AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025196.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025196.01.T01 MTR_5g007410 54.568 405 168 9 3 396 6 405 3.30e-134 392
MsG0580025196.01.T01 MTR_6g045333 54.902 408 168 8 3 399 44 446 7.64e-131 383
MsG0580025196.01.T01 MTR_5g045170 51.385 397 179 7 10 399 2 391 1.29e-121 358
MsG0580025196.01.T01 MTR_5g045510 53.927 382 147 8 23 398 13 371 1.69e-120 354
MsG0580025196.01.T01 MTR_3g071850 51.485 404 180 8 3 395 7 405 2.43e-113 351
MsG0580025196.01.T01 MTR_2g036470 50.374 401 168 14 17 399 9 396 8.53e-108 323
MsG0580025196.01.T01 MTR_0009s0080 48.525 373 178 8 5 369 1 367 1.44e-98 300
MsG0580025196.01.T01 MTR_5g039450 47.409 386 154 12 23 396 7 355 4.62e-98 296
MsG0580025196.01.T01 MTR_5g039490 47.783 406 158 14 12 398 5 375 8.76e-98 296
MsG0580025196.01.T01 MTR_5g031970 46.094 384 154 12 24 399 18 356 2.75e-90 276
MsG0580025196.01.T01 MTR_7g026500 42.439 410 204 12 1 396 1 392 5.19e-85 265
MsG0580025196.01.T01 MTR_5g024060 71.508 179 48 2 215 391 23 200 9.48e-85 259
MsG0580025196.01.T01 MTR_5g063950 42.078 385 186 9 21 398 7 361 4.83e-84 261
MsG0580025196.01.T01 MTR_1g066830 41.406 384 209 9 24 398 10 386 5.25e-84 261
MsG0580025196.01.T01 MTR_5g058100 42.416 389 194 13 24 398 11 383 9.86e-82 256
MsG0580025196.01.T01 MTR_5g039470 45.373 335 168 9 38 365 1 327 1.39e-81 253
MsG0580025196.01.T01 MTR_1089s0010 40.979 388 197 13 24 398 10 378 5.03e-77 243
MsG0580025196.01.T01 MTR_5g058000 41.388 389 199 10 21 398 4 374 2.82e-76 241
MsG0580025196.01.T01 MTR_6g040270 40.256 390 203 11 22 398 8 380 8.83e-75 238
MsG0580025196.01.T01 MTR_6g022500 39.433 388 217 9 19 398 98 475 1.06e-72 235
MsG0580025196.01.T01 MTR_4g039440 39.394 396 211 12 18 398 30 411 1.96e-72 233
MsG0580025196.01.T01 MTR_7g055943 40.204 393 203 12 24 398 42 420 2.45e-72 233
MsG0580025196.01.T01 MTR_1g108820 41.131 389 202 13 24 398 10 385 5.18e-71 228
MsG0580025196.01.T01 MTR_1g085120 39.747 395 210 10 19 398 89 470 1.67e-70 229
MsG0580025196.01.T01 MTR_1g085120 39.747 395 210 10 19 398 164 545 4.56e-70 230
MsG0580025196.01.T01 MTR_5g073420 37.662 385 208 13 24 396 13 377 2.23e-68 221
MsG0580025196.01.T01 MTR_5g065100 39.231 390 179 11 21 399 7 349 5.30e-67 219
MsG0580025196.01.T01 MTR_6g011460 38.619 391 216 10 19 398 43 420 2.48e-66 217
MsG0580025196.01.T01 MTR_1g108800 40.415 386 165 13 24 398 10 341 3.05e-65 212
MsG0580025196.01.T01 MTR_3g071790 56.650 203 85 2 163 363 1 202 3.02e-63 202
MsG0580025196.01.T01 MTR_5g073370 37.018 389 215 10 24 398 7 379 3.62e-62 205
MsG0580025196.01.T01 MTR_1g059860 39.773 352 134 11 87 398 8 321 8.26e-61 199
MsG0580025196.01.T01 MTR_6g044572 38.038 418 182 16 24 398 4 387 7.77e-59 197
MsG0580025196.01.T01 MTR_6g044560 38.038 418 182 16 24 398 180 563 1.15e-56 195
MsG0580025196.01.T01 MTR_5g073340 39.009 323 157 8 24 338 10 300 1.08e-55 186
MsG0580025196.01.T01 MTR_7g033915 33.858 381 219 8 24 399 13 365 5.75e-54 183
MsG0580025196.01.T01 MTR_6g022360 34.615 390 215 13 24 399 45 408 1.53e-52 180
MsG0580025196.01.T01 MTR_1g041245 35.930 398 207 16 24 398 13 385 1.63e-52 180
MsG0580025196.01.T01 MTR_7g033990 35.768 397 209 14 16 391 4 375 6.27e-51 176
MsG0580025196.01.T01 MTR_7g032380 34.115 384 197 11 27 398 16 355 7.32e-51 174
MsG0580025196.01.T01 MTR_7g115270 34.010 394 231 11 24 396 14 399 1.19e-50 175
MsG0580025196.01.T01 MTR_2g007450 33.958 427 231 14 14 399 4 420 1.30e-50 176
MsG0580025196.01.T01 MTR_0543s0010 36.181 398 221 13 14 399 74 450 2.28e-50 176
MsG0580025196.01.T01 MTR_5g061410 38.514 296 153 7 18 312 1 268 9.89e-50 169
MsG0580025196.01.T01 MTR_7g098510 35.250 400 224 13 14 396 7 388 1.11e-49 172
MsG0580025196.01.T01 MTR_7g056433 34.115 384 231 10 24 396 14 386 3.09e-49 171
MsG0580025196.01.T01 MTR_3g107100 33.995 403 220 14 24 398 13 397 1.09e-48 170
MsG0580025196.01.T01 MTR_1g053025 32.908 392 235 10 24 396 4 386 1.10e-48 170
MsG0580025196.01.T01 MTR_6g022520 38.509 322 180 7 85 398 1 312 2.40e-48 167
MsG0580025196.01.T01 MTR_5g024050 83.696 92 15 0 163 254 1 92 2.90e-48 159
MsG0580025196.01.T01 MTR_5g061680 35.535 318 163 9 24 336 13 293 2.67e-46 162
MsG0580025196.01.T01 MTR_3g107160 33.590 390 223 13 23 396 11 380 5.76e-46 162
MsG0580025196.01.T01 MTR_0492s0020 36.216 370 206 12 14 374 74 422 1.06e-45 163
MsG0580025196.01.T01 MTR_2g007400 32.067 421 232 16 12 398 2 402 1.74e-45 162
MsG0580025196.01.T01 MTR_7g098480 35.025 394 225 12 14 393 7 383 2.31e-45 163
MsG0580025196.01.T01 MTR_3g107120 32.598 408 214 14 24 398 11 390 3.99e-45 160
MsG0580025196.01.T01 MTR_1g108820 39.000 300 164 9 24 313 10 300 5.99e-45 159
MsG0580025196.01.T01 MTR_3g105060 34.043 376 224 11 24 396 16 370 8.18e-45 159
MsG0580025196.01.T01 MTR_3g099830 35.176 398 197 17 24 398 14 373 9.18e-45 159
MsG0580025196.01.T01 MTR_1g085120 37.705 305 166 8 19 311 176 468 4.46e-44 159
MsG0580025196.01.T01 MTR_7g098570 32.250 400 239 11 11 394 5 388 1.13e-43 159
MsG0580025196.01.T01 MTR_7g007080 34.250 400 211 17 24 398 6 378 1.04e-42 154
