AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028520.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028520.01.T01 MTR_1g066830 60.377 265 93 3 1 253 122 386 2.05e-105 311
MsG0580028520.01.T01 MTR_5g058100 59.160 262 98 4 1 253 122 383 3.68e-95 285
MsG0580028520.01.T01 MTR_5g073420 57.540 252 99 4 6 254 134 380 7.78e-92 276
MsG0580028520.01.T01 MTR_5g058000 56.420 257 105 3 1 253 121 374 1.08e-85 260
MsG0580028520.01.T01 MTR_1089s0010 53.175 252 114 3 7 254 128 379 9.19e-83 253
MsG0580028520.01.T01 MTR_6g040270 50.769 260 122 3 1 254 122 381 1.20e-81 250
MsG0580028520.01.T01 MTR_4g039440 52.453 265 111 8 5 254 148 412 5.36e-80 247
MsG0580028520.01.T01 MTR_1g085120 52.091 263 109 7 6 254 212 471 1.78e-76 239
MsG0580028520.01.T01 MTR_1g085120 52.091 263 109 7 6 254 287 546 6.98e-76 240
MsG0580028520.01.T01 MTR_6g022520 52.852 263 110 7 5 254 52 313 1.65e-72 224
MsG0580028520.01.T01 MTR_6g011460 50.584 257 120 6 5 254 165 421 4.88e-71 224
MsG0580028520.01.T01 MTR_7g055943 49.057 265 118 9 5 254 159 421 1.68e-67 215
MsG0580028520.01.T01 MTR_6g022360 46.923 260 126 7 5 253 149 407 2.80e-66 211
MsG0580028520.01.T01 MTR_6g022500 47.893 261 125 7 5 256 220 478 1.12e-65 211
MsG0580028520.01.T01 MTR_5g076150 52.133 211 75 5 1 185 17 227 5.88e-62 195
MsG0580028520.01.T01 MTR_3g095630 53.977 176 76 4 73 245 3 176 7.53e-54 172
MsG0580028520.01.T01 MTR_1377s0010 63.433 134 48 1 95 227 1 134 1.07e-53 170
MsG0580028520.01.T01 MTR_7g026500 41.353 266 133 8 4 255 140 396 1.41e-53 178
MsG0580028520.01.T01 MTR_3g095600 44.177 249 82 7 2 247 100 294 3.79e-53 174
MsG0580028520.01.T01 MTR_5g033200 52.727 165 75 2 86 247 11 175 1.05e-51 167
MsG0580028520.01.T01 MTR_1g108820 42.222 270 131 8 3 252 120 384 9.43e-51 171
MsG0580028520.01.T01 MTR_5g061680 50.000 192 68 5 2 188 126 294 1.96e-49 165
MsG0580028520.01.T01 MTR_5g007410 39.847 261 138 8 3 246 142 400 1.40e-48 166
MsG0580028520.01.T01 MTR_1g108800 46.008 263 116 12 5 252 89 340 1.99e-48 163
MsG0580028520.01.T01 MTR_6g044572 41.762 261 121 8 5 254 148 388 1.38e-47 162
MsG0580028520.01.T01 MTR_6g044560 41.762 261 121 8 5 254 324 564 6.49e-46 161
MsG0580028520.01.T01 MTR_5g045170 39.405 269 143 8 3 256 130 393 5.40e-45 155
MsG0580028520.01.T01 MTR_6g045333 38.662 269 142 8 4 253 181 445 2.37e-44 155
MsG0580028520.01.T01 MTR_0009s0080 40.000 240 125 7 1 223 133 370 6.66e-43 151
MsG0580028520.01.T01 MTR_1g085120 50.588 170 73 4 6 164 299 468 2.14e-41 147
MsG0580028520.01.T01 MTR_7g056433 38.023 263 148 8 4 254 130 389 8.31e-41 144
MsG0580028520.01.T01 MTR_5g073370 43.534 232 112 10 4 223 126 350 1.84e-40 144
MsG0580028520.01.T01 MTR_3g071850 36.260 262 150 7 1 246 141 401 1.32e-39 146
