AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043567.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043567.01.T01 MTR_1g085120 50.000 324 119 7 1 289 158 473 2.54e-90 276
MsG0880043567.01.T01 MTR_1g085120 50.000 324 119 7 1 289 233 548 9.44e-90 277
MsG0880043567.01.T01 MTR_4g039440 49.216 319 121 5 8 289 100 414 1.73e-83 257
MsG0880043567.01.T01 MTR_6g022500 46.417 321 129 6 1 288 167 477 3.24e-81 253
MsG0880043567.01.T01 MTR_7g055943 46.951 328 125 8 1 289 106 423 4.67e-78 244
MsG0880043567.01.T01 MTR_6g011460 47.826 322 125 6 1 289 112 423 5.65e-78 243
MsG0880043567.01.T01 MTR_6g044572 50.526 285 121 5 20 288 109 389 9.09e-76 237
MsG0880043567.01.T01 MTR_6g044560 50.526 285 121 5 20 288 285 565 2.42e-73 235
MsG0880043567.01.T01 MTR_6g022520 46.462 325 128 8 1 289 1 315 8.61e-70 219
MsG0880043567.01.T01 MTR_1g066830 43.963 323 134 10 1 286 74 386 1.06e-68 218
MsG0880043567.01.T01 MTR_1089s0010 46.417 321 127 10 1 289 74 381 1.16e-68 218
MsG0880043567.01.T01 MTR_5g058100 45.988 324 128 12 1 289 75 386 3.59e-65 209
MsG0880043567.01.T01 MTR_6g022360 44.561 285 119 5 37 286 127 407 8.88e-65 209
MsG0880043567.01.T01 MTR_5g073420 43.125 320 130 11 1 286 78 379 1.41e-62 202
MsG0880043567.01.T01 MTR_6g040270 43.987 316 136 8 1 285 74 379 2.67e-62 201
MsG0880043567.01.T01 MTR_5g058000 42.633 319 136 8 1 288 74 376 1.60e-59 194
MsG0880043567.01.T01 MTR_1g085120 46.977 215 86 5 1 192 245 454 4.04e-48 167
MsG0880043567.01.T01 MTR_6g033095 45.000 180 72 2 72 251 32 184 2.98e-38 134
MsG0880043567.01.T01 MTR_5g007410 35.514 321 153 12 1 279 92 400 1.80e-34 130
MsG0880043567.01.T01 MTR_1g108820 37.966 295 125 13 39 285 100 384 2.05e-34 129
MsG0880043567.01.T01 MTR_5g045170 35.640 289 144 10 36 286 106 390 1.11e-33 127
MsG0880043567.01.T01 MTR_7g026500 34.337 332 155 13 2 287 81 395 1.18e-33 127
MsG0880043567.01.T01 MTR_3g071850 34.347 329 155 12 1 283 92 405 4.00e-33 129
MsG0880043567.01.T01 MTR_5g045510 35.806 310 161 10 1 287 78 372 4.98e-33 125
MsG0880043567.01.T01 MTR_1g108800 35.374 294 135 8 34 287 64 342 2.07e-32 122
MsG0880043567.01.T01 MTR_6g045333 34.663 326 164 10 1 286 129 445 2.68e-32 124
MsG0880043567.01.T01 MTR_0009s0080 34.967 306 154 9 6 273 88 386 5.85e-32 123
MsG0880043567.01.T01 MTR_5g033200 49.315 146 57 4 145 278 33 173 8.73e-31 114
MsG0880043567.01.T01 MTR_5g031970 33.557 298 165 8 6 284 70 353 1.51e-30 117
MsG0880043567.01.T01 MTR_5g061680 37.931 232 116 7 1 219 78 294 2.53e-30 116
MsG0880043567.01.T01 MTR_5g076150 39.462 223 74 9 49 216 11 227 1.33e-29 112
MsG0880043567.01.T01 MTR_5g039490 31.935 310 169 9 1 287 86 376 4.59e-29 114
MsG0880043567.01.T01 MTR_3g095600 34.629 283 124 12 1 281 72 295 2.32e-28 110
MsG0880043567.01.T01 MTR_2g036470 33.642 324 169 11 1 286 80 395 8.88e-28 111