MsG0580025196.01.T01 MTR_3g108150 33.499 403 229 13 16 399 5 387 7.02e-42 152
MsG0580025196.01.T01 MTR_3g036250 32.552 384 221 9 24 396 7 363 1.27e-41 150
MsG0580025196.01.T01 MTR_7g032370 34.197 386 197 16 34 398 2 351 3.78e-41 149
MsG0580025196.01.T01 MTR_5g008950 31.266 387 227 13 24 396 1 362 4.82e-41 149
MsG0580025196.01.T01 MTR_7g075820 31.683 404 229 14 24 398 8 393 4.84e-41 149
MsG0580025196.01.T01 MTR_3g108560 33.592 387 227 11 24 399 22 389 6.03e-41 149
MsG0580025196.01.T01 MTR_5g008920 32.124 386 232 14 22 396 12 378 2.04e-40 147
MsG0580025196.01.T01 MTR_7g034115 32.732 388 216 15 24 391 13 375 2.77e-40 147
MsG0580025196.01.T01 MTR_5g054920 39.196 199 110 4 188 382 2 193 5.45e-39 138
MsG0580025196.01.T01 MTR_3g023630 33.075 387 232 12 18 396 4 371 8.19e-39 143
MsG0580025196.01.T01 MTR_7g088260 31.783 387 230 12 24 396 93 459 8.61e-39 145
MsG0580025196.01.T01 MTR_2g007360 29.877 405 209 14 24 398 14 373 9.74e-39 143
MsG0580025196.01.T01 MTR_1g107385 30.861 418 229 16 18 398 28 422 2.07e-38 143
MsG0580025196.01.T01 MTR_3g040700 31.025 361 213 10 12 362 33 367 8.29e-38 142
MsG0580025196.01.T01 MTR_7g034120 33.125 320 180 9 93 398 8 307 8.30e-38 139
MsG0580025196.01.T01 MTR_5g083890 31.852 405 215 16 24 388 8 391 1.30e-36 140
MsG0580025196.01.T01 MTR_4g098590 32.520 369 207 15 26 369 3 354 2.50e-36 136
MsG0580025196.01.T01 MTR_7g056420 31.105 389 221 12 18 393 5 359 3.21e-36 141
MsG0580025196.01.T01 MTR_7g056430 31.105 389 221 12 18 393 5 359 3.87e-36 141
MsG0580025196.01.T01 MTR_2g005990 31.387 411 222 13 24 398 8 394 7.06e-36 135
MsG0580025196.01.T01 MTR_2g008310 31.362 389 231 12 24 398 4 370 4.88e-35 133
MsG0580025196.01.T01 MTR_7g056447 44.068 177 97 2 24 200 11 185 5.26e-34 128
MsG0580025196.01.T01 MTR_7g083740 27.094 406 235 9 4 396 7 364 2.91e-33 128
MsG0580025196.01.T01 MTR_2g008320 30.025 393 237 12 24 398 54 426 3.10e-33 129
MsG0580025196.01.T01 MTR_3g467400 29.877 405 215 13 20 396 1 364 1.48e-31 123
MsG0580025196.01.T01 MTR_3g082890 30.049 406 228 14 24 396 99 481 1.79e-31 125
MsG0580025196.01.T01 MTR_7g114710 28.982 383 226 9 24 396 15 361 2.47e-31 122
MsG0580025196.01.T01 MTR_7g056287 29.923 391 230 11 24 396 5 369 5.91e-31 122
MsG0580025196.01.T01 MTR_7g007340 30.123 405 213 16 5 393 1 351 7.45e-31 121
MsG0580025196.01.T01 MTR_2g007500 32.194 351 188 15 15 341 3 327 1.57e-30 120
MsG0580025196.01.T01 MTR_7g056277 30.151 398 232 12 20 396 253 625 2.35e-30 123
MsG0580025196.01.T01 MTR_5g024040 86.885 61 8 0 1 61 1 61 5.78e-30 110
MsG0580025196.01.T01 MTR_5g012840 29.730 333 165 11 47 369 14 287 1.77e-29 116
MsG0580025196.01.T01 MTR_3g026920 28.438 429 216 15 18 396 15 402 2.23e-29 118
MsG0580025196.01.T01 MTR_1377s0010 45.522 134 61 4 237 369 5 127 5.04e-29 110
MsG0580025196.01.T01 MTR_3g095600 36.017 236 112 7 24 249 6 212 2.33e-28 113
MsG0580025196.01.T01 MTR_3g082890 27.955 440 230 14 24 396 19 438 3.39e-28 115
MsG0580025196.01.T01 MTR_8g467800 28.217 443 234 14 24 396 22 450 3.83e-27 112
MsG0580025196.01.T01 MTR_7g034110 28.342 374 206 9 24 389 13 332 3.97e-27 110
MsG0580025196.01.T01 MTR_4g080610 28.101 395 218 12 22 399 12 357 5.12e-27 110
MsG0580025196.01.T01 MTR_3g087260 33.684 285 170 7 123 399 184 457 1.25e-25 108
MsG0580025196.01.T01 MTR_3g087260 31.359 287 156 11 24 307 14 262 3.64e-15 77.4
MsG0580025196.01.T01 MTR_8g085430 35.319 235 129 7 11 234 8 230 1.36e-25 106
MsG0580025196.01.T01 MTR_8g085430 34.109 129 74 3 268 387 190 316 4.97e-13 70.1
MsG0580025196.01.T01 MTR_5g044790 45.000 140 44 3 293 399 301 440 1.38e-25 108
MsG0580025196.01.T01 MTR_7g060470 29.551 379 212 14 24 370 5 360 5.11e-25 105
MsG0580025196.01.T01 MTR_3g095630 36.782 174 93 5 222 390 15 176 1.35e-24 100
MsG0580025196.01.T01 MTR_5g033200 38.728 173 89 6 225 391 13 174 1.35e-24 99.8
MsG0580025196.01.T01 MTR_5g013500 27.731 357 211 11 60 396 33 362 2.67e-24 103
MsG0580025196.01.T01 MTR_5g092960 25.503 447 255 16 24 398 21 461 9.20e-24 102
MsG0580025196.01.T01 MTR_5g076150 36.239 218 119 8 132 334 15 227 1.52e-23 98.6
MsG0580025196.01.T01 MTR_3g109982 34.615 260 149 9 141 391 221 468 1.74e-23 103
MsG0580025196.01.T01 MTR_3g109982 41.111 180 100 5 24 202 15 189 7.48e-17 83.2
MsG0580025196.01.T01 MTR_7g056020 28.753 393 211 13 24 391 18 366 1.89e-23 102
MsG0580025196.01.T01 MTR_3g108560 32.313 294 175 8 24 311 22 297 4.21e-23 99.0
MsG0580025196.01.T01 MTR_8g468760 26.877 413 249 17 27 396 14 416 9.26e-23 99.8
MsG0580025196.01.T01 MTR_5g058350 40.984 183 82 5 24 206 10 166 1.56e-22 94.4
MsG0580025196.01.T01 MTR_7g022105 28.846 364 222 11 24 370 51 394 1.58e-22 99.0
MsG0580025196.01.T01 MTR_7g007370 30.184 381 182 18 5 367 1 315 1.62e-22 97.8
MsG0580025196.01.T01 MTR_4g032730 26.898 461 240 18 24 398 17 466 4.72e-22 98.2
MsG0580025196.01.T01 MTR_8g077460 26.303 403 227 15 24 397 12 373 7.71e-22 96.3
MsG0580025196.01.T01 MTR_6g029350 34.742 213 108 10 196 398 6 197 2.09e-21 92.8
MsG0580025196.01.T01 MTR_5g084070 28.372 430 242 14 15 391 3 419 6.10e-21 94.4
