830 46.237 372 130 6 5 327 1 351 4.36e-98 295
MsG0580028522.01.T01 MTR_5g058000 47.074 376 133 8 5 338 1 352 1.26e-94 286
MsG0580028522.01.T01 MTR_5g073420 45.810 358 152 7 3 331 2 346 4.83e-92 280
MsG0580028522.01.T01 MTR_6g040270 45.330 364 137 7 5 327 1 343 1.05e-89 274
MsG0580028522.01.T01 MTR_1089s0010 44.628 363 139 6 5 327 1 341 1.16e-89 273
MsG0580028522.01.T01 MTR_1g085120 43.089 369 135 9 12 328 92 437 2.19e-81 255
MsG0580028522.01.T01 MTR_1g085120 43.089 369 135 9 12 328 167 512 8.06e-81 256
MsG0580028522.01.T01 MTR_6g011460 43.700 373 146 9 6 335 40 391 4.46e-79 248
MsG0580028522.01.T01 MTR_4g039440 42.432 370 134 13 11 328 33 375 3.44e-75 238
MsG0580028522.01.T01 MTR_6g022500 40.599 367 145 11 11 328 100 442 8.24e-71 228
MsG0580028522.01.T01 MTR_3g095600 39.941 338 112 6 11 329 3 268 1.59e-66 211
MsG0580028522.01.T01 MTR_7g055943 38.874 373 153 10 8 327 36 386 7.96e-66 214
MsG0580028522.01.T01 MTR_6g022360 38.147 367 144 9 11 328 42 374 2.87e-63 206
MsG0580028522.01.T01 MTR_1g108820 38.727 377 152 12 5 328 1 351 2.99e-59 195
MsG0580028522.01.T01 MTR_7g026500 34.625 387 166 11 2 328 4 363 4.00e-57 190
MsG0580028522.01.T01 MTR_6g022520 54.255 188 74 5 153 328 92 279 1.66e-56 186
MsG0580028522.01.T01 MTR_5g061680 37.389 337 125 8 3 297 2 294 3.27e-56 186
MsG0580028522.01.T01 MTR_5g076150 51.309 191 68 4 129 294 37 227 4.88e-55 180
MsG0580028522.01.T01 MTR_1g108800 42.012 338 152 15 5 328 1 308 1.16e-53 179
MsG0580028522.01.T01 MTR_1g085120 39.297 313 116 8 12 273 179 468 2.96e-53 182
MsG0580028522.01.T01 MTR_5g073370 36.240 367 157 13 12 327 5 345 2.65e-50 172
MsG0580028522.01.T01 MTR_1377s0010 63.200 125 45 1 204 327 1 125 3.78e-49 161
MsG0580028522.01.T01 MTR_3g095630 54.777 157 67 3 181 335 3 157 6.23e-48 160
MsG0580028522.01.T01 MTR_5g045170 34.844 353 179 9 14 327 16 356 6.99e-48 166
MsG0580028522.01.T01 MTR_5g033200 58.209 134 56 0 194 327 11 144 1.10e-47 159
MsG0580028522.01.T01 MTR_5g007410 30.663 362 187 9 14 327 28 373 1.29e-44 159
MsG0580028522.01.T01 MTR_0009s0080 32.199 382 181 11 1 327 7 365 2.53e-44 157
MsG0580028522.01.T01 MTR_5g073340 38.095 315 159 12 5 298 1 300 2.33e-42 149
MsG0580028522.01.T01 MTR_6g045333 31.234 381 181 10 6 328 55 412 2.39e-42 152
MsG0580028522.01.T01 MTR_5g039450 33.333 357 176 11 8 327 2 333 2.42e-42 150
MsG0580028522.01.T01 MTR_1g108820 35.714 322 134 8 5 275 1 300 4.27e-41 147
MsG0580028522.01.T01 MTR_7g098480 31.285 358 201 10 4 328 10 355 3.06e-40 147
MsG0580028522.01.T01 MTR_3g107100 33.973 365 189 13 3 327 2 354 8.24e-40 145
MsG0580028522.01.T01 MTR_7g098510 33.518 361 189 14 4 327 10 356 3.05e-39 143
MsG0580028522.01.T01 MTR_7g098570 32.295 353 202 12 6 328 14 359 5.57e-38 141
MsG0580028522.01.T01 MTR_7g056433 32.970 367 193 13 1 327 1 354 1.11e-37 139
MsG0580028522.01.T01 MTR_5g054920 41.209 182 92 4 161 331 2 179 1.48e-37 133
MsG0580028522.01.T01 MTR_1g041245 33.708 356 186 15 11 328 10 353 1.63e-37 138