MsG0580028520.01.T01 MTR_7g034120 36.502 263 145 9 4 254 56 308 1.19e-36 132
MsG0580028520.01.T01 MTR_5g054920 41.111 180 90 5 53 220 2 177 3.23e-36 127
MsG0580028520.01.T01 MTR_1g041245 37.548 261 140 11 10 254 133 386 2.89e-35 130
MsG0580028520.01.T01 MTR_7g098510 36.502 263 151 9 4 254 133 391 5.69e-35 129
MsG0580028520.01.T01 MTR_7g075820 35.206 267 143 9 5 252 137 392 4.34e-34 127
MsG0580028520.01.T01 MTR_5g045510 37.786 262 134 9 3 252 126 370 8.32e-34 125
MsG0580028520.01.T01 MTR_5g039470 38.793 232 122 7 3 216 98 327 1.00e-33 124
MsG0580028520.01.T01 MTR_2g036470 38.077 260 140 10 9 251 138 393 1.67e-33 125
MsG0580028520.01.T01 MTR_2g007450 34.058 276 138 9 9 252 155 418 3.45e-33 125
MsG0580028520.01.T01 MTR_3g107120 33.716 261 152 7 2 251 138 388 4.38e-33 124
MsG0580028520.01.T01 MTR_3g107100 35.556 270 148 8 9 256 135 400 6.55e-33 124
MsG0580028520.01.T01 MTR_5g031970 36.400 250 141 6 4 251 120 353 6.83e-33 123
MsG0580028520.01.T01 MTR_2g007400 32.463 268 143 11 9 252 148 401 1.48e-32 123
MsG0580028520.01.T01 MTR_7g088260 33.712 264 159 9 2 254 204 462 3.17e-32 123
MsG0580028520.01.T01 MTR_7g098570 33.835 266 146 8 4 250 135 389 2.66e-31 120
MsG0580028520.01.T01 MTR_5g063950 33.457 269 141 11 7 251 105 359 5.62e-31 118
MsG0580028520.01.T01 MTR_3g087260 34.082 267 154 8 2 253 197 456 5.78e-31 119
MsG0580028520.01.T01 MTR_7g056277 35.968 253 145 8 10 254 385 628 1.03e-30 120
MsG0580028520.01.T01 MTR_1g107385 33.585 265 143 9 9 252 169 421 1.24e-30 118
MsG0580028520.01.T01 MTR_7g032380 33.597 253 130 8 10 254 134 356 1.71e-30 116
MsG0580028520.01.T01 MTR_3g108150 35.741 263 154 7 4 253 126 386 1.79e-30 117
MsG0580028520.01.T01 MTR_5g039450 34.746 236 127 6 32 251 131 355 1.99e-30 116
MsG0580028520.01.T01 MTR_1g059860 34.201 269 128 10 3 225 59 324 1.27e-29 114
MsG0580028520.01.T01 MTR_0543s0010 35.294 255 151 7 8 253 200 449 1.48e-29 115
MsG0580028520.01.T01 MTR_3g099830 32.584 267 140 9 10 252 122 372 1.62e-29 114
MsG0580028520.01.T01 MTR_7g056287 35.573 253 146 8 10 254 129 372 1.95e-29 114
MsG0580028520.01.T01 MTR_7g098480 32.700 263 157 7 4 253 133 388 2.16e-29 115
MsG0580028520.01.T01 MTR_7g033990 35.398 226 134 7 29 248 158 377 4.56e-29 114
MsG0580028520.01.T01 MTR_7g033915 34.221 263 133 10 4 253 129 364 1.35e-28 111
MsG0580028520.01.T01 MTR_1g053025 33.818 275 147 9 1 251 123 386 2.33e-28 111
MsG0580028520.01.T01 MTR_5g039490 36.364 264 132 10 3 255 139 377 3.06e-28 111
MsG0580028520.01.T01 MTR_7g083740 33.755 237 134 5 31 253 139 366 6.23e-28 110
MsG0580028520.01.T01 MTR_5g083890 33.333 270 141 11 9 251 145 402 7.45e-28 111
MsG0580028520.01.T01 MTR_3g036250 32.157 255 141 9 10 251 128 363 7.72e-28 109