MsG0580025196.01.T01 MTR_7g021990 27.793 367 222 11 24 370 50 393 1.13e-20 93.6
MsG0580025196.01.T01 MTR_2g007550 26.923 390 195 11 24 396 16 332 1.41e-20 92.4
MsG0580025196.01.T01 MTR_8g070950 26.802 444 243 17 12 396 11 431 1.65e-20 93.2
MsG0580025196.01.T01 MTR_7g021950 27.793 367 222 11 24 370 50 393 3.43e-20 92.8
MsG0580025196.01.T01 MTR_6g022390 43.802 121 51 5 24 130 7 124 5.10e-20 86.3
MsG0580025196.01.T01 MTR_3g095640 39.326 178 87 9 10 171 3 175 5.37e-20 87.0
MsG0580025196.01.T01 MTR_4g055990 24.622 463 228 14 24 377 11 461 1.64e-19 90.5
MsG0580025196.01.T01 MTR_4g055990 25.054 463 226 15 24 377 11 461 2.70e-19 90.1
MsG0580025196.01.T01 MTR_7g034090 38.182 165 80 7 240 396 159 309 6.13e-19 88.6
MsG0580025196.01.T01 MTR_4g056040 25.330 454 226 16 24 378 11 450 7.40e-19 88.6
MsG0580025196.01.T01 MTR_5g080710 27.021 433 252 15 13 391 24 446 1.49e-18 87.4
MsG0580025196.01.T01 MTR_8g062270 24.889 450 251 17 24 399 18 454 5.21e-18 85.9
MsG0580025196.01.T01 MTR_8g467800 31.390 223 130 5 24 238 22 229 5.70e-18 84.7
MsG0580025196.01.T01 MTR_8g014160 25.616 406 243 14 24 396 43 422 6.48e-18 85.5
MsG0580025196.01.T01 MTR_2g007090 31.381 239 127 9 166 397 84 292 6.93e-18 84.0
MsG0580025196.01.T01 MTR_7g075800 24.880 418 235 15 27 384 14 412 1.12e-17 85.5
MsG0580025196.01.T01 MTR_0571s0010 48.315 89 39 2 17 98 22 110 1.14e-17 78.6
MsG0580025196.01.T01 MTR_4g056020 25.359 418 225 15 24 370 11 412 1.80e-17 84.3
MsG0580025196.01.T01 MTR_7g033945 32.716 162 99 3 24 178 13 171 3.28e-17 79.3
MsG0580025196.01.T01 MTR_3g110010 41.111 180 100 5 24 202 15 189 7.60e-17 83.2
MsG0580025196.01.T01 MTR_7g056280 26.941 219 135 6 192 398 367 572 1.05e-16 82.4
MsG0580025196.01.T01 MTR_7g056280 30.769 169 105 6 24 184 8 172 2.71e-11 65.5
MsG0580025196.01.T01 MTR_3g106960 33.728 169 88 7 239 399 46 198 2.73e-16 78.2
MsG0580025196.01.T01 MTR_2g083840 24.169 451 245 18 24 396 23 454 4.72e-16 80.1
MsG0580025196.01.T01 MTR_5g045700 62.264 53 20 0 17 69 8 60 6.40e-16 72.0
MsG0580025196.01.T01 MTR_4g134150 32.584 178 116 3 25 202 13 186 9.55e-16 76.6
MsG0580025196.01.T01 MTR_8g445780 24.451 364 219 11 24 337 15 372 9.69e-16 78.6
MsG0580025196.01.T01 MTR_2g007610 32.075 159 87 5 251 398 2 150 1.32e-15 74.7
MsG0580025196.01.T01 MTR_8g062310 24.654 434 274 11 9 398 3 427 1.45e-15 78.6
MsG0580025196.01.T01 MTR_4g093690 32.432 185 112 5 26 202 22 201 3.96e-15 75.5
MsG0580025196.01.T01 MTR_8g468840 24.062 453 261 16 17 398 9 449 5.17e-15 76.6
MsG0580025196.01.T01 MTR_4g056030 24.466 421 244 15 24 379 11 422 6.83e-15 76.6
MsG0580025196.01.T01 MTR_1g038710 24.879 414 238 13 24 370 21 428 7.78e-15 76.3
MsG0580025196.01.T01 MTR_3g107940 39.200 125 64 4 272 391 88 205 2.00e-14 74.3
MsG0580025196.01.T01 MTR_3g114200 40.845 142 78 6 24 162 21 159 2.65e-14 70.5
MsG0580025196.01.T01 MTR_5g092960 28.030 264 157 10 24 262 21 276 2.92e-14 74.3
MsG0580025196.01.T01 MTR_8g014260 22.768 448 280 14 12 397 6 449 6.27e-14 73.6
MsG0580025196.01.T01 MTR_7g033940 37.383 107 66 1 24 130 96 201 1.43e-13 70.1
MsG0580025196.01.T01 MTR_3g115430 33.028 109 67 2 291 396 17 122 8.55e-13 65.5
MsG0580025196.01.T01 MTR_8g058965 31.553 206 108 10 24 202 15 214 1.13e-12 69.7
MsG0580025196.01.T01 MTR_7g081290 31.293 147 91 4 257 396 110 253 2.33e-12 67.0
MsG0580025196.01.T01 MTR_2g020180 33.835 133 71 5 270 396 91 212 4.31e-12 65.5
MsG0580025196.01.T01 MTR_8g465650 26.360 239 135 8 14 221 4 232 4.60e-12 67.4
MsG0580025196.01.T01 MTR_3g094980 32.110 109 63 3 272 369 9 117 8.07e-12 63.9
MsG0580025196.01.T01 MTR_5g087940 31.532 222 128 9 11 217 12 224 8.29e-12 66.6
MsG0580025196.01.T01 MTR_8g468810 32.701 211 112 11 13 206 22 219 9.02e-12 66.2
MsG0580025196.01.T01 MTR_8g468810 32.701 211 112 11 13 206 22 219 9.54e-12 66.2
MsG0580025196.01.T01 MTR_1g090900 32.418 182 102 6 14 188 9 176 1.03e-11 64.3
MsG0580025196.01.T01 MTR_8g468810 32.701 211 112 11 13 206 22 219 1.20e-11 65.9
MsG0580025196.01.T01 MTR_3g108140 26.708 161 87 3 253 399 5 148 1.95e-11 62.8
MsG0580025196.01.T01 MTR_6g022410 43.038 79 42 1 323 398 28 106 1.99e-11 61.2
MsG0580025196.01.T01 MTR_8g468810 32.701 211 112 11 13 206 22 219 2.08e-11 65.5
MsG0580025196.01.T01 MTR_8g468810 32.701 211 112 11 13 206 22 219 2.77e-11 65.5
MsG0580025196.01.T01 MTR_4g023670 27.652 264 134 7 14 235 114 362 3.28e-11 65.1
MsG0580025196.01.T01 MTR_3g023270 31.515 165 108 4 24 188 14 173 4.81e-11 64.3
MsG0580025196.01.T01 MTR_8g465380 27.632 228 125 7 24 221 14 231 6.79e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025196.01.T01 AT5G56420 25.057 439 236 17 24 396 8 419 2.59e-20 92.4
MsG0580025196.01.T01 AT5G56420 25.057 439 236 17 24 396 8 419 2.59e-20 92.4
MsG0580025196.01.T01 AT5G56420 25.057 439 236 17 24 396 8 419 2.59e-20 92.4
MsG0580025196.01.T01 AT4G00320 27.147 361 177 12 24 305 15 368 2.86e-20 93.2
MsG0580025196.01.T01 AT5G41830 33.478 230 127 8 24 232 15 239 2.45e-19 90.1
MsG0580025196.01.T01 AT4G26340 24.582 419 264 12 24 396 4 416 3.31e-19 89.4