MsG0580028522.01.T01 MTR_3g071850 30.376 372 186 9 11 328 23 375 4.32e-37 142
MsG0580028522.01.T01 MTR_3g107120 31.649 376 194 12 1 327 1 362 7.39e-37 137
MsG0580028522.01.T01 MTR_3g099830 30.959 365 193 12 1 327 1 344 1.01e-36 136
MsG0580028522.01.T01 MTR_2g036470 33.240 358 187 16 12 327 14 361 1.84e-36 135
MsG0580028522.01.T01 MTR_3g036250 31.429 350 187 10 12 327 5 335 7.07e-36 133
MsG0580028522.01.T01 MTR_5g083890 30.769 377 190 13 12 327 6 372 5.01e-35 134
MsG0580028522.01.T01 MTR_3g108150 32.958 355 186 10 12 328 13 353 8.51e-35 131
MsG0580028522.01.T01 MTR_7g075820 30.811 370 191 11 12 327 6 364 1.22e-34 130
MsG0580028522.01.T01 MTR_5g039470 31.124 347 168 11 29 325 2 327 2.66e-34 128
MsG0580028522.01.T01 MTR_5g045510 30.925 346 193 8 11 328 11 338 4.17e-34 129
MsG0580028522.01.T01 MTR_7g115270 31.620 389 202 15 1 338 1 376 4.70e-34 129
MsG0580028522.01.T01 MTR_3g107160 30.110 362 192 12 12 328 10 355 1.46e-33 127
MsG0580028522.01.T01 MTR_7g033915 33.533 334 193 13 11 327 10 331 3.42e-33 126
MsG0580028522.01.T01 MTR_1g053025 30.000 370 195 11 11 327 1 359 4.42e-33 126
MsG0580028522.01.T01 MTR_6g044572 39.706 204 95 6 132 327 167 350 1.80e-31 122
MsG0580028522.01.T01 MTR_6g044572 27.863 262 130 8 11 267 1 208 8.77e-14 72.0
MsG0580028522.01.T01 MTR_7g007340 32.394 355 184 16 1 327 1 327 3.56e-31 121
MsG0580028522.01.T01 MTR_2g007400 30.208 384 202 16 1 328 1 374 3.56e-31 121
MsG0580028522.01.T01 MTR_7g083740 29.240 342 213 6 3 328 8 336 6.44e-31 120
MsG0580028522.01.T01 MTR_6g044560 39.706 204 95 6 132 327 343 526 1.95e-30 121
MsG0580028522.01.T01 MTR_6g044560 27.798 277 141 8 6 277 172 394 1.08e-14 75.5
MsG0580028522.01.T01 MTR_0492s0020 30.952 336 206 8 12 327 86 415 2.36e-30 120
MsG0580028522.01.T01 MTR_3g040700 28.977 352 186 11 9 321 40 366 2.46e-30 120
MsG0580028522.01.T01 MTR_2g007450 28.426 394 195 10 7 327 11 390 2.73e-30 119
MsG0580028522.01.T01 MTR_0543s0010 30.952 336 206 8 12 327 86 415 3.00e-30 120
MsG0580028522.01.T01 MTR_7g034120 37.156 218 122 7 132 337 75 289 2.12e-29 115
MsG0580028522.01.T01 MTR_7g088260 31.233 365 175 12 12 327 91 428 2.40e-29 117
MsG0580028522.01.T01 MTR_3g108560 32.565 347 193 12 12 328 20 355 8.07e-29 115
MsG0580028522.01.T01 MTR_2g007360 30.108 372 185 18 1 327 1 342 8.97e-29 114
MsG0580028522.01.T01 MTR_5g058350 42.778 180 90 4 5 182 1 169 1.06e-28 109
MsG0580028522.01.T01 MTR_5g039490 31.445 353 182 14 8 327 16 341 1.40e-28 114
MsG0580028522.01.T01 MTR_6g033095 39.362 188 61 3 141 327 47 182 2.17e-28 109
MsG0580028522.01.T01 MTR_2g008310 29.661 354 199 13 11 327 1 341 2.76e-28 113
MsG0580028522.01.T01 MTR_7g056277 33.523 352 181 16 12 327 259 593 4.16e-28 115
MsG0580028522.01.T01 MTR_3g023630 30.286 350 196 11 12 327 8 343 7.29e-28 112
MsG0580028522.01.T01 MTR_5g031970 29.446 343 188 8 7 327 11 321 8.22e-28 111
MsG0580028522.01.T01 MTR_7g056287 32.955 352 183 15 12 327 3 337 1.95e-27 110