MsG0580028520.01.T01 MTR_3g071790 35.829 187 99 6 46 214 19 202 4.81e-27 103
MsG0580028520.01.T01 MTR_3g105060 30.620 258 161 6 2 254 129 373 9.28e-27 107
MsG0580028520.01.T01 MTR_7g032370 31.641 256 149 9 10 254 112 352 9.45e-27 106
MsG0580028520.01.T01 MTR_3g108560 35.606 264 146 9 8 253 131 388 1.77e-26 106
MsG0580028520.01.T01 MTR_2g007090 33.333 228 126 9 32 253 86 293 2.15e-26 104
MsG0580028520.01.T01 MTR_7g115270 31.599 269 150 9 9 251 139 399 3.13e-26 105
MsG0580028520.01.T01 MTR_5g073340 38.164 207 101 7 4 189 100 300 4.55e-26 103
MsG0580028520.01.T01 MTR_5g012840 34.483 232 104 8 3 225 100 292 1.77e-25 102
MsG0580028520.01.T01 MTR_1g108820 39.011 182 92 4 3 166 120 300 1.79e-25 103
MsG0580028520.01.T01 MTR_4g098590 35.217 230 126 7 9 220 130 354 4.26e-25 102
MsG0580028520.01.T01 MTR_2g008310 32.601 273 148 11 4 254 113 371 7.84e-25 102
MsG0580028520.01.T01 MTR_0492s0020 34.599 237 141 7 8 235 200 431 1.47e-24 101
MsG0580028520.01.T01 MTR_2g007360 30.483 269 145 11 15 252 115 372 1.87e-24 100
MsG0580028520.01.T01 MTR_7g007340 33.955 268 136 13 2 246 100 349 4.07e-24 99.8
MsG0580028520.01.T01 MTR_2g005990 31.618 272 147 9 5 252 137 393 4.58e-24 99.8
MsG0580028520.01.T01 MTR_5g024060 41.270 126 67 3 124 246 79 200 1.13e-23 96.7
MsG0580028520.01.T01 MTR_3g023630 31.532 222 145 4 4 220 126 345 1.18e-23 98.6
MsG0580028520.01.T01 MTR_7g034115 32.800 250 144 11 12 246 135 375 1.84e-23 98.2
MsG0580028520.01.T01 MTR_2g008320 30.935 278 154 11 1 254 164 427 2.27e-23 98.6
MsG0580028520.01.T01 MTR_7g056020 34.000 250 149 8 10 248 124 368 3.90e-23 98.6
MsG0580028520.01.T01 MTR_7g007080 32.319 263 148 12 6 252 129 377 4.53e-23 97.1
MsG0580028520.01.T01 MTR_3g109982 33.600 250 148 8 10 246 224 468 7.39e-23 97.8
MsG0580028520.01.T01 MTR_6g033095 58.025 81 33 1 146 225 109 189 1.36e-22 92.0
MsG0580028520.01.T01 MTR_5g065100 32.432 259 128 11 7 253 125 348 1.68e-22 95.9
MsG0580028520.01.T01 MTR_3g467400 31.298 262 145 9 4 255 132 368 2.18e-22 95.1
MsG0580028520.01.T01 MTR_3g107160 29.528 254 158 7 9 251 137 380 5.97e-22 94.0
MsG0580028520.01.T01 MTR_5g058350 65.217 69 24 0 6 74 101 169 1.48e-21 89.0
MsG0580028520.01.T01 MTR_3g040700 29.439 214 127 6 10 212 166 366 1.10e-20 90.9
MsG0580028520.01.T01 MTR_5g013500 30.453 243 147 9 33 254 124 365 1.22e-20 90.1
MsG0580028520.01.T01 MTR_3g082890 30.175 285 157 11 3 254 209 484 1.68e-20 90.5
MsG0580028520.01.T01 MTR_4g080610 32.218 239 140 9 32 253 123 356 3.31e-20 89.0
MsG0580028520.01.T01 MTR_5g008950 28.346 254 166 6 11 254 118 365 1.26e-19 87.4
MsG0580028520.01.T01 MTR_2g007500 33.180 217 115 9 9 200 124 335 1.47e-19 86.7
MsG0580028520.01.T01 MTR_6g022410 50.000 82 40 1 174 255 28 108 3.41e-19 80.9
