AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004709.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004709.01.T01 MTR_1g085120 88.953 344 21 1 29 355 205 548 0.0 616
MsG0180004709.01.T01 MTR_1g085120 88.953 344 21 1 29 355 130 473 0.0 614
MsG0180004709.01.T01 MTR_1g085120 95.745 235 10 0 29 263 217 451 7.08e-164 466
MsG0180004709.01.T01 MTR_6g011460 57.759 348 118 5 29 355 84 423 2.59e-124 364
MsG0180004709.01.T01 MTR_6g022500 53.488 344 139 2 28 354 138 477 1.17e-118 352
MsG0180004709.01.T01 MTR_4g039440 55.429 350 128 6 28 355 71 414 6.73e-117 345
MsG0180004709.01.T01 MTR_6g022520 59.937 317 107 3 57 355 1 315 1.51e-116 340
MsG0180004709.01.T01 MTR_7g055943 49.575 353 147 6 28 355 77 423 6.15e-102 307
MsG0180004709.01.T01 MTR_6g022360 52.160 324 131 4 49 352 88 407 2.00e-98 298
MsG0180004709.01.T01 MTR_1g066830 48.864 352 143 9 28 352 45 386 3.38e-95 288
MsG0180004709.01.T01 MTR_1089s0010 48.711 349 146 8 28 355 45 381 2.11e-92 281
MsG0180004709.01.T01 MTR_5g058000 48.246 342 148 6 28 352 45 374 2.90e-85 263
MsG0180004709.01.T01 MTR_6g044572 43.915 378 134 12 28 354 39 389 5.95e-81 252
MsG0180004709.01.T01 MTR_5g058100 45.714 350 159 9 28 355 46 386 6.75e-80 249
MsG0180004709.01.T01 MTR_6g044560 43.915 378 134 12 28 354 215 565 6.36e-79 252
MsG0180004709.01.T01 MTR_6g040270 45.217 345 162 6 28 353 45 381 1.11e-78 246
MsG0180004709.01.T01 MTR_5g073420 43.429 350 157 10 28 353 48 380 3.25e-76 240
MsG0180004709.01.T01 MTR_3g095600 39.748 317 122 7 29 344 44 292 8.08e-59 192
MsG0180004709.01.T01 MTR_1g108820 38.920 352 176 12 28 351 44 384 3.86e-51 175
MsG0180004709.01.T01 MTR_7g026500 34.807 362 181 10 28 352 51 394 9.62e-51 174
MsG0180004709.01.T01 MTR_5g045510 34.431 334 199 6 28 352 49 371 3.35e-49 169
MsG0180004709.01.T01 MTR_6g045333 36.070 341 179 10 42 352 114 445 8.84e-48 167
MsG0180004709.01.T01 MTR_0009s0080 35.860 343 189 7 28 345 55 391 4.54e-47 165
MsG0180004709.01.T01 MTR_1g108800 39.677 310 150 10 63 351 47 340 3.59e-46 160
MsG0180004709.01.T01 MTR_3g071850 35.329 334 181 10 44 349 79 405 3.05e-45 166
MsG0180004709.01.T01 MTR_5g007410 33.429 347 203 7 28 350 63 405 1.88e-44 159
MsG0180004709.01.T01 MTR_5g076150 44.749 219 84 6 100 284 11 226 4.76e-44 152
MsG0180004709.01.T01 MTR_5g073370 34.367 387 196 14 9 355 14 382 2.75e-41 149
MsG0180004709.01.T01 MTR_5g039490 33.036 336 197 8 28 352 57 375 4.90e-41 148
MsG0180004709.01.T01 MTR_5g045170 33.929 336 182 11 47 352 65 390 2.64e-40 146
MsG0180004709.01.T01 MTR_2g036470 32.861 353 199 9 29 352 52 395 9.39e-40 145
MsG0180004709.01.T01 MTR_5g039470 34.084 311 178 7 28 316 22 327 1.53e-37 137
MsG0180004709.01.T01 MTR_7g056277 34.294 347 183 10 33 353 301 628 2.02e-37 142