MsG0580028522.01.T01 MTR_3g071790 34.759 187 102 5 154 323 19 202 2.92e-27 106
MsG0580028522.01.T01 MTR_2g005990 29.288 379 194 15 8 327 2 365 3.95e-27 110
MsG0580028522.01.T01 MTR_3g105060 30.919 359 177 12 11 327 13 342 7.81e-27 109
MsG0580028522.01.T01 MTR_2g007500 29.240 342 190 12 6 309 8 335 6.54e-26 106
MsG0580028522.01.T01 MTR_5g063950 28.736 348 178 12 17 327 13 327 7.28e-26 106
MsG0580028522.01.T01 MTR_7g033990 35.751 193 115 5 140 327 161 349 2.03e-25 105
MsG0580028522.01.T01 MTR_7g060470 28.906 384 176 15 12 327 3 357 3.10e-25 105
MsG0580028522.01.T01 MTR_5g008950 28.902 346 200 10 14 327 1 332 3.93e-25 104
MsG0580028522.01.T01 MTR_2g008320 28.158 380 191 13 4 327 44 397 7.94e-25 104
MsG0580028522.01.T01 MTR_3g082890 27.614 373 196 12 12 327 97 452 8.65e-25 104
MsG0580028522.01.T01 MTR_7g007370 29.882 338 178 12 11 327 16 315 1.13e-24 102
MsG0580028522.01.T01 MTR_5g008920 30.641 359 206 14 1 327 1 348 3.70e-24 102
MsG0580028522.01.T01 MTR_7g021990 30.337 356 191 13 12 325 48 388 4.33e-24 102
MsG0580028522.01.T01 MTR_7g021950 30.337 356 191 12 12 325 48 388 7.93e-24 102
MsG0580028522.01.T01 MTR_1g059860 33.482 224 104 6 140 321 90 310 1.40e-23 99.4
MsG0580028522.01.T01 MTR_7g056020 30.523 344 211 10 12 338 16 348 1.45e-23 102
MsG0580028522.01.T01 MTR_7g114710 28.291 357 201 11 1 327 1 332 1.81e-23 99.8
MsG0580028522.01.T01 MTR_7g056420 29.859 355 177 16 12 327 9 330 3.79e-22 98.2
MsG0580028522.01.T01 MTR_7g056430 29.859 355 177 16 12 327 9 330 4.02e-22 98.2
MsG0580028522.01.T01 MTR_2g007090 28.875 329 153 12 9 327 7 264 9.47e-22 94.0
MsG0580028522.01.T01 MTR_7g022105 30.028 353 196 13 12 325 49 389 1.16e-21 95.5
MsG0580028522.01.T01 MTR_3g082890 25.610 410 194 12 12 327 17 409 1.82e-21 95.1
MsG0580028522.01.T01 MTR_5g065100 27.762 353 162 12 17 327 13 314 4.14e-21 94.0
MsG0580028522.01.T01 MTR_1g107385 33.663 202 111 7 143 327 198 393 5.32e-21 93.6
MsG0580028522.01.T01 MTR_7g032370 26.891 357 168 11 24 327 2 318 5.72e-21 92.8
MsG0580028522.01.T01 MTR_7g034110 29.641 334 169 12 11 320 10 301 9.86e-21 92.0
MsG0580028522.01.T01 MTR_3g026920 27.688 372 202 14 12 327 19 379 1.47e-20 92.0
MsG0580028522.01.T01 MTR_3g087260 33.796 216 121 6 137 338 224 431 1.92e-20 92.0
MsG0580028522.01.T01 MTR_3g087260 30.370 270 153 9 12 267 12 260 3.64e-14 73.6
MsG0580028522.01.T01 MTR_5g012840 33.333 195 85 6 140 328 131 286 2.81e-20 90.1
MsG0580028522.01.T01 MTR_4g098590 34.653 202 113 6 140 327 156 352 4.32e-20 90.5
MsG0580028522.01.T01 MTR_8g085430 28.267 375 140 13 1 327 1 294 7.66e-20 89.4
MsG0580028522.01.T01 MTR_7g075800 30.396 227 116 8 139 328 173 394 1.14e-19 90.5
MsG0580028522.01.T01 MTR_7g032380 30.918 207 106 7 129 327 145 322 3.27e-19 87.8
MsG0580028522.01.T01 MTR_4g080610 27.221 349 200 11 14 338 14 332 3.43e-19 87.8
MsG0580028522.01.T01 MTR_5g024060 44.444 99 52 2 233 328 79 177 4.84e-19 85.5