MsG0880043567.01.T01 MTR_5g073370 35.249 261 124 12 64 289 132 382 1.02e-26 108
MsG0880043567.01.T01 MTR_5g039470 32.986 288 141 9 1 247 51 327 1.09e-26 107
MsG0880043567.01.T01 MTR_1377s0010 49.219 128 49 3 143 258 11 134 1.15e-26 102
MsG0880043567.01.T01 MTR_3g095630 43.836 146 63 5 143 276 36 174 3.03e-25 99.8
MsG0880043567.01.T01 MTR_6g022410 53.763 93 40 1 194 286 17 106 3.45e-24 94.7
MsG0880043567.01.T01 MTR_5g063950 30.314 287 157 9 35 284 79 359 8.01e-24 99.8
MsG0880043567.01.T01 MTR_5g039450 29.102 323 151 11 1 284 72 355 2.60e-21 92.8
MsG0880043567.01.T01 MTR_7g056287 32.753 287 146 11 34 286 98 371 1.24e-20 90.9
MsG0880043567.01.T01 MTR_7g056277 32.404 287 147 9 34 286 354 627 2.73e-20 91.3
MsG0880043567.01.T01 MTR_5g024060 37.576 165 83 4 130 280 43 201 5.60e-19 84.7
MsG0880043567.01.T01 MTR_5g008950 28.682 258 139 7 70 292 123 370 6.34e-19 86.3
MsG0880043567.01.T01 MTR_5g054920 35.417 192 87 8 112 271 7 193 1.40e-18 82.0
MsG0880043567.01.T01 MTR_7g032380 29.430 316 160 14 1 286 73 355 1.52e-18 84.7
MsG0880043567.01.T01 MTR_7g034120 30.196 255 125 8 70 288 72 309 1.83e-18 84.0
MsG0880043567.01.T01 MTR_7g088260 29.520 271 151 9 50 286 197 461 2.09e-18 85.1
MsG0880043567.01.T01 MTR_7g098480 31.128 257 126 8 69 286 144 388 7.16e-18 83.6
MsG0880043567.01.T01 MTR_3g087260 28.315 279 156 9 46 286 184 456 7.67e-18 83.6
MsG0880043567.01.T01 MTR_5g058350 49.451 91 45 1 38 127 79 169 6.42e-17 77.4
MsG0880043567.01.T01 MTR_3g467400 28.102 274 131 9 41 278 122 365 6.98e-17 80.1
MsG0880043567.01.T01 MTR_2g008320 27.451 306 163 10 33 290 136 430 3.04e-16 79.0
MsG0880043567.01.T01 MTR_3g107100 31.034 261 131 8 69 285 141 396 4.12e-16 78.2
MsG0880043567.01.T01 MTR_7g075820 29.825 228 116 8 90 285 177 392 4.38e-16 78.2
MsG0880043567.01.T01 MTR_2g008310 29.845 258 134 9 69 290 128 374 5.17e-16 77.8
MsG0880043567.01.T01 MTR_7g083740 29.915 234 120 7 88 286 142 366 5.31e-16 77.8
MsG0880043567.01.T01 MTR_2g005990 28.333 300 150 11 38 285 107 393 1.51e-15 76.6
MsG0880043567.01.T01 MTR_1g107385 28.571 266 132 11 64 285 170 421 7.17e-15 74.7
MsG0880043567.01.T01 MTR_1g108820 35.938 192 78 9 39 192 100 284 7.30e-15 74.3
MsG0880043567.01.T01 MTR_7g007340 28.727 275 135 10 58 289 99 355 1.07e-14 73.9
MsG0880043567.01.T01 MTR_2g007400 28.358 268 125 11 69 287 154 403 1.72e-14 73.6
MsG0880043567.01.T01 MTR_7g114710 27.070 314 183 11 8 286 61 363 2.60e-14 72.8
MsG0880043567.01.T01 MTR_2g007090 30.876 217 121 8 88 286 88 293 3.05e-14 72.0
MsG0880043567.01.T01 MTR_5g073340 32.365 241 104 12 28 220 71 300 4.33e-14 71.6
MsG0880043567.01.T01 MTR_0543s0010 26.102 295 167 11 30 286 168 449 5.79e-14 72.0
MsG0880043567.01.T01 MTR_3g099830 28.517 263 125 11 69 285 127 372 1.20e-13 70.9