MsG0180004709.01.T01 MTR_7g056287 33.333 345 189 10 33 353 45 372 6.59e-36 134
MsG0180004709.01.T01 MTR_5g033200 48.810 168 61 5 197 344 11 173 1.20e-35 128
MsG0180004709.01.T01 MTR_5g061680 35.786 299 136 11 10 288 32 294 2.01e-35 132
MsG0180004709.01.T01 MTR_6g033095 43.868 212 71 6 123 332 32 197 5.23e-35 127
MsG0180004709.01.T01 MTR_5g039450 31.594 345 182 9 28 350 43 355 6.53e-35 131
MsG0180004709.01.T01 MTR_7g088260 30.966 352 198 10 29 353 129 462 8.73e-35 133
MsG0180004709.01.T01 MTR_1g041245 30.854 363 190 14 28 353 48 386 2.95e-32 124
MsG0180004709.01.T01 MTR_5g031970 29.970 337 188 8 35 350 44 353 2.93e-31 121
MsG0180004709.01.T01 MTR_0543s0010 29.971 347 199 9 29 352 124 449 1.03e-30 121
MsG0180004709.01.T01 MTR_1g108820 38.306 248 131 9 28 263 44 281 1.50e-30 119
MsG0180004709.01.T01 MTR_5g054920 37.297 185 81 4 163 323 7 180 9.48e-30 113
MsG0180004709.01.T01 MTR_7g075820 30.447 358 197 11 33 351 48 392 1.89e-29 117
MsG0180004709.01.T01 MTR_5g065100 31.003 329 196 10 29 352 46 348 1.91e-29 117
MsG0180004709.01.T01 MTR_1377s0010 48.148 135 49 3 207 324 1 131 7.44e-29 109
MsG0180004709.01.T01 MTR_7g032380 29.330 358 170 14 29 353 49 356 4.05e-28 112
MsG0180004709.01.T01 MTR_7g115270 27.297 370 201 12 29 350 50 399 1.46e-27 112
MsG0180004709.01.T01 MTR_7g034120 30.650 323 168 12 66 354 9 309 1.60e-27 110
MsG0180004709.01.T01 MTR_7g007080 31.889 323 168 12 62 351 74 377 2.39e-27 111
MsG0180004709.01.T01 MTR_5g063950 28.349 321 192 9 56 350 51 359 2.69e-27 110
MsG0180004709.01.T01 MTR_3g107100 33.333 360 191 15 32 353 50 398 3.08e-27 111
MsG0180004709.01.T01 MTR_5g008920 29.944 354 201 15 29 355 50 383 1.02e-26 109
MsG0180004709.01.T01 MTR_6g022410 57.778 90 38 0 264 353 18 107 1.03e-26 102
MsG0180004709.01.T01 MTR_3g087260 29.720 286 166 5 93 352 180 456 1.23e-26 110
MsG0180004709.01.T01 MTR_3g095630 41.040 173 75 5 192 344 11 176 1.35e-26 104
MsG0180004709.01.T01 MTR_7g098510 31.348 319 172 9 66 353 89 391 1.42e-26 109
MsG0180004709.01.T01 MTR_2g007400 28.571 357 194 15 40 351 61 401 1.79e-26 109
MsG0180004709.01.T01 MTR_7g056433 30.114 352 199 13 33 353 54 389 2.24e-25 105
MsG0180004709.01.T01 MTR_3g095640 49.587 121 54 4 28 141 55 175 3.16e-25 100
MsG0180004709.01.T01 MTR_0492s0020 29.114 316 180 9 29 321 124 418 3.39e-25 105
MsG0180004709.01.T01 MTR_3g107120 32.326 331 182 15 45 350 75 388 3.50e-25 105
MsG0180004709.01.T01 MTR_7g098570 30.584 291 165 8 86 348 107 388 5.00e-25 105
MsG0180004709.01.T01 MTR_3g108150 28.612 353 206 10 29 352 51 386 8.39e-25 104
MsG0180004709.01.T01 MTR_2g007450 27.671 365 192 12 44 351 69 418 1.06e-24 104
