Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028519.01.T01 | AES98838.1 | 75.556 | 225 | 43 | 1 | 1 | 225 | 73 | 285 | 2.64E-114 | 342 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028519.01.T01 | G7JZR2 | 75.556 | 225 | 43 | 1 | 1 | 225 | 73 | 285 | 1.26e-114 | 342 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028519.01.T01 | MTR_5g073420 | 75.556 | 225 | 43 | 1 | 1 | 225 | 73 | 285 | 3.19e-118 | 342 |
MsG0580028519.01.T01 | MTR_5g061680 | 59.111 | 225 | 62 | 3 | 1 | 225 | 73 | 267 | 5.24e-81 | 245 |
MsG0580028519.01.T01 | MTR_1g066830 | 53.219 | 233 | 92 | 5 | 2 | 225 | 70 | 294 | 3.33e-65 | 207 |
MsG0580028519.01.T01 | MTR_5g058000 | 50.679 | 221 | 94 | 6 | 2 | 220 | 70 | 277 | 5.29e-60 | 193 |
MsG0580028519.01.T01 | MTR_1089s0010 | 46.903 | 226 | 107 | 3 | 2 | 225 | 70 | 284 | 3.63e-58 | 188 |
MsG0580028519.01.T01 | MTR_5g058100 | 47.556 | 225 | 103 | 6 | 2 | 220 | 71 | 286 | 2.48e-55 | 181 |
MsG0580028519.01.T01 | MTR_6g040270 | 45.701 | 221 | 109 | 3 | 2 | 220 | 70 | 281 | 4.48e-52 | 172 |
MsG0580028519.01.T01 | MTR_1g085120 | 44.444 | 216 | 107 | 6 | 2 | 210 | 241 | 450 | 2.57e-45 | 157 |
MsG0580028519.01.T01 | MTR_1g085120 | 44.444 | 216 | 107 | 6 | 2 | 210 | 154 | 363 | 3.59e-45 | 157 |
MsG0580028519.01.T01 | MTR_1g085120 | 44.444 | 216 | 107 | 6 | 2 | 210 | 229 | 438 | 1.04e-44 | 157 |
MsG0580028519.01.T01 | MTR_5g076150 | 44.444 | 207 | 86 | 5 | 41 | 225 | 4 | 203 | 3.40e-43 | 145 |
MsG0580028519.01.T01 | MTR_6g022500 | 42.035 | 226 | 114 | 6 | 2 | 220 | 163 | 378 | 5.85e-43 | 151 |
MsG0580028519.01.T01 | MTR_6g011460 | 44.608 | 204 | 96 | 6 | 1 | 199 | 107 | 298 | 1.87e-41 | 146 |
MsG0580028519.01.T01 | MTR_4g039440 | 41.096 | 219 | 113 | 9 | 1 | 210 | 90 | 301 | 5.86e-40 | 142 |
MsG0580028519.01.T01 | MTR_7g055943 | 41.872 | 203 | 104 | 6 | 2 | 199 | 102 | 295 | 3.04e-35 | 129 |
MsG0580028519.01.T01 | MTR_0009s0080 | 38.793 | 232 | 118 | 9 | 2 | 220 | 80 | 300 | 1.17e-34 | 128 |
MsG0580028519.01.T01 | MTR_3g095600 | 45.198 | 177 | 62 | 6 | 2 | 175 | 68 | 212 | 3.74e-33 | 121 |
MsG0580028519.01.T01 | MTR_6g045333 | 35.745 | 235 | 129 | 8 | 1 | 223 | 124 | 348 | 7.81e-33 | 123 |
MsG0580028519.01.T01 | MTR_6g022360 | 41.262 | 206 | 102 | 8 | 2 | 199 | 92 | 286 | 2.37e-31 | 119 |
MsG0580028519.01.T01 | MTR_6g022520 | 42.411 | 224 | 111 | 9 | 6 | 220 | 1 | 215 | 3.11e-31 | 117 |
MsG0580028519.01.T01 | MTR_3g071850 | 34.703 | 219 | 123 | 6 | 1 | 208 | 87 | 296 | 3.42e-31 | 120 |