MsG0580025196.01.T01 AT5G22610 24.711 433 265 13 17 398 13 435 4.22e-19 89.4
MsG0580025196.01.T01 AT5G56560 24.533 428 253 16 22 396 5 415 8.85e-19 88.2
MsG0580025196.01.T01 AT4G00160 25.581 430 255 15 24 396 18 439 1.00e-18 88.2
MsG0580025196.01.T01 AT4G10400 27.027 407 261 13 24 397 4 407 2.26e-18 86.7
MsG0580025196.01.T01 AT4G10400 27.027 407 261 13 24 397 4 407 2.26e-18 86.7
MsG0580025196.01.T01 AT4G10400 27.027 407 261 13 24 397 4 407 2.26e-18 86.7
MsG0580025196.01.T01 AT1G32375 24.466 421 267 16 24 397 4 420 9.76e-18 85.1
MsG0580025196.01.T01 AT1G32375 24.466 421 267 16 24 397 4 420 9.76e-18 85.1
MsG0580025196.01.T01 AT1G78750 24.204 471 259 18 11 399 4 458 2.92e-17 83.6
MsG0580025196.01.T01 AT1G78750 24.204 471 259 18 11 399 4 458 2.92e-17 83.6
MsG0580025196.01.T01 AT4G14103 36.508 189 108 4 24 204 10 194 3.75e-17 83.2
MsG0580025196.01.T01 AT4G14103 36.508 189 108 4 24 204 10 194 4.00e-17 82.8
MsG0580025196.01.T01 AT4G14103 36.508 189 108 4 24 204 10 194 4.00e-17 82.8
MsG0580025196.01.T01 AT1G16930 24.444 450 249 18 21 396 14 446 2.47e-16 80.9
MsG0580025196.01.T01 AT1G16930 24.444 450 249 18 21 396 14 446 2.47e-16 80.9
MsG0580025196.01.T01 AT1G16930 24.444 450 249 18 21 396 14 446 2.47e-16 80.9
MsG0580025196.01.T01 AT5G41630 33.493 209 116 7 24 214 14 217 2.76e-16 80.9
MsG0580025196.01.T01 AT4G15060 29.018 224 135 7 15 220 10 227 5.20e-16 79.7
MsG0580025196.01.T01 AT4G15060 33.158 190 112 6 24 204 174 357 8.11e-16 79.7
MsG0580025196.01.T01 AT5G56690 24.938 401 241 12 24 369 4 399 2.48e-15 77.4
MsG0580025196.01.T01 AT4G27050 23.656 465 249 19 24 399 6 453 3.03e-15 77.4
MsG0580025196.01.T01 AT4G27050 23.656 465 249 19 24 399 6 453 3.03e-15 77.4
MsG0580025196.01.T01 AT4G27050 23.656 465 249 19 24 399 6 453 3.03e-15 77.4
MsG0580025196.01.T01 AT4G27050 23.656 465 249 19 24 399 6 453 3.03e-15 77.4
MsG0580025196.01.T01 AT4G27050 23.656 465 249 19 24 399 6 453 3.03e-15 77.4
MsG0580025196.01.T01 AT3G58880 31.174 247 145 8 24 253 5 243 4.25e-15 77.0
MsG0580025196.01.T01 AT5G41840 32.381 210 118 6 24 213 16 221 6.58e-15 76.6
MsG0580025196.01.T01 AT1G58310 32.000 225 130 5 24 226 10 233 7.92e-15 76.6
MsG0580025196.01.T01 AT1G55030 25.236 424 244 17 17 386 4 408 1.55e-14 75.1
MsG0580025196.01.T01 AT5G22670 31.383 188 115 5 23 205 12 190 1.77e-14 75.1
MsG0580025196.01.T01 AT1G55030 25.236 424 244 17 17 386 14 418 2.09e-14 75.1
MsG0580025196.01.T01 AT3G51530 23.414 457 266 18 5 396 13 450 2.68e-14 74.7
MsG0580025196.01.T01 AT2G04230 27.431 401 221 16 24 365 15 404 3.63e-14 74.3
MsG0580025196.01.T01 AT4G09920 32.609 184 118 4 24 204 4 184 3.78e-14 73.2
MsG0580025196.01.T01 AT4G09920 32.609 184 118 4 24 204 4 184 3.78e-14 73.2
MsG0580025196.01.T01 AT3G59240 33.333 195 110 8 24 205 10 197 4.57e-14 73.9
MsG0580025196.01.T01 AT5G60610 27.340 406 212 19 24 369 4 386 4.63e-14 73.6
MsG0580025196.01.T01 AT5G60610 27.340 406 212 19 24 369 4 386 4.63e-14 73.6
MsG0580025196.01.T01 AT4G22280 35.294 187 107 7 24 204 4 182 5.52e-14 72.8
MsG0580025196.01.T01 AT4G09920 32.258 186 116 5 24 204 4 184 5.67e-14 72.4
MsG0580025196.01.T01 AT4G09920 32.258 186 116 5 24 204 4 184 5.67e-14 72.4
MsG0580025196.01.T01 AT4G09920 32.258 186 116 5 24 204 4 184 5.67e-14 72.4
MsG0580025196.01.T01 AT3G58980 29.555 247 154 10 24 259 4 241 5.87e-14 73.9
MsG0580025196.01.T01 AT4G22280 35.294 187 107 7 24 204 4 182 7.38e-14 73.2
MsG0580025196.01.T01 AT1G60410 30.928 194 128 3 15 204 3 194 9.01e-14 72.8
MsG0580025196.01.T01 AT4G13965 25.721 416 259 15 24 396 12 420 9.54e-14 72.8
MsG0580025196.01.T01 AT3G59200 35.354 198 100 10 24 204 9 195 1.25e-13 72.0
MsG0580025196.01.T01 AT5G53840 22.517 453 270 15 4 396 6 437 1.28e-13 72.4
MsG0580025196.01.T01 AT3G59200 35.354 198 100 10 24 204 9 195 1.51e-13 72.4
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 1.53e-13 71.2
MsG0580025196.01.T01 AT3G52680 25.115 434 250 17 24 396 23 442 1.56e-13 72.4
MsG0580025196.01.T01 AT1G69630 31.183 186 118 5 24 204 20 200 2.50e-13 71.6
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.55e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.55e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.62e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.62e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.62e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 2.62e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 22 214 2.69e-13 71.2
MsG0580025196.01.T01 AT3G59170 31.064 235 128 8 24 226 9 241 3.00e-13 71.6
MsG0580025196.01.T01 AT5G38590 25.945 397 226 11 24 369 4 383 3.17e-13 71.2
MsG0580025196.01.T01 AT3G60040 31.658 199 112 6 27 204 18 213 3.39e-13 71.6
MsG0580025196.01.T01 AT4G00315 31.651 218 135 7 27 235 7 219 3.42e-13 71.2
MsG0580025196.01.T01 AT1G06630 31.313 198 116 8 23 205 13 205 4.26e-13 71.2
MsG0580025196.01.T01 AT3G60040 31.658 199 112 6 27 204 237 432 4.99e-13 71.2
MsG0580025196.01.T01 AT3G60040 31.658 199 112 6 27 204 235 430 5.30e-13 71.2