MsG0880043567.01.T01 MTR_5g008920 24.573 293 183 8 29 289 97 383 1.50e-13 70.5
MsG0880043567.01.T01 MTR_7g033990 27.027 222 117 7 88 276 163 372 2.72e-13 70.1
MsG0880043567.01.T01 MTR_3g105060 28.112 249 144 6 62 286 135 372 5.18e-13 68.9
MsG0880043567.01.T01 MTR_7g056020 28.462 260 133 10 57 275 115 362 5.93e-13 69.3
MsG0880043567.01.T01 MTR_7g033915 30.323 155 86 3 145 286 219 364 6.52e-13 68.6
MsG0880043567.01.T01 MTR_5g073400 42.593 108 50 4 38 139 26 127 7.79e-13 65.1
MsG0880043567.01.T01 MTR_5g044790 46.429 84 38 2 203 284 359 437 1.12e-12 68.2
MsG0880043567.01.T01 MTR_0492s0020 27.160 243 133 9 46 252 184 418 3.17e-12 67.0
MsG0880043567.01.T01 MTR_7g022105 28.322 286 149 9 32 272 137 411 1.14e-11 65.1
MsG0880043567.01.T01 MTR_5g012840 28.692 237 112 10 49 265 97 296 1.28e-11 64.7
MsG0880043567.01.T01 MTR_6g029350 30.476 210 94 9 112 285 3 196 2.40e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATCTTGAAGATATTAT+TGG 0.212861 8:+26905725 None:intergenic
ACACATTCAAGAACCGAAAT+TGG 0.215106 8:+26905932 None:intergenic
GTCTTGGCTCGTTTCATTGC+TGG 0.217875 8:-26906221 MsG0880043567.01.T01:CDS
CGTCGCATCTGTTGGTTTGA+TGG 0.249484 8:-26907484 MsG0880043567.01.T01:CDS
TTTCATTTCCAACATATAAA+TGG 0.295098 8:+26907302 None:intergenic
ATTGATCTATTGTTTGGTCT+TGG 0.330875 8:-26906237 MsG0880043567.01.T01:CDS
ATTCATATTGATCTATTGTT+TGG 0.338203 8:-26906243 MsG0880043567.01.T01:CDS
GGAATGGAAGTGCCCAATTT+CGG 0.393283 8:-26905945 MsG0880043567.01.T01:CDS
TCATGTTTCTCATAATAGAT+AGG 0.400171 8:+26907157 None:intergenic
TCTTGGCTCGTTTCATTGCT+GGG 0.403637 8:-26906220 MsG0880043567.01.T01:CDS
TTCAACACGACGTAGCTTTG+CGG 0.417285 8:+26907405 None:intergenic
TCAAGATGTAAACTTTCATT+CGG 0.426534 8:-26905713 MsG0880043567.01.T01:CDS
GGGCACTTCCATTCCTTCGA+TGG 0.434341 8:+26905953 None:intergenic
GGCTCGTTTCATTGCTGGGA+TGG 0.434883 8:-26906216 MsG0880043567.01.T01:CDS
CTTCCATTCCTTCGATGGGC+CGG 0.438787 8:+26905958 None:intergenic
AAACTTGACCATTTATATGT+TGG 0.439864 8:-26907310 MsG0880043567.01.T01:CDS
GTAAAATAGTACATGATTTG+AGG 0.440754 8:+26905900 None:intergenic
GGCACTTCCATTCCTTCGAT+GGG 0.450347 8:+26905954 None:intergenic
CACATTCAAGAACCGAAATT+GGG 0.454109 8:+26905933 None:intergenic
GAGAAGAAAGGTTTAAACTA+AGG 0.454906 8:-26907120 MsG0880043567.01.T01:CDS
TGGTGTTGTTAGTATTGAAA+AGG 0.480977 8:-26906196 MsG0880043567.01.T01:intron
AATAAACTGATGTCAAATGC+AGG 0.491158 8:+26907248 None:intergenic
CTTTGACAGTGGAGGAAGAC+CGG 0.504077 8:-26905977 MsG0880043567.01.T01:intron
GGTCAAGTTTGAGAATAACT+AGG 0.506189 8:+26907323 None:intergenic
AACATGCAAATCCTCTAGGT+TGG 0.509162 8:+26907183 None:intergenic
ACATGCAAATCCTCTAGGTT+GGG 0.514316 8:+26907184 None:intergenic
AAAACAATGCACGAGAAGAA+AGG 0.522398 8:-26907132 MsG0880043567.01.T01:CDS
