AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760350 MtrunA17_Chr5g0409071 93.046 302 20 1 1 301 1 302 2.48e-175 486
Msa0760350 MtrunA17_Chr4g0006261 49.804 255 108 6 44 296 40 276 3.79e-55 180
Msa0760350 MtrunA17_Chr7g0242591 46.154 273 130 5 28 299 35 291 6.43e-50 167
Msa0760350 MtrunA17_Chr3g0123021 50.820 61 30 0 46 106 77 137 5.46e-14 71.6
Msa0760350 MtrunA17_Chr2g0290511 31.193 109 66 2 30 129 241 349 4.30e-13 68.9
Msa0760350 MtrunA17_Chr1g0201911 33.684 95 60 1 41 132 368 462 1.77e-12 67.8
Msa0760350 MtrunA17_Chr1g0201941 33.696 92 56 3 46 133 455 545 4.31e-11 63.5
Msa0760350 MtrunA17_Chr6g0463941 34.066 91 55 3 46 132 465 554 7.98e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760350 AT2G38250.1 42.199 282 138 6 26 301 26 288 9.48e-47 159
Msa0760350 AT5G01380.1 39.249 293 151 7 26 301 33 315 1.01e-39 142
Msa0760350 AT1G13450.3 34.043 141 87 3 46 183 87 224 8.04e-16 76.3
Msa0760350 AT1G13450.2 34.043 141 87 3 46 183 87 224 8.04e-16 76.3
Msa0760350 AT1G13450.4 33.333 135 86 2 46 179 87 218 2.57e-15 74.3
Msa0760350 AT1G13450.1 34.043 141 87 3 46 183 87 224 2.75e-15 76.3
Msa0760350 AT3G25990.1 39.785 93 48 2 46 132 55 145 2.06e-14 73.2
Msa0760350 AT1G76890.2 34.746 118 72 3 19 132 371 487 2.23e-13 70.9
Msa0760350 AT1G76880.1 34.579 107 60 4 30 132 398 498 2.99e-11 64.3

Find 101 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATGAGTTTGTTTAAA+AGG 0.131414 5_2:+16756986 None:intergenic
ACGTCGTGTTGATTGAAATT+AGG 0.184389 5_2:+16759277 None:intergenic
GTTGATTGAAATTAGGGTTT+TGG 0.241418 5_2:+16759284 None:intergenic
CGTCGTGTTGATTGAAATTA+GGG 0.264593 5_2:+16759278 None:intergenic
GGGCATTGCTTGCCATGTTC+TGG 0.286225 5_2:+16757522 None:intergenic
GAATTATGGAAAGGAGTATT+TGG 0.286683 5_2:-16756834 Msa0760350:three_prime_UTR
CACTTGCATTTACACTGTTC+AGG 0.319358 5_2:+16758964 None:intergenic
AGATGAGGGAGAGAGGGTAT+AGG 0.349714 5_2:-16758993 Msa0760350:CDS
TTGCATGTTATGTGCTCTTT+CGG 0.352391 5_2:+16757470 None:intergenic
AGTGAAGACGGCAATATATA+AGG 0.353056 5_2:+16756624 None:intergenic
TGTTTGAGCTGAACGAGTTT+CGG 0.362003 5_2:+16757431 None:intergenic
CGAGAAGCAATACACGTAAA+AGG 0.365476 5_2:-16757311 Msa0760350:CDS
GAGACTGAGGGAGGAGAATA+GGG 0.379742 5_2:-16757037 Msa0760350:CDS
GGAGACTGAGGGAGGAGAAT+AGG 0.381910 5_2:-16757038 Msa0760350:CDS
GGTGAATGAAGAAAGGAGTT+AGG 0.385767 5_2:-16756813 Msa0760350:three_prime_UTR
TGAAAGACTGTTGTTTGAAC+AGG 0.386468 5_2:-16757139 Msa0760350:CDS
CGAAGAGGAACAAGACGCTT+TGG 0.389395 5_2:-16759032 Msa0760350:CDS
GAATCTTGTTAACCGCTATA+AGG 0.392727 5_2:-16758938 Msa0760350:intron
GAAGAGGAACAAGACGCTTT+GGG 0.393679 5_2:-16759031 Msa0760350:CDS
TTATTTAGGGATACATCTCT+TGG 0.410510 5_2:-16756716 Msa0760350:three_prime_UTR
ATGAATGAGTTTGTTTAAAA+GGG 0.419814 5_2:+16756987 None:intergenic
CCGAAAATGTACGGCGGCGG+TGG 0.422205 5_2:-16759240 Msa0760350:exon
GGAGAGATTAATGACTGAAC+AGG 0.422714 5_2:-16757085 Msa0760350:CDS
ATCTCTTGGGCATCAAGTCC+AGG 0.426011 5_2:-16756702 Msa0760350:three_prime_UTR
ATCTAACTAAATGAGTCAAC+TGG 0.441945 5_2:-16756962 Msa0760350:exon
GGAAAGGATTTGAATACTAT+AGG 0.446260 5_2:-16756792 Msa0760350:three_prime_UTR
CAAGAGAGTTCATAGCGATA+AGG 0.454890 5_2:-16759083 Msa0760350:CDS
GAACAAGACGCTTTGGGAAG+TGG 0.456312 5_2:-16759025 Msa0760350:CDS