MsG0580028522.01.T01 MTR_3g109982 33.077 260 138 11 92 338 213 449 4.93e-19 88.6
MsG0580028522.01.T01 MTR_7g034115 32.857 210 109 11 138 327 152 349 1.56e-18 85.9
MsG0580028522.01.T01 MTR_3g095640 44.231 104 39 1 3 106 9 93 1.74e-18 82.0
MsG0580028522.01.T01 MTR_3g108560 32.180 289 158 11 12 273 20 297 3.88e-18 84.0
MsG0580028522.01.T01 MTR_3g467400 32.292 192 104 6 140 327 163 332 7.93e-18 84.0
MsG0580028522.01.T01 MTR_6g022390 39.416 137 58 3 11 147 4 115 9.41e-18 79.3
MsG0580028522.01.T01 MTR_2g007550 26.453 344 185 11 8 327 10 309 2.44e-17 82.0
MsG0580028522.01.T01 MTR_0571s0010 45.833 96 30 2 12 107 32 105 6.49e-17 75.9
MsG0580028522.01.T01 MTR_8g062080 25.558 403 206 15 8 327 19 410 2.33e-16 80.1
MsG0580028522.01.T01 MTR_5g013500 29.469 207 126 7 141 327 124 330 6.82e-16 78.2
MsG0580028522.01.T01 MTR_7g007080 31.527 203 119 8 140 327 154 351 2.92e-15 76.6
MsG0580028522.01.T01 MTR_7g056280 31.667 180 104 6 165 327 367 544 4.94e-15 76.3
MsG0580028522.01.T01 MTR_7g056447 34.444 180 97 7 12 173 9 185 9.76e-14 71.2
MsG0580028522.01.T01 MTR_8g062270 27.119 413 200 17 11 327 15 422 1.18e-13 72.0
MsG0580028522.01.T01 MTR_6g029350 32.609 184 86 8 165 327 2 168 1.20e-12 67.0
MsG0580028522.01.T01 MTR_3g114200 52.239 67 25 2 2 63 4 68 5.46e-12 63.5
MsG0580028522.01.T01 MTR_6g022410 58.000 50 21 0 278 327 23 72 1.10e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028522.01.T01 AT5G56820 26.486 370 214 11 12 324 15 383 1.42e-16 80.9
MsG0580028522.01.T01 AT3G59210 27.739 429 195 18 12 333 7 427 4.44e-15 76.3
MsG0580028522.01.T01 AT3G59210 27.739 429 195 18 12 333 7 427 4.44e-15 76.3
MsG0580028522.01.T01 AT3G59210 27.739 429 195 18 12 333 7 427 4.44e-15 76.3
MsG0580028522.01.T01 AT3G59210 27.739 429 195 18 12 333 7 427 4.44e-15 76.3
MsG0580028522.01.T01 AT3G59210 27.739 429 195 18 12 333 7 427 4.44e-15 76.3
MsG0580028522.01.T01 AT3G59250 26.567 335 149 13 9 269 4 315 1.61e-13 71.6
MsG0580028522.01.T01 AT4G13965 24.934 381 208 12 12 321 10 383 2.48e-12 67.8

Find 61 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTGTTCTTGTCCAAAT+TGG 0.220577 5:+81800095 MsG0580028522.01.T01:CDS
ATGCAAAGAATTTGAAGATT+TGG 0.224903 5:-81800309 None:intergenic
AAGATCAACATTCAAAATTT+CGG 0.281252 5:-81799926 None:intergenic
ACCTTTGAGATAGCATTAAA+AGG 0.301168 5:-81800147 None:intergenic
AACCTCGGCTCTAACCAATT+TGG 0.341961 5:-81800109 None:intergenic
TTATCATTTCTTCCTTGGTT+GGG 0.350806 5:+81800257 MsG0580028522.01.T01:CDS
ATCATTCCATCGCCATCTAT+TGG 0.353598 5:+81799655 MsG0580028522.01.T01:CDS
ATGCATTCAACAGATGGAAT+TGG 0.355625 5:-81800455 None:intergenic
TTTATCATTTCTTCCTTGGT+TGG 0.358570 5:+81800256 MsG0580028522.01.T01:CDS
CGTGAGGCTAAAAGTGTTGA+TGG 0.369231 5:-81799729 None:intergenic
AGAACTCAGCTCCCATTGAT+AGG 0.376647 5:+81799424 MsG0580028522.01.T01:CDS
CATCGCATTCTGCAAAATAT+AGG 0.396124 5:-81800546 None:intergenic
TCAAATTCTTTGCATGAGAA+AGG 0.403416 5:+81800317 MsG0580028522.01.T01:CDS