MsG0580025196.01.T01 AT3G60040 31.658 199 112 6 27 204 237 432 5.33e-13 71.2
MsG0580025196.01.T01 AT3G60040 31.658 199 112 6 27 204 238 433 5.43e-13 71.2
MsG0580025196.01.T01 AT1G22000 25.446 448 266 14 6 396 13 449 6.73e-13 70.5
MsG0580025196.01.T01 AT3G59190 31.795 195 114 6 24 204 14 203 7.70e-13 69.7
MsG0580025196.01.T01 AT3G59190 31.795 195 114 6 24 204 14 203 7.92e-13 70.5
MsG0580025196.01.T01 AT4G14096 33.862 189 111 5 24 204 10 192 8.95e-13 70.1
MsG0580025196.01.T01 AT4G14096 33.862 189 111 5 24 204 10 192 8.95e-13 70.1
MsG0580025196.01.T01 AT3G49030 23.434 431 257 13 24 396 23 438 9.78e-13 69.7
MsG0580025196.01.T01 AT3G56780 25.402 311 186 10 22 326 7 277 1.00e-12 69.7
MsG0580025196.01.T01 AT3G56780 25.402 311 186 10 22 326 7 277 1.07e-12 69.7
MsG0580025196.01.T01 AT3G56780 25.402 311 186 10 22 326 7 277 1.08e-12 69.7
MsG0580025196.01.T01 AT1G55660 31.858 226 140 7 19 235 50 270 1.28e-12 69.7
MsG0580025196.01.T01 AT1G55660 31.858 226 140 7 19 235 50 270 1.43e-12 68.9
MsG0580025196.01.T01 AT3G44060 31.797 217 122 9 24 221 1 210 1.50e-12 69.3
MsG0580025196.01.T01 AT3G44810 31.313 198 117 6 21 204 6 198 2.37e-12 68.6
MsG0580025196.01.T01 AT5G38590 32.597 181 120 2 24 204 4 182 3.72e-12 67.0
MsG0580025196.01.T01 AT3G49150 32.850 207 116 8 24 213 18 218 3.78e-12 68.2
MsG0580025196.01.T01 AT3G58920 31.658 199 120 7 24 208 4 200 5.54e-12 67.8
MsG0580025196.01.T01 AT2G26860 33.508 191 111 6 24 204 4 188 5.80e-12 67.4
MsG0580025196.01.T01 AT2G26860 33.508 191 111 6 24 204 4 188 5.80e-12 67.4
MsG0580025196.01.T01 AT4G13960 33.333 177 91 6 24 183 4 170 2.13e-11 65.9
MsG0580025196.01.T01 AT4G13960 33.333 177 91 6 24 183 4 170 2.13e-11 65.9
MsG0580025196.01.T01 AT5G56440 31.217 189 114 8 24 204 4 184 2.20e-11 65.5
MsG0580025196.01.T01 AT3G26920 28.685 251 145 11 168 399 66 301 2.80e-11 64.3
MsG0580025196.01.T01 AT3G58860 23.684 342 194 9 27 310 12 344 3.99e-11 65.1
MsG0580025196.01.T01 AT3G62440 30.435 207 114 8 24 207 4 203 4.48e-11 64.7
MsG0580025196.01.T01 AT5G56560 29.534 193 127 6 22 211 5 191 5.67e-11 64.7
MsG0580025196.01.T01 AT5G56800 24.126 286 150 10 164 396 70 341 7.27e-11 63.5
MsG0580025196.01.T01 AT3G26922 30.601 183 121 5 24 204 16 194 7.54e-11 63.2
MsG0580025196.01.T01 AT3G26922 30.601 183 121 5 24 204 16 194 7.54e-11 63.2
MsG0580025196.01.T01 AT2G42730 30.303 198 114 8 24 204 7 197 8.07e-11 63.9

Find 90 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGTCAAATTCTCTAATA+TGG 0.175923 5:-15101402 None:intergenic
ACACATTCAGGAACATGATA+TGG 0.257287 5:-15101972 None:intergenic
AATGGTAATATCTTGAAGTT+TGG 0.268866 5:-15101807 None:intergenic
TAACCGTACTTCGACTATAT+TGG 0.279830 5:+15101729 MsG0580025196.01.T01:CDS
GATTTAAATAAACTTATCTA+TGG 0.283646 5:+15101374 MsG0580025196.01.T01:CDS
AAGGATCTCCGTTTAATGTT+AGG 0.305183 5:+15101188 MsG0580025196.01.T01:CDS
TGTTTGGGTCTATAAGATAT+AGG 0.347877 5:-15102110 None:intergenic
ATCTTCATAAAGTTCGTGTT+TGG 0.350428 5:-15102126 None:intergenic
CACTTGTGGTTCTTCATTTG+TGG 0.352340 5:+15101258 MsG0580025196.01.T01:CDS
ATATGAATTGATTTCTTCAA+TGG 0.366946 5:-15101678 None:intergenic
ACTAAAACCGGTAGTCTGTT+TGG 0.378126 5:-15101126 None:intergenic
CTCCGTTTAATGTTAGGATT+AGG 0.381471 5:+15101194 MsG0580025196.01.T01:CDS
TTACATCATCCCAGTCAAAA+AGG 0.383547 5:-15101763 None:intergenic
CAAACAAATTACCTTTGAAA+TGG 0.386035 5:-15101825 None:intergenic
GAGAAAATGGTAGGCGGCAA+AGG 0.386591 5:-15101224 None:intergenic
TCTTCATAAAGTTCGTGTTT+GGG 0.387242 5:-15102125 None:intergenic
CTTTCTGTGGCAGGAGGTGG+TGG 0.387475 5:-15100834 None:intergenic
TACCTTGCAAATCGAAAATC+AGG 0.391182 5:-15102044 None:intergenic
ATGGTAATATCTTGAAGTTT+GGG 0.391559 5:-15101806 None:intergenic
ACTGAGAGTGAGTGGCATAA+TGG 0.393524 5:-15100978 None:intergenic
CTGAGAGTGAGTGGCATAAT+GGG 0.403343 5:-15100977 None:intergenic
GAAATCAATTCATATTATAC+TGG 0.411236 5:+15101686 MsG0580025196.01.T01:CDS
AAAATGGTAGGCGGCAAAGG+GGG 0.413341 5:-15101221 None:intergenic
AGCCTAATCCTAACATTAAA+CGG 0.415794 5:-15101196 None:intergenic
AAATGAGATGAAACACATTC+AGG 0.418209 5:-15101984 None:intergenic
CTTGAAGTTTGGGACAACTT+TGG 0.425364 5:-15101796 None:intergenic
AGCAGTGTTACAGTGGGAAT+AGG 0.426444 5:+15101449 MsG0580025196.01.T01:CDS
GCAGTGTTACAGTGGGAATA+GGG 0.427697 5:+15101450 MsG0580025196.01.T01:CDS
AGCTTTCATCAACTTGGATA+GGG 0.433233 5:-15101483 None:intergenic
CTCCTCTTGCAAAACACTTG+TGG 0.435293 5:+15101244 MsG0580025196.01.T01:CDS
GTTTGGGTCTATAAGATATA+GGG 0.435489 5:-15102109 None:intergenic
GGCCTTTCTGTGGCAGGAGG+TGG 0.438668 5:-15100837 None:intergenic
GGGGTAGGTGGTGATTGTGT+GGG 0.439707 5:-15101073 None:intergenic
AGAAAATGGTAGGCGGCAAA+GGG 0.446211 5:-15101223 None:intergenic
AGCCGTGGCCTTTCTGTGGC+AGG 0.447730 5:-15100843 None:intergenic
ATGTGAGTTACTATTTCATC+AGG 0.449031 5:-15100894 None:intergenic
TTGCATGTGGGAGAGATCCT+TGG 0.449953 5:-15102161 None:intergenic
GAAAATGGTAGGCGGCAAAG+GGG 0.458174 5:-15101222 None:intergenic
TCAGAATGCGAGACTTCTAC+AGG 0.460002 5:+15102073 MsG0580025196.01.T01:CDS
TATGAATTGATTTCTTCAAT+GGG 0.460528 5:-15101677 None:intergenic