AGACCGGCCCATCGAAGGAA+TGG 0.526549 8:-26905961 MsG0880043567.01.T01:CDS
CAAAAGATCCACCGAGCAAG+AGG 0.527272 8:-26906301 MsG0880043567.01.T01:CDS
AGTTTGAGAATAACTAGGGT+TGG 0.528200 8:+26907328 None:intergenic
GTCAAGTTTGAGAATAACTA+GGG 0.530461 8:+26907324 None:intergenic
TTTGAAAGAATCCTCTTGCT+CGG 0.539331 8:+26906290 None:intergenic
AGAAGAAAGGTTTAAACTAA+GGG 0.546592 8:-26907119 MsG0880043567.01.T01:intron
TGAAGATATTATTGGACAAG+AGG 0.547401 8:+26905733 None:intergenic
TTCTGTTTGTCCCAACCTAG+AGG 0.561031 8:-26907194 MsG0880043567.01.T01:CDS
GATGAACATGCAAATCCTCT+AGG 0.565891 8:+26907179 None:intergenic
TCTCTCTGTATTGCCACACT+TGG 0.566537 8:-26907372 MsG0880043567.01.T01:CDS
GAGGAAGACCGGCCCATCGA+AGG 0.574198 8:-26905966 MsG0880043567.01.T01:CDS
AAATAATAGGCTTCCAAGTG+TGG 0.574375 8:+26907359 None:intergenic
ATAAACTGATGTCAAATGCA+GGG 0.610022 8:+26907249 None:intergenic
GAAAGAATCCTCTTGCTCGG+TGG 0.617441 8:+26906293 None:intergenic
CTTTGCGGCTTCAATCCATG+AGG 0.721650 8:+26907420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTAATTAGTATATTG+CGG + Chr8:26906291-26906310 None:intergenic 10.0%
!!! TTTATGATTTAACTTTATAA+TGG - Chr8:26907155-26907174 MsG0880043567.01.T01:CDS 10.0%
!!! TTTTAATTTGATTTTAATGT+TGG - Chr8:26906612-26906631 MsG0880043567.01.T01:intron 10.0%
!! CTAATTAAATATATATCACT+TGG - Chr8:26906298-26906317 MsG0880043567.01.T01:CDS 15.0%
!! TGAAAATAAAATTGTAATGT+TGG - Chr8:26906548-26906567 MsG0880043567.01.T01:intron 15.0%
!!! AATAAAACAGTTTTAGAAAA+AGG - Chr8:26907447-26907466 MsG0880043567.01.T01:CDS 15.0%
!!! ATTGTTTATTAGTATTGAAA+AGG - Chr8:26907055-26907074 MsG0880043567.01.T01:intron 15.0%
!!! TTAGAGAATGATAAATTTTT+TGG - Chr8:26906434-26906453 MsG0880043567.01.T01:intron 15.0%
!!! TTTTGCATTTATTACAAAAT+AGG - Chr8:26906459-26906478 MsG0880043567.01.T01:intron 15.0%
!! AAATAAATAAGTATGCAGTT+TGG + Chr8:26906748-26906767 None:intergenic 20.0%
!! ATTCATATTGATCTATTGTT+TGG - Chr8:26906980-26906999 MsG0880043567.01.T01:intron 20.0%
!! CCAAATTCTTTATATTGAAA+AGG - Chr8:26907086-26907105 MsG0880043567.01.T01:intron 20.0%
!! GTTGGAAAAAGAAAAATAAT+AGG + Chr8:26905880-26905899 None:intergenic 20.0%
!! TTACATCTTGAAGATATTAT+TGG + Chr8:26907501-26907520 None:intergenic 20.0%
!! TTTAGAAAAAGGTAAGATTA+TGG - Chr8:26907458-26907477 MsG0880043567.01.T01:CDS 20.0%
!! TTTCATTTCCAACATATAAA+TGG + Chr8:26905924-26905943 None:intergenic 20.0%
!!! CCTTTTCAATATAAAGAATT+TGG + Chr8:26907089-26907108 None:intergenic 20.0%
!!! TTCTAAAACTGTTTTATTTG+AGG + Chr8:26907445-26907464 None:intergenic 20.0%
!!! TTTTTGTTTGCGTTTAAATT+TGG - Chr8:26906487-26906506 MsG0880043567.01.T01:intron 20.0%
! AAACTTGACCATTTATATGT+TGG - Chr8:26905913-26905932 MsG0880043567.01.T01:CDS 25.0%
! AGAAGAAAGGTTTAAACTAA+GGG - Chr8:26906104-26906123 MsG0880043567.01.T01:intron 25.0%
