AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0823500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823500 MtrunA17_Chr5g0444111 98.077 208 4 0 1 208 1 208 3.67e-156 430
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0823500 AT1G50670.2 81.250 208 39 0 1 208 1 208 2.68e-130 365
Msa0823500 AT1G50670.3 81.250 208 39 0 1 208 1 208 2.68e-130 365
Msa0823500 AT1G50670.1 81.250 208 39 0 1 208 1 208 2.68e-130 365

Find 76 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGTTACATACTAATATT+TGG 0.227393 5_3:-62180793 Msa0823500:five_prime_UTR
CAGTTACAATAGGCTGAATT+TGG 0.239304 5_3:+62179158 None:intergenic
AGAGGAATTGGGTTGGAAAT+TGG 0.275499 5_3:+62180687 None:intergenic
TCAATATTAGCAGATTATTA+TGG 0.285688 5_3:-62178596 Msa0823500:CDS
TGCTCAATTCAGATATGTTA+TGG 0.290732 5_3:-62180215 Msa0823500:intron
TCTGACCAATGACTCCAATT+TGG 0.301760 5_3:+62177582 None:intergenic
CGATGTGGGGTATGCCAAAT+TGG 0.302440 5_3:-62177596 Msa0823500:CDS
CAAATTCAGCCTATTGTAAC+TGG 0.305952 5_3:-62179157 Msa0823500:CDS
AAATATTCTGAAGCATTTCT+TGG 0.308148 5_3:-62179185 Msa0823500:CDS
CTCAACAGGTCCAATGCTTC+TGG 0.312074 5_3:+62178122 None:intergenic
AGATCTATATGAAGAGGAAT+TGG 0.333067 5_3:+62180675 None:intergenic
AACTAACCTCCCCACTTCTC+TGG 0.356124 5_3:+62179125 None:intergenic
ACAAATCGCATCGTGTTGTC+TGG 0.371459 5_3:+62178549 None:intergenic
TCAACTCAGCAGCTTTAGTT+TGG 0.377147 5_3:+62180185 None:intergenic
TCCTCTGGAGCTCCTTCAAC+AGG 0.382035 5_3:+62178177 None:intergenic
GATTATCATCATATTCTTGT+TGG 0.399507 5_3:-62177037 Msa0823500:three_prime_UTR
GCGGAGCACGCTCAAGCAAC+TGG 0.402662 5_3:-62177294 Msa0823500:CDS
TTGGTTTATATTCATACTGT+TGG 0.409294 5_3:-62177018 Msa0823500:three_prime_UTR
AAGAAGCAAAGAGATATTCT+TGG 0.418960 5_3:+62180726 None:intergenic
GTAATCATAGTTCCTTTCCT+TGG 0.433524 5_3:-62177105 Msa0823500:three_prime_UTR
TTACCCTTTGAGTTTGAACT+TGG 0.434618 5_3:-62180614 Msa0823500:five_prime_UTR
AATGCTTCAGAATATTTCTC+AGG 0.446244 5_3:+62179191 None:intergenic
TTTAAAGCAATCCCCTCAAC+AGG 0.447173 5_3:+62178108 None:intergenic
GTATGCCAAATTGGAGTCAT+TGG 0.454845 5_3:-62177587 Msa0823500:CDS
AATATTCTGAAGCATTTCTT+GGG 0.459533 5_3:-62179184 Msa0823500:CDS
GCTATATACAATCTAAATCA+TGG 0.459854 5_3:-62180382 Msa0823500:exon
ATTAGAATTTCCTACACTAC+AGG 0.466698 5_3:-62177059 Msa0823500:three_prime_UTR
ACTGAATAATCTGCATGCCT+TGG 0.473206 5_3:-62177156 Msa0823500:three_prime_UTR
GATCTATATGAAGAGGAATT+GGG 0.476219 5_3:+62180676 None:intergenic
GGTCAGATGTCTCCTGTTGA+AGG 0.476296 5_3:-62178189 Msa0823500:intron
TTTGTATGGCAAATATGGTC+TGG 0.488633 5_3:+62178148 None:intergenic
ATGGTCTGGTCAAAATCCTC+TGG 0.495685 5_3:+62178162 None:intergenic
TCGTGTTGTCTGGATATCAT+AGG 0.498959 5_3:+62178559 None:intergenic
GTCAAGAATCCAGTTACAAT+AGG 0.506795 5_3:+62179148 None:intergenic
GGAAGGTAATTATTCTGAAA+GGG 0.508302 5_3:-62178423 Msa0823500:CDS
AGGAAGGTAATTATTCTGAA+AGG 0.513503 5_3:-62178424 Msa0823500:CDS
CAGAAGCATTGGACCTGTTG+AGG 0.521801 5_3:-62178121 Msa0823500:CDS
CCCACATCGTAGAGTGAAGT+TGG 0.523150 5_3:+62177610 None:intergenic
ACTAACCTCCCCACTTCTCT+GGG 0.530654 5_3:+62179126 None:intergenic
AGAAGCATTGGACCTGTTGA+GGG 0.539369 5_3:-62178120 Msa0823500:CDS
CGATGCAGATCTATATGAAG+AGG 0.539982 5_3:+62180669 None:intergenic