TAGCTTTCATCAACTTGGAT+AGG 0.464233 5:-15101484 None:intergenic
ATTGTCAAATTCTCTAATAT+GGG 0.465640 5:-15101401 None:intergenic
ATTTCAAAACCAAAGTGGAT+TGG 0.475241 5:+15101943 MsG0580025196.01.T01:CDS
AGGGGTAGGTGGTGATTGTG+TGG 0.477592 5:-15101074 None:intergenic
AACGAACATTCATCAGATCA+AGG 0.479064 5:-15101337 None:intergenic
GAACTACCATTCTCTCGAAA+AGG 0.483117 5:+15100949 MsG0580025196.01.T01:CDS
TGCATGTGGGAGAGATCCTT+GGG 0.486907 5:-15102160 None:intergenic
AATACTAGCTTTCATCAACT+TGG 0.497925 5:-15101489 None:intergenic
CCAACATCTAAGTTTGTTCG+AGG 0.497972 5:+15101550 MsG0580025196.01.T01:CDS
CCATTTATGAAAACTAAAAC+CGG 0.499746 5:-15101138 None:intergenic
TATTCCCACTGTAACACTGC+TGG 0.503356 5:-15101447 None:intergenic
TGGGTATTTCCAATCCACTT+TGG 0.506783 5:-15101952 None:intergenic
TCAAGATATTACCATTTCAA+AGG 0.507304 5:+15101814 MsG0580025196.01.T01:CDS
CACATTCAGGAACATGATAT+GGG 0.509666 5:-15101971 None:intergenic
CCTCGAACAAACTTAGATGT+TGG 0.520630 5:-15101550 None:intergenic
TTCTGAAAGCATATTTGAGT+GGG 0.530701 5:-15100929 None:intergenic
AGCTAGTATTCATTTATTCG+AGG 0.530972 5:+15101502 MsG0580025196.01.T01:CDS
ATTTAAATAAACTTATCTAT+GGG 0.533016 5:+15101375 MsG0580025196.01.T01:CDS
AGATCAAGGGTCTTAAGTAA+AGG 0.540258 5:-15101323 None:intergenic
CACCACCTCCTGCCACAGAA+AGG 0.545328 5:+15100835 MsG0580025196.01.T01:CDS
CTACCATTCTCTCGAAAAGG+TGG 0.555948 5:+15100952 MsG0580025196.01.T01:CDS
GGCTAAACAACGTTGCGTCA+AGG 0.557277 5:+15101169 MsG0580025196.01.T01:CDS
TGTGGGAGAGATCCTTGGGC+AGG 0.558761 5:-15102156 None:intergenic
CGTTCTCCACATTGTTATCG+TGG 0.560946 5:-15101010 None:intergenic
GCTTTCATCAACTTGGATAG+GGG 0.561973 5:-15101482 None:intergenic
TATCATTCCAAACAGACTAC+CGG 0.563526 5:+15101119 MsG0580025196.01.T01:CDS
AACAGAACAATCAGTCATAG+TGG 0.564251 5:-15101294 None:intergenic
GTTCTGAAAGCATATTTGAG+TGG 0.565473 5:-15100930 None:intergenic
TTGCAAGAGGAGAAAATGGT+AGG 0.569951 5:-15101233 None:intergenic
AATTAATGACAACTTGCATG+TGG 0.570388 5:-15102174 None:intergenic
AAGTGATTTCAAAACCAAAG+TGG 0.577134 5:+15101938 MsG0580025196.01.T01:CDS
GGGTAGGTGGTGATTGTGTG+GGG 0.583320 5:-15101072 None:intergenic
AAGATTTATCCTCCTGCCCA+AGG 0.591657 5:+15102144 MsG0580025196.01.T01:CDS
CGTGGCCTTTCTGTGGCAGG+AGG 0.591985 5:-15100840 None:intergenic
AAACCAATATAGTCGAAGTA+CGG 0.592592 5:-15101732 None:intergenic
AAATGGTAGGCGGCAAAGGG+GGG 0.594179 5:-15101220 None:intergenic
GGGAGAGATCCTTGGGCAGG+AGG 0.596125 5:-15102153 None:intergenic
ACGAACATTCATCAGATCAA+GGG 0.605217 5:-15101336 None:intergenic
CTCCTGCCACAGAAAGGCCA+CGG 0.620545 5:+15100841 MsG0580025196.01.T01:CDS
TGACAGCCGTGGCCTTTCTG+TGG 0.621382 5:-15100847 None:intergenic
AGTCAAGAACTGAGAGTGAG+TGG 0.624674 5:-15100986 None:intergenic
AAGTTCCAGCAGTGTTACAG+TGG 0.625514 5:+15101442 MsG0580025196.01.T01:CDS
TGACTGCGTTGATTAATCGA+TGG 0.633416 5:-15101043 None:intergenic
ATTAATGACAACTTGCATGT+GGG 0.635116 5:-15102173 None:intergenic
TACCATTCTCTCGAAAAGGT+GGG 0.641962 5:+15100953 MsG0580025196.01.T01:CDS
AGTTCCAGCAGTGTTACAGT+GGG 0.658575 5:+15101443 MsG0580025196.01.T01:CDS
GTCGTCGACAATGACAGCCG+TGG 0.675523 5:-15100858 None:intergenic
ACATTAGAAACTGCTCTGAG+TGG 0.679433 5:-15101527 None:intergenic
CAAGAGGAGAAAATGGTAGG+CGG 0.712054 5:-15101230 None:intergenic
TGACTTCCACGATAACAATG+TGG 0.712135 5:+15101004 MsG0580025196.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAAACTTATCTAT+GGG + Chr5:15101375-15101394 MsG0580025196.01.T01:CDS 10.0%
!! ACTTAAGATAAAAAGATTTA+AGG - Chr5:15101097-15101116 None:intergenic 15.0%
!! ATATAGATGTATAATAAAAG+AGG - Chr5:15101601-15101620 None:intergenic 15.0%
!! CTTAAGATAAAAAGATTTAA+GGG - Chr5:15101096-15101115 None:intergenic 15.0%
!! GATTTAAATAAACTTATCTA+TGG + Chr5:15101374-15101393 MsG0580025196.01.T01:CDS 15.0%
!! TTAAGATAAAAAGATTTAAG+GGG - Chr5:15101095-15101114 None:intergenic 15.0%
!! AAAACAATTAACACTATCTA+CGG - Chr5:15101857-15101876 None:intergenic 20.0%
!! AATTGTCAAATTCTCTAATA+TGG - Chr5:15101405-15101424 None:intergenic 20.0%
!! AGGTAATAAGATATATCATA+TGG + Chr5:15101570-15101589 MsG0580025196.01.T01:intron 20.0%
!! ATTGTCAAATTCTCTAATAT+GGG - Chr5:15101404-15101423 None:intergenic 20.0%
!! GAAATCAATTCATATTATAC+TGG + Chr5:15101686-15101705 MsG0580025196.01.T01:CDS 20.0%
!! TAAAATAGGATATGTCAAAA+CGG - Chr5:15101899-15101918 None:intergenic 20.0%
!!! ATATGAATTGATTTCTTCAA+TGG - Chr5:15101681-15101700 None:intergenic 20.0%
!!! TATGAATTGATTTCTTCAAT+GGG - Chr5:15101680-15101699 None:intergenic 20.0%
! AATGGTAATATCTTGAAGTT+TGG - Chr5:15101810-15101829 None:intergenic 25.0%
! ATGGTAATATCTTGAAGTTT+GGG - Chr5:15101809-15101828 None:intergenic 25.0%
! CCATTTATGAAAACTAAAAC+CGG - Chr5:15101141-15101160 None:intergenic 25.0%
! CTGTCAATCAGAAATAAAAT+AGG - Chr5:15101913-15101932 None:intergenic 25.0%
! TCAAGATATTACCATTTCAA+AGG + Chr5:15101814-15101833 MsG0580025196.01.T01:CDS 25.0%
!! CAAACAAATTACCTTTGAAA+TGG - Chr5:15101828-15101847 None:intergenic 25.0%
!!! CGGTTTTAGTTTTCATAAAT+GGG + Chr5:15101139-15101158 MsG0580025196.01.T01:CDS 25.0%