AAGAGAGTTCATAGCGATAA+GGG 0.460403 5_2:-16759082 Msa0760350:CDS
AGTTCGAAGATGAGGGAGAG+AGG 0.463651 5_2:-16759000 Msa0760350:CDS
CATAGCGATAAGGGCGGAGC+TGG 0.469611 5_2:-16759073 Msa0760350:CDS
TGACTCCACTGCGGCTGAGC+TGG 0.474490 5_2:+16759114 None:intergenic
ACAGGAATGGCGGCAGTCAA+TGG 0.476521 5_2:-16757121 Msa0760350:CDS
AAAATGTACGGCGGCGGTGG+AGG 0.483528 5_2:-16759237 Msa0760350:CDS
AGGAGAATAGGGCAGAGAGA+AGG 0.485185 5_2:-16757026 Msa0760350:CDS
ACTAAATGAGTCAACTGGAT+TGG 0.485191 5_2:-16756957 Msa0760350:exon
GGAGAATAGGGCAGAGAGAA+GGG 0.485668 5_2:-16757025 Msa0760350:CDS
AGTGGTGAGTTCGAAGATGA+GGG 0.492563 5_2:-16759007 Msa0760350:CDS
TGAGGGAGAGAGGGTATAGG+AGG 0.495279 5_2:-16758990 Msa0760350:CDS
TCAGCCGCAGTGGAGTCAGC+AGG 0.495729 5_2:-16759109 Msa0760350:CDS
AAGTGGTGAGTTCGAAGATG+AGG 0.496550 5_2:-16759008 Msa0760350:CDS
GATGCAGTGGAGGGAGGTGA+TGG 0.497935 5_2:-16757175 Msa0760350:CDS
GACGGCAATATATAAGGTAT+AGG 0.502066 5_2:+16756630 None:intergenic
CGTTCAGCTCAAACAAAGAA+AGG 0.504192 5_2:-16757423 Msa0760350:CDS
CTCTCCTCTCTCACCGCCGC+AGG 0.504269 5_2:+16759141 None:intergenic
TATTTAGGGATACATCTCTT+GGG 0.504408 5_2:-16756715 Msa0760350:three_prime_UTR
CGGTGGAGGAGACGATGCTC+TGG 0.506430 5_2:-16759223 Msa0760350:CDS
GACTGTTGTTTGAACAGGAA+TGG 0.512065 5_2:-16757134 Msa0760350:CDS
AGTATTTGGTGAATGAAGAA+AGG 0.513284 5_2:-16756820 Msa0760350:three_prime_UTR
TTGCAACGGAGAAGTCTTCA+AGG 0.514215 5_2:-16757275 Msa0760350:CDS
GTCTCCTGCGGCGGTGAGAG+AGG 0.514521 5_2:-16759145 Msa0760350:CDS
GAGGGAGGTGATGGATAGGC+GGG 0.534087 5_2:-16757166 Msa0760350:CDS
GTGACGGTGGTACTATTCCT+AGG 0.542490 5_2:+16759193 None:intergenic
GGAGGGAAAGAGAAGAGCAT+AGG 0.544277 5_2:-16757059 Msa0760350:CDS
GATGCTCTGGCAGCTCGCCT+AGG 0.545974 5_2:-16759210 Msa0760350:CDS
CATCAAGTCCAGGGATATGT+TGG 0.547748 5_2:-16756692 Msa0760350:three_prime_UTR
CGATAAGGGCGGAGCTGGAG+AGG 0.548497 5_2:-16759068 Msa0760350:CDS
TTACGTGTATTGCTTCTCGC+AGG 0.548915 5_2:+16757315 None:intergenic
GGAGTGAAGAAAATAAGAAG+TGG 0.551182 5_2:-16757402 Msa0760350:CDS
AATACACGTAAAAGGAAAGC+TGG 0.551659 5_2:-16757303 Msa0760350:CDS
GGAGGGAGGTGATGGATAGG+CGG 0.554166 5_2:-16757167 Msa0760350:CDS
GGGTACCAGCTCAGCCGCAG+TGG 0.554507 5_2:-16759119 Msa0760350:CDS
GATAAGGGCGGAGCTGGAGA+GGG 0.555293 5_2:-16759067 Msa0760350:CDS
GTTCGAAGATGAGGGAGAGA+GGG 0.555989 5_2:-16758999 Msa0760350:CDS
AATGGAGATGCAGTGGAGGG+AGG 0.556920 5_2:-16757181 Msa0760350:CDS
CTTTACAACCAACATATCCC+TGG 0.557408 5_2:+16756684 None:intergenic
GATTAATGACTGAACAGGAA+TGG 0.560577 5_2:-16757080 Msa0760350:CDS
AATTGAAGATGACAGTGAAG+AGG 0.562094 5_2:-16757343 Msa0760350:CDS
GGAGACATCAACGACGATGT+CGG 0.566477 5_2:+16759162 None:intergenic
CTGAACAGTGTAAATGCAAG+TGG 0.574316 5_2:-16758963 Msa0760350:CDS
TCTCTTGGGCATCAAGTCCA+GGG 0.577482 5_2:-16756701 Msa0760350:three_prime_UTR
CTGAGAATTCGTCAGAGGAT+CGG 0.577596 5_2:+16757376 None:intergenic
TGCGGCGGTGAGAGAGGAGA+GGG 0.582596 5_2:-16759139 Msa0760350:CDS
AATGACTGAACAGGAATGGA+GGG 0.589645 5_2:-16757076 Msa0760350:CDS
GATTACACAGAATTATGGAA+AGG 0.591624 5_2:-16756843 Msa0760350:three_prime_UTR
TAATGACTGAACAGGAATGG+AGG 0.591679 5_2:-16757077 Msa0760350:CDS
ATGAAGAAAGGAGTTAGGAA+AGG 0.595085 5_2:-16756808 Msa0760350:three_prime_UTR
AGTGGAGGGAGGTGATGGAT+AGG 0.596127 5_2:-16757170 Msa0760350:CDS