ACAGAGTAAGGCCCACCGTT+TGG 0.413329 5:-81799529 None:intergenic
TGCATTCAACAGATGGAATT+GGG 0.418145 5:-81800454 None:intergenic
TAAGTTACTAATCCTATCAA+TGG 0.428015 5:-81799436 None:intergenic
TTTACAGCTAGCTTCTCAAA+TGG 0.431218 5:+81800592 MsG0580028522.01.T01:CDS
CGATGGAATGATCGTCATCC+AGG 0.470229 5:-81799644 None:intergenic
ATGTGACAAATTAACTCATC+AGG 0.472302 5:-81799459 None:intergenic
CTCAGCTTCTTGTTCGACGA+TGG 0.474092 5:+81799567 MsG0580028522.01.T01:CDS
AAAATGACAGAACCAATAGA+TGG 0.474288 5:-81799667 None:intergenic
TAGCGAAAGCTTGTCGAGTC+GGG 0.475677 5:-81799494 None:intergenic
GTATGCAATTCCTCTAGAAT+AGG 0.478451 5:-81800027 None:intergenic
AACGAACAAATCTCAAATGT+AGG 0.480549 5:-81799963 None:intergenic
CACTGGAATGCTTGTCAAAG+TGG 0.504663 5:-81800202 None:intergenic
TAATCAACGCTTTCATGCAT+GGG 0.508743 5:+81799778 MsG0580028522.01.T01:CDS
AATTGCATACTTCTCATCCT+AGG 0.509478 5:+81800040 MsG0580028522.01.T01:CDS
ATAATCAACGCTTTCATGCA+TGG 0.513368 5:+81799777 MsG0580028522.01.T01:CDS
GGAGAGTGAATAACAGAGTA+AGG 0.515752 5:-81799541 None:intergenic
CCACCGTTTGGAAAGACGCT+TGG 0.528131 5:-81799517 None:intergenic
CTACCAAGCGTCTTTCCAAA+CGG 0.534794 5:+81799514 MsG0580028522.01.T01:CDS
AAGTTACTAATCCTATCAAT+GGG 0.534962 5:-81799435 None:intergenic
GATGGATTGTTTATCACAGA+AGG 0.540810 5:-81799711 None:intergenic
GACGAAATGCATTCAACAGA+TGG 0.541539 5:-81800461 None:intergenic
GCATTAAAAGGAACATCGAC+TGG 0.541692 5:-81800135 None:intergenic
TGGTTCCATCGTCATCGTCT+TGG 0.542440 5:-81799596 None:intergenic
TCCATCGTCATCGTCTTGGA+CGG 0.547846 5:-81799592 None:intergenic
CGGTTTCATCGTCATCGTCT+AGG 0.554424 5:-81799620 None:intergenic
TTCATCGTCATCGTCTAGGA+TGG 0.556153 5:-81799616 None:intergenic
CGATGACGATGAAACCGTCC+TGG 0.561200 5:+81799626 MsG0580028522.01.T01:CDS
ACGAACAAATCTCAAATGTA+GGG 0.565632 5:-81799962 None:intergenic
TAATGCTTGTCCTATTCTAG+AGG 0.567076 5:+81800017 MsG0580028522.01.T01:CDS
TTCTGAAACAAACATGTCAT+CGG 0.570019 5:+81799395 None:intergenic
GTAGCGAAAGCTTGTCGAGT+CGG 0.574564 5:-81799495 None:intergenic
TAGGTATGTTGAAAATAATG+AGG 0.587443 5:+81800059 MsG0580028522.01.T01:CDS
AACCAATTTGGACAAGAACA+AGG 0.588578 5:-81800097 None:intergenic
TCACAGAAGGCGAAAGCAAG+AGG 0.598772 5:-81799698 None:intergenic
GTCCAAATTGGTTAGAGCCG+AGG 0.598804 5:+81800107 MsG0580028522.01.T01:CDS
ACAGAACCAATAGATGGCGA+TGG 0.611849 5:-81799661 None:intergenic
CAAGCGTCTTTCCAAACGGT+GGG 0.619052 5:+81799518 MsG0580028522.01.T01:CDS
GGAATGATCGTCATCCAGGA+CGG 0.620495 5:-81799640 None:intergenic
TTAAAAGAGTACATGATCTG+AGG 0.630142 5:-81800487 None:intergenic
GTCGAACAAGAAGCTGAGAA+CGG 0.631187 5:-81799562 None:intergenic
AAATTGGTTAGAGCCGAGGT+TGG 0.632307 5:+81800111 MsG0580028522.01.T01:CDS
CACAGAAGGCGAAAGCAAGA+GGG 0.633599 5:-81799697 None:intergenic
AACATCGACTGGACCAACCT+CGG 0.642945 5:-81800124 None:intergenic
CCAAGCGTCTTTCCAAACGG+TGG 0.665043 5:+81799517 MsG0580028522.01.T01:CDS