MsG0580028519.01.T01 | MTR_5g007410 | 36.052 | 233 | 132 | 6 | 1 | 223 | 87 | 312 | 3.47e-31 | 119 |
MsG0580028519.01.T01 | MTR_7g026500 | 34.874 | 238 | 126 | 8 | 2 | 223 | 76 | 300 | 4.28e-31 | 118 |
MsG0580028519.01.T01 | MTR_1g108820 | 37.186 | 199 | 112 | 5 | 16 | 204 | 80 | 275 | 1.94e-29 | 113 |
MsG0580028519.01.T01 | MTR_1g108820 | 37.186 | 199 | 112 | 5 | 16 | 204 | 80 | 275 | 2.74e-29 | 112 |
MsG0580028519.01.T01 | MTR_5g045510 | 37.054 | 224 | 108 | 8 | 1 | 209 | 73 | 278 | 6.33e-29 | 112 |
MsG0580028519.01.T01 | MTR_1g108800 | 38.974 | 195 | 106 | 6 | 13 | 204 | 48 | 232 | 2.62e-28 | 109 |
MsG0580028519.01.T01 | MTR_5g058350 | 61.053 | 95 | 34 | 2 | 37 | 131 | 79 | 170 | 2.52e-27 | 103 |
MsG0580028519.01.T01 | MTR_5g045170 | 35.043 | 234 | 131 | 6 | 2 | 223 | 71 | 295 | 2.99e-26 | 105 |
MsG0580028519.01.T01 | MTR_3g108560 | 35.814 | 215 | 103 | 11 | 2 | 205 | 79 | 269 | 1.33e-23 | 96.7 |
MsG0580028519.01.T01 | MTR_3g108560 | 35.814 | 215 | 103 | 11 | 2 | 205 | 79 | 269 | 2.64e-23 | 96.7 |
MsG0580028519.01.T01 | MTR_5g039470 | 34.862 | 218 | 121 | 6 | 2 | 208 | 47 | 254 | 5.53e-23 | 95.1 |
MsG0580028519.01.T01 | MTR_2g036470 | 36.986 | 219 | 114 | 10 | 1 | 206 | 75 | 282 | 2.34e-21 | 91.7 |
MsG0580028519.01.T01 | MTR_5g073340 | 36.458 | 192 | 100 | 9 | 25 | 204 | 66 | 247 | 4.14e-21 | 89.7 |
MsG0580028519.01.T01 | MTR_5g031970 | 32.308 | 195 | 128 | 3 | 2 | 193 | 62 | 255 | 3.72e-20 | 87.8 |
MsG0580028519.01.T01 | MTR_7g007370 | 41.781 | 146 | 73 | 4 | 65 | 206 | 97 | 234 | 5.94e-20 | 87.0 |
MsG0580028519.01.T01 | MTR_6g044572 | 35.714 | 196 | 93 | 6 | 29 | 220 | 119 | 285 | 6.53e-20 | 87.4 |
MsG0580028519.01.T01 | MTR_5g073370 | 35.859 | 198 | 109 | 7 | 16 | 204 | 77 | 265 | 8.62e-20 | 87.0 |
MsG0580028519.01.T01 | MTR_3g107100 | 35.938 | 192 | 109 | 7 | 16 | 199 | 83 | 268 | 1.53e-19 | 86.7 |
MsG0580028519.01.T01 | MTR_7g056287 | 33.628 | 226 | 127 | 8 | 1 | 220 | 65 | 273 | 1.63e-19 | 86.3 |
MsG0580028519.01.T01 | MTR_7g056277 | 33.962 | 212 | 118 | 7 | 1 | 206 | 321 | 516 | 1.75e-19 | 87.0 |
MsG0580028519.01.T01 | MTR_6g044560 | 38.418 | 177 | 77 | 6 | 29 | 201 | 295 | 443 | 4.08e-19 | 85.9 |
MsG0580028519.01.T01 | MTR_3g107120 | 33.649 | 211 | 126 | 6 | 16 | 220 | 93 | 295 | 1.48e-18 | 83.6 |
MsG0580028519.01.T01 | MTR_7g088260 | 32.889 | 225 | 125 | 9 | 10 | 223 | 157 | 366 | 2.23e-18 | 83.6 |
MsG0580028519.01.T01 | MTR_7g007340 | 43.046 | 151 | 65 | 8 | 56 | 199 | 102 | 238 | 2.38e-18 | 82.8 |
MsG0580028519.01.T01 | MTR_3g095640 | 47.917 | 96 | 43 | 3 | 2 | 92 | 82 | 175 | 2.81e-18 | 79.3 |
