AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0326560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326560 MtrunA17_Chr2g0305901 97.955 489 10 0 1 489 1 489 0.0 949
Msa0326560 MtrunA17_Chr4g0020881 54.886 481 187 4 24 487 31 498 0.0 524
Msa0326560 MtrunA17_Chr4g0055641 55.031 487 208 4 3 489 2 477 9.02e-174 498
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326560 AT2G13100.4 72.541 488 129 2 4 489 2 486 0.0 713
Msa0326560 AT2G13100.1 72.541 488 129 2 4 489 2 486 0.0 713
Msa0326560 AT3G47420.2 53.937 508 202 5 1 487 5 501 0.0 520
Msa0326560 AT3G47420.1 53.937 508 202 5 1 487 5 501 0.0 520
Msa0326560 AT3G47420.3 53.937 508 202 5 1 487 5 501 0.0 520
Msa0326560 AT1G30560.1 51.324 491 211 4 16 489 10 489 6.20e-177 507
Msa0326560 AT4G17550.1 50.854 527 217 3 1 486 1 526 2.33e-174 501
Msa0326560 AT4G25220.1 53.132 463 198 4 30 489 36 482 7.01e-171 491
Msa0326560 AT2G13100.2 73.092 249 64 1 241 489 89 334 1.64e-124 367
Msa0326560 AT2G13100.2 70.732 82 24 0 4 85 2 83 4.37e-32 126
Msa0326560 AT2G13100.3 77.982 218 48 0 272 489 83 300 3.61e-117 347
Msa0326560 AT2G13100.3 67.045 88 29 0 4 91 2 89 9.91e-33 127

Find 146 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAGAGAGAAGCTTTC+AGG 0.190851 2_4:+36750716 Msa0326560:CDS
AGAGATTCTAATATTAATTT+AGG 0.190955 2_4:+36749074 Msa0326560:five_prime_UTR
TTACTCCATTGGCATGTATT+TGG 0.217319 2_4:+36749421 Msa0326560:CDS
ATCACCTTGATGTTTCTTTC+TGG 0.224719 2_4:+36750437 Msa0326560:CDS
TGTTGGCACCAAATCTTAAA+TGG 0.258521 2_4:-36749000 None:intergenic
TTGAGGTTGTTTCTTGTGTT+TGG 0.258719 2_4:+36749470 Msa0326560:CDS
TTCCATCACCATTTAAGATT+TGG 0.266246 2_4:+36748992 Msa0326560:five_prime_UTR
CCTTGTGTTGTTGCAGTTGT+TGG 0.271567 2_4:+36749614 Msa0326560:CDS
CAGTTGTTGGGAATTGGCTT+GGG 0.271735 2_4:+36749627 Msa0326560:CDS
TAGTATTGTTAAAAGTGTTC+TGG 0.280648 2_4:+36749292 Msa0326560:CDS
TGATAATAAGAACACATATT+TGG 0.281967 2_4:-36749226 None:intergenic
TTTGATATTGGAGGAGTTCT+AGG 0.290006 2_4:+36750284 Msa0326560:CDS
GGTTATTGCTTCGGGTGTTT+TGG 0.290922 2_4:+36749718 Msa0326560:CDS
CTCATTTCAATTTCCATTCC+AGG 0.291532 2_4:-36749851 None:intergenic
ATCAAAGAGGGGATTGATAA+TGG 0.292694 2_4:+36749652 Msa0326560:CDS
GTTCCTCGAGTTCCATTAAA+AGG 0.293143 2_4:-36749359 None:intergenic
CTATTGGTTGCAGCGGTTGC+TGG 0.298086 2_4:+36750218 Msa0326560:intron
TCAAATTCTTCGTCTGCTAT+TGG 0.299829 2_4:+36749953 Msa0326560:CDS
TTGCTTACACTTTCTTGTAT+TGG 0.304564 2_4:+36750044 Msa0326560:CDS
AAAACCTTTGCGTGGAAAAC+CGG 0.307123 2_4:-36748915 None:intergenic
CATTGGTTCGGTTATTGCTT+CGG 0.314100 2_4:+36749709 Msa0326560:CDS
CTTTCAACAATATTTGATAT+TGG 0.314253 2_4:+36750272 Msa0326560:CDS
TGTGGAGTGTTTCAGTCAAT+TGG 0.315612 2_4:+36749587 Msa0326560:CDS
ACCTGTGTGCCTTATGTAGA+AGG 0.333717 2_4:-36750071 None:intergenic
TGAGGTTGTTTCTTGTGTTT+GGG 0.335721 2_4:+36749471 Msa0326560:CDS
TGGTTTGATGTTCATGTGTT+GGG 0.336491 2_4:+36749539 Msa0326560:CDS
GCTTTAGTGGTGGGAATTCT+CGG 0.342732 2_4:+36750525 Msa0326560:CDS
AACCAATTCAACCCTTGATT+CGG 0.343395 2_4:+36749328 Msa0326560:CDS
GGTTCTGTTGGAGCTGCTCT+TGG 0.349690 2_4:+36750584 Msa0326560:CDS
CACATATTTGGTGGAATAGT+AGG 0.350389 2_4:-36749214 None:intergenic
TCTTAAATGGTGATGGAAAT+TGG 0.355213 2_4:-36748987 None:intergenic
GGGGATTGATAATGGGGATA+TGG 0.364452 2_4:+36749660 Msa0326560:CDS
ACCAATTCAACCCTTGATTC+GGG 0.365317 2_4:+36749329 Msa0326560:CDS
TCAAAGAGGGGATTGATAAT+GGG 0.369497 2_4:+36749653 Msa0326560:CDS
ACCCGAATCAAGGGTTGAAT+TGG 0.376330 2_4:-36749330 None:intergenic
GGTTGGTCGTTTGTGGTGCC+TGG 0.377762 2_4:+36749752 Msa0326560:CDS
TTGTGAATCCGGTGGATATA+GGG 0.382740 2_4:+36749819 Msa0326560:CDS
CTCGGTACGCAGGGCTTTAG+TGG 0.382958 2_4:+36750512 Msa0326560:CDS
GCAGTTGTTGGGAATTGGCT+TGG 0.384000 2_4:+36749626 Msa0326560:CDS
GATTCCATTCTTTACTCATC+AGG 0.400763 2_4:-36749122 None:intergenic
TTGTTGCAGTTGTTGGGAAT+TGG 0.403901 2_4:+36749621 Msa0326560:CDS
GTTGTGAATCCGGTGGATAT+AGG 0.410528 2_4:+36749818 Msa0326560:CDS