MsG0180004709.01.T01 MTR_7g032370 28.056 360 189 16 29 353 28 352 1.97e-24 102
MsG0180004709.01.T01 MTR_3g023630 30.172 348 195 12 29 350 46 371 2.18e-24 102
MsG0180004709.01.T01 MTR_2g005990 29.282 362 197 13 33 351 48 393 3.39e-24 102
MsG0180004709.01.T01 MTR_7g033915 27.078 373 218 14 4 352 22 364 3.68e-24 102
MsG0180004709.01.T01 MTR_3g109982 30.592 304 171 9 70 346 179 469 3.70e-24 104
MsG0180004709.01.T01 MTR_3g109982 36.242 149 84 4 29 174 51 191 6.14e-11 64.3
MsG0180004709.01.T01 MTR_5g083890 30.030 333 184 12 32 320 47 374 4.25e-24 103
MsG0180004709.01.T01 MTR_3g105060 28.909 339 210 12 29 353 52 373 6.21e-24 101
MsG0180004709.01.T01 MTR_1g107385 34.717 265 132 10 115 351 170 421 7.36e-24 102
MsG0180004709.01.T01 MTR_3g108560 29.630 351 196 12 31 352 60 388 8.23e-24 101
MsG0180004709.01.T01 MTR_3g467400 27.193 342 217 10 29 353 41 367 3.30e-23 99.4
MsG0180004709.01.T01 MTR_5g073340 33.471 242 123 10 78 289 67 300 3.16e-22 95.9
MsG0180004709.01.T01 MTR_3g036250 26.829 369 227 14 4 350 16 363 4.79e-22 96.3
MsG0180004709.01.T01 MTR_1g059860 30.104 289 139 10 82 315 33 313 7.10e-22 95.1
MsG0180004709.01.T01 MTR_5g013500 26.823 384 206 16 15 353 12 365 1.60e-21 94.7
MsG0180004709.01.T01 MTR_3g107160 28.453 362 200 11 29 355 48 385 2.54e-21 94.4
MsG0180004709.01.T01 MTR_5g058350 55.952 84 37 0 90 173 80 163 2.64e-21 90.1
MsG0180004709.01.T01 MTR_2g008310 28.696 345 207 13 32 353 43 371 2.76e-21 94.4
MsG0180004709.01.T01 MTR_7g056020 30.769 260 138 7 115 347 124 368 6.46e-21 94.4
MsG0180004709.01.T01 MTR_2g008320 27.586 348 213 13 32 353 93 427 2.07e-20 92.4
MsG0180004709.01.T01 MTR_1g053025 27.326 344 200 12 44 350 56 386 2.56e-20 91.7
MsG0180004709.01.T01 MTR_7g098480 29.781 319 173 9 66 352 89 388 2.80e-20 92.0
MsG0180004709.01.T01 MTR_3g099830 31.599 269 134 10 115 351 122 372 4.14e-20 90.9
MsG0180004709.01.T01 MTR_4g098590 28.727 275 163 8 86 331 95 365 1.17e-18 86.7
MsG0180004709.01.T01 MTR_7g114710 27.089 347 198 13 29 353 51 364 1.28e-18 86.3
MsG0180004709.01.T01 MTR_7g033990 25.627 359 213 12 28 354 48 384 1.40e-18 86.7
MsG0180004709.01.T01 MTR_5g008950 27.376 263 155 7 116 355 118 367 2.57e-18 85.5
MsG0180004709.01.T01 MTR_5g012840 25.989 354 171 13 29 353 27 318 5.87e-18 84.0
MsG0180004709.01.T01 MTR_5g073400 40.833 120 65 3 61 178 1 116 8.87e-18 79.3
MsG0180004709.01.T01 MTR_3g040700 23.934 305 192 11 29 312 81 366 7.17e-17 81.6
MsG0180004709.01.T01 MTR_5g061410 28.794 257 137 9 13 263 34 250 1.62e-16 79.0
MsG0180004709.01.T01 MTR_7g056420 25.419 358 183 13 29 347 47 359 1.70e-16 81.6
MsG0180004709.01.T01 MTR_3g071790 32.086 187 97 7 151 312 19 200 1.82e-16 77.4
MsG0180004709.01.T01 MTR_7g056430 25.419 358 183 13 29 347 47 359 2.12e-16 81.3