GAGAAGAGCATAGGAGACTG+AGG 0.597643 5_2:-16757050 Msa0760350:CDS
TGACAGAAACCGAAAATGTA+CGG 0.599687 5_2:-16759249 Msa0760350:exon
AGTCAATGGAAAAGCTTGAG+AGG 0.603425 5_2:-16757107 Msa0760350:CDS
GTCGTTGATGTCTCCTGCGG+CGG 0.605338 5_2:-16759154 Msa0760350:CDS
GTCAATGGAAAAGCTTGAGA+GGG 0.615909 5_2:-16757106 Msa0760350:CDS
CTGCGGCGGTGAGAGAGGAG+AGG 0.633062 5_2:-16759140 Msa0760350:CDS
TAATATTCAAGAAATGCTCA+AGG 0.634081 5_2:-16757226 Msa0760350:CDS
GAAAGCTGGCAAAATTGCAA+CGG 0.634262 5_2:-16757289 Msa0760350:CDS
AAAGAGCACATAACATGCAA+CGG 0.643374 5_2:-16757467 Msa0760350:CDS
AGAAGAGCATAGGAGACTGA+GGG 0.643488 5_2:-16757049 Msa0760350:CDS
GAGACATCTGATCCAGAACA+TGG 0.643952 5_2:-16757534 Msa0760350:CDS
ATCTTCTGAGAATTCGTCAG+AGG 0.649927 5_2:+16757371 None:intergenic
AGAGCATAGGAGACTGAGGG+AGG 0.658874 5_2:-16757046 Msa0760350:CDS
TGCAACGGAGAAGTCTTCAA+GGG 0.662323 5_2:-16757274 Msa0760350:CDS
GATGTCGGAATCAGAAGTGA+CGG 0.663943 5_2:+16759177 None:intergenic
ATCGTCGTTGATGTCTCCTG+CGG 0.674009 5_2:-16759157 Msa0760350:CDS
TGTTGTTTGAACAGGAATGG+CGG 0.675425 5_2:-16757131 Msa0760350:CDS
AAACCGAAAATGTACGGCGG+CGG 0.675954 5_2:-16759243 Msa0760350:exon
AGAGTTCATAGCGATAAGGG+CGG 0.691633 5_2:-16759079 Msa0760350:CDS
AAGAGAAAGATACCTTATAG+CGG 0.711707 5_2:+16758926 None:intergenic
GTCGGAATCAGAAGTGACGG+TGG 0.718058 5_2:+16759180 None:intergenic
GTCTCCTGCTGACTCCACTG+CGG 0.773488 5_2:+16759105 None:intergenic
CAGAAACCGAAAATGTACGG+CGG 0.798682 5_2:-16759246 Msa0760350:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATATGATTTTAAGTT+TGG - chr5_2:16759105-16759124 Msa0760350:CDS 10.0%
!!! AAAAATATTTTGAATTTGCA+GGG + chr5_2:16757449-16757468 None:intergenic 15.0%
!!! AAAAAATATTTTGAATTTGC+AGG + chr5_2:16757450-16757469 None:intergenic 15.0%
!!! ATAAGCTATATTTTGAATAT+TGG - chr5_2:16758394-16758413 Msa0760350:intron 15.0%
!!! TAAGCTATATTTTGAATATT+GGG - chr5_2:16758395-16758414 Msa0760350:intron 15.0%
!!! TTATATCTCAGTTTGTTTTT+AGG - chr5_2:16757359-16757378 Msa0760350:CDS 20.0%
!! CAAAAAATGTTATAATTGTG+TGG + chr5_2:16757403-16757422 None:intergenic 20.0%
!!! CACACAATTATAACATTTTT+TGG - chr5_2:16757401-16757420 Msa0760350:CDS 20.0%
!!! TTGAACAATTTTTGAATTTG+TGG - chr5_2:16757528-16757547 Msa0760350:CDS 20.0%
!!! TGAACAATTTTTGAATTTGT+GGG - chr5_2:16757529-16757548 Msa0760350:CDS 20.0%
!! AATACCAAATCATACATATT+GGG + chr5_2:16758284-16758303 None:intergenic 20.0%
!! AAATACCAAATCATACATAT+TGG + chr5_2:16758285-16758304 None:intergenic 20.0%
!!! AATATGTATGATTTGGTATT+TGG - chr5_2:16758284-16758303 Msa0760350:intron 20.0%
!!! AAGCTATATTTTGAATATTG+GGG - chr5_2:16758396-16758415 Msa0760350:intron 20.0%
!!! ATGAATGAGTTTGTTTAAAA+GGG + chr5_2:16759021-16759040 None:intergenic 20.0%
!!! AGCTTTTGTATTGATTATTT+AGG - chr5_2:16759275-16759294 Msa0760350:five_prime_UTR 20.0%
!!! GCTTTTGTATTGATTATTTA+GGG - chr5_2:16759276-16759295 Msa0760350:five_prime_UTR 20.0%
! GCTGAAACTAAAAAATGAAA+AGG + chr5_2:16756689-16756708 None:intergenic 25.0%
!! TTGATTGAAATTAGGGTTTT+GGG + chr5_2:16756723-16756742 None:intergenic 25.0%
! GTAGTGTTTAATAATGTAGT+TGG - chr5_2:16757170-16757189 Msa0760350:CDS 25.0%
! TGCATTGTTATAGTTTCATT+TGG - chr5_2:16757306-16757325 Msa0760350:CDS 25.0%
!! GAACAATTTTTGAATTTGTG+GGG - chr5_2:16757530-16757549 Msa0760350:CDS 25.0%