MsG0580028519.01.T01 | MTR_1g041245 | 34.146 | 205 | 115 | 9 | 2 | 199 | 70 | 261 | 8.11e-18 | 81.6 |
MsG0580028519.01.T01 | MTR_2g007400 | 33.000 | 200 | 117 | 7 | 13 | 199 | 86 | 281 | 9.78e-18 | 81.3 |
MsG0580028519.01.T01 | MTR_5g073400 | 43.478 | 115 | 57 | 5 | 13 | 125 | 4 | 112 | 1.74e-17 | 76.3 |
MsG0580028519.01.T01 | MTR_0492s0020 | 33.684 | 190 | 110 | 5 | 10 | 199 | 152 | 325 | 2.00e-17 | 80.5 |
MsG0580028519.01.T01 | MTR_0543s0010 | 33.684 | 190 | 110 | 5 | 10 | 199 | 152 | 325 | 2.20e-17 | 80.5 |
MsG0580028519.01.T01 | MTR_3g087260 | 32.632 | 190 | 106 | 5 | 43 | 223 | 182 | 358 | 2.29e-16 | 77.8 |
MsG0580028519.01.T01 | MTR_2g005990 | 32.955 | 176 | 104 | 5 | 31 | 197 | 101 | 271 | 6.70e-16 | 76.3 |
MsG0580028519.01.T01 | MTR_5g039450 | 31.250 | 208 | 106 | 6 | 2 | 199 | 68 | 248 | 1.23e-15 | 75.1 |
MsG0580028519.01.T01 | MTR_7g056447 | 37.903 | 124 | 74 | 3 | 10 | 132 | 75 | 196 | 2.39e-15 | 73.6 |
MsG0580028519.01.T01 | MTR_5g063950 | 30.622 | 209 | 120 | 10 | 1 | 200 | 46 | 238 | 2.83e-15 | 73.9 |
MsG0580028519.01.T01 | MTR_7g007080 | 30.137 | 219 | 134 | 9 | 10 | 220 | 73 | 280 | 3.16e-15 | 73.9 |
MsG0580028519.01.T01 | MTR_3g095630 | 45.783 | 83 | 42 | 2 | 141 | 220 | 6 | 88 | 4.66e-15 | 71.2 |
MsG0580028519.01.T01 | MTR_5g039490 | 31.937 | 191 | 99 | 5 | 1 | 177 | 81 | 254 | 4.94e-15 | 73.6 |
MsG0580028519.01.T01 | MTR_3g108150 | 32.828 | 198 | 112 | 9 | 10 | 199 | 79 | 263 | 7.58e-15 | 73.2 |
MsG0580028519.01.T01 | MTR_5g061410 | 33.333 | 168 | 94 | 4 | 39 | 199 | 81 | 237 | 1.03e-14 | 71.6 |
MsG0580028519.01.T01 | MTR_7g098570 | 31.443 | 194 | 120 | 6 | 10 | 199 | 86 | 270 | 1.38e-14 | 72.4 |
MsG0580028519.01.T01 | MTR_5g083890 | 34.239 | 184 | 103 | 7 | 38 | 206 | 110 | 290 | 1.83e-14 | 72.0 |
MsG0580028519.01.T01 | MTR_5g065100 | 35.393 | 178 | 96 | 8 | 2 | 177 | 71 | 231 | 2.26e-14 | 71.6 |
MsG0580028519.01.T01 | MTR_1g059860 | 35.955 | 178 | 82 | 7 | 35 | 207 | 38 | 188 | 3.05e-14 | 70.9 |
MsG0580028519.01.T01 | MTR_7g098480 | 31.633 | 196 | 119 | 5 | 10 | 201 | 84 | 268 | 4.04e-14 | 71.2 |
MsG0580028519.01.T01 | MTR_1377s0010 | 46.032 | 63 | 34 | 0 | 163 | 225 | 5 | 67 | 4.44e-14 | 67.4 |
MsG0580028519.01.T01 | MTR_7g115270 | 30.000 | 210 | 128 | 5 | 10 | 203 | 78 | 284 | 5.00e-14 | 70.9 |
MsG0580028519.01.T01 | MTR_2g007500 | 32.787 | 183 | 101 | 6 | 38 | 204 | 95 | 271 | 9.96e-14 | 69.3 |
MsG0580028519.01.T01 | MTR_3g109982 | 39.655 | 116 | 67 | 2 | 8 | 123 | 77 | 189 | 2.16e-13 | 69.3 |