MsG0580028520.01.T01 MTR_7g114710 29.084 251 141 8 14 254 141 364 4.27e-19 85.9
MsG0580028520.01.T01 MTR_7g007370 32.895 228 126 8 9 218 97 315 7.67e-19 84.7
MsG0580028520.01.T01 MTR_7g075800 28.571 259 135 10 9 222 144 397 1.36e-18 85.1
MsG0580028520.01.T01 MTR_7g021990 30.677 251 155 7 10 244 168 415 1.68e-18 84.3
MsG0580028520.01.T01 MTR_7g021950 30.677 251 155 7 10 244 168 415 2.10e-18 84.3
MsG0580028520.01.T01 MTR_5g008920 29.344 259 169 8 5 254 128 381 2.26e-18 84.0
MsG0580028520.01.T01 MTR_6g029350 31.050 219 112 9 57 256 2 200 2.61e-18 81.6
MsG0580028520.01.T01 MTR_7g056430 28.571 259 150 11 2 246 120 357 1.40e-17 82.4
MsG0580028520.01.T01 MTR_7g056420 28.571 259 150 11 2 246 120 357 1.88e-17 82.0
MsG0580028520.01.T01 MTR_7g060470 29.008 262 142 10 10 239 129 378 6.23e-17 79.7
MsG0580028520.01.T01 MTR_2g020180 34.815 135 74 4 124 254 91 215 1.45e-16 76.6
MsG0580028520.01.T01 MTR_7g056280 29.577 213 123 7 57 251 367 570 1.72e-16 79.0
MsG0580028520.01.T01 MTR_7g034090 34.756 164 82 8 104 254 161 312 1.59e-15 75.9
MsG0580028520.01.T01 MTR_2g007550 31.156 199 90 7 81 251 153 332 3.21e-15 74.7
MsG0580028520.01.T01 MTR_5g073400 51.724 87 34 3 9 88 53 138 1.89e-14 68.9
MsG0580028520.01.T01 MTR_7g022105 30.952 252 143 10 10 239 169 411 3.08e-14 72.0
MsG0580028520.01.T01 MTR_3g108560 36.047 172 90 7 8 164 131 297 3.26e-12 65.5
MsG0580028520.01.T01 MTR_8g062010 30.216 139 91 4 119 254 295 430 3.77e-12 65.9
MsG0580028520.01.T01 MTR_4g130200 25.000 236 135 7 36 232 139 371 7.75e-12 65.1
MsG0580028520.01.T01 MTR_8g467800 26.848 257 138 8 21 254 224 453 1.72e-11 63.9
MsG0580028520.01.T01 MTR_3g115430 33.628 113 69 3 144 254 17 125 2.10e-11 60.1
MsG0580028520.01.T01 MTR_3g106960 29.379 177 105 7 81 246 23 190 2.79e-11 62.0
MsG0580028520.01.T01 MTR_5g061410 29.762 168 106 5 7 164 102 267 3.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACCAGATTATCCAAAATT+TGG 0.182054 5:+81762196 MsG0580028520.01.T01:CDS
CACAGGAATGCTTGTCAAAT+TGG 0.193310 5:-81761972 None:intergenic
AACCTTGTTCTTGTCCAAAT+TGG 0.220577 5:+81761868 MsG0580028520.01.T01:CDS
TTATCATTTCTTTCTTGGTT+GGG 0.317385 5:+81762027 MsG0580028520.01.T01:CDS
ACCAACATCTCTAACCAATT+TGG 0.318331 5:-81761882 None:intergenic
ATGCATTCAATAGATGGAAT+TGG 0.327291 5:-81762225 None:intergenic
AGTGAATAAGAATCAAATTA+AGG 0.341058 5:+81762386 MsG0580028520.01.T01:CDS
TTTATCATTTCTTTCTTGGT+TGG 0.346515 5:+81762026 MsG0580028520.01.T01:CDS
ACCTTAGAGATAGCATTAAA+AGG 0.351234 5:-81761917 None:intergenic
CATCGCATTCTGCAAAATAT+AGG 0.396124 5:-81762316 None:intergenic
TGCATTCAATAGATGGAATT+GGG 0.405489 5:-81762224 None:intergenic
TCCAAATTGGTTAGAGATGT+TGG 0.410718 5:+81761881 MsG0580028520.01.T01:CDS
ATCTCAAATGTAGGGTATTG+AGG 0.414170 5:-81761727 None:intergenic