TAAAGCTGCTGAGTTGAGAC+AGG 0.540696 5_3:-62180179 Msa0823500:intron
GAACCCAAGTTCAAACTCAA+AGG 0.541413 5_3:+62180610 None:intergenic
ACGATGCGATTTGTACGGTC+AGG 0.543026 5_3:-62178540 Msa0823500:intron
CCAACTTCACTCTACGATGT+GGG 0.545015 5_3:-62177610 Msa0823500:CDS
GATTCTTGACCCAGAGAAGT+GGG 0.546552 5_3:-62179135 Msa0823500:CDS
TACCCTTTGAGTTTGAACTT+GGG 0.547523 5_3:-62180613 Msa0823500:five_prime_UTR
AACCCAAGTTCAAACTCAAA+GGG 0.551445 5_3:+62180611 None:intergenic
TCCTGTTGAAGGAGCTCCAG+AGG 0.552078 5_3:-62178178 Msa0823500:CDS
ATACAAAAGACCAGAAGCAT+TGG 0.561507 5_3:-62178132 Msa0823500:CDS
AATTGGAGTCATTGGTCAGA+AGG 0.571915 5_3:-62177579 Msa0823500:intron
GAATTGAGGACTACCTATGT+TGG 0.572934 5_3:+62178073 None:intergenic
TGATGATAATCCTGTAGTGT+AGG 0.573484 5_3:+62177049 None:intergenic
TTGATTAAGATTTGAGACCA+AGG 0.573534 5_3:+62177088 None:intergenic
TAGAGTGAAGTTGGCAGTGT+CGG 0.574302 5_3:+62177619 None:intergenic
CAAAGAGATATTCTTGGCGT+GGG 0.576173 5_3:+62180732 None:intergenic
GGATTCTTGACCCAGAGAAG+TGG 0.579954 5_3:-62179136 Msa0823500:CDS
GCAAAGAGATATTCTTGGCG+TGG 0.583199 5_3:+62180731 None:intergenic
TGAATATATTCAGGAGGCAG+CGG 0.588506 5_3:-62177313 Msa0823500:intron
ACAACACGATGCGATTTGTA+CGG 0.591398 5_3:-62178545 Msa0823500:CDS
TATATGAAGAGGAATTGGGT+TGG 0.592388 5_3:+62180680 None:intergenic
AAAAGACAACTATTATCAGA+AGG 0.594601 5_3:+62180333 None:intergenic
GGAAGGTGTTGTTGTGAGAA+GGG 0.595151 5_3:-62180361 Msa0823500:CDS
AATTTGCCACAACAATTCCA+AGG 0.600846 5_3:+62177139 None:intergenic
TGGAAGGTGTTGTTGTGAGA+AGG 0.603137 5_3:-62180362 Msa0823500:CDS
TATACAATCTAAATCATGGA+AGG 0.603573 5_3:-62180378 Msa0823500:exon
TAAGATTTGAGACCAAGGAA+AGG 0.611951 5_3:+62177093 None:intergenic
GCCAACTTCACTCTACGATG+TGG 0.618112 5_3:-62177611 Msa0823500:CDS
TGCATGCCTTGGAATTGTTG+TGG 0.630053 5_3:-62177145 Msa0823500:three_prime_UTR
GAAGCATTGGACCTGTTGAG+GGG 0.634365 5_3:-62178119 Msa0823500:CDS
AGGGTGATGCTGATTTATGA+TGG 0.634654 5_3:-62178404 Msa0823500:CDS
CTTGACCCAGAGAAGTGGGG+AGG 0.656264 5_3:-62179131 Msa0823500:intron
CAACTTCACTCTACGATGTG+GGG 0.662033 5_3:-62177609 Msa0823500:CDS
ATACAGCTAAAGCATCGTAG+TGG 0.669725 5_3:+62178378 None:intergenic
ATTCTTGACCCAGAGAAGTG+GGG 0.684824 5_3:-62179134 Msa0823500:CDS
AATATAAATGATACACTGTG+AGG 0.717862 5_3:-62177254 Msa0823500:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTTATATTTAAAAC+CGG - chr5_3:62178465-62178484 Msa0823500:intron 10.0%
!!! AAAATATGCAAATATTTTCT+TGG + chr5_3:62177247-62177266 None:intergenic 15.0%
!!! TATTTTTTGTATTGAATTCT+AGG - chr5_3:62177320-62177339 Msa0823500:intron 15.0%
!! AAACTTCAAATTATCATATA+TGG - chr5_3:62178282-62178301 Msa0823500:intron 15.0%
!! AGTAAAAATGTATATGTATT+TGG + chr5_3:62178453-62178472 None:intergenic 15.0%
!!! TAAAAATATTTCACTTTTCA+AGG + chr5_3:62179596-62179615 None:intergenic 15.0%
!! ATTCTTATTGAATCTTTATA+TGG - chr5_3:62179825-62179844 Msa0823500:intron 15.0%
!!! AATGTCATTTTTAAGTAAAT+AGG + chr5_3:62180407-62180426 None:intergenic 15.0%
!! GTTAGTTACATACTAATATT+TGG - chr5_3:62177086-62177105 Msa0823500:three_prime_UTR 20.0%
!!! TGACCAGAATTTTAAAAATA+GGG + chr5_3:62177892-62177911 None:intergenic 20.0%
!!! ATGACCAGAATTTTAAAAAT+AGG + chr5_3:62177893-62177912 None:intergenic 20.0%