MsG0180004709.01.T01 MTR_2g007500 29.435 248 133 11 86 297 91 332 3.11e-16 79.0
MsG0180004709.01.T01 MTR_6g022390 50.000 72 33 2 44 114 65 134 6.88e-15 71.6
MsG0180004709.01.T01 MTR_5g024060 38.235 136 62 4 239 355 79 211 1.00e-14 73.6
MsG0180004709.01.T01 MTR_3g108560 32.159 227 125 10 31 250 60 264 1.03e-14 74.3
MsG0180004709.01.T01 MTR_8g085430 24.773 331 169 14 29 341 49 317 1.37e-13 71.2
MsG0180004709.01.T01 MTR_7g022105 30.081 246 147 5 115 338 169 411 2.72e-13 70.9
MsG0180004709.01.T01 MTR_7g060470 26.384 307 166 8 89 352 103 392 4.27e-13 70.1
MsG0180004709.01.T01 MTR_3g026920 27.302 315 147 14 86 350 120 402 1.18e-12 68.9
MsG0180004709.01.T01 MTR_3g110010 32.796 186 109 6 70 252 179 351 2.08e-12 68.9
MsG0180004709.01.T01 MTR_3g110010 36.242 149 84 4 29 174 51 191 9.44e-11 63.5
MsG0180004709.01.T01 MTR_5g044790 43.023 86 49 0 265 350 352 437 1.73e-11 65.5
MsG0180004709.01.T01 MTR_3g107140 33.505 194 107 10 1 182 9 192 3.80e-11 62.4
MsG0180004709.01.T01 MTR_4g096730 37.349 83 47 2 273 354 12 90 9.35e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 61 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGAAGCCTCTTGATTTC+TGG 0.142604 1:+81679994 None:intergenic
TCAATGGATGTTCTATTTAA+TGG 0.162287 1:-81680055 MsG0180004709.01.T01:CDS
TACTACTAATGGAATACTTT+TGG 0.233828 1:-81679580 MsG0180004709.01.T01:CDS
TTGTTGTTCTCAAACTTAAA+AGG 0.234763 1:-81680318 MsG0180004709.01.T01:CDS
TTAAAATAGTACATGATCTT+AGG 0.263253 1:+81679688 None:intergenic
AAAACACTAAATGCAAATAA+AGG 0.286481 1:+81680245 None:intergenic
GTCAAGGATTTCAACCCTTT+TGG 0.300069 1:+81680109 None:intergenic
GTAATCACTCATTTCATTGC+TGG 0.340119 1:-81679922 MsG0180004709.01.T01:CDS
ACAATCGAAGTTACTACTAA+TGG 0.340278 1:-81679591 MsG0180004709.01.T01:CDS
ACTTGGGCATTTCCATTCCT+TGG 0.354987 1:+81679737 None:intergenic
AGATCAATATGAATTAAGTT+TGG 0.358056 1:+81679953 None:intergenic
GTGGTAAAAGCGAGTTTGAT+TGG 0.369267 1:+81680647 None:intergenic
GTAAATTTAATGTAACAAAA+TGG 0.381524 1:-81680432 MsG0180004709.01.T01:CDS
ACGGAGAACCAAGAGTGAAT+AGG 0.384920 1:+81680600 None:intergenic
TTTCCATTCCTTGGATGAGC+TGG 0.390102 1:+81679746 None:intergenic
TGAAGGTTTGATCATTTAAA+CGG 0.392117 1:+81680581 None:intergenic
CGGAGAACCAAGAGTGAATA+GGG 0.394119 1:+81680601 None:intergenic
GTTGAGGAGAAATGCTTTGA+TGG 0.405125 1:+81680483 None:intergenic
AGCCTCTTGATTTCTGGATT+CGG 0.405345 1:+81680000 None:intergenic
TTTGAGAACAACAAGGGATT+GGG 0.414601 1:+81680327 None:intergenic
TTACATGTTGTAGATATTCT+CGG 0.415371 1:+81679522 None:intergenic
GTTTGAGAACAACAAGGGAT+TGG 0.415400 1:+81680326 None:intergenic
AAACACTAAATGCAAATAAA+GGG 0.419480 1:+81680246 None:intergenic
TAATCACTCATTTCATTGCT+GGG 0.427022 1:-81679921 MsG0180004709.01.T01:CDS