TCCATTGGCATGTATTTGGC+TGG 0.414022 2_4:+36749425 Msa0326560:CDS
TGGCTGGTCATGTTGGTGAT+AGG 0.414837 2_4:+36749441 Msa0326560:CDS
ATTGGTTCGGTTATTGCTTC+GGG 0.416295 2_4:+36749710 Msa0326560:CDS
AGTATTGTTAAAAGTGTTCT+GGG 0.416808 2_4:+36749293 Msa0326560:CDS
CTTGTGTTGTTGCAGTTGTT+GGG 0.419466 2_4:+36749615 Msa0326560:CDS
GAATTTGAAATCGAACTATC+AGG 0.420709 2_4:-36749938 None:intergenic
ACCTCGGTTGGGAATATCAT+TGG 0.423859 2_4:+36749692 Msa0326560:CDS
TCTGTTTCTTGTTGTGAATC+CGG 0.429267 2_4:+36749808 Msa0326560:CDS
ATTGGTTACCCTTCTACATA+AGG 0.433887 2_4:+36750062 Msa0326560:CDS
CTGGTTTGATGTTCATGTGT+TGG 0.438300 2_4:+36749538 Msa0326560:CDS
TGGATGGGGTTGGTCGTTTG+TGG 0.439831 2_4:+36749745 Msa0326560:CDS
AACACGACTTACAAGATTGT+TGG 0.442880 2_4:-36749017 None:intergenic
TTTCTTACTTCTTACTCCAT+TGG 0.444854 2_4:+36749410 Msa0326560:CDS
ACTGTTACTGCAATCATTGA+TGG 0.445070 2_4:+36750557 Msa0326560:CDS
AATCTATCTCACAAAACTGC+TGG 0.446010 2_4:+36750245 Msa0326560:CDS
GTGGAGTGTTTCAGTCAATT+GGG 0.451035 2_4:+36749588 Msa0326560:CDS
AGATAAGAGAGAAGCTTTCA+GGG 0.451142 2_4:+36750717 Msa0326560:CDS
GGTTGGGAATATCATTGGTT+CGG 0.456341 2_4:+36749697 Msa0326560:CDS
GTCGGTGTTCAGATTGTTTG+TGG 0.462172 2_4:+36749569 Msa0326560:CDS
GATATAGGGTTTGCGAGTCC+TGG 0.467048 2_4:+36749833 Msa0326560:CDS
TTTCTTGTGTTTGGGATGGT+TGG 0.472474 2_4:+36749479 Msa0326560:CDS
AACCGGGTTGTGTTCAGATC+GGG 0.473949 2_4:-36748898 None:intergenic
TGGAATTCGCATACCTCGGT+TGG 0.474948 2_4:+36749680 Msa0326560:CDS
ATGCTTCCTTTCATGCATCT+AGG 0.475318 2_4:+36749261 Msa0326560:CDS
CACAGATTTGATTATAGTCT+AGG 0.479247 2_4:+36750764 Msa0326560:three_prime_UTR
GGCTGCCGATCTCGGTACGC+AGG 0.479417 2_4:+36750502 Msa0326560:CDS
TGGAGCTAGGCTCAAACTCT+TGG 0.480620 2_4:-36749150 None:intergenic
AGCAGGTTACGTTTCAACTA+GGG 0.483135 2_4:+36750616 Msa0326560:CDS
CTTTAGTGGTGGGAATTCTC+GGG 0.483451 2_4:+36750526 Msa0326560:CDS
ATTGGCTTGGGGAATCAAAG+AGG 0.486300 2_4:+36749639 Msa0326560:CDS
TAGCAGGTTACGTTTCAACT+AGG 0.486302 2_4:+36750615 Msa0326560:CDS
ACTGCTGTGGCTGCCGATCT+CGG 0.489455 2_4:+36750494 Msa0326560:CDS
CACCAAATCTTAAATGGTGA+TGG 0.493676 2_4:-36748994 None:intergenic
GTGTTTGGGATGGTTGGTAG+TGG 0.494247 2_4:+36749485 Msa0326560:CDS
TGGTGGGAATTCTCGGGCAC+TGG 0.495438 2_4:+36750532 Msa0326560:CDS
AAGGCGGCCAACCCGAATCA+AGG 0.499130 2_4:-36749340 None:intergenic
GAAATTGGTGAGAGCAAGAG+AGG 0.501444 2_4:-36748972 None:intergenic
AAACCTTTGCGTGGAAAACC+GGG 0.501724 2_4:-36748914 None:intergenic
ACTCGAGGAACTCGCCGGCT+TGG 0.503481 2_4:+36749371 Msa0326560:CDS
AATCATATCAGAAATGAAAC+CGG 0.508019 2_4:-36750318 None:intergenic
TCAACAATATTTGATATTGG+AGG 0.508821 2_4:+36750275 Msa0326560:CDS
GGTACGCAGGGCTTTAGTGG+TGG 0.512487 2_4:+36750515 Msa0326560:CDS
ACTGCAATCATTGATGGTAC+TGG 0.512877 2_4:+36750563 Msa0326560:CDS
TATTCTTGATTCAAGTTGCA+AGG 0.512896 2_4:+36750690 Msa0326560:CDS
AAAGCCCTGCGTACCGAGAT+CGG 0.516139 2_4:-36750507 None:intergenic
GTTGTTTCTTGTGTTTGGGA+TGG 0.516674 2_4:+36749475 Msa0326560:CDS
GCACGATACAAAAGCAGAGC+TGG 0.518122 2_4:-36750386 None:intergenic
GAATCAAGGGTTGAATTGGT+TGG 0.521050 2_4:-36749326 None:intergenic
ACATATTTGGTGGAATAGTA+GGG 0.524391 2_4:-36749213 None:intergenic
AGGAACTCGCCGGCTTGGCG+AGG 0.524885 2_4:+36749376 Msa0326560:CDS
GTTGAATTGGTTGGAACTGT+GGG 0.528850 2_4:-36749317 None:intergenic
GGAATTCGCATACCTCGGTT+GGG 0.531280 2_4:+36749681 Msa0326560:CDS
GAATCGATAGAAACAAGAAC+AGG 0.531762 2_4:-36750364 None:intergenic
CAAAGAGGGGATTGATAATG+GGG 0.532878 2_4:+36749654 Msa0326560:CDS
CGAGATCAACCTCGCCAAGC+CGG 0.534196 2_4:-36749385 None:intergenic
GAATCCTGATGAGTAAAGAA+TGG 0.534223 2_4:+36749118 Msa0326560:exon
GTACGCAGGGCTTTAGTGGT+GGG 0.535609 2_4:+36750516 Msa0326560:CDS
TTAGAGGCGTGGAAAATACC+TGG 0.539044 2_4:+36749980 Msa0326560:CDS
ATCTATCTCACAAAACTGCT+GGG 0.540237 2_4:+36750246 Msa0326560:CDS
ATTCAACCCTTGATTCGGGT+TGG 0.543048 2_4:+36749333 Msa0326560:CDS
AGTTGTTGGGAATTGGCTTG+GGG 0.544754 2_4:+36749628 Msa0326560:CDS
ATGGAACTCGAGGAACTCGC+CGG 0.545124 2_4:+36749366 Msa0326560:CDS