AAGATCTAGAAATAAACGTG+AGG 0.666684 5:-81799745 None:intergenic
ACCGTCCAAGACGATGACGA+TGG 0.669533 5:+81799591 MsG0580028522.01.T01:CDS
GTATGTTGAAAATAATGAGG+CGG 0.669832 5:+81800062 MsG0580028522.01.T01:CDS
CTATCACACTATCCCAACCA+AGG 0.671976 5:-81800269 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATCAACATTCAAAATTT+CGG - Chr5:81799929-81799948 None:intergenic 20.0%
! AAGTTACTAATCCTATCAAT+GGG - Chr5:81799438-81799457 None:intergenic 25.0%
! ATGCAAAGAATTTGAAGATT+TGG - Chr5:81800312-81800331 None:intergenic 25.0%
! TAAGTTACTAATCCTATCAA+TGG - Chr5:81799439-81799458 None:intergenic 25.0%
! TAGGTATGTTGAAAATAATG+AGG + Chr5:81800059-81800078 MsG0580028522.01.T01:CDS 25.0%
!! TCATTATTTTCAACATACCT+AGG - Chr5:81800060-81800079 None:intergenic 25.0%
!! TGTACTCTTTTAAACTTTGA+TGG + Chr5:81800497-81800516 MsG0580028522.01.T01:CDS 25.0%
!!! TGAATTAAGTTTTGAAACAC+TGG - Chr5:81800222-81800241 None:intergenic 25.0%
!!! TTGTTTTATCATTTCTTCCT+TGG + Chr5:81800252-81800271 MsG0580028522.01.T01:CDS 25.0%
!!! TTTCCATTTTTTCGATAATC+TGG - Chr5:81800432-81800451 None:intergenic 25.0%
AAAATGACAGAACCAATAGA+TGG - Chr5:81799670-81799689 None:intergenic 30.0%
AACGAACAAATCTCAAATGT+AGG - Chr5:81799966-81799985 None:intergenic 30.0%
AAGATCTAGAAATAAACGTG+AGG - Chr5:81799748-81799767 None:intergenic 30.0%
ACGAACAAATCTCAAATGTA+GGG - Chr5:81799965-81799984 None:intergenic 30.0%
ATGTGACAAATTAACTCATC+AGG - Chr5:81799462-81799481 None:intergenic 30.0%
GTACCAGATTATCGAAAAAA+TGG + Chr5:81800426-81800445 MsG0580028522.01.T01:CDS 30.0%
GTATGTTGAAAATAATGAGG+CGG + Chr5:81800062-81800081 MsG0580028522.01.T01:CDS 30.0%
TCAAATTCTTTGCATGAGAA+AGG + Chr5:81800317-81800336 MsG0580028522.01.T01:CDS 30.0%
TTATCATTTCTTCCTTGGTT+GGG + Chr5:81800257-81800276 MsG0580028522.01.T01:CDS 30.0%
TTTATCATTTCTTCCTTGGT+TGG + Chr5:81800256-81800275 MsG0580028522.01.T01:CDS 30.0%
! TCCTTTTAATGCTATCTCAA+AGG + Chr5:81800146-81800165 MsG0580028522.01.T01:CDS 30.0%
! TTAAAAGAGTACATGATCTG+AGG - Chr5:81800490-81800509 None:intergenic 30.0%
!! ACCTTTGAGATAGCATTAAA+AGG - Chr5:81800150-81800169 None:intergenic 30.0%
AACCAATTTGGACAAGAACA+AGG - Chr5:81800100-81800119 None:intergenic 35.0%
AACCTTGTTCTTGTCCAAAT+TGG + Chr5:81800095-81800114 MsG0580028522.01.T01:CDS 35.0%
AATTGCATACTTCTCATCCT+AGG + Chr5:81800040-81800059 MsG0580028522.01.T01:CDS 35.0%
ATAATCAACGCTTTCATGCA+TGG + Chr5:81799777-81799796 MsG0580028522.01.T01:CDS 35.0%
ATGCATTCAACAGATGGAAT+TGG - Chr5:81800458-81800477 None:intergenic 35.0%
CATCGCATTCTGCAAAATAT+AGG - Chr5:81800549-81800568 None:intergenic 35.0%
CTCAAGTTTCAGAACAACTA+GGG - Chr5:81799890-81799909 None:intergenic 35.0%
TAATCAACGCTTTCATGCAT+GGG + Chr5:81799778-81799797 MsG0580028522.01.T01:CDS 35.0%
TAATGCTTGTCCTATTCTAG+AGG + Chr5:81800017-81800036 MsG0580028522.01.T01:CDS 35.0%
TCTCAAGTTTCAGAACAACT+AGG - Chr5:81799891-81799910 None:intergenic 35.0%
TGCATTCAACAGATGGAATT+GGG - Chr5:81800457-81800476 None:intergenic 35.0%