MsG0580028519.01.T01 | MTR_3g109982 | 34.532 | 139 | 73 | 4 | 66 | 199 | 224 | 349 | 8.01e-12 | 64.7 |
MsG0580028519.01.T01 | MTR_3g110010 | 39.655 | 116 | 67 | 2 | 8 | 123 | 77 | 189 | 2.85e-13 | 68.9 |
MsG0580028519.01.T01 | MTR_3g110010 | 34.532 | 139 | 73 | 4 | 66 | 199 | 224 | 349 | 1.36e-11 | 63.9 |
MsG0580028519.01.T01 | MTR_3g107140 | 38.938 | 113 | 65 | 2 | 16 | 125 | 73 | 184 | 3.64e-13 | 66.2 |
MsG0580028519.01.T01 | MTR_3g099830 | 38.686 | 137 | 70 | 5 | 66 | 197 | 122 | 249 | 5.67e-13 | 67.4 |
MsG0580028519.01.T01 | MTR_7g056020 | 30.660 | 212 | 114 | 8 | 8 | 212 | 73 | 258 | 5.84e-13 | 67.8 |
MsG0580028519.01.T01 | MTR_7g098510 | 28.934 | 197 | 127 | 6 | 10 | 202 | 84 | 271 | 7.76e-13 | 67.0 |
MsG0580028519.01.T01 | MTR_5g054920 | 36.066 | 122 | 55 | 3 | 109 | 220 | 2 | 110 | 1.15e-12 | 64.7 |
MsG0580028519.01.T01 | MTR_5g033200 | 41.333 | 75 | 44 | 0 | 151 | 225 | 13 | 87 | 1.62e-12 | 63.9 |
MsG0580028519.01.T01 | MTR_7g075820 | 35.664 | 143 | 79 | 5 | 62 | 197 | 142 | 278 | 1.68e-12 | 66.2 |
MsG0580028519.01.T01 | MTR_4g134150 | 32.540 | 126 | 80 | 3 | 10 | 134 | 76 | 197 | 3.23e-12 | 64.3 |
MsG0580028519.01.T01 | MTR_1g053025 | 30.000 | 200 | 112 | 7 | 38 | 221 | 105 | 292 | 5.00e-12 | 64.7 |
MsG0580028519.01.T01 | MTR_1g107385 | 36.170 | 141 | 75 | 5 | 65 | 197 | 169 | 302 | 5.12e-12 | 64.7 |
MsG0580028519.01.T01 | MTR_5g013500 | 33.113 | 151 | 83 | 3 | 10 | 159 | 61 | 194 | 6.26e-12 | 64.3 |
MsG0580028519.01.T01 | MTR_7g060470 | 28.713 | 202 | 128 | 6 | 9 | 199 | 76 | 272 | 8.02e-12 | 64.3 |
MsG0580028519.01.T01 | MTR_2g007450 | 27.917 | 240 | 127 | 11 | 16 | 220 | 93 | 321 | 1.04e-11 | 63.9 |
MsG0580028519.01.T01 | MTR_7g056430 | 29.952 | 207 | 107 | 8 | 10 | 209 | 75 | 250 | 1.28e-11 | 63.9 |
MsG0580028519.01.T01 | MTR_7g056420 | 29.952 | 207 | 107 | 8 | 10 | 209 | 75 | 250 | 1.36e-11 | 63.9 |
MsG0580028519.01.T01 | MTR_6g083130 | 40.206 | 97 | 45 | 2 | 29 | 125 | 226 | 309 | 2.20e-11 | 62.8 |
MsG0580028519.01.T01 | MTR_7g034120 | 30.049 | 203 | 115 | 9 | 10 | 199 | 4 | 192 | 2.71e-11 | 62.4 |
MsG0580028519.01.T01 | MTR_2g008310 | 34.043 | 141 | 84 | 5 | 65 | 199 | 122 | 259 | 3.35e-11 | 62.4 |
MsG0580028519.01.T01 | MTR_2g008320 | 34.228 | 149 | 73 | 6 | 65 | 199 | 176 | 313 | 4.10e-11 | 62.4 |
MsG0580028519.01.T01 | MTR_3g107160 | 31.429 | 175 | 101 | 7 | 35 | 200 | 105 | 269 | 5.25e-11 | 62.0 |
MsG0580028519.01.T01 | MTR_7g034115 | 28.070 | 228 | 141 | 10 | 2 | 220 | 70 | 283 | 6.73e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028519.01.T01 | AT5G22660 | 33.028 | 109 | 67 | 3 | 38 | 143 | 104 | 209 | 2.67e-11 | 62.4 |