! AGGGTAATAAAAACAAATGT+TGG + chr5_2:16757625-16757644 None:intergenic 25.0%
! TTATTTATCCACAGTTCAAA+GGG + chr5_2:16757644-16757663 None:intergenic 25.0%
!!! TTTTTTTTGCATATGCATAG+GGG + chr5_2:16758260-16758279 None:intergenic 25.0%
!!! GTTTTTTTTGCATATGCATA+GGG + chr5_2:16758261-16758280 None:intergenic 25.0%
! ATACCAAATCATACATATTG+GGG + chr5_2:16758283-16758302 None:intergenic 25.0%
! AGTAAATGTAATCATGTTGT+TGG - chr5_2:16758314-16758333 Msa0760350:intron 25.0%
! GTAAATGTAATCATGTTGTT+GGG - chr5_2:16758315-16758334 Msa0760350:intron 25.0%
! CATGCAATTCTTCAAAAAAT+GGG + chr5_2:16758506-16758525 None:intergenic 25.0%
! TAATATTCAAGAAATGCTCA+AGG - chr5_2:16758779-16758798 Msa0760350:intron 25.0%
!! CATGAATGAGTTTGTTTAAA+AGG + chr5_2:16759022-16759041 None:intergenic 25.0%
!!! CTTTTGATTACACAGAATTA+TGG - chr5_2:16759157-16759176 Msa0760350:CDS 25.0%
!!! TTTCTTTTGAAAGTTGATAC+AGG - chr5_2:16759249-16759268 Msa0760350:exon 25.0%
!!! AAATTAGGGTTTTGGGAAAT+TGG + chr5_2:16756716-16756735 None:intergenic 30.0%
! GTTGATTGAAATTAGGGTTT+TGG + chr5_2:16756724-16756743 None:intergenic 30.0%
AAGAGAAAGATACCTTATAG+CGG + chr5_2:16757082-16757101 None:intergenic 30.0%
!! TCTTTGTGTTTTGAGCTTTT+AGG - chr5_2:16757098-16757117 Msa0760350:CDS 30.0%
!! CTTTGTGTTTTGAGCTTTTA+GGG - chr5_2:16757099-16757118 Msa0760350:CDS 30.0%
ATCGTTTGATTCCAATTTAG+TGG - chr5_2:16757237-16757256 Msa0760350:CDS 30.0%
TCGTTTGATTCCAATTTAGT+GGG - chr5_2:16757238-16757257 Msa0760350:CDS 30.0%
AAACACTTATCCCACTAAAT+TGG + chr5_2:16757251-16757270 None:intergenic 30.0%
ATTTGGAAGATGAACTAACA+GGG - chr5_2:16757323-16757342 Msa0760350:CDS 30.0%
! TTTTATTACCCTTTGAACTG+TGG - chr5_2:16757633-16757652 Msa0760350:intron 30.0%
CTTATTTATCCACAGTTCAA+AGG + chr5_2:16757645-16757664 None:intergenic 30.0%
GAACTGTGGATAAATAAGTA+TGG - chr5_2:16757647-16757666 Msa0760350:intron 30.0%
ATGAACTCAATGCAACATTA+TGG + chr5_2:16757674-16757693 None:intergenic 30.0%
ATATGAAACGTTGTGATGAT+TGG - chr5_2:16757696-16757715 Msa0760350:intron 30.0%
! AACATTGTGATGATGTGATT+TGG - chr5_2:16757738-16757757 Msa0760350:intron 30.0%
!!! GGTTTTTTTTGCATATGCAT+AGG + chr5_2:16758262-16758281 None:intergenic 30.0%
AAACCCCAATATGTATGATT+TGG - chr5_2:16758277-16758296 Msa0760350:intron 30.0%
GCATGCAATTCTTCAAAAAA+TGG + chr5_2:16758507-16758526 None:intergenic 30.0%
TTTCCAGTACCAACTAAAAA+TGG - chr5_2:16758806-16758825 Msa0760350:intron 30.0%
ATCTAACTAAATGAGTCAAC+TGG - chr5_2:16759043-16759062 Msa0760350:CDS 30.0%
GATTACACAGAATTATGGAA+AGG - chr5_2:16759162-16759181 Msa0760350:CDS 30.0%
!! GAATTATGGAAAGGAGTATT+TGG - chr5_2:16759171-16759190 Msa0760350:CDS 30.0%
! AGTATTTGGTGAATGAAGAA+AGG - chr5_2:16759185-16759204 Msa0760350:CDS 30.0%
GGAAAGGATTTGAATACTAT+AGG - chr5_2:16759213-16759232 Msa0760350:CDS 30.0%
TTATTTAGGGATACATCTCT+TGG - chr5_2:16759289-16759308 Msa0760350:five_prime_UTR 30.0%
TATTTAGGGATACATCTCTT+GGG - chr5_2:16759290-16759309 Msa0760350:five_prime_UTR 30.0%
!! CGTCGTGTTGATTGAAATTA+GGG + chr5_2:16756730-16756749 None:intergenic 35.0%
!! ACGTCGTGTTGATTGAAATT+AGG + chr5_2:16756731-16756750 None:intergenic 35.0%
TGACAGAAACCGAAAATGTA+CGG - chr5_2:16756756-16756775 Msa0760350:three_prime_UTR 35.0%
AAGAGAGTTCATAGCGATAA+GGG - chr5_2:16756923-16756942 Msa0760350:three_prime_UTR 35.0%
