AlfalfaGEDB | Msa1228870

M. sativa cultivar zhongmu-4 / Msa1228870

KEGG: K02214
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228870	XP_013443851.1	95.772	1088	44	2	1	1087	1	1087	0.0	2107

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228870	sp\|Q54DK3\|CDC7_DICDI	35.948	153	75	6	918	1060	910	1049	2.55e-15	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228870	A0A072TL24	95.772	1088	44	2	1	1087	1	1087	0.0	2107

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa1228870	0.828516	8.608423e-55	-8.615850e-47
Msa0027280	Msa1228870	0.831158	1.956274e-55	-8.615850e-47
Msa0035060	Msa1228870	0.827783	1.292904e-54	-8.615850e-47
Msa0035140	Msa1228870	0.815622	8.412891e-52	-8.615850e-47
Msa0036870	Msa1228870	0.803709	3.063525e-49	-8.615850e-47
Msa0042640	Msa1228870	0.803536	3.327455e-49	-8.615850e-47
Msa0048510	Msa1228870	0.823391	1.420776e-53	-8.615850e-47
Msa0068150	Msa1228870	0.819047	1.425445e-52	-8.615850e-47
Msa0077340	Msa1228870	0.804449	2.148284e-49	-8.615850e-47
Msa0077560	Msa1228870	0.844144	9.065604e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228870	MtrunA17_Chr8g0335661	95.772	1088	44	2	1	1087	1	1087	0.0	2107
Msa1228870	MtrunA17_Chr4g0045841	29.091	165	95	5	905	1065	200	346	7.22e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228870	AT4G16970.1	54.373	526	213	8	555	1074	367	871	0.0	556