GAAACGTAACCTGCTAAAAG+TGG 0.547953 2_4:-36750608 None:intergenic
AGAGATTCAGAGCTGGAGCT+AGG 0.548429 2_4:-36749163 None:intergenic
TAATAAGAACACATATTTGG+TGG 0.548927 2_4:-36749223 None:intergenic
GCTGCCGATCTCGGTACGCA+GGG 0.553404 2_4:+36750503 Msa0326560:CDS
AAACCGGGTTGTGTTCAGAT+CGG 0.553649 2_4:-36748899 None:intergenic
AAAGCAAACGGAGCGACTCC+AGG 0.556148 2_4:-36749998 None:intergenic
GGTTGAATTGGTTGGAACTG+TGG 0.556170 2_4:-36749318 None:intergenic
AGGGTTTGCGAGTCCTGGAA+TGG 0.556603 2_4:+36749838 Msa0326560:CDS
GCAGTTGTAATTAGCGAGTA+CGG 0.564151 2_4:-36750476 None:intergenic
ATTGATGGTACTGGTTCTGT+TGG 0.568619 2_4:+36750572 Msa0326560:CDS
AGGCTTCCTAGATGCATGAA+AGG 0.573970 2_4:-36749267 None:intergenic
GGTTTGATGTTCATGTGTTG+GGG 0.575219 2_4:+36749540 Msa0326560:CDS
TTGGCTTGGGGAATCAAAGA+GGG 0.575740 2_4:+36749640 Msa0326560:CDS
ATGTATTTGGCTGGTCATGT+TGG 0.577593 2_4:+36749434 Msa0326560:CDS
TTTGGAAAGAGATTCAGAGC+TGG 0.577955 2_4:-36749170 None:intergenic
CCAACAACTGCAACAACACA+AGG 0.578535 2_4:-36749614 None:intergenic
AAATCCAGAAAGAAACATCA+AGG 0.579928 2_4:-36750441 None:intergenic
GCAGGTTACGTTTCAACTAG+GGG 0.580321 2_4:+36750617 Msa0326560:CDS
GTTCTAGGCGGAATCACCGC+CGG 0.584479 2_4:+36750299 Msa0326560:CDS
GTTACGTTTCAACTAGGGGA+TGG 0.588834 2_4:+36750621 Msa0326560:CDS
TGTTGAAAGGGACGGTGCAG+AGG 0.590416 2_4:+36749874 Msa0326560:CDS
AGCCCGATCTGAACACAACC+CGG 0.596321 2_4:+36748896 Msa0326560:five_prime_UTR
ACGAAAATGATCGAAACTCC+AGG 0.597653 2_4:-36749770 None:intergenic
AATTGAAATGAGTGTTGAAA+GGG 0.597953 2_4:+36749862 Msa0326560:CDS
CTCGCAAACCCTATATCCAC+CGG 0.599278 2_4:-36749827 None:intergenic
TCTGCAGAAAGTCGAATCAG+AGG 0.600067 2_4:+36749898 Msa0326560:CDS
AGGCGGCCAACCCGAATCAA+GGG 0.601656 2_4:-36749339 None:intergenic
ACCAGCCAAATACATGCCAA+TGG 0.609265 2_4:-36749426 None:intergenic
CTCGCTAATTACAACTGCTG+TGG 0.611850 2_4:+36750481 Msa0326560:CDS
TTGGTGATAGGATTGATTTG+AGG 0.616292 2_4:+36749453 Msa0326560:CDS
CCTGTGTGCCTTATGTAGAA+GGG 0.616762 2_4:-36750070 None:intergenic
CCCTTCTACATAAGGCACAC+AGG 0.627165 2_4:+36750070 Msa0326560:CDS
AAATTGAAATGAGTGTTGAA+AGG 0.632392 2_4:+36749861 Msa0326560:CDS
GATATGGAATTCGCATACCT+CGG 0.635544 2_4:+36749676 Msa0326560:CDS
GAGTGTTTCAGTCAATTGGG+TGG 0.653771 2_4:+36749591 Msa0326560:CDS
GTTTCTTGTTGTGAATCCGG+TGG 0.666770 2_4:+36749811 Msa0326560:CDS
CCTCGAGTTCCATTAAAAGG+CGG 0.667716 2_4:-36749356 None:intergenic
ACCAATGATATTCCCAACCG+AGG 0.672100 2_4:-36749693 None:intergenic
TGGCTTGGGGAATCAAAGAG+GGG 0.677167 2_4:+36749641 Msa0326560:CDS
CATATCAGAAATGAAACCGG+CGG 0.690344 2_4:-36750315 None:intergenic
GATATTGGAGGAGTTCTAGG+CGG 0.700532 2_4:+36750287 Msa0326560:CDS
GAAATGAGTGTTGAAAGGGA+CGG 0.799585 2_4:+36749866 Msa0326560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATCATAATTCA+TGG - chr2_4:36750181-36750200 None:intergenic 10.0%
!! AAAAAAAATATCATAATTCA+TGG - chr2_4:36750181-36750200 None:intergenic 10.0%
!! AGAGATTCTAATATTAATTT+AGG + chr2_4:36749074-36749093 Msa0326560:five_prime_UTR 15.0%
!! AGAGATTCTAATATTAATTT+AGG + chr2_4:36749074-36749093 Msa0326560:five_prime_UTR 15.0%
!! TGATAATAAGAACACATATT+TGG - chr2_4:36749229-36749248 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG + chr2_4:36749507-36749526 Msa0326560:CDS 20.0%
!! TATGTAAACTGAATAAGATA+TGG - chr2_4:36750154-36750173 None:intergenic 20.0%
!!! TTGAATTCGTTATTTTCTAT+TGG + chr2_4:36750202-36750221 Msa0326560:intron 20.0%
!! CTTTCAACAATATTTGATAT+TGG + chr2_4:36750272-36750291 Msa0326560:CDS 20.0%
!!! GTTATTGATGAAGAAATTTT+TGG + chr2_4:36750834-36750853 Msa0326560:three_prime_UTR 20.0%
!!! ACTGTAGACATTTTTATTAA+AGG - chr2_4:36750915-36750934 None:intergenic 20.0%
!! TGATAATAAGAACACATATT+TGG - chr2_4:36749229-36749248 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG + chr2_4:36749507-36749526 Msa0326560:CDS 20.0%
!! TATGTAAACTGAATAAGATA+TGG - chr2_4:36750154-36750173 None:intergenic 20.0%
!!! TTGAATTCGTTATTTTCTAT+TGG + chr2_4:36750202-36750221 Msa0326560:intron 20.0%