GAATCTTGTTAACCGCTATA+AGG - chr5_2:16757067-16757086 Msa0760350:CDS 35.0%
CATTTGGAAGATGAACTAAC+AGG - chr5_2:16757322-16757341 Msa0760350:CDS 35.0%
!! TTGTGATGATGTGATTTGGT+TGG - chr5_2:16757742-16757761 Msa0760350:intron 35.0%
! CTTTTGAATCACTCCAGTTA+GGG + chr5_2:16757831-16757850 None:intergenic 35.0%
GTGATCTCAGATTTCTTGAT+GGG + chr5_2:16757942-16757961 None:intergenic 35.0%
AGTGATCTCAGATTTCTTGA+TGG + chr5_2:16757943-16757962 None:intergenic 35.0%
TCAAATGCTAACTTGAGCTT+CGG - chr5_2:16758011-16758030 Msa0760350:intron 35.0%
GACATTGAAGGAGTTTGAAA+AGG - chr5_2:16758116-16758135 Msa0760350:intron 35.0%
! TCACATGATGATGTTTATGC+AGG - chr5_2:16758443-16758462 Msa0760350:intron 35.0%
! CACATGATGATGTTTATGCA+GGG - chr5_2:16758444-16758463 Msa0760350:intron 35.0%
TTGCATGTTATGTGCTCTTT+CGG + chr5_2:16758538-16758557 None:intergenic 35.0%
! AAAGAGCACATAACATGCAA+CGG - chr5_2:16758538-16758557 Msa0760350:intron 35.0%
GGAGTGAAGAAAATAAGAAG+TGG - chr5_2:16758603-16758622 Msa0760350:intron 35.0%
AATTGAAGATGACAGTGAAG+AGG - chr5_2:16758662-16758681 Msa0760350:intron 35.0%
AATACACGTAAAAGGAAAGC+TGG - chr5_2:16758702-16758721 Msa0760350:intron 35.0%
!!! TCTCCATTTTTAGTTGGTAC+TGG + chr5_2:16758812-16758831 None:intergenic 35.0%
!!! ACTGCATCTCCATTTTTAGT+TGG + chr5_2:16758818-16758837 None:intergenic 35.0%
AACTAAAAATGGAGATGCAG+TGG - chr5_2:16758817-16758836 Msa0760350:intron 35.0%
! TGAAAGACTGTTGTTTGAAC+AGG - chr5_2:16758866-16758885 Msa0760350:intron 35.0%
GATTAATGACTGAACAGGAA+TGG - chr5_2:16758925-16758944 Msa0760350:intron 35.0%
ACTAAATGAGTCAACTGGAT+TGG - chr5_2:16759048-16759067 Msa0760350:CDS 35.0%
ATGAAGAAAGGAGTTAGGAA+AGG - chr5_2:16759197-16759216 Msa0760350:CDS 35.0%
CAAGAGAGTTCATAGCGATA+AGG - chr5_2:16756922-16756941 Msa0760350:three_prime_UTR 40.0%
CACTTGCATTTACACTGTTC+AGG + chr5_2:16757044-16757063 None:intergenic 40.0%
CTGAACAGTGTAAATGCAAG+TGG - chr5_2:16757042-16757061 Msa0760350:CDS 40.0%
ATTGTTCAAGTCCCTAACGT+TGG + chr5_2:16757517-16757536 None:intergenic 40.0%
!! TGATGATGTGATTTGGTTGG+AGG - chr5_2:16757745-16757764 Msa0760350:intron 40.0%
!! GATGATGTGATTTGGTTGGA+GGG - chr5_2:16757746-16757765 Msa0760350:intron 40.0%
CAATGAGGTCCAGTTCATAT+GGG + chr5_2:16757796-16757815 None:intergenic 40.0%
ACAATGAGGTCCAGTTCATA+TGG + chr5_2:16757797-16757816 None:intergenic 40.0%
! GCTTTTGAATCACTCCAGTT+AGG + chr5_2:16757832-16757851 None:intergenic 40.0%
CATAATGGTGCACGTGAAAT+GGG + chr5_2:16757903-16757922 None:intergenic 40.0%
ACATAATGGTGCACGTGAAA+TGG + chr5_2:16757904-16757923 None:intergenic 40.0%
! AAGTTGGTTGAGGCACATAA+TGG + chr5_2:16757918-16757937 None:intergenic 40.0%
! AGATTTCTTGATGGGCAAGT+TGG + chr5_2:16757934-16757953 None:intergenic 40.0%
!! GTATAGCTTTTTAGTCCCCA+AGG - chr5_2:16758070-16758089 Msa0760350:intron 40.0%
AACCAATTGAACCACACCTT+GGG + chr5_2:16758089-16758108 None:intergenic 40.0%
GGAGTTTGAAAAGGAGATCT+AGG - chr5_2:16758125-16758144 Msa0760350:intron 40.0%
! TTTTTGCATATGCATAGGGG+AGG + chr5_2:16758257-16758276 None:intergenic 40.0%
TGTTTGAGCTGAACGAGTTT+CGG + chr5_2:16758577-16758596 None:intergenic 40.0%
CGTTCAGCTCAAACAAAGAA+AGG - chr5_2:16758582-16758601 Msa0760350:intron 40.0%
! ATCTTCTGAGAATTCGTCAG+AGG + chr5_2:16758637-16758656 None:intergenic 40.0%
CGAGAAGCAATACACGTAAA+AGG - chr5_2:16758694-16758713 Msa0760350:intron 40.0%