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Find 273 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATGTAAATAATGAG+CGG	0.651500	8_2:+4483583	Msa1228870:CDS
AAAAGAAATTGCCAAATTGC+GGG	0.357929	8_2:+4486650	Msa1228870:CDS
AAAAGAGAGGGTCCATGTGT+TGG	0.577815	8_2:+4485482	Msa1228870:CDS
AAAAGGAGTAGGAGCGGAGC+GGG	0.458873	8_2:-4479983	None:intergenic
AAAAGGGTTACTGCTCCTTC+AGG	0.418092	8_2:+4485271	Msa1228870:CDS
AAACCCTTTGTTCCAACACA+TGG	0.534397	8_2:-4485494	None:intergenic
AAACCTTCTCGCACATTGAA+GGG	0.499606	8_2:+4482338	Msa1228870:CDS
AAAGAAATTGCCAAATTGCG+GGG	0.650726	8_2:+4486651	Msa1228870:CDS
AAAGGAATTTACCACTGGAA+AGG	0.583882	8_2:-4486721	None:intergenic
AAAGGGTTTCCGTGCCCCGG+AGG	0.686493	8_2:+4485508	Msa1228870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAATCCGTTACTGTTAA+CGG	-	chr8_2:4480283-4480302	None:intergenic	30.0%
TATTATGCACGTAGAATCAT+AGG	+	chr8_2:4480906-4480925	Msa1228870:intron	30.0%
ACTAAATCGCATACCAATAA+TGG	-	chr8_2:4481023-4481042	None:intergenic	30.0%
GATTCATAACACTGTTTGAT+TGG	+	chr8_2:4481133-4481152	Msa1228870:intron	30.0%
GTTGTATTTCATGCTGAATT+TGG	+	chr8_2:4481376-4481395	Msa1228870:intron	30.0%
CCAATTGAATCAATACGTAT+AGG	-	chr8_2:4481531-4481550	None:intergenic	30.0%
AGAACCGAATTTCAAATACA+GGG	+	chr8_2:4481569-4481588	Msa1228870:CDS	30.0%
ACTAATGAAGAAACTCTCAT+TGG	-	chr8_2:4481658-4481677	None:intergenic	30.0%
CATTACACAAAGATTGATCT+TGG	-	chr8_2:4481764-4481783	None:intergenic	30.0%
TAATTAACCAATCCTTCCTT+TGG	-	chr8_2:4481963-4481982	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	4479949	4488015	4479949	ID=Msa1228870;Name=Msa1228870
chr8_2	mRNA	4479949	4488015	4479949	ID=Msa1228870-mRNA-1;Parent=Msa1228870;Name=Msa1228870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135\|1\|1\|1\|1\|1\|15\|272\|1087
chr8_2	exon	4479949	4480414	4479949	ID=Msa1228870-mRNA-1:exon:1449;Parent=Msa1228870-mRNA-1
chr8_2	exon	4480514	4480572	4480514	ID=Msa1228870-mRNA-1:exon:1450;Parent=Msa1228870-mRNA-1
chr8_2	exon	4481432	4482766	4481432	ID=Msa1228870-mRNA-1:exon:1451;Parent=Msa1228870-mRNA-1
chr8_2	exon	4482893	4482953	4482893	ID=Msa1228870-mRNA-1:exon:1452;Parent=Msa1228870-mRNA-1
chr8_2	exon	4483038	4483100	4483038	ID=Msa1228870-mRNA-1:exon:1453;Parent=Msa1228870-mRNA-1
chr8_2	exon	4483562	4483625	4483562	ID=Msa1228870-mRNA-1:exon:1454;Parent=Msa1228870-mRNA-1
chr8_2	exon	4483707	4483800	4483707	ID=Msa1228870-mRNA-1:exon:1455;Parent=Msa1228870-mRNA-1
chr8_2	exon	4484069	4484152	4484069	ID=Msa1228870-mRNA-1:exon:1456;Parent=Msa1228870-mRNA-1
chr8_2	exon	4484239	4484328	4484239	ID=Msa1228870-mRNA-1:exon:1457;Parent=Msa1228870-mRNA-1
chr8_2	exon	4484416	4484443	4484416	ID=Msa1228870-mRNA-1:exon:1458;Parent=Msa1228870-mRNA-1
chr8_2	exon	4484852	4485376	4484852	ID=Msa1228870-mRNA-1:exon:1459;Parent=Msa1228870-mRNA-1
chr8_2	exon	4485468	4485529	4485468	ID=Msa1228870-mRNA-1:exon:1460;Parent=Msa1228870-mRNA-1
chr8_2	exon	4486460	4486569	4486460	ID=Msa1228870-mRNA-1:exon:1461;Parent=Msa1228870-mRNA-1
chr8_2	exon	4486644	4486731	4486644	ID=Msa1228870-mRNA-1:exon:1462;Parent=Msa1228870-mRNA-1
chr8_2	exon	4487474	4488015	4487474	ID=Msa1228870-mRNA-1:exon:1463;Parent=Msa1228870-mRNA-1
chr8_2	five_prime_UTR	4479949	4480083	4479949	ID=Msa1228870-mRNA-1:five_prime_utr;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4480084	4480414	4480084	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4480514	4480572	4480514	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4481432	4482766	4481432	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4482893	4482953	4482893	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4483038	4483100	4483038	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4483562	4483625	4483562	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4483707	4483800	4483707	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4484069	4484152	4484069	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4484239	4484328	4484239	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4484416	4484443	4484416	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4484852	4485376	4484852	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4485468	4485529	4485468	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4486460	4486569	4486460	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4486644	4486731	4486644	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	CDS	4487474	4487743	4487474	ID=Msa1228870-mRNA-1:cds;Parent=Msa1228870-mRNA-1
chr8_2	three_prime_UTR	4487744	4488015	4487744	ID=Msa1228870-mRNA-1:three_prime_utr;Parent=Msa1228870-mRNA-1