!! CTTTCAACAATATTTGATAT+TGG + chr2_4:36750272-36750291 Msa0326560:CDS 20.0%
!!! GTTATTGATGAAGAAATTTT+TGG + chr2_4:36750834-36750853 Msa0326560:three_prime_UTR 20.0%
!!! ACTGTAGACATTTTTATTAA+AGG - chr2_4:36750915-36750934 None:intergenic 20.0%
! AAAAAAAAAAAACCTTTGCG+TGG - chr2_4:36748926-36748945 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG - chr2_4:36749226-36749245 None:intergenic 25.0%
!! AGAACACTTTTAACAATACT+AGG - chr2_4:36749293-36749312 None:intergenic 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG + chr2_4:36749292-36749311 Msa0326560:CDS 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG + chr2_4:36749293-36749312 Msa0326560:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG + chr2_4:36749506-36749525 Msa0326560:CDS 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG + chr2_4:36749861-36749880 Msa0326560:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG + chr2_4:36749862-36749881 Msa0326560:CDS 25.0%
! AAAAAGAGACAAAAAGCAAA+CGG - chr2_4:36750013-36750032 None:intergenic 25.0%
! TCAACAATATTTGATATTGG+AGG + chr2_4:36750275-36750294 Msa0326560:CDS 25.0%
! AATCATATCAGAAATGAAAC+CGG - chr2_4:36750321-36750340 None:intergenic 25.0%
! AAAAAAAAAAAACCTTTGCG+TGG - chr2_4:36748926-36748945 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG - chr2_4:36749226-36749245 None:intergenic 25.0%
!! AGAACACTTTTAACAATACT+AGG - chr2_4:36749293-36749312 None:intergenic 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG + chr2_4:36749292-36749311 Msa0326560:CDS 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG + chr2_4:36749293-36749312 Msa0326560:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG + chr2_4:36749506-36749525 Msa0326560:CDS 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG + chr2_4:36749861-36749880 Msa0326560:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG + chr2_4:36749862-36749881 Msa0326560:CDS 25.0%
! AAAAAGAGACAAAAAGCAAA+CGG - chr2_4:36750013-36750032 None:intergenic 25.0%
! TCAACAATATTTGATATTGG+AGG + chr2_4:36750275-36750294 Msa0326560:CDS 25.0%
! AATCATATCAGAAATGAAAC+CGG - chr2_4:36750321-36750340 None:intergenic 25.0%
!! TCTTAAATGGTGATGGAAAT+TGG - chr2_4:36748990-36749009 None:intergenic 30.0%
! TTCCATCACCATTTAAGATT+TGG + chr2_4:36748992-36749011 Msa0326560:five_prime_UTR 30.0%
! CGTGTTTTCATCTTCAATTT+TGG + chr2_4:36749034-36749053 Msa0326560:five_prime_UTR 30.0%
! ACATATTTGGTGGAATAGTA+GGG - chr2_4:36749216-36749235 None:intergenic 30.0%
! ACACTTTTAACAATACTAGG+AGG - chr2_4:36749290-36749309 None:intergenic 30.0%
TTTCTTACTTCTTACTCCAT+TGG + chr2_4:36749410-36749429 Msa0326560:CDS 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG + chr2_4:36749512-36749531 Msa0326560:CDS 30.0%
! GAATTTGAAATCGAACTATC+AGG - chr2_4:36749941-36749960 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG + chr2_4:36750044-36750063 Msa0326560:CDS 30.0%
!! TTATTTTCTATTGGTTGCAG+CGG + chr2_4:36750211-36750230 Msa0326560:intron 30.0%
AAATCCAGAAAGAAACATCA+AGG - chr2_4:36750444-36750463 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG + chr2_4:36750445-36750464 Msa0326560:CDS 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG + chr2_4:36750690-36750709 Msa0326560:CDS 30.0%
CACAGATTTGATTATAGTCT+AGG + chr2_4:36750764-36750783 Msa0326560:three_prime_UTR 30.0%
AATTCAAAAACGTCGTTTGT+TGG - chr2_4:36748869-36748888 None:intergenic 30.0%
!! TCTTAAATGGTGATGGAAAT+TGG - chr2_4:36748990-36749009 None:intergenic 30.0%
! TTCCATCACCATTTAAGATT+TGG + chr2_4:36748992-36749011 Msa0326560:five_prime_UTR 30.0%
! CGTGTTTTCATCTTCAATTT+TGG + chr2_4:36749034-36749053 Msa0326560:five_prime_UTR 30.0%
! ACATATTTGGTGGAATAGTA+GGG - chr2_4:36749216-36749235 None:intergenic 30.0%
! ACACTTTTAACAATACTAGG+AGG - chr2_4:36749290-36749309 None:intergenic 30.0%
TTTCTTACTTCTTACTCCAT+TGG + chr2_4:36749410-36749429 Msa0326560:CDS 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG + chr2_4:36749512-36749531 Msa0326560:CDS 30.0%
