Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026417.01.T01 | XP_013468241.1 | 43.434 | 297 | 93 | 7 | 48 | 269 | 90 | 386 | 2.25E-56 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026417.01.T01 | A0A072VLH8 | 43.434 | 297 | 93 | 7 | 48 | 269 | 90 | 386 | 1.08e-56 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026417.01.T01 | MTR_1g066830 | 43.434 | 297 | 93 | 7 | 48 | 269 | 90 | 386 | 2.73e-60 | 196 |
| MsG0580026417.01.T01 | MTR_5g058100 | 39.941 | 338 | 125 | 11 | 9 | 269 | 47 | 383 | 2.00e-54 | 181 |
| MsG0580026417.01.T01 | MTR_5g058000 | 41.812 | 287 | 97 | 6 | 50 | 269 | 91 | 374 | 1.01e-51 | 173 |
| MsG0580026417.01.T01 | MTR_1089s0010 | 40.426 | 235 | 103 | 6 | 73 | 270 | 145 | 379 | 8.42e-42 | 147 |
| MsG0580026417.01.T01 | MTR_6g040270 | 36.918 | 279 | 107 | 7 | 61 | 270 | 103 | 381 | 1.55e-41 | 147 |
| MsG0580026417.01.T01 | MTR_5g073420 | 38.380 | 284 | 101 | 8 | 57 | 271 | 103 | 381 | 2.01e-40 | 144 |
| MsG0580026417.01.T01 | MTR_3g095600 | 44.615 | 195 | 81 | 5 | 73 | 263 | 123 | 294 | 9.94e-39 | 137 |
| MsG0580026417.01.T01 | MTR_1g085120 | 39.749 | 239 | 94 | 7 | 79 | 270 | 236 | 471 | 2.57e-38 | 140 |
| MsG0580026417.01.T01 | MTR_1g085120 | 39.749 | 239 | 94 | 7 | 79 | 270 | 311 | 546 | 6.35e-38 | 140 |
| MsG0580026417.01.T01 | MTR_4g039440 | 39.837 | 246 | 100 | 8 | 73 | 270 | 167 | 412 | 1.80e-37 | 137 |
| MsG0580026417.01.T01 | MTR_6g011460 | 38.367 | 245 | 106 | 6 | 71 | 270 | 177 | 421 | 5.91e-35 | 130 |
| MsG0580026417.01.T01 | MTR_6g022520 | 39.910 | 223 | 87 | 7 | 94 | 270 | 92 | 313 | 4.68e-34 | 125 |
| MsG0580026417.01.T01 | MTR_6g022500 | 34.416 | 308 | 125 | 11 | 39 | 272 | 174 | 478 | 2.75e-32 | 124 |
| MsG0580026417.01.T01 | MTR_7g055943 | 35.556 | 315 | 120 | 13 | 36 | 270 | 110 | 421 | 2.80e-32 | 123 |
| MsG0580026417.01.T01 | MTR_6g022360 | 38.000 | 250 | 101 | 9 | 71 | 269 | 161 | 407 | 1.19e-31 | 121 |
| MsG0580026417.01.T01 | MTR_3g095630 | 40.341 | 176 | 67 | 4 | 122 | 261 | 3 | 176 | 8.24e-28 | 106 |
| MsG0580026417.01.T01 | MTR_1g108820 | 34.426 | 244 | 112 | 6 | 73 | 268 | 141 | 384 | 1.10e-26 | 107 |
| MsG0580026417.01.T01 | MTR_5g076150 | 47.857 | 140 | 48 | 4 | 73 | 187 | 40 | 179 | 3.29e-26 | 103 |
| MsG0580026417.01.T01 | MTR_7g026500 | 34.818 | 247 | 103 | 9 | 73 | 271 | 160 | 396 | 1.24e-25 | 104 |
| MsG0580026417.01.T01 | MTR_5g045510 | 34.862 | 218 | 107 | 6 | 82 | 268 | 157 | 370 | 4.53e-24 | 100 |
| MsG0580026417.01.T01 | MTR_5g033200 | 39.157 | 166 | 65 | 4 | 135 | 264 | 11 | 176 | 1.12e-23 | 95.1 |
| MsG0580026417.01.T01 | MTR_1g085120 | 48.305 | 118 | 52 | 2 | 79 | 187 | 323 | 440 | 5.50e-23 | 98.2 |
| MsG0580026417.01.T01 | MTR_6g045333 | 31.799 | 239 | 108 | 7 | 82 | 269 | 211 | 445 | 4.14e-22 | 95.5 |
| MsG0580026417.01.T01 | MTR_1g108800 | 34.764 | 233 | 98 | 10 | 82 | 268 | 116 | 340 | 8.42e-22 | 93.6 |
| MsG0580026417.01.T01 | MTR_6g044572 | 32.653 | 245 | 103 | 8 | 69 | 270 | 163 | 388 | 1.45e-20 | 90.5 |
| MsG0580026417.01.T01 | MTR_6g044560 | 32.653 | 245 | 103 | 8 | 69 | 270 | 339 | 564 | 3.93e-20 | 90.1 |