!! AAATGTGTATTCGTTATTTA+AGG + chr5_3:62178231-62178250 None:intergenic 20.0%
!!! TGTTATATTTTACATGCTAA+AGG - chr5_3:62178639-62178658 Msa0823500:intron 20.0%
!! TCTAAATCATCCTAAAATTA+TGG + chr5_3:62178886-62178905 None:intergenic 20.0%
!! TAAATATATACCAAGTACAT+AGG - chr5_3:62178953-62178972 Msa0823500:intron 20.0%
!! AACATAAAAATGAGTTTCAA+AGG - chr5_3:62179144-62179163 Msa0823500:CDS 20.0%
!! ACATAAAAATGAGTTTCAAA+GGG - chr5_3:62179145-62179164 Msa0823500:CDS 20.0%
!!! CTATTAGTTTTTCATTAGTT+TGG - chr5_3:62179208-62179227 Msa0823500:CDS 20.0%
!! TCAATATTAGCAGATTATTA+TGG - chr5_3:62179283-62179302 Msa0823500:intron 20.0%
!! AATAGATGATTAGTAATTTC+TGG + chr5_3:62179540-62179559 None:intergenic 20.0%
!!! ATTTTATTAAAGACCAACAT+AGG - chr5_3:62179793-62179812 Msa0823500:intron 20.0%
!! TAAAGATTCAATAAGAATTG+AGG + chr5_3:62179823-62179842 None:intergenic 20.0%
!! TTGTGTACTTCTATATATAA+GGG - chr5_3:62179871-62179890 Msa0823500:intron 20.0%
!!! TGAACTATAGATTTAGATTT+TGG - chr5_3:62179990-62180009 Msa0823500:intron 20.0%
!! TATAAAAATTACAGGTAAGT+AGG + chr5_3:62180520-62180539 None:intergenic 20.0%
!! GTCAGAATTATAAAAATTAC+AGG + chr5_3:62180528-62180547 None:intergenic 20.0%
!!! ATTTTTCTGTGAATATATTC+AGG - chr5_3:62180557-62180576 Msa0823500:intron 20.0%
! TATAAGGTTTGAATTCTTAC+AGG + chr5_3:62177294-62177313 None:intergenic 25.0%
! ATCAATCAAAAACTCAATCA+TGG + chr5_3:62177464-62177483 None:intergenic 25.0%
!!! TGAGTTTTTGATTGATATTC+AGG - chr5_3:62177468-62177487 Msa0823500:intron 25.0%
! GCTATATACAATCTAAATCA+TGG - chr5_3:62177497-62177516 Msa0823500:intron 25.0%
! TATACAATCTAAATCATGGA+AGG - chr5_3:62177501-62177520 Msa0823500:intron 25.0%
! AAAAGACAACTATTATCAGA+AGG + chr5_3:62177549-62177568 None:intergenic 25.0%
! TTAGTAGAAAACTAGATACA+AGG - chr5_3:62177821-62177840 Msa0823500:intron 25.0%
!!! TCTCCCTATTTTTAAAATTC+TGG - chr5_3:62177886-62177905 Msa0823500:intron 25.0%
! AATACGTTGATATGTATGTT+TGG - chr5_3:62178046-62178065 Msa0823500:intron 25.0%
!!! GGACTCTAAAATCATTAATT+TGG - chr5_3:62178071-62178090 Msa0823500:intron 25.0%
!!! CACATTTGATTGTTTTTCTT+TGG - chr5_3:62178244-62178263 Msa0823500:intron 25.0%
!! TACTTATATTTAAAACCGGA+AGG - chr5_3:62178469-62178488 Msa0823500:intron 25.0%
!! ACTTATATTTAAAACCGGAA+GGG - chr5_3:62178470-62178489 Msa0823500:intron 25.0%
! ACTGAAATTAGGAAAAACAA+GGG + chr5_3:62178566-62178585 None:intergenic 25.0%
! AACTGAAATTAGGAAAAACA+AGG + chr5_3:62178567-62178586 None:intergenic 25.0%
!!! AAATATTCTGAAGCATTTCT+TGG - chr5_3:62178694-62178713 Msa0823500:intron 25.0%
!!! AATATTCTGAAGCATTTCTT+GGG - chr5_3:62178695-62178714 Msa0823500:intron 25.0%
!! AATTTAAAACAGCCATGATT+CGG + chr5_3:62178792-62178811 None:intergenic 25.0%
! AAAGTCATATTTGAACATCT+AGG - chr5_3:62179029-62179048 Msa0823500:intron 25.0%
!!! TTAAGTACCAAAAGTTTTGT+CGG - chr5_3:62179101-62179120 Msa0823500:intron 25.0%
! ATCATTAGGCAACATAAAAA+TGG + chr5_3:62179657-62179676 None:intergenic 25.0%
! GTTGTGTACTTCTATATATA+AGG - chr5_3:62179870-62179889 Msa0823500:intron 25.0%
!!! ATAAGGGTTCTCTTATTTTT+CGG - chr5_3:62179887-62179906 Msa0823500:intron 25.0%
! CTCTATAACAGAAAATTCTT+CGG - chr5_3:62180447-62180466 Msa0823500:intron 25.0%