GAAAGCTGGCAAAATTGCAA+CGG - chr5_2:16758716-16758735 Msa0760350:intron 40.0%
TAAAAATGGAGATGCAGTGG+AGG - chr5_2:16758820-16758839 Msa0760350:intron 40.0%
AAAAATGGAGATGCAGTGGA+GGG - chr5_2:16758821-16758840 Msa0760350:intron 40.0%
! GACTGTTGTTTGAACAGGAA+TGG - chr5_2:16758871-16758890 Msa0760350:intron 40.0%
! TGTTGTTTGAACAGGAATGG+CGG - chr5_2:16758874-16758893 Msa0760350:intron 40.0%
AGTCAATGGAAAAGCTTGAG+AGG - chr5_2:16758898-16758917 Msa0760350:intron 40.0%
GTCAATGGAAAAGCTTGAGA+GGG - chr5_2:16758899-16758918 Msa0760350:intron 40.0%
GGAGAGATTAATGACTGAAC+AGG - chr5_2:16758920-16758939 Msa0760350:intron 40.0%
TAATGACTGAACAGGAATGG+AGG - chr5_2:16758928-16758947 Msa0760350:intron 40.0%
AATGACTGAACAGGAATGGA+GGG - chr5_2:16758929-16758948 Msa0760350:intron 40.0%
GGTGAATGAAGAAAGGAGTT+AGG - chr5_2:16759192-16759211 Msa0760350:CDS 40.0%
CTTTACAACCAACATATCCC+TGG + chr5_2:16759324-16759343 None:intergenic 40.0%
CAGAAACCGAAAATGTACGG+CGG - chr5_2:16756759-16756778 Msa0760350:three_prime_UTR 45.0%
GATGTCGGAATCAGAAGTGA+CGG + chr5_2:16756831-16756850 None:intergenic 45.0%
AGAGTTCATAGCGATAAGGG+CGG - chr5_2:16756926-16756945 Msa0760350:three_prime_UTR 45.0%
! GGGATTTTACAGCTTCGAAG+AGG - chr5_2:16756958-16756977 Msa0760350:exon 45.0%
GAAGAGGAACAAGACGCTTT+GGG - chr5_2:16756974-16756993 Msa0760350:exon 45.0%
AAGTGGTGAGTTCGAAGATG+AGG - chr5_2:16756997-16757016 Msa0760350:CDS 45.0%
AGTGGTGAGTTCGAAGATGA+GGG - chr5_2:16756998-16757017 Msa0760350:CDS 45.0%
! GAGGGTGTGTGTTATGGATT+GGG - chr5_2:16757764-16757783 Msa0760350:intron 45.0%
!! TGTGTGTTATGGATTGGGTC+AGG - chr5_2:16757769-16757788 Msa0760350:intron 45.0%
TGAATCACTCCAGTTAGGGT+TGG + chr5_2:16757827-16757846 None:intergenic 45.0%
GGATTGATTGTGCAGTGATG+TGG + chr5_2:16757858-16757877 None:intergenic 45.0%
ACCAATTGAACCACACCTTG+GGG + chr5_2:16758088-16758107 None:intergenic 45.0%
CAACCAATTGAACCACACCT+TGG + chr5_2:16758090-16758109 None:intergenic 45.0%
TGGTTGAGCTGAGACATTGA+AGG - chr5_2:16758104-16758123 Msa0760350:intron 45.0%
TATGCACTAGTGTGACCGTT+TGG + chr5_2:16758230-16758249 None:intergenic 45.0%
GAGACATCTGATCCAGAACA+TGG - chr5_2:16758471-16758490 Msa0760350:intron 45.0%
CTGAGAATTCGTCAGAGGAT+CGG + chr5_2:16758632-16758651 None:intergenic 45.0%
TTACGTGTATTGCTTCTCGC+AGG + chr5_2:16758693-16758712 None:intergenic 45.0%
TTGCAACGGAGAAGTCTTCA+AGG - chr5_2:16758730-16758749 Msa0760350:intron 45.0%
TGCAACGGAGAAGTCTTCAA+GGG - chr5_2:16758731-16758750 Msa0760350:intron 45.0%
! AGAAGAGCATAGGAGACTGA+GGG - chr5_2:16758956-16758975 Msa0760350:CDS 45.0%
CATCAAGTCCAGGGATATGT+TGG - chr5_2:16759313-16759332 Msa0760350:five_prime_UTR 45.0%
AAACCGAAAATGTACGGCGG+CGG - chr5_2:16756762-16756781 Msa0760350:three_prime_UTR 50.0%
GTGACGGTGGTACTATTCCT+AGG + chr5_2:16756815-16756834 None:intergenic 50.0%
GGAGACATCAACGACGATGT+CGG + chr5_2:16756846-16756865 None:intergenic 50.0%
ATCGTCGTTGATGTCTCCTG+CGG - chr5_2:16756848-16756867 Msa0760350:three_prime_UTR 50.0%
CGAAGAGGAACAAGACGCTT+TGG - chr5_2:16756973-16756992 Msa0760350:exon 50.0%
!! GAACAAGACGCTTTGGGAAG+TGG - chr5_2:16756980-16756999 Msa0760350:CDS 50.0%
AGTTCGAAGATGAGGGAGAG+AGG - chr5_2:16757005-16757024 Msa0760350:CDS 50.0%
GTTCGAAGATGAGGGAGAGA+GGG - chr5_2:16757006-16757025 Msa0760350:CDS 50.0%