| MsG0580026417.01.T01 | MTR_7g034120 | 32.245 | 245 | 109 | 8 | 67 | 270 | 80 | 308 | 1.65e-19 | 86.7 |
| MsG0580026417.01.T01 | MTR_5g031970 | 30.732 | 205 | 122 | 5 | 82 | 267 | 150 | 353 | 1.82e-19 | 87.0 |
| MsG0580026417.01.T01 | MTR_5g007410 | 25.982 | 331 | 160 | 10 | 16 | 262 | 71 | 400 | 3.44e-19 | 87.0 |
| MsG0580026417.01.T01 | MTR_0009s0080 | 29.927 | 274 | 113 | 8 | 61 | 256 | 114 | 386 | 4.96e-19 | 86.3 |
| MsG0580026417.01.T01 | MTR_1377s0010 | 40.146 | 137 | 47 | 3 | 145 | 246 | 1 | 137 | 2.24e-18 | 79.7 |
| MsG0580026417.01.T01 | MTR_7g075820 | 30.769 | 234 | 118 | 5 | 73 | 268 | 165 | 392 | 3.91e-18 | 83.6 |
| MsG0580026417.01.T01 | MTR_5g045170 | 32.068 | 237 | 111 | 6 | 82 | 272 | 161 | 393 | 4.94e-18 | 83.2 |
| MsG0580026417.01.T01 | MTR_5g073370 | 31.111 | 225 | 115 | 6 | 83 | 268 | 155 | 378 | 5.64e-18 | 83.2 |
| MsG0580026417.01.T01 | MTR_5g039450 | 30.224 | 268 | 110 | 8 | 64 | 267 | 101 | 355 | 4.32e-17 | 80.5 |
| MsG0580026417.01.T01 | MTR_7g056277 | 29.258 | 229 | 119 | 5 | 80 | 270 | 405 | 628 | 1.07e-16 | 80.1 |
| MsG0580026417.01.T01 | MTR_7g056287 | 30.736 | 231 | 113 | 8 | 80 | 270 | 149 | 372 | 1.54e-16 | 79.0 |
| MsG0580026417.01.T01 | MTR_5g058350 | 42.991 | 107 | 30 | 4 | 48 | 123 | 63 | 169 | 3.44e-16 | 75.1 |
| MsG0580026417.01.T01 | MTR_7g083740 | 27.848 | 237 | 125 | 5 | 75 | 269 | 134 | 366 | 4.61e-16 | 77.4 |
| MsG0580026417.01.T01 | MTR_2g036470 | 29.565 | 230 | 115 | 8 | 84 | 267 | 165 | 393 | 4.89e-16 | 77.4 |
| MsG0580026417.01.T01 | MTR_7g098570 | 28.319 | 226 | 118 | 6 | 82 | 265 | 165 | 388 | 7.09e-16 | 77.4 |
| MsG0580026417.01.T01 | MTR_2g007450 | 28.512 | 242 | 111 | 7 | 83 | 268 | 183 | 418 | 7.84e-16 | 77.0 |
| MsG0580026417.01.T01 | MTR_5g039490 | 30.450 | 289 | 133 | 10 | 43 | 271 | 97 | 377 | 8.12e-16 | 77.0 |
| MsG0580026417.01.T01 | MTR_5g065100 | 34.286 | 210 | 103 | 10 | 82 | 269 | 152 | 348 | 4.80e-15 | 74.7 |
| MsG0580026417.01.T01 | MTR_7g007340 | 34.343 | 198 | 78 | 8 | 84 | 236 | 139 | 329 | 5.93e-15 | 74.3 |
| MsG0580026417.01.T01 | MTR_5g054920 | 29.798 | 198 | 88 | 7 | 102 | 254 | 2 | 193 | 7.07e-15 | 71.6 |
| MsG0580026417.01.T01 | MTR_2g007400 | 30.252 | 238 | 110 | 9 | 80 | 268 | 171 | 401 | 1.62e-14 | 73.2 |
| MsG0580026417.01.T01 | MTR_6g022410 | 48.611 | 72 | 33 | 2 | 203 | 271 | 38 | 108 | 5.10e-14 | 67.4 |
| MsG0580026417.01.T01 | MTR_7g033915 | 30.876 | 217 | 101 | 8 | 95 | 269 | 155 | 364 | 5.54e-14 | 71.2 |
| MsG0580026417.01.T01 | MTR_5g039470 | 31.000 | 200 | 90 | 5 | 82 | 233 | 129 | 328 | 6.73e-14 | 70.9 |
| MsG0580026417.01.T01 | MTR_3g107100 | 29.730 | 259 | 124 | 9 | 71 | 272 | 143 | 400 | 8.28e-14 | 71.2 |
| MsG0580026417.01.T01 | MTR_3g108150 | 30.242 | 248 | 122 | 7 | 72 | 269 | 140 | 386 | 1.07e-13 | 70.9 |
| MsG0580026417.01.T01 | MTR_3g107120 | 28.947 | 228 | 113 | 7 | 82 | 267 | 168 | 388 | 2.67e-13 | 69.7 |
| MsG0580026417.01.T01 | MTR_6g033095 | 32.759 | 174 | 89 | 4 | 72 | 237 | 32 | 185 | 7.91e-13 | 66.2 |
| MsG0580026417.01.T01 | MTR_7g033990 | 27.542 | 236 | 98 | 8 | 82 | 264 | 162 | 377 | 1.73e-12 | 67.4 |
| MsG0580026417.01.T01 | MTR_3g036250 | 27.632 | 228 | 106 | 6 | 82 | 267 | 153 | 363 | 1.96e-12 | 67.0 |