! TCCTATTTCAGTAACTAAAT+TGG - chr5_3:62180476-62180495 Msa0823500:intron 25.0%
! ACCAATTTAGTTACTGAAAT+AGG + chr5_3:62180480-62180499 None:intergenic 25.0%
! AATATAAATGATACACTGTG+AGG - chr5_3:62180625-62180644 Msa0823500:five_prime_UTR 25.0%
! GATTATCATCATATTCTTGT+TGG - chr5_3:62180842-62180861 Msa0823500:five_prime_UTR 25.0%
! TTGGTTTATATTCATACTGT+TGG - chr5_3:62180861-62180880 Msa0823500:five_prime_UTR 25.0%
AAGAAGCAAAGAGATATTCT+TGG + chr5_3:62177156-62177175 None:intergenic 30.0%
GATCTATATGAAGAGGAATT+GGG + chr5_3:62177206-62177225 None:intergenic 30.0%
AGATCTATATGAAGAGGAAT+TGG + chr5_3:62177207-62177226 None:intergenic 30.0%
TTCTGTTGTTAATTACCAAG+TGG - chr5_3:62177353-62177372 Msa0823500:intron 30.0%
TCTGTTGTTAATTACCAAGT+GGG - chr5_3:62177354-62177373 Msa0823500:intron 30.0%
GTTGCTTCATATCGAATTAT+TGG - chr5_3:62177377-62177396 Msa0823500:intron 30.0%
CATGGTTCAAAATTCAATTG+AGG + chr5_3:62177446-62177465 None:intergenic 30.0%
! AGTTGTCTTTTTAATGCAGT+TGG - chr5_3:62177558-62177577 Msa0823500:intron 30.0%
! GTTGTCTTTTTAATGCAGTT+GGG - chr5_3:62177559-62177578 Msa0823500:intron 30.0%
TGAGCAAAGAATATTACAAG+TGG + chr5_3:62177631-62177650 None:intergenic 30.0%
TGCTCAATTCAGATATGTTA+TGG - chr5_3:62177664-62177683 Msa0823500:intron 30.0%
CAATGCATGTTATGTCAATT+TGG - chr5_3:62177789-62177808 Msa0823500:intron 30.0%
AACTTAACAAGCATAAACGA+AGG + chr5_3:62177861-62177880 None:intergenic 30.0%
TTCATATGTTGTATCCAACT+TGG - chr5_3:62177945-62177964 Msa0823500:intron 30.0%
GAACTGAAAATAATCAGAGA+AGG + chr5_3:62178328-62178347 None:intergenic 30.0%
GGTATTACACAGTAATACAT+AGG - chr5_3:62178352-62178371 Msa0823500:intron 30.0%
! CTTATATTTAAAACCGGAAG+GGG - chr5_3:62178471-62178490 Msa0823500:intron 30.0%
TTCCTAATTTCAGTTCTCTT+TGG - chr5_3:62178572-62178591 Msa0823500:CDS 30.0%
AATGCTTCAGAATATTTCTC+AGG + chr5_3:62178691-62178710 None:intergenic 30.0%
TTATCAAAAGCCAAAGTGTA+AGG + chr5_3:62178921-62178940 None:intergenic 30.0%
AACTCTTCTGTTTGCAAATT+TGG - chr5_3:62179175-62179194 Msa0823500:CDS 30.0%
GTAATCAGCAAAAACAAGAA+CGG + chr5_3:62179428-62179447 None:intergenic 30.0%
!! TTTTGCTGATTACTTTTGAC+AGG - chr5_3:62179435-62179454 Msa0823500:intron 30.0%
AGGAAGGTAATTATTCTGAA+AGG - chr5_3:62179455-62179474 Msa0823500:intron 30.0%
! GGAAGGTAATTATTCTGAAA+GGG - chr5_3:62179456-62179475 Msa0823500:intron 30.0%
!! ATTGATTTTCTCTCACACTT+CGG - chr5_3:62179557-62179576 Msa0823500:intron 30.0%
!! AATATTTCACTTTTCAAGGC+AGG + chr5_3:62179592-62179611 None:intergenic 30.0%
GCTTGACATCTACAAAATTA+AGG - chr5_3:62179617-62179636 Msa0823500:intron 30.0%
CTAATGATTACTCCTTGTAT+GGG - chr5_3:62179669-62179688 Msa0823500:intron 30.0%
!!! TAAGGGTTCTCTTATTTTTC+GGG - chr5_3:62179888-62179907 Msa0823500:intron 30.0%
! AAACACTTTTACTAGCACAA+TGG + chr5_3:62180091-62180110 None:intergenic 30.0%
!! ATTGTGCTAGTAAAAGTGTT+TGG - chr5_3:62180090-62180109 Msa0823500:intron 30.0%
! ATTTTCTACTCAACCTAGTT+TGG - chr5_3:62180141-62180160 Msa0823500:intron 30.0%
ATCACATAAAGCAAAGAATC+AGG + chr5_3:62180339-62180358 None:intergenic 30.0%
TTTGCTTTATGTGATATGCA+TGG - chr5_3:62180344-62180363 Msa0823500:CDS 30.0%
TTTCTGTGAATATATTCAGG+AGG - chr5_3:62180560-62180579 Msa0823500:intron 30.0%
! TTGATTAAGATTTGAGACCA+AGG + chr5_3:62180794-62180813 None:intergenic 30.0%