! AGATGAGGGAGAGAGGGTAT+AGG - chr5_2:16757012-16757031 Msa0760350:CDS 50.0%
!! CAAGTCCCTAACGTTGGCTT+GGG + chr5_2:16757511-16757530 None:intergenic 50.0%
! TCAAGTCCCTAACGTTGGCT+TGG + chr5_2:16757512-16757531 None:intergenic 50.0%
! TGGTTGGAGGGTGTGTGTTA+TGG - chr5_2:16757758-16757777 Msa0760350:intron 50.0%
! GGAGGGTGTGTGTTATGGAT+TGG - chr5_2:16757763-16757782 Msa0760350:intron 50.0%
GGGTTGGACTTCACACAATG+AGG + chr5_2:16757811-16757830 None:intergenic 50.0%
GTGTGAAGTCCAACCCTAAC+TGG - chr5_2:16757815-16757834 Msa0760350:intron 50.0%
!! CTTGATGGGCAAGTTGGTTG+AGG + chr5_2:16757928-16757947 None:intergenic 50.0%
!! GCTTTTTAGTCCCCAAGGTG+TGG - chr5_2:16758075-16758094 Msa0760350:intron 50.0%
TCCCCAAGGTGTGGTTCAAT+TGG - chr5_2:16758084-16758103 Msa0760350:intron 50.0%
AGCTCCTTCAACCTGCCAAA+CGG - chr5_2:16758212-16758231 Msa0760350:intron 50.0%
! GGAGGGAAAGAGAAGAGCAT+AGG - chr5_2:16758946-16758965 Msa0760350:CDS 50.0%
! GAGAAGAGCATAGGAGACTG+AGG - chr5_2:16758955-16758974 Msa0760350:CDS 50.0%
GAGACTGAGGGAGGAGAATA+GGG - chr5_2:16758968-16758987 Msa0760350:CDS 50.0%
AGGAGAATAGGGCAGAGAGA+AGG - chr5_2:16758979-16758998 Msa0760350:CDS 50.0%
GGAGAATAGGGCAGAGAGAA+GGG - chr5_2:16758980-16758999 Msa0760350:CDS 50.0%
ATCTCTTGGGCATCAAGTCC+AGG - chr5_2:16759303-16759322 Msa0760350:five_prime_UTR 50.0%
TCTCTTGGGCATCAAGTCCA+GGG - chr5_2:16759304-16759323 Msa0760350:five_prime_UTR 50.0%
GTCGGAATCAGAAGTGACGG+TGG + chr5_2:16756828-16756847 None:intergenic 55.0%
! TGAGGGAGAGAGGGTATAGG+AGG - chr5_2:16757015-16757034 Msa0760350:CDS 55.0%
ACGTAGCCCAAGCCAACGTT+AGG - chr5_2:16757502-16757521 Msa0760350:CDS 55.0%
CGTAGCCCAAGCCAACGTTA+GGG - chr5_2:16757503-16757522 Msa0760350:CDS 55.0%
GGGTCAGGACCCATATGAAC+TGG - chr5_2:16757784-16757803 Msa0760350:intron 55.0%
CACCAGTGATCCACCTACTG+CGG - chr5_2:16757877-16757896 Msa0760350:intron 55.0%
! GTGACCGTTTGGCAGGTTGA+AGG + chr5_2:16758219-16758238 None:intergenic 55.0%
CACTAGTGTGACCGTTTGGC+AGG + chr5_2:16758226-16758245 None:intergenic 55.0%
! GGGCATTGCTTGCCATGTTC+TGG + chr5_2:16758486-16758505 None:intergenic 55.0%
AATGGAGATGCAGTGGAGGG+AGG - chr5_2:16758824-16758843 Msa0760350:intron 55.0%
!! AGTGGAGGGAGGTGATGGAT+AGG - chr5_2:16758835-16758854 Msa0760350:intron 55.0%
ACAGGAATGGCGGCAGTCAA+TGG - chr5_2:16758884-16758903 Msa0760350:intron 55.0%
AGAGCATAGGAGACTGAGGG+AGG - chr5_2:16758959-16758978 Msa0760350:CDS 55.0%
GGAGACTGAGGGAGGAGAAT+AGG - chr5_2:16758967-16758986 Msa0760350:CDS 55.0%
! CCACCGCCGCCGTACATTTT+CGG + chr5_2:16756768-16756787 None:intergenic 60.0%
AAAATGTACGGCGGCGGTGG+AGG - chr5_2:16756768-16756787 Msa0760350:three_prime_UTR 60.0%
GTCGTTGATGTCTCCTGCGG+CGG - chr5_2:16756851-16756870 Msa0760350:three_prime_UTR 60.0%
!! GTCTCCTGCTGACTCCACTG+CGG + chr5_2:16756903-16756922 None:intergenic 60.0%
CATAGCGATAAGGGCGGAGC+TGG - chr5_2:16756932-16756951 Msa0760350:three_prime_UTR 60.0%
GATAAGGGCGGAGCTGGAGA+GGG - chr5_2:16756938-16756957 Msa0760350:three_prime_UTR 60.0%
CGCAGTAGGTGGATCACTGG+TGG + chr5_2:16757879-16757898 None:intergenic 60.0%
GTGAAATGGGCCGCAGTAGG+TGG + chr5_2:16757890-16757909 None:intergenic 60.0%
CACGTGAAATGGGCCGCAGT+AGG + chr5_2:16757893-16757912 None:intergenic 60.0%
GATGCAGTGGAGGGAGGTGA+TGG - chr5_2:16758830-16758849 Msa0760350:intron 60.0%