| MsG0580026417.01.T01 | MTR_1g108820 | 32.716 | 162 | 81 | 3 | 73 | 206 | 141 | 302 | 2.49e-12 | 66.6 |
| MsG0580026417.01.T01 | MTR_1g053025 | 27.542 | 236 | 115 | 7 | 82 | 267 | 157 | 386 | 3.48e-12 | 66.2 |
| MsG0580026417.01.T01 | MTR_2g008320 | 27.273 | 242 | 130 | 8 | 75 | 270 | 194 | 435 | 6.77e-12 | 65.5 |
| MsG0580026417.01.T01 | MTR_5g061680 | 28.151 | 238 | 88 | 7 | 3 | 185 | 32 | 241 | 6.89e-12 | 65.1 |
| MsG0580026417.01.T01 | MTR_2g008310 | 28.112 | 249 | 123 | 9 | 71 | 270 | 130 | 371 | 3.03e-11 | 63.5 |
| MsG0580026417.01.T01 | MTR_5g073340 | 39.231 | 130 | 59 | 5 | 71 | 185 | 118 | 242 | 3.22e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTCTTGTACAAAT+TGG | 0.218696 | 5:+36828367 | MsG0580026417.01.T01:CDS |
| TAGACAGGGATGCTGCTAAA+AGG | 0.304763 | 5:+36829672 | MsG0580026417.01.T01:three_prime_UTR |
| AATGCAAAAGCATCAAATTA+TGG | 0.319387 | 5:+36828995 | MsG0580026417.01.T01:CDS |
| TCCTTTCAATGCTATCTCTA+AGG | 0.349019 | 5:+36828418 | MsG0580026417.01.T01:CDS |
| ACTCTACGTTCTCAGCTTCA+TGG | 0.352376 | 5:+36827826 | MsG0580026417.01.T01:CDS |
| GAGAATGATCTTCGATTTGC+AGG | 0.352426 | 5:+36828903 | MsG0580026417.01.T01:CDS |
| CATTAGATTAGCAAAGAGTT+TGG | 0.353017 | 5:+36829427 | MsG0580026417.01.T01:intron |
| ACTAGAGAAAACTCAAATAA+TGG | 0.383942 | 5:+36829545 | MsG0580026417.01.T01:three_prime_UTR |
| AGATTAGCAAAGAGTTTGGT+TGG | 0.422051 | 5:+36829431 | MsG0580026417.01.T01:intron |
| TGGGTCAGATTGCGCTAGAC+AGG | 0.435152 | 5:+36829657 | MsG0580026417.01.T01:three_prime_UTR |
| CTGTTCCATCGTTATCATCT+AGG | 0.441149 | 5:-36827866 | None:intergenic |
| ATTATAGCTAGTTCCTCAAA+TGG | 0.460705 | 5:+36828972 | MsG0580026417.01.T01:CDS |
| AGACAGGGATGCTGCTAAAA+GGG | 0.461523 | 5:+36829673 | MsG0580026417.01.T01:three_prime_UTR |
| CCTTGACATGACGTTCTTAG+CGG | 0.464917 | 5:-36828082 | None:intergenic |
| GTATGCAAATCCTCTAGAAT+AGG | 0.466014 | 5:-36828299 | None:intergenic |
| AACGAACAAATCTCAAATGT+AGG | 0.480549 | 5:-36828235 | None:intergenic |
| GATTAGCAAAGAGTTTGGTT+GGG | 0.481823 | 5:+36829432 | MsG0580026417.01.T01:intron |
| AAACGAAAGTTTACATCCCA+TGG | 0.493723 | 5:-36829045 | None:intergenic |
| AGATCTAGAAAGACACTTTG+AGG | 0.497487 | 5:-36828019 | None:intergenic |
| CTTTCTAGATCTTATAACAT+TGG | 0.507991 | 5:+36828030 | MsG0580026417.01.T01:CDS |
| TGAAGCGAATGACGCGGAGG+AGG | 0.508364 | 5:+36829510 | MsG0580026417.01.T01:three_prime_UTR |
| GATAACGATGGAACAGTCCT+AGG | 0.510827 | 5:+36827873 | MsG0580026417.01.T01:CDS |
| CAAGAAGGAAAGTGGAAAAG+TGG | 0.517242 | 5:+36829577 | MsG0580026417.01.T01:three_prime_UTR |
| GTCGTGAAAGCTTCCACACA+TGG | 0.520422 | 5:+36828052 | MsG0580026417.01.T01:CDS |
| CACCTATCCTACGATGTCCA+TGG | 0.530293 | 5:+36829028 | MsG0580026417.01.T01:CDS |
| GCATTGAAAGGAACATCGAT+TGG | 0.531221 | 5:-36828407 | None:intergenic |
| AAAGTGGAAAAGTGGAAGGT+GGG | 0.533511 | 5:+36829585 | MsG0580026417.01.T01:three_prime_UTR |
| TAATGGTGGTTCTACCAAGA+AGG | 0.554182 | 5:+36829562 | MsG0580026417.01.T01:three_prime_UTR |
| GGTTCTACCAAGAAGGAAAG+TGG | 0.556341 | 5:+36829569 | MsG0580026417.01.T01:three_prime_UTR |