ATGGGTTGGTTGGTTGTAAG+AGG 0.427719 1:+81680502 None:intergenic
TGGTAAAAGCGAGTTTGATT+GGG 0.450725 1:+81680648 None:intergenic
GAAGGCCTCATAGTCTTTGA+AGG 0.455276 1:+81680564 None:intergenic
ATTTAGCATGAAAATCTTCA+AGG 0.462118 1:+81680176 None:intergenic
ATACACTCAAGAACTGTACT+TGG 0.482113 1:+81679720 None:intergenic
TGCAAAACGGCGTCGTGTTG+AGG 0.482430 1:-81680401 MsG0180004709.01.T01:CDS
GATGAATACGATGCACCAAA+AGG 0.489088 1:-81680124 MsG0180004709.01.T01:CDS
CACTCATTTCATTGCTGGGA+TGG 0.489897 1:-81679917 MsG0180004709.01.T01:CDS
AAACTTAAAAGGTTAAATGT+TGG 0.492852 1:-81680307 MsG0180004709.01.T01:CDS
AAATGCTTTGATGGGTTGGT+TGG 0.497598 1:+81680492 None:intergenic
GGAGAAATGCTTTGATGGGT+TGG 0.504514 1:+81680488 None:intergenic
GCATGAAAATCTTCAAGGAT+AGG 0.504789 1:+81680181 None:intergenic
CGGTGGACCCTATTCACTCT+TGG 0.513480 1:-81680608 MsG0180004709.01.T01:CDS
CGCTCTGATCAATTTAGACA+AGG 0.519717 1:+81680087 None:intergenic
CTCTTGATTTCTGGATTCGG+TGG 0.528164 1:+81680003 None:intergenic
CAGAGCGAGAATCAGTTCAA+TGG 0.533513 1:-81680071 MsG0180004709.01.T01:CDS
GATTGGGAGATGAAAATAAC+GGG 0.542165 1:+81680343 None:intergenic
TGTTGTAGATATTCTCGGAC+AGG 0.547726 1:+81679527 None:intergenic
AAATAACGGGCTTTAAGTTG+TGG 0.548303 1:+81680356 None:intergenic
TCAAACCTTCAAAGACTATG+AGG 0.549353 1:-81680569 MsG0180004709.01.T01:CDS
GGTCCACCGCTTTGAAAGAA+CGG 0.564473 1:+81680622 None:intergenic
ATGAATACGATGCACCAAAA+GGG 0.566579 1:-81680123 MsG0180004709.01.T01:CDS
CCGCTTTGAAAGAACGGTTG+TGG 0.568428 1:+81680628 None:intergenic
AGACCAGCTCATCCAAGGAA+TGG 0.569200 1:-81679749 MsG0180004709.01.T01:CDS
CAACCGTTCTTTCAAAGCGG+TGG 0.572677 1:-81680625 MsG0180004709.01.T01:CDS
AATGGCTAGAAGTTGCAAAA+CGG 0.578696 1:-81680414 MsG0180004709.01.T01:CDS
GACGGAGACCAGCTCATCCA+AGG 0.584541 1:-81679754 MsG0180004709.01.T01:CDS
GGATTGGGAGATGAAAATAA+CGG 0.587759 1:+81680342 None:intergenic
TTGAGGAGAAATGCTTTGAT+GGG 0.588209 1:+81680484 None:intergenic
CACCGAATCCAGAAATCAAG+AGG 0.591638 1:-81680002 MsG0180004709.01.T01:CDS
ATTTCATTGCTGGGATGGTG+TGG 0.592327 1:-81679912 MsG0180004709.01.T01:intron
GATCAATTTAGACAAGGTCA+AGG 0.599779 1:+81680093 None:intergenic
TACACTCAAGAACTGTACTT+GGG 0.600300 1:+81679721 None:intergenic
TTTAAGTTTGAGAACAACAA+GGG 0.614315 1:+81680321 None:intergenic
CCACAACCGTTCTTTCAAAG+CGG 0.640802 1:-81680628 MsG0180004709.01.T01:CDS
GGTGTTTAATACAACAGTTG+AGG 0.665979 1:+81680467 None:intergenic
AGTTGTGGTAATATAATGTG+AGG 0.733410 1:+81680371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAATTTAATGTAACAAAA+TGG - Chr1:81679747-81679766 MsG0180004709.01.T01:CDS 15.0%
!! AAAACACTAAATGCAAATAA+AGG + Chr1:81679937-81679956 None:intergenic 20.0%