!!! TTTTAGTTTTCATAAATGGG+TGG + Chr5:15101142-15101161 MsG0580025196.01.T01:CDS 25.0%
AAACCAATATAGTCGAAGTA+CGG - Chr5:15101735-15101754 None:intergenic 30.0%
AAATGAGATGAAACACATTC+AGG - Chr5:15101987-15102006 None:intergenic 30.0%
AAGTGATTTCAAAACCAAAG+TGG + Chr5:15101938-15101957 MsG0580025196.01.T01:CDS 30.0%
AATTAATGACAACTTGCATG+TGG - Chr5:15102177-15102196 None:intergenic 30.0%
AGCCTAATCCTAACATTAAA+CGG - Chr5:15101199-15101218 None:intergenic 30.0%
AGCTAGTATTCATTTATTCG+AGG + Chr5:15101502-15101521 MsG0580025196.01.T01:CDS 30.0%
ATCTTCATAAAGTTCGTGTT+TGG - Chr5:15102129-15102148 None:intergenic 30.0%
ATGTGAGTTACTATTTCATC+AGG - Chr5:15100897-15100916 None:intergenic 30.0%
ATTAATGACAACTTGCATGT+GGG - Chr5:15102176-15102195 None:intergenic 30.0%
ATTTCAAAACCAAAGTGGAT+TGG + Chr5:15101943-15101962 MsG0580025196.01.T01:CDS 30.0%
GATAAAAAGATTTAAGGGGT+AGG - Chr5:15101091-15101110 None:intergenic 30.0%
GTTTGGGTCTATAAGATATA+GGG - Chr5:15102112-15102131 None:intergenic 30.0%
TCTTCATAAAGTTCGTGTTT+GGG - Chr5:15102128-15102147 None:intergenic 30.0%
TGTTTGGGTCTATAAGATAT+AGG - Chr5:15102113-15102132 None:intergenic 30.0%
! CATTTTACACTATCAAGATG+TGG + Chr5:15102019-15102038 MsG0580025196.01.T01:CDS 30.0%
! TACGGTTAAGTTTTCAAACA+CGG - Chr5:15101717-15101736 None:intergenic 30.0%
! TTCTGAAAGCATATTTGAGT+GGG - Chr5:15100932-15100951 None:intergenic 30.0%
! TTTTTCATGTCCTTTTTGAC+TGG + Chr5:15101753-15101772 MsG0580025196.01.T01:CDS 30.0%
!! AATACTAGCTTTCATCAACT+TGG - Chr5:15101492-15101511 None:intergenic 30.0%
!! TGTTCGTTTTGATGATATAG+AGG + Chr5:15101352-15101371 MsG0580025196.01.T01:CDS 30.0%
!! TTTTCATGTCCTTTTTGACT+GGG + Chr5:15101754-15101773 MsG0580025196.01.T01:CDS 30.0%
!!! CCGGTTTTAGTTTTCATAAA+TGG + Chr5:15101138-15101157 MsG0580025196.01.T01:CDS 30.0%
AAAAAGATTTAAGGGGTAGG+TGG - Chr5:15101088-15101107 None:intergenic 35.0%
AACAGAACAATCAGTCATAG+TGG - Chr5:15101297-15101316 None:intergenic 35.0%
AACGAACATTCATCAGATCA+AGG - Chr5:15101340-15101359 None:intergenic 35.0%
AAGGATCTCCGTTTAATGTT+AGG + Chr5:15101188-15101207 MsG0580025196.01.T01:CDS 35.0%
ACACATTCAGGAACATGATA+TGG - Chr5:15101975-15101994 None:intergenic 35.0%
ACGAACATTCATCAGATCAA+GGG - Chr5:15101339-15101358 None:intergenic 35.0%
AGATCAAGGGTCTTAAGTAA+AGG - Chr5:15101326-15101345 None:intergenic 35.0%
AGCTTTCATCAACTTGGATA+GGG - Chr5:15101486-15101505 None:intergenic 35.0%
CACATTCAGGAACATGATAT+GGG - Chr5:15101974-15101993 None:intergenic 35.0%
CTCCGTTTAATGTTAGGATT+AGG + Chr5:15101194-15101213 MsG0580025196.01.T01:CDS 35.0%
TAACCGTACTTCGACTATAT+TGG + Chr5:15101729-15101748 MsG0580025196.01.T01:CDS 35.0%
TACCTTGCAAATCGAAAATC+AGG - Chr5:15102047-15102066 None:intergenic 35.0%
TAGCTTTCATCAACTTGGAT+AGG - Chr5:15101487-15101506 None:intergenic 35.0%
TATCATTCCAAACAGACTAC+CGG + Chr5:15101119-15101138 MsG0580025196.01.T01:CDS 35.0%
TTACATCATCCCAGTCAAAA+AGG - Chr5:15101766-15101785 None:intergenic 35.0%
! ACGGTTAAGTTTTCAAACAC+GGG - Chr5:15101716-15101735 None:intergenic 35.0%
! TGTTTTGCAAGAGGAGAAAA+TGG - Chr5:15101240-15101259 None:intergenic 35.0%
! TTTTCATAAATGGGTGGAAG+CGG + Chr5:15101148-15101167 MsG0580025196.01.T01:CDS 35.0%
!! AACCTGATTTTCGATTTGCA+AGG + Chr5:15102042-15102061 MsG0580025196.01.T01:CDS 35.0%
!! GTTCTGAAAGCATATTTGAG+TGG - Chr5:15100933-15100952 None:intergenic 35.0%
ACTAAAACCGGTAGTCTGTT+TGG - Chr5:15101129-15101148 None:intergenic 40.0%
CACTTGTGGTTCTTCATTTG+TGG + Chr5:15101258-15101277 MsG0580025196.01.T01:CDS 40.0%
CCTCGAACAAACTTAGATGT+TGG - Chr5:15101553-15101572 None:intergenic 40.0%
GAACTACCATTCTCTCGAAA+AGG + Chr5:15100949-15100968 MsG0580025196.01.T01:CDS 40.0%
GCTTTCATCAACTTGGATAG+GGG - Chr5:15101485-15101504 None:intergenic 40.0%
TACCATTCTCTCGAAAAGGT+GGG + Chr5:15100953-15100972 MsG0580025196.01.T01:CDS 40.0%
TGACTTCCACGATAACAATG+TGG + Chr5:15101004-15101023 MsG0580025196.01.T01:CDS 40.0%
TGGGTATTTCCAATCCACTT+TGG - Chr5:15101955-15101974 None:intergenic 40.0%
TTGCAAGAGGAGAAAATGGT+AGG - Chr5:15101236-15101255 None:intergenic 40.0%
! AACCACAAGTGTTTTGCAAG+AGG - Chr5:15101249-15101268 None:intergenic 40.0%
! ACATTAGAAACTGCTCTGAG+TGG - Chr5:15101530-15101549 None:intergenic 40.0%
! ATTTTGTTCCTGTGCAGATG+GGG + Chr5:15101645-15101664 MsG0580025196.01.T01:intron 40.0%
! CCAACATCTAAGTTTGTTCG+AGG + Chr5:15101550-15101569 MsG0580025196.01.T01:CDS 40.0%
! CTTGAAGTTTGGGACAACTT+TGG - Chr5:15101799-15101818 None:intergenic 40.0%
! GATTTTGTTCCTGTGCAGAT+GGG + Chr5:15101644-15101663 MsG0580025196.01.T01:intron 40.0%
! TGATTTTGTTCCTGTGCAGA+TGG + Chr5:15101643-15101662 MsG0580025196.01.T01:intron 40.0%
!! TGACTGCGTTGATTAATCGA+TGG - Chr5:15101046-15101065 None:intergenic 40.0%
AAGATTTATCCTCCTGCCCA+AGG + Chr5:15102144-15102163 MsG0580025196.01.T01:CDS 45.0%
AAGTTCCAGCAGTGTTACAG+TGG + Chr5:15101442-15101461 MsG0580025196.01.T01:CDS 45.0%
ACTGAGAGTGAGTGGCATAA+TGG - Chr5:15100981-15101000 None:intergenic 45.0%
AGAAAATGGTAGGCGGCAAA+GGG - Chr5:15101226-15101245 None:intergenic 45.0%
AGCAGTGTTACAGTGGGAAT+AGG + Chr5:15101449-15101468 MsG0580025196.01.T01:CDS 45.0%