| ACCTATCCTACGATGTCCAT+GGG | 0.557203 | 5:+36829029 | MsG0580026417.01.T01:CDS |
| TGATGACGATGAAACTGTCC+TGG | 0.557714 | 5:+36827896 | MsG0580026417.01.T01:CDS |
| TAATGCTTGTCCTATTCTAG+AGG | 0.559641 | 5:+36828289 | MsG0580026417.01.T01:CDS |
| ACGAACAAATCTCAAATGTA+GGG | 0.565632 | 5:-36828234 | None:intergenic |
| GAAAGTGGAAAAGTGGAAGG+TGG | 0.570466 | 5:+36829584 | MsG0580026417.01.T01:three_prime_UTR |
| TTTACTGCTGGTGGTAGTGG+TGG | 0.573811 | 5:+36829472 | MsG0580026417.01.T01:three_prime_UTR |
| CATGGACATCGTAGGATAGG+TGG | 0.577216 | 5:-36829027 | None:intergenic |
| GGTTGAATTCTACGATGACA+TGG | 0.577256 | 5:+36829637 | MsG0580026417.01.T01:three_prime_UTR |
| AAGGAAAGTGGAAAAGTGGA+AGG | 0.585508 | 5:+36829581 | MsG0580026417.01.T01:three_prime_UTR |
| TAGCGGCTTCAACCCATGTG+TGG | 0.595910 | 5:-36828065 | None:intergenic |
| TCAGCTTCATGGTTTGACGA+TGG | 0.599361 | 5:+36827837 | MsG0580026417.01.T01:CDS |
| TCCATCGTTATCATCTAGGA+CGG | 0.600693 | 5:-36827862 | None:intergenic |
| GACAGGGATGCTGCTAAAAG+GGG | 0.602663 | 5:+36829674 | MsG0580026417.01.T01:three_prime_UTR |
| TCCCATGGACATCGTAGGAT+AGG | 0.609710 | 5:-36829030 | None:intergenic |
| TGAGTTAAGTTTCGAAACAA+CGG | 0.611741 | 5:-36828491 | None:intergenic |
| AACCAATTTGTACAAGAACA+AGG | 0.613504 | 5:-36828369 | None:intergenic |
| ACCTTAGAGATAGCATTGAA+AGG | 0.614441 | 5:-36828419 | None:intergenic |
| GGGTCAGATTGCGCTAGACA+GGG | 0.629901 | 5:+36829658 | MsG0580026417.01.T01:three_prime_UTR |
| CAGTTTCATCGTCATCACCT+AGG | 0.630738 | 5:-36827890 | None:intergenic |
| GTTGAATTCTACGATGACAT+GGG | 0.641774 | 5:+36829638 | MsG0580026417.01.T01:three_prime_UTR |
| AGAGAAAACTCAAATAATGG+TGG | 0.644334 | 5:+36829548 | MsG0580026417.01.T01:three_prime_UTR |
| TCGTGAAAGCTTCCACACAT+GGG | 0.645376 | 5:+36828053 | MsG0580026417.01.T01:CDS |
| TTACATCCCATGGACATCGT+AGG | 0.667415 | 5:-36829035 | None:intergenic |
| TTATGATGAAGCGAATGACG+CGG | 0.667567 | 5:+36829504 | MsG0580026417.01.T01:three_prime_UTR |
| ACAGGGATGCTGCTAAAAGG+GGG | 0.674716 | 5:+36829675 | MsG0580026417.01.T01:three_prime_UTR |
| TGATGAAGCGAATGACGCGG+AGG | 0.683019 | 5:+36829507 | MsG0580026417.01.T01:three_prime_UTR |
| ACCGTCCTAGATGATAACGA+TGG | 0.718187 | 5:+36827861 | MsG0580026417.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAGTAATTAGATATATG+TGG | + | Chr5:36829211-36829230 | MsG0580026417.01.T01:intron | 20.0% |
| !!! | AAGGTTTTTTGACAATAAAT+CGG | - | Chr5:36829398-36829417 | None:intergenic | 20.0% |
| !!! | ATGTTTTATCATTTCTTTCT+TGG | + | Chr5:36828523-36828542 | MsG0580026417.01.T01:intron | 20.0% |
| !!! | TCATTATTTTCAACATATCT+AGG | - | Chr5:36828332-36828351 | None:intergenic | 20.0% |
| ! | AAATAGTCATCAAACTACAA+TGG | - | Chr5:36829317-36829336 | None:intergenic | 25.0% |
| ! | ACTAGAGAAAACTCAAATAA+TGG | + | Chr5:36829545-36829564 | MsG0580026417.01.T01:three_prime_UTR | 25.0% |
| ! | ATAAATTATCCACATATCCA+AGG | + | Chr5:36829155-36829174 | MsG0580026417.01.T01:intron | 25.0% |
| ! | CTTTCTAGATCTTATAACAT+TGG | + | Chr5:36828030-36828049 | MsG0580026417.01.T01:CDS | 25.0% |