!! AAACACTAAATGCAAATAAA+GGG + Chr1:81679936-81679955 None:intergenic 20.0%
!! AAACTTAAAAGGTTAAATGT+TGG - Chr1:81679872-81679891 MsG0180004709.01.T01:intron 20.0%
!! AGATCAATATGAATTAAGTT+TGG + Chr1:81680229-81680248 None:intergenic 20.0%
!! TTAAAATAGTACATGATCTT+AGG + Chr1:81680494-81680513 None:intergenic 20.0%
!!! AGTGTTTTTTAAAAATCAGA+AGG - Chr1:81679949-81679968 MsG0180004709.01.T01:CDS 20.0%
!!! TAAATTTACTATTTTGTGCA+CGG + Chr1:81679736-81679755 None:intergenic 20.0%
!!! TAATGTTATTTTTATCCCTT+TGG - Chr1:81680397-81680416 MsG0180004709.01.T01:CDS 20.0%
!!! TGTACTATTTTAAACTTTGA+AGG - Chr1:81680501-81680520 MsG0180004709.01.T01:CDS 20.0%
! ATTTAGCATGAAAATCTTCA+AGG + Chr1:81680006-81680025 None:intergenic 25.0%
! TCAATGGATGTTCTATTTAA+TGG - Chr1:81680124-81680143 MsG0180004709.01.T01:CDS 25.0%
! TGAAGGTTTGATCATTTAAA+CGG + Chr1:81679601-81679620 None:intergenic 25.0%
! TTACATGTTGTAGATATTCT+CGG + Chr1:81680660-81680679 None:intergenic 25.0%
!! AATAGAAAGAATTTGAAGCT+TGG + Chr1:81680314-81680333 None:intergenic 25.0%
!! TACTACTAATGGAATACTTT+TGG - Chr1:81680599-81680618 MsG0180004709.01.T01:CDS 25.0%
!! TTGTTGTTCTCAAACTTAAA+AGG - Chr1:81679861-81679880 MsG0180004709.01.T01:intron 25.0%
!! TTTAAGTTTGAGAACAACAA+GGG + Chr1:81679861-81679880 None:intergenic 25.0%
!!! GAATACTTTTGGAAAAAAGT+CGG - Chr1:81680610-81680629 MsG0180004709.01.T01:CDS 25.0%
!!! TATTTTAAACTTTGAAGGCT+CGG - Chr1:81680506-81680525 MsG0180004709.01.T01:CDS 25.0%
!!! TTTTAAGTTTGAGAACAACA+AGG + Chr1:81679862-81679881 None:intergenic 25.0%
AAAACGAAAAAACTGGTAGA+AGG + Chr1:81679636-81679655 None:intergenic 30.0%
ACAATCGAAGTTACTACTAA+TGG - Chr1:81680588-81680607 MsG0180004709.01.T01:CDS 30.0%
AGTTGTGGTAATATAATGTG+AGG + Chr1:81679811-81679830 None:intergenic 30.0%
TAATCACTCATTTCATTGCT+GGG - Chr1:81680258-81680277 MsG0180004709.01.T01:CDS 30.0%
TATCCACAAAACGAAAAAAC+TGG + Chr1:81679643-81679662 None:intergenic 30.0%
AATGGCTAGAAGTTGCAAAA+CGG - Chr1:81679765-81679784 MsG0180004709.01.T01:intron 35.0%
ATACACTCAAGAACTGTACT+TGG + Chr1:81680462-81680481 None:intergenic 35.0%
ATGAATACGATGCACCAAAA+GGG - Chr1:81680056-81680075 MsG0180004709.01.T01:CDS 35.0%
GATCAATTTAGACAAGGTCA+AGG + Chr1:81680089-81680108 None:intergenic 35.0%
GATTGGGAGATGAAAATAAC+GGG + Chr1:81679839-81679858 None:intergenic 35.0%
GCATGAAAATCTTCAAGGAT+AGG + Chr1:81680001-81680020 None:intergenic 35.0%
GGATTGGGAGATGAAAATAA+CGG + Chr1:81679840-81679859 None:intergenic 35.0%
GGTGTTTAATACAACAGTTG+AGG + Chr1:81679715-81679734 None:intergenic 35.0%
GTAATCACTCATTTCATTGC+TGG - Chr1:81680257-81680276 MsG0180004709.01.T01:CDS 35.0%
TACACTCAAGAACTGTACTT+GGG + Chr1:81680461-81680480 None:intergenic 35.0%