! GAATTTGAAATCGAACTATC+AGG - chr2_4:36749941-36749960 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG + chr2_4:36750044-36750063 Msa0326560:CDS 30.0%
!! TTATTTTCTATTGGTTGCAG+CGG + chr2_4:36750211-36750230 Msa0326560:intron 30.0%
AAATCCAGAAAGAAACATCA+AGG - chr2_4:36750444-36750463 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG + chr2_4:36750445-36750464 Msa0326560:CDS 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG + chr2_4:36750690-36750709 Msa0326560:CDS 30.0%
CACAGATTTGATTATAGTCT+AGG + chr2_4:36750764-36750783 Msa0326560:three_prime_UTR 30.0%
CACCAAATCTTAAATGGTGA+TGG - chr2_4:36748997-36749016 None:intergenic 35.0%
TGTTGGCACCAAATCTTAAA+TGG - chr2_4:36749003-36749022 None:intergenic 35.0%
AACACGACTTACAAGATTGT+TGG - chr2_4:36749020-36749039 None:intergenic 35.0%
GAATCCTGATGAGTAAAGAA+TGG + chr2_4:36749118-36749137 Msa0326560:exon 35.0%
GATTCCATTCTTTACTCATC+AGG - chr2_4:36749125-36749144 None:intergenic 35.0%
! CACATATTTGGTGGAATAGT+AGG - chr2_4:36749217-36749236 None:intergenic 35.0%
AACCAATTCAACCCTTGATT+CGG + chr2_4:36749328-36749347 Msa0326560:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG + chr2_4:36749421-36749440 Msa0326560:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG + chr2_4:36749453-36749472 Msa0326560:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG + chr2_4:36749470-36749489 Msa0326560:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG + chr2_4:36749471-36749490 Msa0326560:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG + chr2_4:36749519-36749538 Msa0326560:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG + chr2_4:36749539-36749558 Msa0326560:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG + chr2_4:36749652-36749671 Msa0326560:CDS 35.0%
! TCAAAGAGGGGATTGATAAT+GGG + chr2_4:36749653-36749672 Msa0326560:CDS 35.0%
! GAGTTTCGATCATTTTCGTT+GGG + chr2_4:36749774-36749793 Msa0326560:CDS 35.0%
! AGTTTCGATCATTTTCGTTG+GGG + chr2_4:36749775-36749794 Msa0326560:CDS 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG + chr2_4:36749808-36749827 Msa0326560:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG - chr2_4:36749854-36749873 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG + chr2_4:36749953-36749972 Msa0326560:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG + chr2_4:36749964-36749983 Msa0326560:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG + chr2_4:36750062-36750081 Msa0326560:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG + chr2_4:36750245-36750264 Msa0326560:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG + chr2_4:36750246-36750265 Msa0326560:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG + chr2_4:36750284-36750303 Msa0326560:CDS 35.0%
GAATCGATAGAAACAAGAAC+AGG - chr2_4:36750367-36750386 None:intergenic 35.0%
ATCACCTTGATGTTTCTTTC+TGG + chr2_4:36750437-36750456 Msa0326560:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG + chr2_4:36750452-36750471 Msa0326560:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG + chr2_4:36750557-36750576 Msa0326560:CDS 35.0%
! GTTTCGTCTATTTTCTTTGC+TGG + chr2_4:36750665-36750684 Msa0326560:CDS 35.0%
AGATAAGAGAGAAGCTTTCA+GGG + chr2_4:36750717-36750736 Msa0326560:CDS 35.0%
CACCAAATCTTAAATGGTGA+TGG - chr2_4:36748997-36749016 None:intergenic 35.0%
TGTTGGCACCAAATCTTAAA+TGG - chr2_4:36749003-36749022 None:intergenic 35.0%
AACACGACTTACAAGATTGT+TGG - chr2_4:36749020-36749039 None:intergenic 35.0%
GAATCCTGATGAGTAAAGAA+TGG + chr2_4:36749118-36749137 Msa0326560:exon 35.0%
GATTCCATTCTTTACTCATC+AGG - chr2_4:36749125-36749144 None:intergenic 35.0%
! CACATATTTGGTGGAATAGT+AGG - chr2_4:36749217-36749236 None:intergenic 35.0%