Gene Sequence

>Msa1228870

ATGTCTCCGCCGGAACCACCACCGCAACTCGCCGATCCAACCCCACTCCTCGAAGACCAATCCTGGCACCTCCTCTCTCTCCTCCTCCAGATCGGTCATCCCGTCGACGCGGAGTATCTTTCCCTTCGTTGCCGCTTCTTCAACGCTTCGCCGGATTTCGTCCGTCACGTTGCTTCACTTCCTGATTCTCCTCTCTCCGTTAACAGTAACGGATTTCTAACTCCTTCCGTTGAAGCTGCTTTCGCCATGGCTAGGTTTTTCTCATTTCAGTTCCAAAATTCAACTCCGTTTCACTCCCGTAAACGCAAGTCAATTTGCTCAATCACTCAAGGTGGAAGAGATCCGAAACGGCTTGCAATTGGTGATAAAGTTCCAGAAATTTTCGTTAAGAGTTTTGCTGATACTACTGCAGAGGCTGTTATGAGAAAAAGTTTCTGTGCAATGAAATTTGAGTCTCGGATTGTAAATGGTGGGAATTATATGATTCCTATACGTATTGATTCAATTGGAGAATGTTCAGGTTGTTCAGAACCGAATTTCAAATACAGGGAAGCTGATAATGACGGCATAACAAGCATGGTCAAAGGAGAGATATCTGGCTCTCTTATCAAAGCCAATGAGAGTTTCTTCATTAGTGAAAGTGACTCGAGGAAGCTCGAGGGTCTAGATAGATTCGTGGGACATAATCCCTTTGCTAATCTTGCTCCACCAACTAGTGTCCAAGATCAATCTTTGTGTAATGATGATGTTGTTGGTATTGGATCAGAGGACAAAATGGATTGCTTTGACTCATTTGGGAATGAATATCCTGAACAAAACATAACCCCTACTGTGGATGGTGAAAAGGTTTGTCGAAATAATACTTGCAGAGATTCACTACTAGAATCTAATGAAATAAATAAAGAAGAGAAAAGAGGTCCAAAGGAAGGATTGGTTAATTATGAGAATGATAGAGAGATGGAAGATGTTGCTCAAAGGGTCGATCCTGTAGCATGTGGAGAAGATCCGACAGATGTTTTGGAATTGGAAAAGGGTATAATAAGAGAATCTATTGAAAAATATAAAGAGGAAAGAGGTTTGAAGGAAGGAATGATTAACTATGACAAAAATGAAGAGATGGAAGATGTTGCTCTGAGGGCCAATCCTGTAGTATGTGGAGAAGAGCCAACAAAAGTTTTGGAATTGAAAAAGGGCATGCATGTATTAGATTTGGATACAAACAAGACAGTGAGAAAAATGGTGACCCGGTCTACAAATAAAATAGCTCAGTCCTCTTCAAATCCAAAGCAGCTTCTGAAACCTTCTCGCACATTGAAGGGGGGACAGAAAAATGATCTACACTCTAAGCCTCAAATTCTAACCGAGTCACTAGCCTGTAACAAATTTGATAATGTTCCAAAAAAAATTGATCAAAGTAATGATCAGAACATTATTGAAGGTGATGAAGGTAAGGATCAGAACATGGTGACCCAGTCTAACAATAAAGTAGCTCAGCCCTCTTCAAATCCAAAGCAGCTTCTGAAATCTTCTCGCATGTTGAAGGATGGACAGAAACATGATCTACACTCAAAGACTCAAAATCTAACTGAGTCACTAGCCTGTAACAAATCTGATAATGTTCCAAAAAAAATTGATCAAGGTCATGATCAGAGTATTATTTCAAAAAACAAAATAAAACAAAGTCGTAAAGAAAACGCGACAGAAGATAACTTCATGACTTCTAAGGTAGAGAAAAAAACATTTCCATCTTTTGAATCTTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCTCATAGAACAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGCAATGCTCATAAAAACCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAACTGTATTATAAAGTTTGAAGGTTCTTTCAAAAGTGGCAACAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGAGAGACCTGAGGTTTTGAAAAAAGAAATTGATATATGTGAGCTTCAATGGTATGGGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAAAGAGGGAGTTGTTCACAGAGATGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTACCTTATCGACTTCAACCTTGCCATGGATTTGAAGCAGAAGTACAACATCGGAAGTAAATCAAAACCAAGGCTTGATGCATCCAGTAATATTCCTCTCCCGTCTGGTTCTTCCCCTGTGGTCCAAGACAAGAATCTTGGAGGAATCAAGGCTCTAACATCCAATAAAAGGGAATTGCCAGATCTGGCAGATCGTAGGAAATATTATGAAATTCGTAAGCATATGAAGGCAAAAGCGGATGCTGGTCATCTGAAAAATTGTCCCGATAAGGCTGTTGCGAATTTACGTAGAGCACAAGGAGCAGATGGCTCGGGTATAACCTCTGCCAGAGATGTTACTAGCACTAAGACTGCTTCTGGCGATAGGCTCCGAGAACCCATACCCTTCAAAGGAAGAAAGGAGCTTATCAGCCTCGTGCAGAATTCTATGCAATGTGCAAACAATAGTTCAATGAAAAGTCCTTCTTCTCAGAGGAAAAGGGTTACTGCTCCTTCAGGCAAGGTAGATGGCAGGACGCTTTATCTTACGCCAATGCCTATACATTCATCTACGGTTGCTTTGGGGTTATTAAGAAGCAAAGGGGACGGAAAACATAAAAGAGAGGGTCCATGTGTTGGAACAAAGGGTTTCCGTGCCCCGGAGGTTTTGTTCAGATCTCAGTTTCAGGGCCCTAAGGTTGATATTTGGTCGGCTGGAGTCACTCTACTATACATGCTGATTGGGAAAACTTCTTTCCCTGGCGAACCAGAACAGAGTTTAAAAGAAATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAGGTGGCCAAGCTGCATGACCGTGAAACATCCTTTCCAGTGGAGTTATTTGATGACCGATACTTGCAATCATATGACATAGAAACCTGGTGCAAGTTGCACACAAAGAGACCAGAGTTTGTTGATAAAATCCCGAAATCATTGTTTGATTTAATAGAGAAGTGCCTAACAGTAAACCCAAGGAATAGGATTAGTGTTGAAGATGTTCTCAGGCATGAGTTTTTTGCCTCGTGTAATGAGATCATGAGAAAGACAAGGATGCTTCAACGAGGACTTGGCTTAGAAACTGCAGCAGATTCAAGAGCAGTCTGA