ATTAGAATTTCCTACACTAC+AGG - chr5_3:62180820-62180839 Msa0823500:five_prime_UTR 30.0%
TATATGAAGAGGAATTGGGT+TGG + chr5_3:62177202-62177221 None:intergenic 35.0%
! TTACCCTTTGAGTTTGAACT+TGG - chr5_3:62177265-62177284 Msa0823500:exon 35.0%
! TACCCTTTGAGTTTGAACTT+GGG - chr5_3:62177266-62177285 Msa0823500:CDS 35.0%
AACCCAAGTTCAAACTCAAA+GGG + chr5_3:62177271-62177290 None:intergenic 35.0%
CTGTTGTTAATTACCAAGTG+GGG - chr5_3:62177355-62177374 Msa0823500:intron 35.0%
! CAGGTGATTTTTCTTTGCTA+TGG - chr5_3:62177719-62177738 Msa0823500:intron 35.0%
CTATGGATATGCAAAGTGAA+TGG - chr5_3:62177736-62177755 Msa0823500:intron 35.0%
CCAAGTACATTTAACCAAGT+TGG + chr5_3:62177962-62177981 None:intergenic 35.0%
CCAACTTGGTTAAATGTACT+TGG - chr5_3:62177959-62177978 Msa0823500:intron 35.0%
! GTTTTTCTTTGGCAAAAGCT+TGG - chr5_3:62178255-62178274 Msa0823500:intron 35.0%
! CTGATTATTTTCAGTTCCTG+AGG - chr5_3:62178331-62178350 Msa0823500:intron 35.0%
GTATTACTGTGTAATACCTC+AGG + chr5_3:62178350-62178369 None:intergenic 35.0%
ATTTGGTACTAGAACACCAT+GGG + chr5_3:62178436-62178455 None:intergenic 35.0%
TATTTGGTACTAGAACACCA+TGG + chr5_3:62178437-62178456 None:intergenic 35.0%
! TTTAAGACTTACCAGCGAAT+CGG - chr5_3:62178531-62178550 Msa0823500:intron 35.0%
CACCAAAGAGAACTGAAATT+AGG + chr5_3:62178577-62178596 None:intergenic 35.0%
CAGTTACAATAGGCTGAATT+TGG + chr5_3:62178724-62178743 None:intergenic 35.0%
CAAATTCAGCCTATTGTAAC+TGG - chr5_3:62178722-62178741 Msa0823500:intron 35.0%
GTCAAGAATCCAGTTACAAT+AGG + chr5_3:62178734-62178753 None:intergenic 35.0%
!! CAAGTTAGAACTGCTACTTT+CGG - chr5_3:62178853-62178872 Msa0823500:intron 35.0%
! CGGTGTTCTACCATAATTTT+AGG - chr5_3:62178873-62178892 Msa0823500:intron 35.0%
CTATGAGAATCCTTACACTT+TGG - chr5_3:62178908-62178927 Msa0823500:intron 35.0%
CTAATGTACTCCTATGTACT+TGG + chr5_3:62178966-62178985 None:intergenic 35.0%
GTCATATTTGAACATCTAGG+AGG - chr5_3:62179032-62179051 Msa0823500:intron 35.0%
! TTCAGAACCGACAAAACTTT+TGG + chr5_3:62179111-62179130 None:intergenic 35.0%
!!! TTTTGTCGGTTCTGAATTTG+TGG - chr5_3:62179115-62179134 Msa0823500:intron 35.0%
! TTGATTTTCTCTCACACTTC+GGG - chr5_3:62179558-62179577 Msa0823500:intron 35.0%
CCATACAAGGAGTAATCATT+AGG + chr5_3:62179671-62179690 None:intergenic 35.0%
CCTAATGATTACTCCTTGTA+TGG - chr5_3:62179668-62179687 Msa0823500:intron 35.0%
TTTGTATGGCAAATATGGTC+TGG + chr5_3:62179734-62179753 None:intergenic 35.0%
! GGTCTTTTGTATGGCAAATA+TGG + chr5_3:62179739-62179758 None:intergenic 35.0%
!! AATGCTTCTGGTCTTTTGTA+TGG + chr5_3:62179748-62179767 None:intergenic 35.0%
! ATACAAAAGACCAGAAGCAT+TGG - chr5_3:62179747-62179766 Msa0823500:intron 35.0%
!!! TTTTCGGGTGTGTGTATTTA+AGG - chr5_3:62179903-62179922 Msa0823500:intron 35.0%
CTCAAGATGATAACCAAACT+AGG + chr5_3:62180157-62180176 None:intergenic 35.0%
TACTGGAAGCAGAATTAATC+CGG + chr5_3:62180188-62180207 None:intergenic 35.0%
AAGCAAAGAATCAGGTACTT+AGG + chr5_3:62180331-62180350 None:intergenic 35.0%
TAGTTACTGAAATAGGAACG+TGG + chr5_3:62180473-62180492 None:intergenic 35.0%
AATTTGCCACAACAATTCCA+AGG + chr5_3:62180743-62180762 None:intergenic 35.0%
GTAATCATAGTTCCTTTCCT+TGG - chr5_3:62180774-62180793 Msa0823500:five_prime_UTR 35.0%