ATATAGAGAGTTTGAAGCTT+GGG 0.415277 5:-81762079 None:intergenic
TTTACAGCTAGCTTCTCAAA+TGG 0.431218 5:+81762363 MsG0580028520.01.T01:CDS
GACGAAATGCATTCAATAGA+TGG 0.435888 5:-81762231 None:intergenic
AAAGAACAAATCTCAAATGT+AGG 0.439959 5:-81761736 None:intergenic
TCAAACTCTCTATATGAGAA+AGG 0.459567 5:+81762087 MsG0580028520.01.T01:CDS
GGTGAAAATAGTGGGATTCA+AGG 0.474931 5:-81761630 None:intergenic
GTATGCAATTCCTCTAGAAT+AGG 0.478451 5:-81761800 None:intergenic
TCTCAAATGTAGGGTATTGA+GGG 0.480068 5:-81761726 None:intergenic
TTTGAAGCTTGGGACAATGC+TGG 0.481245 5:-81762069 None:intergenic
CTCAAGTTTCAGAACAACTA+GGG 0.498410 5:-81761660 None:intergenic
GTTTGAGAGGTGAAAATAGT+GGG 0.499930 5:-81761638 None:intergenic
GGTTTGAGAGGTGAAAATAG+TGG 0.506186 5:-81761639 None:intergenic
AATTGCATACTTCTCATCCT+AGG 0.509478 5:+81761813 MsG0580028520.01.T01:CDS
TCTCAAGTTTCAGAACAACT+AGG 0.513803 5:-81761661 None:intergenic
TTACATCCCATGGACATCCT+TGG 0.515868 5:-81762426 None:intergenic
CATATAGAGAGTTTGAAGCT+TGG 0.522189 5:-81762080 None:intergenic
AAGAACAAATCTCAAATGTA+GGG 0.534998 5:-81761735 None:intergenic
CAGAACAACTAGGGTTTGAG+AGG 0.539862 5:-81761651 None:intergenic
GCATTAAAAGGAACATCGAC+TGG 0.541692 5:-81761905 None:intergenic
TCCCATGGACATCCTTGGAC+AGG 0.549907 5:-81762421 None:intergenic
ACCTGTCCAAGGATGTCCAT+GGG 0.551767 5:+81762420 MsG0580028520.01.T01:CDS
TGAATTAAGTTTCGAAACAC+AGG 0.560190 5:-81761989 None:intergenic
CACCTGTCCAAGGATGTCCA+TGG 0.562287 5:+81762419 MsG0580028520.01.T01:CDS
TAATGCTTGTCCTATTCTAG+AGG 0.567076 5:+81761790 MsG0580028520.01.T01:CDS
AAACGAAAGATTACATCCCA+TGG 0.574685 5:-81762436 None:intergenic
ATAAATTATCCACCTGTCCA+AGG 0.583785 5:+81762409 MsG0580028520.01.T01:CDS
TAGGTATGTTGAAAATAATG+AGG 0.587443 5:+81761832 MsG0580028520.01.T01:CDS
CATGGACATCCTTGGACAGG+TGG 0.588117 5:-81762418 None:intergenic
AACCAATTTGGACAAGAACA+AGG 0.588578 5:-81761870 None:intergenic
AAATGTAGGGTATTGAGGGA+TGG 0.599200 5:-81761722 None:intergenic
CTAAAAGAGTACATGATCTG+AGG 0.604467 5:-81762257 None:intergenic
GTATGTTGAAAATAATGAGG+CGG 0.669832 5:+81761835 MsG0580028520.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTGAATAAGAATCAAATTA+AGG + Chr5:81762386-81762405 MsG0580028520.01.T01:CDS 20.0%
!!! TTGTTTTATCATTTCTTTCT+TGG + Chr5:81762022-81762041 MsG0580028520.01.T01:CDS 20.0%
! AAAGAACAAATCTCAAATGT+AGG - Chr5:81761739-81761758 None:intergenic 25.0%
! AAGAACAAATCTCAAATGTA+GGG - Chr5:81761738-81761757 None:intergenic 25.0%
! TAGGTATGTTGAAAATAATG+AGG + Chr5:81761832-81761851 MsG0580028520.01.T01:CDS 25.0%
! TTATCATTTCTTTCTTGGTT+GGG + Chr5:81762027-81762046 MsG0580028520.01.T01:CDS 25.0%
! TTTATCATTTCTTTCTTGGT+TGG + Chr5:81762026-81762045 MsG0580028520.01.T01:CDS 25.0%