AACCAATTCAACCCTTGATT+CGG + chr2_4:36749328-36749347 Msa0326560:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG + chr2_4:36749421-36749440 Msa0326560:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG + chr2_4:36749453-36749472 Msa0326560:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG + chr2_4:36749470-36749489 Msa0326560:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG + chr2_4:36749471-36749490 Msa0326560:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG + chr2_4:36749519-36749538 Msa0326560:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG + chr2_4:36749539-36749558 Msa0326560:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG + chr2_4:36749652-36749671 Msa0326560:CDS 35.0%
! TCAAAGAGGGGATTGATAAT+GGG + chr2_4:36749653-36749672 Msa0326560:CDS 35.0%
! GAGTTTCGATCATTTTCGTT+GGG + chr2_4:36749774-36749793 Msa0326560:CDS 35.0%
! AGTTTCGATCATTTTCGTTG+GGG + chr2_4:36749775-36749794 Msa0326560:CDS 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG + chr2_4:36749808-36749827 Msa0326560:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG - chr2_4:36749854-36749873 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG + chr2_4:36749953-36749972 Msa0326560:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG + chr2_4:36749964-36749983 Msa0326560:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG + chr2_4:36750062-36750081 Msa0326560:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG + chr2_4:36750245-36750264 Msa0326560:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG + chr2_4:36750246-36750265 Msa0326560:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG + chr2_4:36750284-36750303 Msa0326560:CDS 35.0%
GAATCGATAGAAACAAGAAC+AGG - chr2_4:36750367-36750386 None:intergenic 35.0%
ATCACCTTGATGTTTCTTTC+TGG + chr2_4:36750437-36750456 Msa0326560:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG + chr2_4:36750452-36750471 Msa0326560:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG + chr2_4:36750557-36750576 Msa0326560:CDS 35.0%
! GTTTCGTCTATTTTCTTTGC+TGG + chr2_4:36750665-36750684 Msa0326560:CDS 35.0%
AGATAAGAGAGAAGCTTTCA+GGG + chr2_4:36750717-36750736 Msa0326560:CDS 35.0%
AAAACCTTTGCGTGGAAAAC+CGG - chr2_4:36748918-36748937 None:intergenic 40.0%
TTTGGAAAGAGATTCAGAGC+TGG - chr2_4:36749173-36749192 None:intergenic 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG - chr2_4:36749203-36749222 None:intergenic 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG - chr2_4:36749204-36749223 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG - chr2_4:36749205-36749224 None:intergenic 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG - chr2_4:36749206-36749225 None:intergenic 40.0%
ATGCTTCCTTTCATGCATCT+AGG + chr2_4:36749261-36749280 Msa0326560:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG - chr2_4:36749320-36749339 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG - chr2_4:36749329-36749348 None:intergenic 40.0%
ACCAATTCAACCCTTGATTC+GGG + chr2_4:36749329-36749348 Msa0326560:CDS 40.0%
GTTCCTCGAGTTCCATTAAA+AGG - chr2_4:36749362-36749381 None:intergenic 40.0%
! ATGTATTTGGCTGGTCATGT+TGG + chr2_4:36749434-36749453 Msa0326560:CDS 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG + chr2_4:36749475-36749494 Msa0326560:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+TGG + chr2_4:36749479-36749498 Msa0326560:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG + chr2_4:36749538-36749557 Msa0326560:CDS 40.0%
GGTTTGATGTTCATGTGTTG+GGG + chr2_4:36749540-36749559 Msa0326560:CDS 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG + chr2_4:36749551-36749570 Msa0326560:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG + chr2_4:36749587-36749606 Msa0326560:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG + chr2_4:36749588-36749607 Msa0326560:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG + chr2_4:36749615-36749634 Msa0326560:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG + chr2_4:36749621-36749640 Msa0326560:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG + chr2_4:36749654-36749673 Msa0326560:CDS 40.0%
GATATGGAATTCGCATACCT+CGG + chr2_4:36749676-36749695 Msa0326560:CDS 40.0%