MsG0580028519.01.T01 | AT5G22660 | 33.028 | 109 | 67 | 3 | 38 | 143 | 104 | 209 | 6.53e-11 | 61.6 |
Find 34 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAAGTACAAGAATGATTTA+AGG | 0.188423 | 5:+81755899 | MsG0580028519.01.T01:CDS |
GATTTAAGGAAACTTCTTAA+TGG | 0.262391 | 5:+81755913 | MsG0580028519.01.T01:CDS |
ACTTAATTCACATTAAACTA+TGG | 0.293230 | 5:+81756166 | MsG0580028519.01.T01:CDS |
CTTGAAGCTTTGGGCAATGC+TGG | 0.352982 | 5:-81756234 | None:intergenic |
GTTTCAGAACAACTAGGGTT+TGG | 0.360325 | 5:-81755795 | None:intergenic |
TTTCAGAACAACTAGGGTTT+GGG | 0.373808 | 5:-81755794 | None:intergenic |
TGCTCTAACCAACTTTGAAA+AGG | 0.383090 | 5:-81756037 | None:intergenic |
TGGTTGCATGACTTTATTGA+TGG | 0.400423 | 5:+81756186 | MsG0580028519.01.T01:CDS |
GTTTGGGAGGTGAAAATTGT+GGG | 0.416123 | 5:-81755778 | None:intergenic |
AACAGATTTCTTTCAAATGT+AGG | 0.424636 | 5:-81755876 | None:intergenic |
GTATGTAAATCTTCTAGAAC+TGG | 0.435027 | 5:-81755940 | None:intergenic |
TGCATGACTTTATTGATGGC+TGG | 0.443969 | 5:+81756190 | MsG0580028519.01.T01:CDS |
AGATTATTAATTGCATCAAA+AGG | 0.457631 | 5:-81756081 | None:intergenic |
GCTCTAACCAACTTTGAAAA+GGG | 0.462352 | 5:-81756036 | None:intergenic |
TGCAGTCATGTGTTCTCCTC+GGG | 0.476557 | 5:+81755597 | MsG0580028519.01.T01:CDS |
TTCATTATTGTGAGAAAGGT+AGG | 0.482675 | 5:+81755662 | MsG0580028519.01.T01:CDS |
GACTTTATTGATGGCTGGAA+TGG | 0.484192 | 5:+81756195 | MsG0580028519.01.T01:CDS |
CTCAAGTTTCAGAACAACTA+GGG | 0.498410 | 5:-81755800 | None:intergenic |
CGCGACACAGCGCCGAGTTG+AGG | 0.510117 | 5:+81755711 | MsG0580028519.01.T01:CDS |
TCTCAAGTTTCAGAACAACT+AGG | 0.513803 | 5:-81755801 | None:intergenic |
ATGCAGTCATGTGTTCTCCT+CGG | 0.523204 | 5:+81755596 | MsG0580028519.01.T01:CDS |
CTCAACTCGGCGCTGTGTCG+CGG | 0.532818 | 5:-81755710 | None:intergenic |
TTTATTGATGGCTGGAATGG+TGG | 0.563639 | 5:+81756198 | MsG0580028519.01.T01:CDS |
ATTGATGGCTGGAATGGTGG+TGG | 0.565871 | 5:+81756201 | MsG0580028519.01.T01:CDS |
GAAGAAAATAATGCAGCGGA+AGG | 0.572516 | 5:+81756006 | MsG0580028519.01.T01:CDS |
CAGAACAACTAGGGTTTGGG+AGG | 0.591012 | 5:-81755791 | None:intergenic |
GGTTTGGGAGGTGAAAATTG+TGG | 0.591857 | 5:-81755779 | None:intergenic |
TGAGTTTCTTTGCATACGCG+TGG | 0.602883 | 5:+81756104 | MsG0580028519.01.T01:CDS |
ATGGGTTGGTTTATTTCCCG+AGG | 0.607650 | 5:-81755613 | None:intergenic |
AAGAAAATAATGCAGCGGAA+GGG | 0.629433 | 5:+81756007 | MsG0580028519.01.T01:CDS |