! GTAAAATAGTACATGATTTG+AGG + Chr8:26907326-26907345 None:intergenic 25.0%
! TCAAGATGTAAACTTTCATT+CGG - Chr8:26907510-26907529 MsG0880043567.01.T01:CDS 25.0%
! TCATGTTTCTCATAATAGAT+AGG + Chr8:26906069-26906088 None:intergenic 25.0%
! TTAATTAGTATATTGCGGTT+TGG + Chr8:26906286-26906305 None:intergenic 25.0%
!! TATTAGTATTGAAAAGGTCT+TGG - Chr8:26907061-26907080 MsG0880043567.01.T01:intron 25.0%
!! TATTTTACACTTAGATGGAT+CGG - Chr8:26907338-26907357 MsG0880043567.01.T01:CDS 25.0%
!! TGTACTATTTTACACTTAGA+TGG - Chr8:26907333-26907352 MsG0880043567.01.T01:CDS 25.0%
!! TTGTTAGTATTGAAAAGGTT+TGG - Chr8:26907032-26907051 MsG0880043567.01.T01:intron 25.0%
!!! CTGCATACTTATTTATTTTG+CGG - Chr8:26906750-26906769 MsG0880043567.01.T01:intron 25.0%
!!! TACTTATTTATTTTGCGGTT+TGG - Chr8:26906755-26906774 MsG0880043567.01.T01:intron 25.0%
AATAAACTGATGTCAAATGC+AGG + Chr8:26905978-26905997 None:intergenic 30.0%
AATAAGTATGCAGTTTGGTT+TGG + Chr8:26906743-26906762 None:intergenic 30.0%
ATAAACTGATGTCAAATGCA+GGG + Chr8:26905977-26905996 None:intergenic 30.0%
ATTGATCTATTGTTTGGTCT+TGG - Chr8:26906986-26907005 MsG0880043567.01.T01:intron 30.0%
CAATACTCATAGAAACTCAA+TGG - Chr8:26906323-26906342 MsG0880043567.01.T01:CDS 30.0%
CATTGAGTTTCTATGAGTAT+TGG + Chr8:26906325-26906344 None:intergenic 30.0%
GAGAAGAAAGGTTTAAACTA+AGG - Chr8:26906103-26906122 MsG0880043567.01.T01:intron 30.0%
GTCAAGTTTGAGAATAACTA+GGG + Chr8:26905902-26905921 None:intergenic 30.0%
TAAAGCGAGTATCAATTCAA+TGG - Chr8:26906853-26906872 MsG0880043567.01.T01:intron 30.0%
TAAATTTGGTCTACGTAGTT+GGG - Chr8:26906501-26906520 MsG0880043567.01.T01:intron 30.0%
TGAAGATATTATTGGACAAG+AGG + Chr8:26907493-26907512 None:intergenic 30.0%
TTAAATTTGGTCTACGTAGT+TGG - Chr8:26906500-26906519 MsG0880043567.01.T01:intron 30.0%
!! TGGTGTTGTTAGTATTGAAA+AGG - Chr8:26907027-26907046 MsG0880043567.01.T01:intron 30.0%
!!! AAAAGTTTTGAGGGTTTTGT+TGG + Chr8:26905719-26905738 None:intergenic 30.0%
!!! CAATTTTTTACCAAACCACA+TGG - Chr8:26906223-26906242 MsG0880043567.01.T01:CDS 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG + Chr8:26906139-26906158 None:intergenic 30.0%
AAAACAATGCACGAGAAGAA+AGG - Chr8:26906091-26906110 MsG0880043567.01.T01:intron 35.0%
AAATAATAGGCTTCCAAGTG+TGG + Chr8:26905867-26905886 None:intergenic 35.0%
AACATTGTTGGGAACATTGT+TGG - Chr8:26906524-26906543 MsG0880043567.01.T01:intron 35.0%
ACACATTCAAGAACCGAAAT+TGG + Chr8:26907294-26907313 None:intergenic 35.0%
AGTTTGAGAATAACTAGGGT+TGG + Chr8:26905898-26905917 None:intergenic 35.0%
CACATTCAAGAACCGAAATT+GGG + Chr8:26907293-26907312 None:intergenic 35.0%
CGCTTTAACCAATTTAGACA+GGG + Chr8:26906840-26906859 None:intergenic 35.0%
GAATATATCCGAACCAAATG+CGG + Chr8:26906199-26906218 None:intergenic 35.0%