| ! | TAATCTAATGTTGAACATCA+AGG | - | Chr5:36829417-36829436 | None:intergenic | 25.0% |
| ! | TATGCAACAATTGAATTTGA+TGG | + | Chr5:36829259-36829278 | MsG0580026417.01.T01:intron | 25.0% |
| ! | TTATCATTTCTTTCTTGGTT+GGG | + | Chr5:36828528-36828547 | MsG0580026417.01.T01:intron | 25.0% |
| ! | TTTAGTGTGGAAGAATTATA+GGG | + | Chr5:36829284-36829303 | MsG0580026417.01.T01:intron | 25.0% |
| ! | TTTATCATTTCTTTCTTGGT+TGG | + | Chr5:36828527-36828546 | MsG0580026417.01.T01:intron | 25.0% |
| !! | GATAAGAATGTGATTTTAAG+AGG | + | Chr5:36829611-36829630 | MsG0580026417.01.T01:three_prime_UTR | 25.0% |
| !! | TGTAGTCTTTTAAACTTTGA+TGG | + | Chr5:36828767-36828786 | MsG0580026417.01.T01:intron | 25.0% |
| !!! | AATGCAAAAGCATCAAATTA+TGG | + | Chr5:36828995-36829014 | MsG0580026417.01.T01:CDS | 25.0% |
| !!! | AGTTTGATGACTATTTTGTT+TGG | + | Chr5:36829321-36829340 | MsG0580026417.01.T01:intron | 25.0% |
| !!! | TTTCCAATTTTTGGATAATC+TGG | - | Chr5:36828702-36828721 | None:intergenic | 25.0% |
| AAAATGACAGAACACATAGA+AGG | - | Chr5:36827943-36827962 | None:intergenic | 30.0% | |
| AACCAATTTGTACAAGAACA+AGG | - | Chr5:36828372-36828391 | None:intergenic | 30.0% | |
| AACCTTGTTCTTGTACAAAT+TGG | + | Chr5:36828367-36828386 | MsG0580026417.01.T01:CDS | 30.0% | |
| AACGAACAAATCTCAAATGT+AGG | - | Chr5:36828238-36828257 | None:intergenic | 30.0% | |
| ACGAACAAATCTCAAATGTA+GGG | - | Chr5:36828237-36828256 | None:intergenic | 30.0% | |
| AGAGAAAACTCAAATAATGG+TGG | + | Chr5:36829548-36829567 | MsG0580026417.01.T01:three_prime_UTR | 30.0% | |
| ATGCATTCAATAGATGGAAT+TGG | - | Chr5:36828728-36828747 | None:intergenic | 30.0% | |
| ATTACATCTTGTTCCTCAAA+TGG | + | Chr5:36829109-36829128 | MsG0580026417.01.T01:intron | 30.0% | |
| ATTATAGCTAGTTCCTCAAA+TGG | + | Chr5:36828972-36828991 | MsG0580026417.01.T01:CDS | 30.0% | |
| CATTAGATTAGCAAAGAGTT+TGG | + | Chr5:36829427-36829446 | MsG0580026417.01.T01:intron | 30.0% | |
| CTTTAGTGTGGAAGAATTAT+AGG | + | Chr5:36829283-36829302 | MsG0580026417.01.T01:intron | 30.0% | |
| GTACCAGATTATCCAAAAAT+TGG | + | Chr5:36828696-36828715 | MsG0580026417.01.T01:intron | 30.0% | |
| TCAAATTCTTTACTGGACAA+AGG | + | Chr5:36828588-36828607 | MsG0580026417.01.T01:intron | 30.0% | |
| TGAGTTAAGTTTCGAAACAA+CGG | - | Chr5:36828494-36828513 | None:intergenic | 30.0% | |
| TGCATTCAATAGATGGAATT+GGG | - | Chr5:36828727-36828746 | None:intergenic | 30.0% | |
| TTAAAAGACTACATGATCTG+AGG | - | Chr5:36828760-36828779 | None:intergenic | 30.0% | |
| ! | AATTGGGCTTTTCCAATTTT+TGG | - | Chr5:36828711-36828730 | None:intergenic | 30.0% |
| ! | CAGTAAAGAATTTGAAGCTT+GGG | - | Chr5:36828583-36828602 | None:intergenic | 30.0% |
| !! | GAATGTGATTTTAAGAGGAT+TGG | + | Chr5:36829616-36829635 | MsG0580026417.01.T01:three_prime_UTR | 30.0% |
| !!! | GAACAAGGTTTTAAGTTCTT+CGG | - | Chr5:36828357-36828376 | None:intergenic | 30.0% |
| AAACGAAAGTTTACATCCCA+TGG | - | Chr5:36829048-36829067 | None:intergenic | 35.0% | |
| AAGTGAAAATGTGGGATTCA+AGG | - | Chr5:36828134-36828153 | None:intergenic | 35.0% | |
| AGATCTAGAAAGACACTTTG+AGG | - | Chr5:36828022-36828041 | None:intergenic | 35.0% | |