! TAAGATTTGAGACCAAGGAA+AGG + chr5_3:62180789-62180808 None:intergenic 35.0%
TGATGATAATCCTGTAGTGT+AGG + chr5_3:62180833-62180852 None:intergenic 35.0%
CAAAGAGATATTCTTGGCGT+GGG + chr5_3:62177150-62177169 None:intergenic 40.0%
!! AGAGGAATTGGGTTGGAAAT+TGG + chr5_3:62177195-62177214 None:intergenic 40.0%
CGATGCAGATCTATATGAAG+AGG + chr5_3:62177213-62177232 None:intergenic 40.0%
GAACCCAAGTTCAAACTCAA+AGG + chr5_3:62177272-62177291 None:intergenic 40.0%
!! TGGGGGTGCTATAAAGAAAA+AGG + chr5_3:62177591-62177610 None:intergenic 40.0%
AATCATTTGTACCAAGCTGG+GGG + chr5_3:62177608-62177627 None:intergenic 40.0%
GAATCATTTGTACCAAGCTG+GGG + chr5_3:62177609-62177628 None:intergenic 40.0%
GGAATCATTTGTACCAAGCT+GGG + chr5_3:62177610-62177629 None:intergenic 40.0%
TGGAATCATTTGTACCAAGC+TGG + chr5_3:62177611-62177630 None:intergenic 40.0%
! TCAACTCAGCAGCTTTAGTT+TGG + chr5_3:62177697-62177716 None:intergenic 40.0%
CGTTGATATGTATGTTTGGC+TGG - chr5_3:62178050-62178069 Msa0823500:intron 40.0%
TTTGGTACTAGAACACCATG+GGG + chr5_3:62178435-62178454 None:intergenic 40.0%
CCAAAAAGAAATACCCCTTC+CGG + chr5_3:62178487-62178506 None:intergenic 40.0%
GACTTATGTCTTCCGAATCA+TGG - chr5_3:62178777-62178796 Msa0823500:intron 40.0%
GAAGCTATATTCCGTTGTGA+AGG - chr5_3:62179247-62179266 Msa0823500:intron 40.0%
TCGTGTTGTCTGGATATCAT+AGG + chr5_3:62179323-62179342 None:intergenic 40.0%
ACAACACGATGCGATTTGTA+CGG - chr5_3:62179334-62179353 Msa0823500:intron 40.0%
ACGGAAAGGTTCAGTTACTA+GGG + chr5_3:62179409-62179428 None:intergenic 40.0%
AACGGAAAGGTTCAGTTACT+AGG + chr5_3:62179410-62179429 None:intergenic 40.0%
CAGCAAAAACAAGAACGGAA+AGG + chr5_3:62179423-62179442 None:intergenic 40.0%
!! GCTGATTACTTTTGACAGGA+AGG - chr5_3:62179439-62179458 Msa0823500:intron 40.0%
!! AGGGTGATGCTGATTTATGA+TGG - chr5_3:62179475-62179494 Msa0823500:intron 40.0%
!! ATACAGCTAAAGCATCGTAG+TGG + chr5_3:62179504-62179523 None:intergenic 40.0%
! TTTAAAGCAATCCCCTCAAC+AGG + chr5_3:62179774-62179793 None:intergenic 40.0%
GAATTGAGGACTACCTATGT+TGG + chr5_3:62179809-62179828 None:intergenic 40.0%
ATGTATGTTGTCAGCTGTGA+AGG - chr5_3:62180054-62180073 Msa0823500:intron 40.0%
AAGTGTTTGGTTGTCTTGCA+TGG - chr5_3:62180103-62180122 Msa0823500:intron 40.0%
! ATCATCTTGAGTTGCATCTC+CGG - chr5_3:62180166-62180185 Msa0823500:intron 40.0%
! CCAAAATATTAGCACTGGAG+AGG + chr5_3:62180212-62180231 None:intergenic 40.0%
! CCTCTCCAGTGCTAATATTT+TGG - chr5_3:62180209-62180228 Msa0823500:intron 40.0%
AGGGTCCAAAATATTAGCAC+TGG + chr5_3:62180217-62180236 None:intergenic 40.0%
!! TATTTTGGACCCTCATTCTC+AGG - chr5_3:62180224-62180243 Msa0823500:intron 40.0%
GTATGCCAAATTGGAGTCAT+TGG - chr5_3:62180292-62180311 Msa0823500:intron 40.0%
TCTGACCAATGACTCCAATT+TGG + chr5_3:62180300-62180319 None:intergenic 40.0%
AATTGGAGTCATTGGTCAGA+AGG - chr5_3:62180300-62180319 Msa0823500:intron 40.0%
TGAATATATTCAGGAGGCAG+CGG - chr5_3:62180566-62180585 Msa0823500:intron 40.0%
ACTGAATAATCTGCATGCCT+TGG - chr5_3:62180723-62180742 Msa0823500:five_prime_UTR 40.0%
GCAAAGAGATATTCTTGGCG+TGG + chr5_3:62177151-62177170 None:intergenic 45.0%
!! TGGAAGGTGTTGTTGTGAGA+AGG - chr5_3:62177517-62177536 Msa0823500:intron 45.0%
!! GGAAGGTGTTGTTGTGAGAA+GGG - chr5_3:62177518-62177537 Msa0823500:intron 45.0%