GGTCAAGTTTGAGAATAACT+AGG + Chr8:26905903-26905922 None:intergenic 35.0%
TCGCTTTAACCAATTTAGAC+AGG + Chr8:26906841-26906860 None:intergenic 35.0%
TTTGAAAGAATCCTCTTGCT+CGG + Chr8:26906936-26906955 None:intergenic 35.0%
! TCAGTTTGCGGTTTTTCTAT+TGG + Chr8:26906149-26906168 None:intergenic 35.0%
! TTGCGGTTTTTCTATTGGAT+TGG + Chr8:26906144-26906163 None:intergenic 35.0%
! TTTTACCAAACCACATGGTT+TGG - Chr8:26906228-26906247 MsG0880043567.01.T01:CDS 35.0%
!! GCATTTGGTTCGGATATATT+CGG - Chr8:26906198-26906217 MsG0880043567.01.T01:CDS 35.0%
!! GTTTTGTTGGTTGAATATCG+AGG + Chr8:26905706-26905725 None:intergenic 35.0%
!! TAGTATATTGCGGTTTGGTT+CGG + Chr8:26906281-26906300 None:intergenic 35.0%
AAACCGCAAAAAACCGCATT+TGG - Chr8:26906183-26906202 MsG0880043567.01.T01:intron 40.0%
AACATGCAAATCCTCTAGGT+TGG + Chr8:26906043-26906062 None:intergenic 40.0%
AACCAATTTAGACAGGGTCA+AGG + Chr8:26906834-26906853 None:intergenic 40.0%
ACATGCAAATCCTCTAGGTT+GGG + Chr8:26906042-26906061 None:intergenic 40.0%
ACCAATTTAGACAGGGTCAA+GGG + Chr8:26906833-26906852 None:intergenic 40.0%
ACGTAGTTGGGAACATTGTT+GGG - Chr8:26906513-26906532 MsG0880043567.01.T01:intron 40.0%
CAAACCAAACCAAACCAATG+CGG + Chr8:26906690-26906709 None:intergenic 40.0%
GATGAACATGCAAATCCTCT+AGG + Chr8:26906047-26906066 None:intergenic 40.0%
GCAAAAAACCGCATTTGGTT+CGG - Chr8:26906188-26906207 MsG0880043567.01.T01:intron 40.0%
GCGAGTATCAATTCAATGGA+CGG - Chr8:26906857-26906876 MsG0880043567.01.T01:intron 40.0%
GTAGTTAGCGAGATAAGACT+TGG - Chr8:26907180-26907199 MsG0880043567.01.T01:CDS 40.0%
TACGTAGTTGGGAACATTGT+TGG - Chr8:26906512-26906531 MsG0880043567.01.T01:intron 40.0%
! AAACTTTTCGTCGCATCTGT+TGG - Chr8:26905731-26905750 MsG0880043567.01.T01:CDS 40.0%
! AGATGCGACGAAAAGTTTTG+AGG + Chr8:26905729-26905748 None:intergenic 40.0%
! ATTTTTGACCCCTTTGACAG+TGG - Chr8:26907235-26907254 MsG0880043567.01.T01:CDS 40.0%
!! ACATGGTTTGGTTTGGTTTG+CGG - Chr8:26906240-26906259 MsG0880043567.01.T01:CDS 40.0%
!! GATGCGACGAAAAGTTTTGA+GGG + Chr8:26905728-26905747 None:intergenic 40.0%
!! GTATGCAGTTTGGTTTGGTT+CGG + Chr8:26906738-26906757 None:intergenic 40.0%
!! GTTTGGATTGGTTCAGTTTG+CGG + Chr8:26906161-26906180 None:intergenic 40.0%
!!! AAATGCAGGGTTTTGAGTGA+TGG + Chr8:26905964-26905983 None:intergenic 40.0%
!!! AATGCGGTTTTTTGCGGTTT+CGG + Chr8:26906183-26906202 None:intergenic 40.0%
!!! GAACCAAATGCGGTTTTTTG+CGG + Chr8:26906189-26906208 None:intergenic 40.0%
ACCCTTGACCCTGTCTAAAT+TGG - Chr8:26906829-26906848 MsG0880043567.01.T01:intron 45.0%
CAAACCAAACCAATGCGGTT+TGG + Chr8:26906685-26906704 None:intergenic 45.0%
CCAAACCAAACCATGTGGTT+TGG + Chr8:26906236-26906255 None:intergenic 45.0%
GCAAACCAAACCAAACCATG+TGG + Chr8:26906241-26906260 None:intergenic 45.0%