TTTAATCTCTCGATAGTCAG+TGG | 0.652814 | 5:+81755736 | MsG0580028519.01.T01:CDS |
AGTTGAAGAAAATAATGCAG+CGG | 0.658593 | 5:+81756002 | MsG0580028519.01.T01:CDS |
AATTGTGGGATTCAACATGA+AGG | 0.662017 | 5:-81755764 | None:intergenic |
AGAGATTAAATTCCTCAACT+CGG | 0.663070 | 5:-81755723 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTTAATTCACATTAAACTA+TGG | + | Chr5:81756166-81756185 | MsG0580028519.01.T01:CDS | 20.0% |
!! | AGATTATTAATTGCATCAAA+AGG | - | Chr5:81756084-81756103 | None:intergenic | 20.0% |
!! | TTAAGTACAAGAATGATTTA+AGG | + | Chr5:81755899-81755918 | MsG0580028519.01.T01:CDS | 20.0% |
!!! | TGAATTAAGTTTTGAAACAA+TGG | - | Chr5:81756156-81756175 | None:intergenic | 20.0% |
! | AACAGATTTCTTTCAAATGT+AGG | - | Chr5:81755879-81755898 | None:intergenic | 25.0% |
! | GATTTAAGGAAACTTCTTAA+TGG | + | Chr5:81755913-81755932 | MsG0580028519.01.T01:CDS | 25.0% |
!! | AGTTTTCATTATTGTGAGAA+AGG | + | Chr5:81755658-81755677 | MsG0580028519.01.T01:CDS | 25.0% |
!!! | TAAGTTTTGAAACAATGGAA+TGG | - | Chr5:81756151-81756170 | None:intergenic | 25.0% |
!!! | TTGATATGAAACGTTTTGAT+GGG | - | Chr5:81755634-81755653 | None:intergenic | 25.0% |
AGAGATTAAATTCCTCAACT+CGG | - | Chr5:81755726-81755745 | None:intergenic | 30.0% | |
AGTTGAAGAAAATAATGCAG+CGG | + | Chr5:81756002-81756021 | MsG0580028519.01.T01:CDS | 30.0% | |
GAAAAAGAACTTGAAGCTTT+GGG | - | Chr5:81756246-81756265 | None:intergenic | 30.0% | |
TGAAAAAGAACTTGAAGCTT+TGG | - | Chr5:81756247-81756266 | None:intergenic | 30.0% | |
TTCATTATTGTGAGAAAGGT+AGG | + | Chr5:81755662-81755681 | MsG0580028519.01.T01:CDS | 30.0% | |
! | GTTGATATGAAACGTTTTGA+TGG | - | Chr5:81755635-81755654 | None:intergenic | 30.0% |
! | GTTTAAACCCTTTTCAAAGT+TGG | + | Chr5:81756029-81756048 | MsG0580028519.01.T01:CDS | 30.0% |
!! | AAATGTAGGATTTTGAGAGA+TGG | - | Chr5:81755865-81755884 | None:intergenic | 30.0% |
!! | GTATGTAAATCTTCTAGAAC+TGG | - | Chr5:81755943-81755962 | None:intergenic | 30.0% |
AAGAAAATAATGCAGCGGAA+GGG | + | Chr5:81756007-81756026 | MsG0580028519.01.T01:CDS | 35.0% | |
AATTGTGGGATTCAACATGA+AGG | - | Chr5:81755767-81755786 | None:intergenic | 35.0% | |
CTCAAGTTTCAGAACAACTA+GGG | - | Chr5:81755803-81755822 | None:intergenic | 35.0% | |
TCTCAAGTTTCAGAACAACT+AGG | - | Chr5:81755804-81755823 | None:intergenic | 35.0% | |
TGGTTGCATGACTTTATTGA+TGG | + | Chr5:81756186-81756205 | MsG0580028519.01.T01:CDS | 35.0% | |
TTTAATCTCTCGATAGTCAG+TGG | + | Chr5:81755736-81755755 | MsG0580028519.01.T01:CDS | 35.0% | |