! TAAAGCTGCTGAGTTGAGAC+AGG - chr5_3:62177700-62177719 Msa0823500:intron 45.0%
!! GGGGTTGATGGATGATAGTT+AGG + chr5_3:62178415-62178434 None:intergenic 45.0%
TTGGTACTAGAACACCATGG+GGG + chr5_3:62178434-62178453 None:intergenic 45.0%
!!! CCGGAAGGGGTATTTCTTTT+TGG - chr5_3:62178484-62178503 Msa0823500:intron 45.0%
! GGATTAAAGTTCCGATTCGC+TGG + chr5_3:62178545-62178564 None:intergenic 45.0%
GATTCTTGACCCAGAGAAGT+GGG - chr5_3:62178744-62178763 Msa0823500:intron 45.0%
ATTCTTGACCCAGAGAAGTG+GGG - chr5_3:62178745-62178764 Msa0823500:intron 45.0%
TCTGCAACAGTCAGTTGTTG+TGG - chr5_3:62179069-62179088 Msa0823500:intron 45.0%
GTTCAATCGCACCTTCACAA+CGG + chr5_3:62179261-62179280 None:intergenic 45.0%
ACAAATCGCATCGTGTTGTC+TGG + chr5_3:62179333-62179352 None:intergenic 45.0%
ATGGTCTGGTCAAAATCCTC+TGG + chr5_3:62179720-62179739 None:intergenic 45.0%
!! AGAAGCATTGGACCTGTTGA+GGG - chr5_3:62179759-62179778 Msa0823500:intron 45.0%
! ATTAGCACTGGAGAGGATAC+TGG + chr5_3:62180205-62180224 None:intergenic 45.0%
TCTCCGTTTCCTGAGAATGA+GGG + chr5_3:62180236-62180255 None:intergenic 45.0%
ATCTCCGTTTCCTGAGAATG+AGG + chr5_3:62180237-62180256 None:intergenic 45.0%
TAGAGTGAAGTTGGCAGTGT+CGG + chr5_3:62180263-62180282 None:intergenic 45.0%
CCAACTTCACTCTACGATGT+GGG - chr5_3:62180269-62180288 Msa0823500:intron 45.0%
CAACTTCACTCTACGATGTG+GGG - chr5_3:62180270-62180289 Msa0823500:intron 45.0%
AGTCCTGAAATTGTGCGTGT+AGG - chr5_3:62180381-62180400 Msa0823500:exon 45.0%
TGCATGCCTTGGAATTGTTG+TGG - chr5_3:62180734-62180753 Msa0823500:five_prime_UTR 45.0%
!! ACAAAAAATAAATAAATATA+AGG + chr5_3:62177310-62177329 None:intergenic 5.0%
!! TAAATTATAAAATTGTTTAT+AGG - chr5_3:62178806-62178825 Msa0823500:intron 5.0%
CGATATGAAGCAACCCCACT+TGG + chr5_3:62177371-62177390 None:intergenic 50.0%
TCTTTATAGCACCCCCAGCT+TGG - chr5_3:62177594-62177613 Msa0823500:CDS 50.0%
CTATCATCCATCAACCCCCA+TGG - chr5_3:62178417-62178436 Msa0823500:CDS 50.0%
TAGAACACCATGGGGGTTGA+TGG + chr5_3:62178427-62178446 None:intergenic 50.0%
GGATTCTTGACCCAGAGAAG+TGG - chr5_3:62178743-62178762 Msa0823500:intron 50.0%
ACTAACCTCCCCACTTCTCT+GGG + chr5_3:62178756-62178775 None:intergenic 50.0%
AACTAACCTCCCCACTTCTC+TGG + chr5_3:62178757-62178776 None:intergenic 50.0%
ACGATGCGATTTGTACGGTC+AGG - chr5_3:62179339-62179358 Msa0823500:intron 50.0%
GGAGACATCTGACCCATACA+AGG + chr5_3:62179684-62179703 None:intergenic 50.0%
GGTCAGATGTCTCCTGTTGA+AGG - chr5_3:62179690-62179709 Msa0823500:intron 50.0%
CTCAACAGGTCCAATGCTTC+TGG + chr5_3:62179760-62179779 None:intergenic 50.0%
!! CAGAAGCATTGGACCTGTTG+AGG - chr5_3:62179758-62179777 Msa0823500:intron 50.0%
!! GAAGCATTGGACCTGTTGAG+GGG - chr5_3:62179760-62179779 Msa0823500:intron 50.0%
GGACCCTCATTCTCAGGAAA+CGG - chr5_3:62180230-62180249 Msa0823500:intron 50.0%
GCCAACTTCACTCTACGATG+TGG - chr5_3:62180268-62180287 Msa0823500:intron 50.0%
CCCACATCGTAGAGTGAAGT+TGG + chr5_3:62180272-62180291 None:intergenic 50.0%
CGATGTGGGGTATGCCAAAT+TGG - chr5_3:62180283-62180302 Msa0823500:intron 50.0%
AGGCCTACACGCACAATTTC+AGG + chr5_3:62180387-62180406 None:intergenic 50.0%
TCCTGTTGAAGGAGCTCCAG+AGG - chr5_3:62179701-62179720 Msa0823500:intron 55.0%
!! TCCTCTGGAGCTCCTTCAAC+AGG + chr5_3:62179705-62179724 None:intergenic 55.0%