AGTCAAGAACTGAGAGTGAG+TGG - Chr5:15100989-15101008 None:intergenic 45.0%
AGTTCCAGCAGTGTTACAGT+GGG + Chr5:15101443-15101462 MsG0580025196.01.T01:CDS 45.0%
CAAGAGGAGAAAATGGTAGG+CGG - Chr5:15101233-15101252 None:intergenic 45.0%
CGTTCTCCACATTGTTATCG+TGG - Chr5:15101013-15101032 None:intergenic 45.0%
CTACCATTCTCTCGAAAAGG+TGG + Chr5:15100952-15100971 MsG0580025196.01.T01:CDS 45.0%
CTCCTCTTGCAAAACACTTG+TGG + Chr5:15101244-15101263 MsG0580025196.01.T01:CDS 45.0%
CTGAGAGTGAGTGGCATAAT+GGG - Chr5:15100980-15100999 None:intergenic 45.0%
GCAGTGTTACAGTGGGAATA+GGG + Chr5:15101450-15101469 MsG0580025196.01.T01:CDS 45.0%
TATTCCCACTGTAACACTGC+TGG - Chr5:15101450-15101469 None:intergenic 45.0%
TCAGAATGCGAGACTTCTAC+AGG + Chr5:15102073-15102092 MsG0580025196.01.T01:CDS 45.0%
AAAATGGTAGGCGGCAAAGG+GGG - Chr5:15101224-15101243 None:intergenic 50.0%
GAAAATGGTAGGCGGCAAAG+GGG - Chr5:15101225-15101244 None:intergenic 50.0%
GAGAAAATGGTAGGCGGCAA+AGG - Chr5:15101227-15101246 None:intergenic 50.0%
GGCTAAACAACGTTGCGTCA+AGG + Chr5:15101169-15101188 MsG0580025196.01.T01:CDS 50.0%
TGCATGTGGGAGAGATCCTT+GGG - Chr5:15102163-15102182 None:intergenic 50.0%
TTGCATGTGGGAGAGATCCT+TGG - Chr5:15102164-15102183 None:intergenic 50.0%
! TCAGTTTTCCCCATCTGCAC+AGG - Chr5:15101656-15101675 None:intergenic 50.0%
!! GACCCACCTTTTCGAGAGAA+TGG - Chr5:15100958-15100977 None:intergenic 50.0%
AAATGGTAGGCGGCAAAGGG+GGG - Chr5:15101223-15101242 None:intergenic 55.0%
AGGGGTAGGTGGTGATTGTG+TGG - Chr5:15101077-15101096 None:intergenic 55.0%
GGGGTAGGTGGTGATTGTGT+GGG - Chr5:15101076-15101095 None:intergenic 55.0%
GGGTAGGTGGTGATTGTGTG+GGG - Chr5:15101075-15101094 None:intergenic 55.0%
CACCACCTCCTGCCACAGAA+AGG + Chr5:15100835-15100854 MsG0580025196.01.T01:CDS 60.0%
CTCCTGCCACAGAAAGGCCA+CGG + Chr5:15100841-15100860 MsG0580025196.01.T01:CDS 60.0%
CTTTCTGTGGCAGGAGGTGG+TGG - Chr5:15100837-15100856 None:intergenic 60.0%
GTCGTCGACAATGACAGCCG+TGG - Chr5:15100861-15100880 None:intergenic 60.0%
TGACAGCCGTGGCCTTTCTG+TGG - Chr5:15100850-15100869 None:intergenic 60.0%
TGTGGGAGAGATCCTTGGGC+AGG - Chr5:15102159-15102178 None:intergenic 60.0%
AGCCGTGGCCTTTCTGTGGC+AGG - Chr5:15100846-15100865 None:intergenic 65.0%
CGTGGCCTTTCTGTGGCAGG+AGG - Chr5:15100843-15100862 None:intergenic 65.0%
GGCCTTTCTGTGGCAGGAGG+TGG - Chr5:15100840-15100859 None:intergenic 65.0%
GGGAGAGATCCTTGGGCAGG+AGG - Chr5:15102156-15102175 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 15100813 15102199 15100813 ID=MsG0580025196.01;Name=MsG0580025196.01
Chr5 mRNA 15100813 15102199 15100813 ID=MsG0580025196.01.T01;Parent=MsG0580025196.01;Name=MsG0580025196.01.T01;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|399
Chr5 exon 15100813 15101571 15100813 ID=MsG0580025196.01.T01:exon:6163;Parent=MsG0580025196.01.T01
Chr5 exon 15101662 15101835 15101662 ID=MsG0580025196.01.T01:exon:6164;Parent=MsG0580025196.01.T01
Chr5 exon 15101933 15102199 15101933 ID=MsG0580025196.01.T01:exon:6165;Parent=MsG0580025196.01.T01
Chr5 CDS 15100813 15101571 15100813 ID=MsG0580025196.01.T01:cds;Parent=MsG0580025196.01.T01
Chr5 CDS 15101662 15101835 15101662 ID=MsG0580025196.01.T01:cds;Parent=MsG0580025196.01.T01
Chr5 CDS 15101933 15102199 15101933 ID=MsG0580025196.01.T01:cds;Parent=MsG0580025196.01.T01
Gene Sequence

>MsG0580025196.01.T01

ATGGAAAACATTCTTCATCAACCACCACCTCCTGCCACAGAAAGGCCACGGCTGTCATTGTCGACGACGATCGACGACTTACCTGATGAAATAGTAACTCACATTCTCTCTTTTCTCCCACTCAAATATGCTTTCAGAACTACCATTCTCTCGAAAAGGTGGGTCCCATTATGCCACTCACTCTCAGTTCTTGACTTCCACGATAACAATGTGGAGAACGCAGACGACTTCCATCGATTAATCAACGCAGTCATGATCTCCCCACACAATCACCACCTACCCCTTAAATCTTTTTATCTTAAGTGTTATCATTCCAAACAGACTACCGGTTTTAGTTTTCATAAATGGGTGGAAGCGGCTAAACAACGTTGCGTCAAGGATCTCCGTTTAATGTTAGGATTAGGCTTCCCCCCTTTGCCGCCTACCATTTTCTCCTCTTGCAAAACACTTGTGGTTCTTCATTTGTGGAGTTTACGTTTAGCCACTATGACTGATTGTTCTGTTCATCTTCCTTTACTTAAGACCCTTGATCTGATGAATGTTCGTTTTGATGATATAGAGGATTTAAATAAACTTATCTATGGGTGTCCCATATTAGAGAATTTGACAATTTCATATGTGAAAGCAGCAAGTTCCAGCAGTGTTACAGTGGGAATAGGGTACTCTAAACCCCTATCCAAGTTGATGAAAGCTAGTATTCATTTATTCGAGGTTCCACTCAGAGCAGTTTCTAATGTCCAACATCTAAGTTTGTTCGAGATGGGGAAAACTGATCCCATTGAAGAAATCAATTCATATTATACTGGCATTCCCGTGTTTGAAAACTTAACCGTACTTCGACTATATTGGTTTTTTCATGTCCTTTTTGACTGGGATGATGTAATGAAAATGCTCCAAAGTTGTCCCAAACTTCAAGATATTACCATTTCAAAGTGCACAAGTGATTTCAAAACCAAAGTGGATTGGAAATACCCATATCATGTTCCTGAATGTGTTTCATCTCATTTAACAACATGTAACATTTTACACTATCAAGATGTGGAACCTGATTTTCGATTTGCAAGGTATATTTTTCAGAATGCGAGACTTCTACAGGATATGAAAATTTACCCTATATCTTATAGACCCAAACACGAACTTTATGAAGATTTATCCTCCTGCCCAAGGATCTCTCCCACATGCAAGTTGTCATTAATTTGA

Protein sequence

>MsG0580025196.01.T01

MENILHQPPPPATERPRLSLSTTIDDLPDEIVTHILSFLPLKYAFRTTILSKRWVPLCHSLSVLDFHDNNVENADDFHRLINAVMISPHNHHLPLKSFYLKCYHSKQTTGFSFHKWVEAAKQRCVKDLRLMLGLGFPPLPPTIFSSCKTLVVLHLWSLRLATMTDCSVHLPLLKTLDLMNVRFDDIEDLNKLIYGCPILENLTISYVKAASSSSVTVGIGYSKPLSKLMKASIHLFEVPLRAVSNVQHLSLFEMGKTDPIEEINSYYTGIPVFENLTVLRLYWFFHVLFDWDDVMKMLQSCPKLQDITISKCTSDFKTKVDWKYPYHVPECVSSHLTTCNILHYQDVEPDFRFARYIFQNARLLQDMKIYPISYRPKHELYEDLSSCPRISPTCKLSLI*