Protein sequence

>Msa1228870

MSPPEPPPQLADPTPLLEDQSWHLLSLLLQIGHPVDAEYLSLRCRFFNASPDFVRHVASLPDSPLSVNSNGFLTPSVEAAFAMARFFSFQFQNSTPFHSRKRKSICSITQGGRDPKRLAIGDKVPEIFVKSFADTTAEAVMRKSFCAMKFESRIVNGGNYMIPIRIDSIGECSGCSEPNFKYREADNDGITSMVKGEISGSLIKANESFFISESDSRKLEGLDRFVGHNPFANLAPPTSVQDQSLCNDDVVGIGSEDKMDCFDSFGNEYPEQNITPTVDGEKVCRNNTCRDSLLESNEINKEEKRGPKEGLVNYENDREMEDVAQRVDPVACGEDPTDVLELEKGIIRESIEKYKEERGLKEGMINYDKNEEMEDVALRANPVVCGEEPTKVLELKKGMHVLDLDTNKTVRKMVTRSTNKIAQSSSNPKQLLKPSRTLKGGQKNDLHSKPQILTESLACNKFDNVPKKIDQSNDQNIIEGDEGKDQNMVTQSNNKVAQPSSNPKQLLKSSRMLKDGQKHDLHSKTQNLTESLACNKSDNVPKKIDQGHDQSIISKNKIKQSRKENATEDNFMTSKVEKKTFPSFESFIIEEEEGSGGYGIVYRAHRTTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKNCIIKFEGSFKSGNSDCFVLEHVEHERPEVLKKEIDICELQWYGFCMFKALACLHKEGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPRLDASSNIPLPSGSSPVVQDKNLGGIKALTSNKRELPDLADRRKYYEIRKHMKAKADAGHLKNCPDKAVANLRRAQGADGSGITSARDVTSTKTASGDRLREPIPFKGRKELISLVQNSMQCANNSSMKSPSSQRKRVTAPSGKVDGRTLYLTPMPIHSSTVALGLLRSKGDGKHKREGPCVGTKGFRAPEVLFRSQFQGPKVDIWSAGVTLLYMLIGKTSFPGEPEQSLKEIAKLRGSEELWEVAKLHDRETSFPVELFDDRYLQSYDIETWCKLHTKRPEFVDKIPKSLFDLIEKCLTVNPRNRISVEDVLRHEFFASCNEIMRKTRMLQRGLGLETAADSRAV*