TCTCTCTGTATTGCCACACT+TGG - Chr8:26905851-26905870 MsG0880043567.01.T01:CDS 45.0%
TTCTGTTTGTCCCAACCTAG+AGG - Chr8:26906029-26906048 MsG0880043567.01.T01:intron 45.0%
! CAAACCAATGCGGTTTGGAT+TGG + Chr8:26906680-26906699 None:intergenic 45.0%
! CAATGCGGTTTGGATTGGAT+CGG + Chr8:26906675-26906694 None:intergenic 45.0%
! TCATCGAACGTTTTGCCTCA+TGG - Chr8:26905788-26905807 MsG0880043567.01.T01:CDS 45.0%
! TCTTGGCTCGTTTCATTGCT+GGG - Chr8:26907003-26907022 MsG0880043567.01.T01:intron 45.0%
! TTCAACACGACGTAGCTTTG+CGG + Chr8:26905821-26905840 None:intergenic 45.0%
! TTGGATTGGATCGGTTGGTA+CGG + Chr8:26906666-26906685 None:intergenic 45.0%
!! AGACAGGGTCAAGGGTATTA+GGG + Chr8:26906825-26906844 None:intergenic 45.0%
!! ATATTGCGGTTTGGTTCGGT+TGG + Chr8:26906277-26906296 None:intergenic 45.0%
!! CAAACCGCATTGGTTTGGTT+TGG - Chr8:26906683-26906702 MsG0880043567.01.T01:intron 45.0%
!! CAATCCAAACCGCATTGGTT+TGG - Chr8:26906678-26906697 MsG0880043567.01.T01:intron 45.0%
!! CCAAACCACATGGTTTGGTT+TGG - Chr8:26906233-26906252 MsG0880043567.01.T01:CDS 45.0%
!! CGCATTGGTTTGGTTTGGTT+TGG - Chr8:26906688-26906707 MsG0880043567.01.T01:intron 45.0%
!! GGAATGGAAGTGCCCAATTT+CGG - Chr8:26907278-26907297 MsG0880043567.01.T01:CDS 45.0%
!! TAGACAGGGTCAAGGGTATT+AGG + Chr8:26906826-26906845 None:intergenic 45.0%
!! TTTGCGGTTTCGGTTTGGAT+TGG + Chr8:26906173-26906192 None:intergenic 45.0%
!!! GGTTTTTTGCGGTTTCGGTT+TGG + Chr8:26906178-26906197 None:intergenic 45.0%
CAAAAGATCCACCGAGCAAG+AGG - Chr8:26906922-26906941 MsG0880043567.01.T01:intron 50.0%
CGATCCAATCCAAACCGCAT+TGG - Chr8:26906673-26906692 MsG0880043567.01.T01:intron 50.0%
CTTTGACAGTGGAGGAAGAC+CGG - Chr8:26907246-26907265 MsG0880043567.01.T01:CDS 50.0%
CTTTGCGGCTTCAATCCATG+AGG + Chr8:26905806-26905825 None:intergenic 50.0%
GAAAGAATCCTCTTGCTCGG+TGG + Chr8:26906933-26906952 None:intergenic 50.0%
GGCACTTCCATTCCTTCGAT+GGG + Chr8:26907272-26907291 None:intergenic 50.0%
GGTCTTCCTCCACTGTCAAA+GGG + Chr8:26907247-26907266 None:intergenic 50.0%
GTCTTCCTCCACTGTCAAAG+GGG + Chr8:26907246-26907265 None:intergenic 50.0%
TTTGACCCCTTTGACAGTGG+AGG - Chr8:26907238-26907257 MsG0880043567.01.T01:CDS 50.0%
! GTCTTGGCTCGTTTCATTGC+TGG - Chr8:26907002-26907021 MsG0880043567.01.T01:intron 50.0%
!! CGTCGCATCTGTTGGTTTGA+TGG - Chr8:26905739-26905758 MsG0880043567.01.T01:CDS 50.0%
!! GACAGGGTCAAGGGTATTAG+GGG + Chr8:26906824-26906843 None:intergenic 50.0%
!!! TGCGGTTTGGTTCGGTTTTG+AGG + Chr8:26906792-26906811 None:intergenic 50.0%
CGGTCTTCCTCCACTGTCAA+AGG + Chr8:26907248-26907267 None:intergenic 55.0%
CTTCCATTCCTTCGATGGGC+CGG + Chr8:26907268-26907287 None:intergenic 55.0%
GGCTCGTTTCATTGCTGGGA+TGG - Chr8:26907007-26907026 MsG0880043567.01.T01:intron 55.0%
GGGCACTTCCATTCCTTCGA+TGG + Chr8:26907273-26907292 None:intergenic 55.0%