| AGATTAGCAAAGAGTTTGGT+TGG | + | Chr5:36829431-36829450 | MsG0580026417.01.T01:intron | 35.0% | |
| AGGTTTGAGAAGTGAAAATG+TGG | - | Chr5:36828143-36828162 | None:intergenic | 35.0% | |
| ATTCTTTGTCCCTTTGACAA+TGG | + | Chr5:36828672-36828691 | MsG0580026417.01.T01:intron | 35.0% | |
| CCAAGCTTCAAATTCTTTAC+TGG | + | Chr5:36828581-36828600 | MsG0580026417.01.T01:intron | 35.0% | |
| GACGAAATGCATTCAATAGA+TGG | - | Chr5:36828734-36828753 | None:intergenic | 35.0% | |
| GATTAGCAAAGAGTTTGGTT+GGG | + | Chr5:36829432-36829451 | MsG0580026417.01.T01:intron | 35.0% | |
| GGTTTGAGAAGTGAAAATGT+GGG | - | Chr5:36828142-36828161 | None:intergenic | 35.0% | |
| GTTGAATTCTACGATGACAT+GGG | + | Chr5:36829638-36829657 | MsG0580026417.01.T01:three_prime_UTR | 35.0% | |
| TAATGCTTGTCCTATTCTAG+AGG | + | Chr5:36828289-36828308 | MsG0580026417.01.T01:CDS | 35.0% | |
| TCCTTTCAATGCTATCTCTA+AGG | + | Chr5:36828418-36828437 | MsG0580026417.01.T01:CDS | 35.0% | |
| TCTCAAGTTTCAGAACAACA+AGG | - | Chr5:36828163-36828182 | None:intergenic | 35.0% | |
| ! | ACCTTAGAGATAGCATTGAA+AGG | - | Chr5:36828422-36828441 | None:intergenic | 35.0% |
| ! | AGAATGATTCTTCGATTTGC+AGG | + | Chr5:36828795-36828814 | MsG0580026417.01.T01:intron | 35.0% |
| ! | ATCTCAAATGTAGGGTTTTG+TGG | - | Chr5:36828229-36828248 | None:intergenic | 35.0% |
| ! | ATGCTTTTGCATTCCATTTG+AGG | - | Chr5:36828988-36829007 | None:intergenic | 35.0% |
| ! | CCAGTAAAGAATTTGAAGCT+TGG | - | Chr5:36828584-36828603 | None:intergenic | 35.0% |
| ! | GAATTTGATGGTCTTTAGTG+TGG | + | Chr5:36829271-36829290 | MsG0580026417.01.T01:intron | 35.0% |
| ! | GTACGTCTTTTACTCTTTGA+TGG | + | Chr5:36828876-36828895 | MsG0580026417.01.T01:CDS | 35.0% |
| !! | GTATGCAAATCCTCTAGAAT+AGG | - | Chr5:36828302-36828321 | None:intergenic | 35.0% |
| !! | TCTCAAATGTAGGGTTTTGT+GGG | - | Chr5:36828228-36828247 | None:intergenic | 35.0% |
| !! | TTGAGGCTAAACGTTTTGAT+GGG | - | Chr5:36828005-36828024 | None:intergenic | 35.0% |
| !! | TTTGAGGCTAAACGTTTTGA+TGG | - | Chr5:36828006-36828025 | None:intergenic | 35.0% |
| !!! | AAGAAAGCTACTTTTACTGC+TGG | + | Chr5:36829460-36829479 | MsG0580026417.01.T01:three_prime_UTR | 35.0% |
| !!! | GCTTTATTTTGCAGAATGTG+AGG | + | Chr5:36828817-36828836 | MsG0580026417.01.T01:CDS | 35.0% |
| AAAGTGGAAAAGTGGAAGGT+GGG | + | Chr5:36829585-36829604 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| AAGGAAAGTGGAAAAGTGGA+AGG | + | Chr5:36829581-36829600 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| ACATATCCAAGGATGTCCAT+GGG | + | Chr5:36829166-36829185 | MsG0580026417.01.T01:intron | 40.0% | |
| AGTGTGGAAGAATTATAGGG+TGG | + | Chr5:36829287-36829306 | MsG0580026417.01.T01:intron | 40.0% | |
| ATCTGGTACTCCATTGTCAA+AGG | - | Chr5:36828685-36828704 | None:intergenic | 40.0% | |
| CAAGAAGGAAAGTGGAAAAG+TGG | + | Chr5:36829577-36829596 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| CTGTTCCATCGTTATCATCT+AGG | - | Chr5:36827869-36827888 | None:intergenic | 40.0% | |
| CTTTACTGGACAAAGGTTTG+TGG | + | Chr5:36828595-36828614 | MsG0580026417.01.T01:intron | 40.0% | |