TTTCAGAACAACTAGGGTTT+GGG | - | Chr5:81755797-81755816 | None:intergenic | 35.0% | |
! | GCTCTAACCAACTTTGAAAA+GGG | - | Chr5:81756039-81756058 | None:intergenic | 35.0% |
! | TAGGACTATTTTCGATGCAT+GGG | + | Chr5:81755681-81755700 | MsG0580028519.01.T01:CDS | 35.0% |
! | TGCTCTAACCAACTTTGAAA+AGG | - | Chr5:81756040-81756059 | None:intergenic | 35.0% |
!! | TATGAAACGTTTTGATGGGT+TGG | - | Chr5:81755630-81755649 | None:intergenic | 35.0% |
GAAGAAAATAATGCAGCGGA+AGG | + | Chr5:81756006-81756025 | MsG0580028519.01.T01:CDS | 40.0% | |
GTTTCAGAACAACTAGGGTT+TGG | - | Chr5:81755798-81755817 | None:intergenic | 40.0% | |
GTTTGGGAGGTGAAAATTGT+GGG | - | Chr5:81755781-81755800 | None:intergenic | 40.0% | |
! | GACTTTATTGATGGCTGGAA+TGG | + | Chr5:81756195-81756214 | MsG0580028519.01.T01:CDS | 40.0% |
! | GTAGGACTATTTTCGATGCA+TGG | + | Chr5:81755680-81755699 | MsG0580028519.01.T01:CDS | 40.0% |
! | TGCATGACTTTATTGATGGC+TGG | + | Chr5:81756190-81756209 | MsG0580028519.01.T01:CDS | 40.0% |
! | TTTATTGATGGCTGGAATGG+TGG | + | Chr5:81756198-81756217 | MsG0580028519.01.T01:CDS | 40.0% |
ATGCAGTCATGTGTTCTCCT+CGG | + | Chr5:81755596-81755615 | MsG0580028519.01.T01:CDS | 45.0% | |
GGTTTGGGAGGTGAAAATTG+TGG | - | Chr5:81755782-81755801 | None:intergenic | 45.0% | |
TGAGTTTCTTTGCATACGCG+TGG | + | Chr5:81756104-81756123 | MsG0580028519.01.T01:CDS | 45.0% | |
!! | ATGGGTTGGTTTATTTCCCG+AGG | - | Chr5:81755616-81755635 | None:intergenic | 45.0% |
CAGAACAACTAGGGTTTGGG+AGG | - | Chr5:81755794-81755813 | None:intergenic | 50.0% | |
TGCAGTCATGTGTTCTCCTC+GGG | + | Chr5:81755597-81755616 | MsG0580028519.01.T01:CDS | 50.0% | |
! | ATTGATGGCTGGAATGGTGG+TGG | + | Chr5:81756201-81756220 | MsG0580028519.01.T01:CDS | 50.0% |
!! | CTTGAAGCTTTGGGCAATGC+TGG | - | Chr5:81756237-81756256 | None:intergenic | 50.0% |
CTCAACTCGGCGCTGTGTCG+CGG | - | Chr5:81755713-81755732 | None:intergenic | 65.0% | |
! | CGCGACACAGCGCCGAGTTG+AGG | + | Chr5:81755711-81755730 | MsG0580028519.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 81755589 | 81756269 | 81755589 | ID=MsG0580028519.01;Name=MsG0580028519.01 |
Chr5 | mRNA | 81755589 | 81756269 | 81755589 | ID=MsG0580028519.01.T01;Parent=MsG0580028519.01;Name=MsG0580028519.01.T01;_AED=0.47;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|226 |
Chr5 | exon | 81755589 | 81756269 | 81755589 | ID=MsG0580028519.01.T01:exon:32976;Parent=MsG0580028519.01.T01 |
Chr5 | CDS | 81755589 | 81756269 | 81755589 | ID=MsG0580028519.01.T01:cds;Parent=MsG0580028519.01.T01 |
Gene Sequence |
Protein sequence |