!! TCATTATTTTCAACATACCT+AGG - Chr5:81761833-81761852 None:intergenic 25.0%
!! TTTCCAAATTTTGGATAATC+TGG - Chr5:81762202-81762221 None:intergenic 25.0%
ACCTTAGAGATAGCATTAAA+AGG - Chr5:81761920-81761939 None:intergenic 30.0%
ATGCATTCAATAGATGGAAT+TGG - Chr5:81762228-81762247 None:intergenic 30.0%
GTACCAGATTATCCAAAATT+TGG + Chr5:81762196-81762215 MsG0580028520.01.T01:CDS 30.0%
GTATGTTGAAAATAATGAGG+CGG + Chr5:81761835-81761854 MsG0580028520.01.T01:CDS 30.0%
TCAAACTCTCTATATGAGAA+AGG + Chr5:81762087-81762106 MsG0580028520.01.T01:CDS 30.0%
TGAATTAAGTTTCGAAACAC+AGG - Chr5:81761992-81762011 None:intergenic 30.0%
TGCATTCAATAGATGGAATT+GGG - Chr5:81762227-81762246 None:intergenic 30.0%
! AATTGGGCTTTTCCAAATTT+TGG - Chr5:81762211-81762230 None:intergenic 30.0%
! ATATAGAGAGTTTGAAGCTT+GGG - Chr5:81762082-81762101 None:intergenic 30.0%
! TCCTTTTAATGCTATCTCTA+AGG + Chr5:81761916-81761935 MsG0580028520.01.T01:CDS 30.0%
! TGTACTCTTTTAGACTTTGA+TGG + Chr5:81762267-81762286 MsG0580028520.01.T01:CDS 30.0%
AAACGAAAGATTACATCCCA+TGG - Chr5:81762439-81762458 None:intergenic 35.0%
AACCAATTTGGACAAGAACA+AGG - Chr5:81761873-81761892 None:intergenic 35.0%
AACCTTGTTCTTGTCCAAAT+TGG + Chr5:81761868-81761887 MsG0580028520.01.T01:CDS 35.0%
AATTGCATACTTCTCATCCT+AGG + Chr5:81761813-81761832 MsG0580028520.01.T01:CDS 35.0%
ACCAACATCTCTAACCAATT+TGG - Chr5:81761885-81761904 None:intergenic 35.0%
ATAAATTATCCACCTGTCCA+AGG + Chr5:81762409-81762428 MsG0580028520.01.T01:CDS 35.0%
CATCGCATTCTGCAAAATAT+AGG - Chr5:81762319-81762338 None:intergenic 35.0%
CTCAAGTTTCAGAACAACTA+GGG - Chr5:81761663-81761682 None:intergenic 35.0%
CTCTATATGAGAAAGGTTTG+TGG + Chr5:81762094-81762113 MsG0580028520.01.T01:intron 35.0%
GACGAAATGCATTCAATAGA+TGG - Chr5:81762234-81762253 None:intergenic 35.0%
GTTTGAGAGGTGAAAATAGT+GGG - Chr5:81761641-81761660 None:intergenic 35.0%
TAATGCTTGTCCTATTCTAG+AGG + Chr5:81761790-81761809 MsG0580028520.01.T01:CDS 35.0%
TCCAAATTGGTTAGAGATGT+TGG + Chr5:81761881-81761900 MsG0580028520.01.T01:CDS 35.0%
TCTCAAGTTTCAGAACAACT+AGG - Chr5:81761664-81761683 None:intergenic 35.0%
! CATATAGAGAGTTTGAAGCT+TGG - Chr5:81762083-81762102 None:intergenic 35.0%
! CTAAAAGAGTACATGATCTG+AGG - Chr5:81762260-81762279 None:intergenic 35.0%
! TTTACAGCTAGCTTCTCAAA+TGG + Chr5:81762363-81762382 MsG0580028520.01.T01:CDS 35.0%
!! ATCTCAAATGTAGGGTATTG+AGG - Chr5:81761730-81761749 None:intergenic 35.0%
!! GTATGCAATTCCTCTAGAAT+AGG - Chr5:81761803-81761822 None:intergenic 35.0%
!! TCTCAAATGTAGGGTATTGA+GGG - Chr5:81761729-81761748 None:intergenic 35.0%
ATTCTTTGTCCCTTTGACAG+TGG + Chr5:81762172-81762191 MsG0580028520.01.T01:intron 40.0%
CACAGGAATGCTTGTCAAAT+TGG - Chr5:81761975-81761994 None:intergenic 40.0%