! GGTTGGGAATATCATTGGTT+CGG + chr2_4:36749697-36749716 Msa0326560:CDS 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG + chr2_4:36749709-36749728 Msa0326560:CDS 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG + chr2_4:36749710-36749729 Msa0326560:CDS 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG + chr2_4:36749730-36749749 Msa0326560:CDS 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG + chr2_4:36749731-36749750 Msa0326560:CDS 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG + chr2_4:36749735-36749754 Msa0326560:CDS 40.0%
ACGAAAATGATCGAAACTCC+AGG - chr2_4:36749773-36749792 None:intergenic 40.0%
! GGAGTTTCGATCATTTTCGT+TGG + chr2_4:36749773-36749792 Msa0326560:CDS 40.0%
! GATCATTTTCGTTGGGGTTT+TGG + chr2_4:36749781-36749800 Msa0326560:CDS 40.0%
TTGTGAATCCGGTGGATATA+GGG + chr2_4:36749819-36749838 Msa0326560:CDS 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG + chr2_4:36749866-36749885 Msa0326560:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG + chr2_4:36749969-36749988 Msa0326560:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG - chr2_4:36750318-36750337 None:intergenic 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG + chr2_4:36750392-36750411 Msa0326560:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG + chr2_4:36750393-36750412 Msa0326560:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG - chr2_4:36750479-36750498 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG + chr2_4:36750563-36750582 Msa0326560:CDS 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG + chr2_4:36750572-36750591 Msa0326560:CDS 40.0%
GAAACGTAACCTGCTAAAAG+TGG - chr2_4:36750611-36750630 None:intergenic 40.0%
TAGCAGGTTACGTTTCAACT+AGG + chr2_4:36750615-36750634 Msa0326560:CDS 40.0%
AGCAGGTTACGTTTCAACTA+GGG + chr2_4:36750616-36750635 Msa0326560:CDS 40.0%
GAGATAAGAGAGAAGCTTTC+AGG + chr2_4:36750716-36750735 Msa0326560:CDS 40.0%
AAAACCTTTGCGTGGAAAAC+CGG - chr2_4:36748918-36748937 None:intergenic 40.0%
TTTGGAAAGAGATTCAGAGC+TGG - chr2_4:36749173-36749192 None:intergenic 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG - chr2_4:36749203-36749222 None:intergenic 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG - chr2_4:36749204-36749223 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG - chr2_4:36749205-36749224 None:intergenic 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG - chr2_4:36749206-36749225 None:intergenic 40.0%
ATGCTTCCTTTCATGCATCT+AGG + chr2_4:36749261-36749280 Msa0326560:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG - chr2_4:36749320-36749339 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG - chr2_4:36749329-36749348 None:intergenic 40.0%
ACCAATTCAACCCTTGATTC+GGG + chr2_4:36749329-36749348 Msa0326560:CDS 40.0%
GTTCCTCGAGTTCCATTAAA+AGG - chr2_4:36749362-36749381 None:intergenic 40.0%
! ATGTATTTGGCTGGTCATGT+TGG + chr2_4:36749434-36749453 Msa0326560:CDS 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG + chr2_4:36749475-36749494 Msa0326560:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+TGG + chr2_4:36749479-36749498 Msa0326560:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG + chr2_4:36749538-36749557 Msa0326560:CDS 40.0%
GGTTTGATGTTCATGTGTTG+GGG + chr2_4:36749540-36749559 Msa0326560:CDS 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG + chr2_4:36749551-36749570 Msa0326560:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG + chr2_4:36749587-36749606 Msa0326560:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG + chr2_4:36749588-36749607 Msa0326560:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG + chr2_4:36749615-36749634 Msa0326560:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG + chr2_4:36749621-36749640 Msa0326560:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG + chr2_4:36749654-36749673 Msa0326560:CDS 40.0%
GATATGGAATTCGCATACCT+CGG + chr2_4:36749676-36749695 Msa0326560:CDS 40.0%