! ATCTCAAATGTAGGGTTTTG+AGG - Chr5:81799957-81799976 None:intergenic 35.0%
! ATTCTTTGTCCTTTTGACAG+TGG + Chr5:81800402-81800421 MsG0580028522.01.T01:intron 35.0%
! TTTACAGCTAGCTTCTCAAA+TGG + Chr5:81800592-81800611 MsG0580028522.01.T01:CDS 35.0%
!! GATGGATTGTTTATCACAGA+AGG - Chr5:81799714-81799733 None:intergenic 35.0%
!! GTATGCAATTCCTCTAGAAT+AGG - Chr5:81800030-81800049 None:intergenic 35.0%
!! TCTCAAATGTAGGGTTTTGA+GGG - Chr5:81799956-81799975 None:intergenic 35.0%
ATCATTCCATCGCCATCTAT+TGG + Chr5:81799655-81799674 MsG0580028522.01.T01:CDS 40.0%
CTTGACATGACGTTGTTTAG+CGG - Chr5:81799810-81799829 None:intergenic 40.0%
GACGAAATGCATTCAACAGA+TGG - Chr5:81800464-81800483 None:intergenic 40.0%
GCATTAAAAGGAACATCGAC+TGG - Chr5:81800138-81800157 None:intergenic 40.0%
GGAGAGTGAATAACAGAGTA+AGG - Chr5:81799544-81799563 None:intergenic 40.0%
GGTTGAGAGGTGAAAATAGT+GGG - Chr5:81799869-81799888 None:intergenic 40.0%
! GGTGAAAATAGTGGGATTCA+AGG - Chr5:81799861-81799880 None:intergenic 40.0%
!!! AAATGTAGGGTTTTGAGGGA+TGG - Chr5:81799952-81799971 None:intergenic 40.0%
AAATTGGTTAGAGCCGAGGT+TGG + Chr5:81800111-81800130 MsG0580028522.01.T01:CDS 45.0%
ACAGAACCAATAGATGGCGA+TGG - Chr5:81799664-81799683 None:intergenic 45.0%
AGAACTCAGCTCCCATTGAT+AGG + Chr5:81799424-81799443 MsG0580028522.01.T01:CDS 45.0%
CACTGGAATGCTTGTCAAAG+TGG - Chr5:81800205-81800224 None:intergenic 45.0%
CGCTAAACAACGTCATGTCA+AGG + Chr5:81799808-81799827 MsG0580028522.01.T01:intron 45.0%
CTACCAAGCGTCTTTCCAAA+CGG + Chr5:81799514-81799533 MsG0580028522.01.T01:CDS 45.0%
CTATCACACTATCCCAACCA+AGG - Chr5:81800272-81800291 None:intergenic 45.0%
GGGTTGAGAGGTGAAAATAG+TGG - Chr5:81799870-81799889 None:intergenic 45.0%
GTCGAACAAGAAGCTGAGAA+CGG - Chr5:81799565-81799584 None:intergenic 45.0%
TCAGAACAACTAGGGTTGAG+AGG - Chr5:81799882-81799901 None:intergenic 45.0%
TCTGGTACTCCACTGTCAAA+AGG - Chr5:81800414-81800433 None:intergenic 45.0%
TTCATCGTCATCGTCTAGGA+TGG - Chr5:81799619-81799638 None:intergenic 45.0%
! AACCTCGGCTCTAACCAATT+TGG - Chr5:81800112-81800131 None:intergenic 45.0%
!! CGTGAGGCTAAAAGTGTTGA+TGG - Chr5:81799732-81799751 None:intergenic 45.0%
CAAGCGTCTTTCCAAACGGT+GGG + Chr5:81799518-81799537 MsG0580028522.01.T01:CDS 50.0%
CACAGAAGGCGAAAGCAAGA+GGG - Chr5:81799700-81799719 None:intergenic 50.0%
CGATGGAATGATCGTCATCC+AGG - Chr5:81799647-81799666 None:intergenic 50.0%
CGGTTTCATCGTCATCGTCT+AGG - Chr5:81799623-81799642 None:intergenic 50.0%
CTCAGCTTCTTGTTCGACGA+TGG + Chr5:81799567-81799586 MsG0580028522.01.T01:CDS 50.0%
GGAATGATCGTCATCCAGGA+CGG - Chr5:81799643-81799662 None:intergenic 50.0%
GTAGCGAAAGCTTGTCGAGT+CGG - Chr5:81799498-81799517 None:intergenic 50.0%
GTCCAAATTGGTTAGAGCCG+AGG + Chr5:81800107-81800126 MsG0580028522.01.T01:CDS 50.0%
TAGCGAAAGCTTGTCGAGTC+GGG - Chr5:81799497-81799516 None:intergenic 50.0%
TCACAGAAGGCGAAAGCAAG+AGG - Chr5:81799701-81799720 None:intergenic 50.0%