! GCGGTTTGGATTGGATCGGT+TGG + Chr8:26906671-26906690 None:intergenic 55.0%
!! AAGGGTATTAGGGGTGTCCG+CGG + Chr8:26906815-26906834 None:intergenic 55.0%
AACCGAACCAAACCGCACCG+CGG - Chr8:26906795-26906814 MsG0880043567.01.T01:intron 60.0%
AGACCGGCCCATCGAAGGAA+TGG - Chr8:26907262-26907281 MsG0880043567.01.T01:CDS 60.0%
!! TATTAGGGGTGTCCGCGGTG+CGG + Chr8:26906810-26906829 None:intergenic 60.0%
GAGGAAGACCGGCCCATCGA+AGG - Chr8:26907257-26907276 MsG0880043567.01.T01:CDS 65.0%
!! GTCCGCGGTGCGGTTTGGTT+CGG + Chr8:26906800-26906819 None:intergenic 65.0%
! GGGGTGTCCGCGGTGCGGTT+TGG + Chr8:26906805-26906824 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 26905694 26907551 26905694 ID=MsG0880043567.01;Name=MsG0880043567.01
Chr8 mRNA 26905694 26907551 26905694 ID=MsG0880043567.01.T01;Parent=MsG0880043567.01;Name=MsG0880043567.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|292
Chr8 exon 26907120 26907551 26907120 ID=MsG0880043567.01.T01:exon:14591;Parent=MsG0880043567.01.T01
Chr8 exon 26906197 26906346 26906197 ID=MsG0880043567.01.T01:exon:14590;Parent=MsG0880043567.01.T01
Chr8 exon 26905694 26905990 26905694 ID=MsG0880043567.01.T01:exon:14589;Parent=MsG0880043567.01.T01
Chr8 CDS 26907120 26907551 26907120 ID=MsG0880043567.01.T01:cds;Parent=MsG0880043567.01.T01
Chr8 CDS 26906197 26906346 26906197 ID=MsG0880043567.01.T01:cds;Parent=MsG0880043567.01.T01
Chr8 CDS 26905694 26905990 26905694 ID=MsG0880043567.01.T01:cds;Parent=MsG0880043567.01.T01
Gene Sequence

>MsG0880043567.01.T01

ATGCTCTCTCCTCGATATTCAACCAACAAAACCCTCAAAACTTTTCGTCGCATCTGTTGGTTTGATGGAGTCGTCATGCGTGATCGTCAATTCTTCATCGAACGTTTTGCCTCATGGATTGAAGCCGCAAAGCTACGTCGTGTTGAAGAATTTCAACTCTCTCTGTATTGCCACACTTGGAAGCCTATTATTTTTCTTTTTCCAACCCTAGTTATTCTCAAACTTGACCATTTATATGTTGGAAATGAAACTGCAAGTCATAATCTTCCATCACTCAAAACCCTGCATTTGACATCAGTTTATTTTGAAAATCACAATGAATTCATAAATTTTCTTTCTGTTTGTCCCAACCTAGAGGATTTGCATGTTCATCCTATCTATTATGAGAAACATGATGAAAACAATGCACGAGAAGAAAGGTTTAAACTAAGGAATGTCGAGTTTCTACGTGTAATCAAAAGATCCACCGAGCAAGAGGATTCTTTCAAAGTCGCTTCAGTGTTTCAAAACTTAATTCATATTGATCTATTGTTTGGTCTTGGCTCGTTTCATTGCTGGGATGGTGTTGTTAGTATTGAAAAGTGGAGGAAGACCGGCCCATCGAAGGAATGGAAGTGCCCAATTTCGGTTCTTGAATGTGTTTCGTCTCACCTCAAATCATGTACTATTTTACACTTAGATGGATCGGCAAGTGATCTTAAATTTGCAACTTATATTTTGCAAAATGCAAGACTTTTACAAGACATGACAATCAGATTTGATATTGACTCCTCAAATAAAACAGTTTTAGAAAAAGGTAAGATTATGGAAGAATTGTCCTCTTGTCCAATAATATCTTCAAGATGTAAACTTTCATTCGGCTTTAAGTGTAGTGAGTAG

Protein sequence

>MsG0880043567.01.T01

MLSPRYSTNKTLKTFRRICWFDGVVMRDRQFFIERFASWIEAAKLRRVEEFQLSLYCHTWKPIIFLFPTLVILKLDHLYVGNETASHNLPSLKTLHLTSVYFENHNEFINFLSVCPNLEDLHVHPIYYEKHDENNAREERFKLRNVEFLRVIKRSTEQEDSFKVASVFQNLIHIDLLFGLGSFHCWDGVVSIEKWRKTGPSKEWKCPISVLECVSSHLKSCTILHLDGSASDLKFATYILQNARLLQDMTIRFDIDSSNKTVLEKGKIMEELSSCPIISSRCKLSFGFKCSE*