!! GGAGGGAGGTGATGGATAGG+CGG - chr5_2:16758838-16758857 Msa0760350:intron 60.0%
!! GAGGGAGGTGATGGATAGGC+GGG - chr5_2:16758839-16758858 Msa0760350:intron 60.0%
CCGAAAATGTACGGCGGCGG+TGG - chr5_2:16756765-16756784 Msa0760350:three_prime_UTR 65.0%
CGGTGGAGGAGACGATGCTC+TGG - chr5_2:16756782-16756801 Msa0760350:three_prime_UTR 65.0%
GATGCTCTGGCAGCTCGCCT+AGG - chr5_2:16756795-16756814 Msa0760350:three_prime_UTR 65.0%
TGCGGCGGTGAGAGAGGAGA+GGG - chr5_2:16756866-16756885 Msa0760350:three_prime_UTR 65.0%
TGACTCCACTGCGGCTGAGC+TGG + chr5_2:16756894-16756913 None:intergenic 65.0%
TCAGCCGCAGTGGAGTCAGC+AGG - chr5_2:16756896-16756915 Msa0760350:three_prime_UTR 65.0%
CGATAAGGGCGGAGCTGGAG+AGG - chr5_2:16756937-16756956 Msa0760350:three_prime_UTR 65.0%
GGCCGCAGTAGGTGGATCAC+TGG + chr5_2:16757882-16757901 None:intergenic 65.0%
GTCTCCTGCGGCGGTGAGAG+AGG - chr5_2:16756860-16756879 Msa0760350:three_prime_UTR 70.0%
CTCTCCTCTCTCACCGCCGC+AGG + chr5_2:16756867-16756886 None:intergenic 70.0%
CTGCGGCGGTGAGAGAGGAG+AGG - chr5_2:16756865-16756884 Msa0760350:three_prime_UTR 70.0%
GGGTACCAGCTCAGCCGCAG+TGG - chr5_2:16756886-16756905 Msa0760350:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 16756632 16759395 16756632 ID=Msa0760350;Name=Msa0760350
chr5_2 mRNA 16756632 16759395 16756632 ID=Msa0760350-mRNA-1;Parent=Msa0760350;Name=Msa0760350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=139|1|1|1|1|1|2|343|301
chr5_2 exon 16756632 16757562 16756632 ID=Msa0760350-mRNA-1:exon:7396;Parent=Msa0760350-mRNA-1
chr5_2 exon 16758939 16759395 16758939 ID=Msa0760350-mRNA-1:exon:7395;Parent=Msa0760350-mRNA-1
chr5_2 five_prime_UTR 16759257 16759395 16759257 ID=Msa0760350-mRNA-1:five_prime_utr;Parent=Msa0760350-mRNA-1
chr5_2 CDS 16758939 16759256 16758939 ID=Msa0760350-mRNA-1:cds;Parent=Msa0760350-mRNA-1
chr5_2 CDS 16756975 16757562 16756975 ID=Msa0760350-mRNA-1:cds;Parent=Msa0760350-mRNA-1
chr5_2 three_prime_UTR 16756632 16756974 16756632 ID=Msa0760350-mRNA-1:three_prime_utr;Parent=Msa0760350-mRNA-1
Gene Sequence

>Msa0760350

ATGTACGGCGGCGGTGGAGGAGACGATGCTCTGGCAGCTCGCCTAGGAATAGTACCACCGTCACTTCTGATTCCGACATCGTCGTTGATGTCTCCTGCGGCGGTGAGAGAGGAGAGGGTACCAGCTCAGCCGCAGTGGAGTCAGCAGGAGACAAGAGAGTTCATAGCGATAAGGGCGGAGCTGGAGAGGGATTTTACAGCTTCGAAGAGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTATAGGAGGAGTCCTGAACAGTGTAAATGCAAGTGGAAGAATCTTGTTAACCGCTATAAGGGAAAAGAGACATCTGATCCAGAACATGGCAAGCAATGCCCATTTTTTGAAGAATTGCATGCAGTTTTTACCGAAAGAGCACATAACATGCAACGGTTACTTCTTGAATCCGAAACTCGTTCAGCTCAAACAAAGAAAGGAGTGAAGAAAATAAGAAGTGGAGACCGATCCTCTGACGAATTCTCAGAAGATGATGAAATTGAAGATGACAGTGAAGAGGAGAGACCTGCGAGAAGCAATACACGTAAAAGGAAAGCTGGCAAAATTGCAACGGAGAAGTCTTCAAGGGTAAACAATGCAAACAATAGTACTAGTAATATTCAAGAAATGCTCAAGGAATTTTTCCAGTACCAACTAAAAATGGAGATGCAGTGGAGGGAGGTGATGGATAGGCGGGCACATGAAAGACTGTTGTTTGAACAGGAATGGCGGCAGTCAATGGAAAAGCTTGAGAGGGAGAGATTAATGACTGAACAGGAATGGAGGGAAAGAGAAGAGCATAGGAGACTGAGGGAGGAGAATAGGGCAGAGAGAAGGGACGCTTTGTTGACGACCCTTTTAAACAAACTCATTCATGAATCTAACTAA

Protein sequence

>Msa0760350

MYGGGGGDDALAARLGIVPPSLLIPTSSLMSPAAVREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTERAHNMQRLLLESETRSAQTKKGVKKIRSGDRSSDEFSEDDEIEDDSEEERPARSNTRKRKAGKIATEKSSRVNNANNSTSNIQEMLKEFFQYQLKMEMQWREVMDRRAHERLLFEQEWRQSMEKLERERLMTEQEWREREEHRRLREENRAERRDALLTTLLNKLIHESN*