| GCATTGAAAGGAACATCGAT+TGG | - | Chr5:36828410-36828429 | None:intergenic | 40.0% | |
| GGTTGAATTCTACGATGACA+TGG | + | Chr5:36829637-36829656 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| TAAAAGGGGGTTGGAATTGA+TGG | + | Chr5:36829688-36829707 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| TCCATCGTTATCATCTAGGA+CGG | - | Chr5:36827865-36827884 | None:intergenic | 40.0% | |
| TCTGGTACTCCATTGTCAAA+GGG | - | Chr5:36828684-36828703 | None:intergenic | 40.0% | |
| TTATGATGAAGCGAATGACG+CGG | + | Chr5:36829504-36829523 | MsG0580026417.01.T01:three_prime_UTR | 40.0% | |
| ! | ATGGGCTTGTTTCTCACAAA+AGG | - | Chr5:36827987-36828006 | None:intergenic | 40.0% |
| ! | CACTTTTCCACTTTCCTTCT+TGG | - | Chr5:36829579-36829598 | None:intergenic | 40.0% |
| ! | GAGAATGATCTTCGATTTGC+AGG | + | Chr5:36828903-36828922 | MsG0580026417.01.T01:CDS | 40.0% |
| ! | GCTATATTTTGCAGAATGCG+AGG | + | Chr5:36828925-36828944 | MsG0580026417.01.T01:CDS | 40.0% |
| ! | TAATGGTGGTTCTACCAAGA+AGG | + | Chr5:36829562-36829581 | MsG0580026417.01.T01:three_prime_UTR | 40.0% |
| !! | AAATGTAGGGTTTTGTGGGA+TGG | - | Chr5:36828224-36828243 | None:intergenic | 40.0% |
| !!! | AAAGCTACTTTTACTGCTGG+TGG | + | Chr5:36829463-36829482 | MsG0580026417.01.T01:three_prime_UTR | 40.0% |
| ACAGAACACATAGAAGGCGA+TGG | - | Chr5:36827937-36827956 | None:intergenic | 45.0% | |
| ACCTATCCTACGATGTCCAT+GGG | + | Chr5:36829029-36829048 | MsG0580026417.01.T01:CDS | 45.0% | |
| ACTCTACGTTCTCAGCTTCA+TGG | + | Chr5:36827826-36827845 | MsG0580026417.01.T01:CDS | 45.0% | |
| AGACAGGGATGCTGCTAAAA+GGG | + | Chr5:36829673-36829692 | MsG0580026417.01.T01:three_prime_UTR | 45.0% | |
| CACATATCCAAGGATGTCCA+TGG | + | Chr5:36829165-36829184 | MsG0580026417.01.T01:intron | 45.0% | |
| CAGTTTCATCGTCATCACCT+AGG | - | Chr5:36827893-36827912 | None:intergenic | 45.0% | |
| CATGGACATCCTTGGATATG+TGG | - | Chr5:36829167-36829186 | None:intergenic | 45.0% | |
| CCTTGACATGACGTTCTTAG+CGG | - | Chr5:36828085-36828104 | None:intergenic | 45.0% | |
| GAAAGTGGAAAAGTGGAAGG+TGG | + | Chr5:36829584-36829603 | MsG0580026417.01.T01:three_prime_UTR | 45.0% | |
| GATAACGATGGAACAGTCCT+AGG | + | Chr5:36827873-36827892 | MsG0580026417.01.T01:CDS | 45.0% | |
| GGTTCTACCAAGAAGGAAAG+TGG | + | Chr5:36829569-36829588 | MsG0580026417.01.T01:three_prime_UTR | 45.0% | |
| TAGACAGGGATGCTGCTAAA+AGG | + | Chr5:36829672-36829691 | MsG0580026417.01.T01:three_prime_UTR | 45.0% | |
| TCAGCTTCATGGTTTGACGA+TGG | + | Chr5:36827837-36827856 | MsG0580026417.01.T01:CDS | 45.0% | |
| TCGTGAAAGCTTCCACACAT+GGG | + | Chr5:36828053-36828072 | MsG0580026417.01.T01:CDS | 45.0% | |
| TTACATCCCATGGACATCCT+TGG | - | Chr5:36829175-36829194 | None:intergenic | 45.0% | |
| TTACATCCCATGGACATCGT+AGG | - | Chr5:36829038-36829057 | None:intergenic | 45.0% | |
| ! | ACCGTCCTAGATGATAACGA+TGG | + | Chr5:36827861-36827880 | MsG0580026417.01.T01:CDS | 45.0% |
| ! | ACTTTTACTGCTGGTGGTAG+TGG | + | Chr5:36829469-36829488 | MsG0580026417.01.T01:three_prime_UTR | 45.0% |
| ! | TGATGACGATGAAACTGTCC+TGG | + | Chr5:36827896-36827915 | MsG0580026417.01.T01:CDS | 45.0% |