TCAAACCTTCAAAGACTATG+AGG - Chr1:81679610-81679629 MsG0180004709.01.T01:CDS 35.0%
TGGTAAAAGCGAGTTTGATT+GGG + Chr1:81679534-81679553 None:intergenic 35.0%
TTGAGGAGAAATGCTTTGAT+GGG + Chr1:81679698-81679717 None:intergenic 35.0%
TTTGAGAACAACAAGGGATT+GGG + Chr1:81679855-81679874 None:intergenic 35.0%
! AAATAAAGGGTTTTCAGCGA+TGG + Chr1:81679923-81679942 None:intergenic 35.0%
!! AAATAACGGGCTTTAAGTTG+TGG + Chr1:81679826-81679845 None:intergenic 35.0%
!! TATTTTTATCCCTTTGGCAG+TGG - Chr1:81680403-81680422 MsG0180004709.01.T01:CDS 35.0%
!!! CTACCAGTTTTTTCGTTTTG+TGG - Chr1:81679637-81679656 MsG0180004709.01.T01:CDS 35.0%
CGCTCTGATCAATTTAGACA+AGG + Chr1:81680095-81680114 None:intergenic 40.0%
GAAAGAAGCCTCTTGATTTC+TGG + Chr1:81680188-81680207 None:intergenic 40.0%
GATGAATACGATGCACCAAA+AGG - Chr1:81680055-81680074 MsG0180004709.01.T01:CDS 40.0%
GTGGTAAAAGCGAGTTTGAT+TGG + Chr1:81679535-81679554 None:intergenic 40.0%
GTTGAGGAGAAATGCTTTGA+TGG + Chr1:81679699-81679718 None:intergenic 40.0%
GTTTGAGAACAACAAGGGAT+TGG + Chr1:81679856-81679875 None:intergenic 40.0%
TGTTGTAGATATTCTCGGAC+AGG + Chr1:81680655-81680674 None:intergenic 40.0%
! AGCCTCTTGATTTCTGGATT+CGG + Chr1:81680182-81680201 None:intergenic 40.0%
! GTCAAGGATTTCAACCCTTT+TGG + Chr1:81680073-81680092 None:intergenic 40.0%
! TTTGAAGCTTGGAACAACAG+CGG + Chr1:81680303-81680322 None:intergenic 40.0%
!! AAATGCTTTGATGGGTTGGT+TGG + Chr1:81679690-81679709 None:intergenic 40.0%
ACGGAGAACCAAGAGTGAAT+AGG + Chr1:81679582-81679601 None:intergenic 45.0%
ACTTGGGCATTTCCATTCCT+TGG + Chr1:81680445-81680464 None:intergenic 45.0%
ATTTCATTGCTGGGATGGTG+TGG - Chr1:81680267-81680286 MsG0180004709.01.T01:CDS 45.0%
CACCGAATCCAGAAATCAAG+AGG - Chr1:81680177-81680196 MsG0180004709.01.T01:CDS 45.0%
CACTCATTTCATTGCTGGGA+TGG - Chr1:81680262-81680281 MsG0180004709.01.T01:CDS 45.0%
CAGAGCGAGAATCAGTTCAA+TGG - Chr1:81680108-81680127 MsG0180004709.01.T01:CDS 45.0%
CCACAACCGTTCTTTCAAAG+CGG - Chr1:81679551-81679570 MsG0180004709.01.T01:CDS 45.0%
CGGAGAACCAAGAGTGAATA+GGG + Chr1:81679581-81679600 None:intergenic 45.0%
GAAGGCCTCATAGTCTTTGA+AGG + Chr1:81679618-81679637 None:intergenic 45.0%
TTTATCCCTTTGGCAGTGGA+CGG - Chr1:81680407-81680426 MsG0180004709.01.T01:CDS 45.0%
TTTCCATTCCTTGGATGAGC+TGG + Chr1:81680436-81680455 None:intergenic 45.0%
! CTCTTGATTTCTGGATTCGG+TGG + Chr1:81680179-81680198 None:intergenic 45.0%
! GGAGAAATGCTTTGATGGGT+TGG + Chr1:81679694-81679713 None:intergenic 45.0%
!! ATGGGTTGGTTGGTTGTAAG+AGG + Chr1:81679680-81679699 None:intergenic 45.0%
AGACCAGCTCATCCAAGGAA+TGG - Chr1:81680430-81680449 MsG0180004709.01.T01:CDS 50.0%
CAACCGTTCTTTCAAAGCGG+TGG - Chr1:81679554-81679573 MsG0180004709.01.T01:CDS 50.0%
!! CCGCTTTGAAAGAACGGTTG+TGG + Chr1:81679554-81679573 None:intergenic 50.0%