GCATTAAAAGGAACATCGAC+TGG - Chr5:81761908-81761927 None:intergenic 40.0%
GGTTTGAGAGGTGAAAATAG+TGG - Chr5:81761642-81761661 None:intergenic 40.0%
! GGTGAAAATAGTGGGATTCA+AGG - Chr5:81761633-81761652 None:intergenic 40.0%
!! AAATGTAGGGTATTGAGGGA+TGG - Chr5:81761725-81761744 None:intergenic 40.0%
ATCTGGTACTCCACTGTCAA+AGG - Chr5:81762185-81762204 None:intergenic 45.0%
CAGAACAACTAGGGTTTGAG+AGG - Chr5:81761654-81761673 None:intergenic 45.0%
TCTGGTACTCCACTGTCAAA+GGG - Chr5:81762184-81762203 None:intergenic 45.0%
TTACATCCCATGGACATCCT+TGG - Chr5:81762429-81762448 None:intergenic 45.0%
! TTTGAAGCTTGGGACAATGC+TGG - Chr5:81762072-81762091 None:intergenic 45.0%
ACCTGTCCAAGGATGTCCAT+GGG + Chr5:81762420-81762439 MsG0580028520.01.T01:CDS 50.0%
CACCTGTCCAAGGATGTCCA+TGG + Chr5:81762419-81762438 MsG0580028520.01.T01:CDS 55.0%
CATGGACATCCTTGGACAGG+TGG - Chr5:81762421-81762440 None:intergenic 55.0%
TCCCATGGACATCCTTGGAC+AGG - Chr5:81762424-81762443 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 81761617 81762470 81761617 ID=MsG0580028520.01;Name=MsG0580028520.01
Chr5 mRNA 81761617 81762470 81761617 ID=MsG0580028520.01.T01;Parent=MsG0580028520.01;Name=MsG0580028520.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|256
Chr5 exon 81761617 81762108 81761617 ID=MsG0580028520.01.T01:exon:32977;Parent=MsG0580028520.01.T01
Chr5 exon 81762192 81762470 81762192 ID=MsG0580028520.01.T01:exon:32978;Parent=MsG0580028520.01.T01
Chr5 CDS 81761617 81762108 81761617 ID=MsG0580028520.01.T01:cds;Parent=MsG0580028520.01.T01
Chr5 CDS 81762192 81762470 81762192 ID=MsG0580028520.01.T01:cds;Parent=MsG0580028520.01.T01
Gene Sequence

>MsG0580028520.01.T01

ATGAATAATGTTACCTTGAATCCCACTATTTTCACCTCTCAAACCCTAGTTGTTCTGAAACTTGAGAGATTAAAAGTTGAAGCTGAAATTTTGAATGTTGATCTTCCATCCCTCAATACCCTACATTTGAGATTTGTTCTTTTTCAAAATAAGAATGATTTCATGAAACTTCTTAATGCTTGTCCTATTCTAGAGGAATTGCATACTTCTCATCCTAGGTATGTTGAAAATAATGAGGCGGAAGAGTTTAAAACCTTGTTCTTGTCCAAATTGGTTAGAGATGTTGGTCCAGTCGATGTTCCTTTTAATGCTATCTCTAAGGTCGAGTTTCTACGCATAGACTATACACAAAAAGCCAATTTGACAAGCATTCCTGTGTTTCGAAACTTAATTCACATTGAACTATTGTTTTATCATTTCTTTCTTGGTTGGGATAGTGTGATAGAATTGCTCCAGCATTGTCCCAAGCTTCAAACTCTCTATATGAGAAAGTGGAGTACCAGATTATCCAAAATTTGGAAAAGCCCAATTCCATCTATTGAATGCATTTCGTCTCACCTCAGATCATGTACTCTTTTAGACTTTGATGGCTCTGAAAATGATCTTCGATTTGCAACCTATATTTTGCAGAATGCGATGCTTTTAGAAGCGATGAAAATCAATTTTACAGCTAGCTTCTCAAATGGAGTGAATAAGAATCAAATTAAGGATAAATTATCCACCTGTCCAAGGATGTCCATGGGATGTAATCTTTCGTTTGAATCTATCTAG
Protein sequence

>MsG0580028520.01.T01

MNNVTLNPTIFTSQTLVVLKLERLKVEAEILNVDLPSLNTLHLRFVLFQNKNDFMKLLNACPILEELHTSHPRYVENNEAEEFKTLFLSKLVRDVGPVDVPFNAISKVEFLRIDYTQKANLTSIPVFRNLIHIELLFYHFFLGWDSVIELLQHCPKLQTLYMRKWSTRLSKIWKSPIPSIECISSHLRSCTLLDFDGSENDLRFATYILQNAMLLEAMKINFTASFSNGVNKNQIKDKLSTCPRMSMGCNLSFESI*