| ! | TTTGAAGCTTGGGACAATGC+TGG | - | Chr5:36828573-36828592 | None:intergenic | 45.0% |
| !!! | TGGTTTTTTACGCGTCATCC+AGG | - | Chr5:36827917-36827936 | None:intergenic | 45.0% |
| ACAGGGATGCTGCTAAAAGG+GGG | + | Chr5:36829675-36829694 | MsG0580026417.01.T01:three_prime_UTR | 50.0% | |
| CACCTATCCTACGATGTCCA+TGG | + | Chr5:36829028-36829047 | MsG0580026417.01.T01:CDS | 50.0% | |
| CATGGACATCGTAGGATAGG+TGG | - | Chr5:36829030-36829049 | None:intergenic | 50.0% | |
| CCGCTAAGAACGTCATGTCA+AGG | + | Chr5:36828082-36828101 | MsG0580026417.01.T01:intron | 50.0% | |
| GACAGGGATGCTGCTAAAAG+GGG | + | Chr5:36829674-36829693 | MsG0580026417.01.T01:three_prime_UTR | 50.0% | |
| GTCGTGAAAGCTTCCACACA+TGG | + | Chr5:36828052-36828071 | MsG0580026417.01.T01:CDS | 50.0% | |
| TCCCATGGACATCGTAGGAT+AGG | - | Chr5:36829033-36829052 | None:intergenic | 50.0% | |
| !! | TTTACTGCTGGTGGTAGTGG+TGG | + | Chr5:36829472-36829491 | MsG0580026417.01.T01:three_prime_UTR | 50.0% |
| GGATGCTGCTAAAAGGGGGT+TGG | + | Chr5:36829679-36829698 | MsG0580026417.01.T01:three_prime_UTR | 55.0% | |
| GGGTCAGATTGCGCTAGACA+GGG | + | Chr5:36829658-36829677 | MsG0580026417.01.T01:three_prime_UTR | 55.0% | |
| TAGCGGCTTCAACCCATGTG+TGG | - | Chr5:36828068-36828087 | None:intergenic | 55.0% | |
| TGATGAAGCGAATGACGCGG+AGG | + | Chr5:36829507-36829526 | MsG0580026417.01.T01:three_prime_UTR | 55.0% | |
| TGGGTCAGATTGCGCTAGAC+AGG | + | Chr5:36829657-36829676 | MsG0580026417.01.T01:three_prime_UTR | 55.0% | |
| TGAAGCGAATGACGCGGAGG+AGG | + | Chr5:36829510-36829529 | MsG0580026417.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 36827807 | 36829715 | 36827807 | ID=MsG0580026417.01;Name=MsG0580026417.01 |
| Chr5 | mRNA | 36827807 | 36829715 | 36827807 | ID=MsG0580026417.01.T01;Parent=MsG0580026417.01;Name=MsG0580026417.01.T01;_AED=0.38;_eAED=0.55;_QI=0|0|0|1|1|1|5|282|272 |
| Chr5 | exon | 36827807 | 36827925 | 36827807 | ID=MsG0580026417.01.T01:exon:394;Parent=MsG0580026417.01.T01 |
| Chr5 | exon | 36828002 | 36828097 | 36828002 | ID=MsG0580026417.01.T01:exon:393;Parent=MsG0580026417.01.T01 |
| Chr5 | exon | 36828184 | 36828524 | 36828184 | ID=MsG0580026417.01.T01:exon:392;Parent=MsG0580026417.01.T01 |
| Chr5 | exon | 36828817 | 36829078 | 36828817 | ID=MsG0580026417.01.T01:exon:391;Parent=MsG0580026417.01.T01 |
| Chr5 | exon | 36829433 | 36829715 | 36829433 | ID=MsG0580026417.01.T01:exon:390;Parent=MsG0580026417.01.T01 |
| Chr5 | CDS | 36827807 | 36827925 | 36827807 | ID=MsG0580026417.01.T01:cds;Parent=MsG0580026417.01.T01 |
| Chr5 | CDS | 36828002 | 36828097 | 36828002 | ID=MsG0580026417.01.T01:cds;Parent=MsG0580026417.01.T01 |
| Chr5 | CDS | 36828184 | 36828524 | 36828184 | ID=MsG0580026417.01.T01:cds;Parent=MsG0580026417.01.T01 |
| Chr5 | CDS | 36828817 | 36829078 | 36828817 | ID=MsG0580026417.01.T01:cds;Parent=MsG0580026417.01.T01 |
| Chr5 | CDS | 36829433 | 36829433 | 36829433 | ID=MsG0580026417.01.T01:cds;Parent=MsG0580026417.01.T01 |
| Chr5 | three_prime_UTR | 36829434 | 36829715 | 36829434 | ID=MsG0580026417.01.T01:three_prime_utr;Parent=MsG0580026417.01.T01 |
| Gene Sequence |
| Protein sequence |