!! GGTCCACCGCTTTGAAAGAA+CGG + Chr1:81679560-81679579 None:intergenic 50.0%
CGGTGGACCCTATTCACTCT+TGG - Chr1:81679571-81679590 MsG0180004709.01.T01:CDS 55.0%
TGCAAAACGGCGTCGTGTTG+AGG - Chr1:81679778-81679797 MsG0180004709.01.T01:intron 55.0%
GACGGAGACCAGCTCATCCA+AGG - Chr1:81680425-81680444 MsG0180004709.01.T01:CDS 60.0%
GGTCTCCGTCCACTGCCAAA+GGG + Chr1:81680415-81680434 None:intergenic 60.0%
TGGTCTCCGTCCACTGCCAA+AGG + Chr1:81680416-81680435 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81679500 81680701 81679500 ID=MsG0180004709.01;Name=MsG0180004709.01
Chr1 mRNA 81679500 81680701 81679500 ID=MsG0180004709.01.T01;Parent=MsG0180004709.01;Name=MsG0180004709.01.T01;_AED=0.46;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|355
Chr1 exon 81679913 81680701 81679913 ID=MsG0180004709.01.T01:exon:34471;Parent=MsG0180004709.01.T01
Chr1 exon 81679500 81679778 81679500 ID=MsG0180004709.01.T01:exon:34470;Parent=MsG0180004709.01.T01
Chr1 CDS 81679913 81680701 81679913 ID=MsG0180004709.01.T01:cds;Parent=MsG0180004709.01.T01
Chr1 CDS 81679500 81679778 81679500 ID=MsG0180004709.01.T01:cds;Parent=MsG0180004709.01.T01
Gene Sequence

>MsG0180004709.01.T01

ATGAGTTATTGTGTTACATACTCTCTTTTCTCCCAATCAAACTCGCTTTTACCACAACCGTTCTTTCAAAGCGGTGGACCCTATTCACTCTTGGTTCTCCGTTTAAATGATCAAACCTTCAAAGACTATGAGGCCTTCTACCAGTTTTTTCGTTTTGTGGATACTCTCATGCTCTCTCCTCTTACAACCAACCAACCCATCAAAGCATTTCTCCTCAACTGTTGTATTAAACACCGTGCACAAAATAGTAAATTTAATGTAACAAAATGGCTAGAAGTTGCAAAACGGCGTCGTGTTGAGGAATTTCACCTCACATTATATTACCACAACTTAAAGCCCGTTATTTTCATCTCCCAATCCCTTGTTGTTCTCAAACTTAAAAGGTTAAATGTTGGAAATGATACTTCGTGTGTTGATCTTCCATCGCTGAAAACCCTTTATTTGCATTTAGTGTTTTTTAAAAATCAGAAGGATTACATTAATTTTCTTTCTGCTTGTCCTATCCTTGAAGATTTTCATGCTAAATCTATCTATATACATAGTGAGATGAATCATGATGAATACGATGCACCAAAAGGGTTGAAATCCTTGACCTTGTCTAAATTGATCAGAGCGAGAATCAGTTCAATGGATGTTCTATTTAATGGTATTAATAATGTTGAATTTCTACGTATAACCACCGAATCCAGAAATCAAGAGGCTTCTTTCAAAGTCATTCTAGTGTTTCCAAACTTAATTCATATTGATCTTGTGTTTTGTAATCACTCATTTCATTGCTGGGATGGTGTGTGGACGGAGACCAGCTCATCCAAGGAATGGAAATGCCCAAGTACAGTTCTTGAGTGTATTTCGTTGCACCTAAGATCATGTACTATTTTAAACTTTGAAGGCTCGGCAGATGATCTTCAATTCGCAAGATATATTTTGCGTAATGCAAGTCATTTACAAGACATGACAATCGAAGTTACTACTAATGGAATACTTTTGGAAAAAAGTCGGATCATAACAGAATTGTACTCCTGTCCGAGAATATCTACAACATGTAAACTTTCATTTGAATTTAAATAA
Protein sequence

>MsG0180004709.01.T01

MSYCVTYSLFSQSNSLLPQPFFQSGGPYSLLVLRLNDQTFKDYEAFYQFFRFVDTLMLSPLTTNQPIKAFLLNCCIKHRAQNSKFNVTKWLEVAKRRRVEEFHLTLYYHNLKPVIFISQSLVVLKLKRLNVGNDTSCVDLPSLKTLYLHLVFFKNQKDYINFLSACPILEDFHAKSIYIHSEMNHDEYDAPKGLKSLTLSKLIRARISSMDVLFNGINNVEFLRITTESRNQEASFKVILVFPNLIHIDLVFCNHSFHCWDGVWTETSSSKEWKCPSTVLECISLHLRSCTILNFEGSADDLQFARYILRNASHLQDMTIEVTTNGILLEKSRIITELYSCPRISTTCKLSFEFK*