TCCATCGTCATCGTCTTGGA+CGG - Chr5:81799595-81799614 None:intergenic 50.0%
TGGTTCCATCGTCATCGTCT+TGG - Chr5:81799599-81799618 None:intergenic 50.0%
! AACATCGACTGGACCAACCT+CGG - Chr5:81800127-81800146 None:intergenic 50.0%
ACAGAGTAAGGCCCACCGTT+TGG - Chr5:81799532-81799551 None:intergenic 55.0%
ACCGTCCAAGACGATGACGA+TGG + Chr5:81799591-81799610 MsG0580028522.01.T01:CDS 55.0%
CCAAGCGTCTTTCCAAACGG+TGG + Chr5:81799517-81799536 MsG0580028522.01.T01:CDS 55.0%
CCACCGTTTGGAAAGACGCT+TGG - Chr5:81799520-81799539 None:intergenic 55.0%
CGATGACGATGAAACCGTCC+TGG + Chr5:81799626-81799645 MsG0580028522.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 81799408 81800619 81799408 ID=MsG0580028522.01;Name=MsG0580028522.01
Chr5 mRNA 81799408 81800619 81799408 ID=MsG0580028522.01.T01;Parent=MsG0580028522.01;Name=MsG0580028522.01.T01;_AED=0.11;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|338
Chr5 exon 81799408 81799799 81799408 ID=MsG0580028522.01.T01:exon:32998;Parent=MsG0580028522.01.T01
Chr5 exon 81799912 81800338 81799912 ID=MsG0580028522.01.T01:exon:32999;Parent=MsG0580028522.01.T01
Chr5 exon 81800422 81800619 81800422 ID=MsG0580028522.01.T01:exon:33000;Parent=MsG0580028522.01.T01
Chr5 CDS 81799408 81799799 81799408 ID=MsG0580028522.01.T01:cds;Parent=MsG0580028522.01.T01
Chr5 CDS 81799912 81800338 81799912 ID=MsG0580028522.01.T01:cds;Parent=MsG0580028522.01.T01
Chr5 CDS 81800422 81800619 81800422 ID=MsG0580028522.01.T01:cds;Parent=MsG0580028522.01.T01
Gene Sequence

>MsG0580028522.01.T01

ATGTCATCGGAAATTGAGAACTCAGCTCCCATTGATAGGATTAGTAACTTACCTGATGAGTTAATTTGTCACATTCTCTCTTTTCTCCCGACTCGACAAGCTTTCGCTACCAAGCGTCTTTCCAAACGGTGGGCCTTACTCTGTTATTCACTCTCCGTTCTCAGCTTCTTGTTCGACGATGGAACCGTCCAAGACGATGACGATGGAACCATCCTAGACGATGACGATGAAACCGTCCTGGATGACGATCATTCCATCGCCATCTATTGGTTCTGTCATTTTGTAGATACCCTCTTGCTTTCGCCTTCTGTGATAAACAATCCATCAACACTTTTAGCCTCACGTTTATTTCTAGATCTTATGACGTTGATAATCAACGCTTTCATGCATGGATTAAAAGTTGAAGCCGAAATTTTGAATGTTGATCTTCCATCCCTCAAAACCCTACATTTGAGATTTGTTCGTTTTCAAAATAAGAATGATTTCATGAAACTTCTTAATGCTTGTCCTATTCTAGAGGAATTGCATACTTCTCATCCTAGGTATGTTGAAAATAATGAGGCGGAAGAGTTTAAAACCTTGTTCTTGTCCAAATTGGTTAGAGCCGAGGTTGGTCCAGTCGATGTTCCTTTTAATGCTATCTCAAAGGTCGAGTTTCTACGCATAGACTATGCACAAAAAACCACTTTGACAAGCATTCCAGTGTTTCAAAACTTAATTCACGTTGAACTTTTGTTTTATCATTTCTTCCTTGGTTGGGATAGTGTGATAGAATTGCTGCAGCATTGTCCAAATCTTCAAATTCTTTGCATGAGAAAGTGGAGTACCAGATTATCGAAAAAATGGAAAAGCCCAATTCCATCTGTTGAATGCATTTCGTCTCACCTCAGATCATGTACTCTTTTAAACTTTGATGGCTCTGAAAATGATCTTCGATTTGCAACCTATATTTTGCAGAATGCGATGCTTTTAGAAGCGATGAAATCAATTTTACAGCTAGCTTCTCAAATGGAGTGA
Protein sequence

>MsG0580028522.01.T01

MSSEIENSAPIDRISNLPDELICHILSFLPTRQAFATKRLSKRWALLCYSLSVLSFLFDDGTVQDDDDGTILDDDDETVLDDDHSIAIYWFCHFVDTLLLSPSVINNPSTLLASRLFLDLMTLIINAFMHGLKVEAEILNVDLPSLKTLHLRFVRFQNKNDFMKLLNACPILEELHTSHPRYVENNEAEEFKTLFLSKLVRAEVGPVDVPFNAISKVEFLRIDYAQKTTLTSIPVFQNLIHVELLFYHFFLGWDSVIELLQHCPNLQILCMRKWSTRLSKKWKSPIPSVECISSHLRSCTLLNFDGSENDLRFATYILQNAMLLEAMKSILQLASQME*