CTTGACCCAGAGAAGTGGGG+AGG - chr5_3:62178748-62178767 Msa0823500:intron 60.0%
GCGGAGCACGCTCAAGCAAC+TGG - chr5_3:62180585-62180604 Msa0823500:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 62177009 62180892 62177009 ID=Msa0823500;Name=Msa0823500
chr5_3 mRNA 62177009 62180892 62177009 ID=Msa0823500-mRNA-1;Parent=Msa0823500;Name=Msa0823500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=311|1|1|1|0.87|0.77|9|257|208
chr5_3 exon 62177009 62177322 62177009 ID=Msa0823500-mRNA-1:exon:19333;Parent=Msa0823500-mRNA-1
chr5_3 exon 62177580 62177655 62177580 ID=Msa0823500-mRNA-1:exon:19332;Parent=Msa0823500-mRNA-1
chr5_3 exon 62178087 62178205 62178087 ID=Msa0823500-mRNA-1:exon:19331;Parent=Msa0823500-mRNA-1
chr5_3 exon 62178382 62178444 62178382 ID=Msa0823500-mRNA-1:exon:19330;Parent=Msa0823500-mRNA-1
chr5_3 exon 62178541 62178632 62178541 ID=Msa0823500-mRNA-1:exon:19329;Parent=Msa0823500-mRNA-1
chr5_3 exon 62179132 62179240 62179132 ID=Msa0823500-mRNA-1:exon:19328;Parent=Msa0823500-mRNA-1
chr5_3 exon 62180180 62180225 62180180 ID=Msa0823500-mRNA-1:exon:19327;Parent=Msa0823500-mRNA-1
chr5_3 exon 62180321 62180411 62180321 ID=Msa0823500-mRNA-1:exon:19326;Parent=Msa0823500-mRNA-1
chr5_3 exon 62180608 62180892 62180608 ID=Msa0823500-mRNA-1:exon:19325;Parent=Msa0823500-mRNA-1
chr5_3 five_prime_UTR 62180608 62180892 62180608 ID=Msa0823500-mRNA-1:five_prime_utr;Parent=Msa0823500-mRNA-1
chr5_3 five_prime_UTR 62180386 62180411 62180386 ID=Msa0823500-mRNA-1:five_prime_utr;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62180321 62180385 62180321 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62180180 62180225 62180180 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62179132 62179240 62179132 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62178541 62178632 62178541 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62178382 62178444 62178382 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62178087 62178205 62178087 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62177580 62177655 62177580 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 CDS 62177266 62177322 62177266 ID=Msa0823500-mRNA-1:cds;Parent=Msa0823500-mRNA-1
chr5_3 three_prime_UTR 62177009 62177265 62177009 ID=Msa0823500-mRNA-1:three_prime_utr;Parent=Msa0823500-mRNA-1
Gene Sequence

>Msa0823500

ATGGAAGGTGTTGTTGTGAGAAGGGTCATTCCTTCTGATAATAGTTGTCTTTTTAATGCAGTTGGATATGTTATGGATCGTGACCAAACTAAAGCTGCTGAGTTGAGACAGGTTATAGCTGCAACAGTAGCTAGTGATCCTGAGAAATATTCTGAAGCATTTCTTGGGAAGCCAAATTCAGCCTATTGTAACTGGATTCTTGACCCAGAGAAGTGGGGAGGTGCGATTGAACTCTCAATATTAGCAGATTATTATGGACGTGAAATCGCAGCCTATGATATCCAGACAACACGATGCGATTTGTACGGTCAGGAAGGTAATTATTCTGAAAGGGTGATGCTGATTTATGATGGTCTCCACTACGATGCTTTAGCTATGTCTCCTGTTGAAGGAGCTCCAGAGGATTTTGACCAGACCATATTTGCCATACAAAAGACCAGAAGCATTGGACCTGTTGAGGGGATTGCTTTAAATTTTATTAAAGACCAACATAGGAAACGGAGATTCACCGACACTGCCAACTTCACTCTACGATGTGGGGTATGCCAAATTGGAGTCATTGGTCAGAAGGAGGCAGCGGAGCACGCTCAAGCAACTGGTCATGTAAACTTTCAAGAATATAAATGA

Protein sequence

>Msa0823500

MEGVVVRRVIPSDNSCLFNAVGYVMDRDQTKAAELRQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEGNYSERVMLIYDGLHYDALAMSPVEGAPEDFDQTIFAIQKTRSIGPVEGIALNFIKDQHRKRRFTDTANFTLRCGVCQIGVIGQKEAAEHAQATGHVNFQEYK*