! GGTTGGGAATATCATTGGTT+CGG + chr2_4:36749697-36749716 Msa0326560:CDS 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG + chr2_4:36749709-36749728 Msa0326560:CDS 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG + chr2_4:36749710-36749729 Msa0326560:CDS 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG + chr2_4:36749730-36749749 Msa0326560:CDS 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG + chr2_4:36749731-36749750 Msa0326560:CDS 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG + chr2_4:36749735-36749754 Msa0326560:CDS 40.0%
ACGAAAATGATCGAAACTCC+AGG - chr2_4:36749773-36749792 None:intergenic 40.0%
! GGAGTTTCGATCATTTTCGT+TGG + chr2_4:36749773-36749792 Msa0326560:CDS 40.0%
! GATCATTTTCGTTGGGGTTT+TGG + chr2_4:36749781-36749800 Msa0326560:CDS 40.0%
TTGTGAATCCGGTGGATATA+GGG + chr2_4:36749819-36749838 Msa0326560:CDS 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG + chr2_4:36749866-36749885 Msa0326560:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG + chr2_4:36749969-36749988 Msa0326560:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG - chr2_4:36750318-36750337 None:intergenic 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG + chr2_4:36750392-36750411 Msa0326560:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG + chr2_4:36750393-36750412 Msa0326560:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG - chr2_4:36750479-36750498 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG + chr2_4:36750563-36750582 Msa0326560:CDS 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG + chr2_4:36750572-36750591 Msa0326560:CDS 40.0%
GAAACGTAACCTGCTAAAAG+TGG - chr2_4:36750611-36750630 None:intergenic 40.0%
TAGCAGGTTACGTTTCAACT+AGG + chr2_4:36750615-36750634 Msa0326560:CDS 40.0%
AGCAGGTTACGTTTCAACTA+GGG + chr2_4:36750616-36750635 Msa0326560:CDS 40.0%
GAGATAAGAGAGAAGCTTTC+AGG + chr2_4:36750716-36750735 Msa0326560:CDS 40.0%
AAACCGGGTTGTGTTCAGAT+CGG - chr2_4:36748902-36748921 None:intergenic 45.0%
AAACCTTTGCGTGGAAAACC+GGG - chr2_4:36748917-36748936 None:intergenic 45.0%
GAAATTGGTGAGAGCAAGAG+AGG - chr2_4:36748975-36748994 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG - chr2_4:36749270-36749289 None:intergenic 45.0%
GGTTGAATTGGTTGGAACTG+TGG - chr2_4:36749321-36749340 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG - chr2_4:36749333-36749352 None:intergenic 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG + chr2_4:36749333-36749352 Msa0326560:CDS 45.0%
CCTCGAGTTCCATTAAAAGG+CGG - chr2_4:36749359-36749378 None:intergenic 45.0%
TCCATTGGCATGTATTTGGC+TGG + chr2_4:36749425-36749444 Msa0326560:CDS 45.0%
ACCAGCCAAATACATGCCAA+TGG - chr2_4:36749429-36749448 None:intergenic 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG + chr2_4:36749569-36749588 Msa0326560:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG + chr2_4:36749591-36749610 Msa0326560:CDS 45.0%
CCAACAACTGCAACAACACA+AGG - chr2_4:36749617-36749636 None:intergenic 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG + chr2_4:36749614-36749633 Msa0326560:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG + chr2_4:36749627-36749646 Msa0326560:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG + chr2_4:36749628-36749647 Msa0326560:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG + chr2_4:36749639-36749658 Msa0326560:CDS 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG + chr2_4:36749640-36749659 Msa0326560:CDS 45.0%
!! GGGGATTGATAATGGGGATA+TGG + chr2_4:36749660-36749679 Msa0326560:CDS 45.0%
ACCTCGGTTGGGAATATCAT+TGG + chr2_4:36749692-36749711 Msa0326560:CDS 45.0%
ACCAATGATATTCCCAACCG+AGG - chr2_4:36749696-36749715 None:intergenic 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG + chr2_4:36749718-36749737 Msa0326560:CDS 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG + chr2_4:36749725-36749744 Msa0326560:CDS 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG + chr2_4:36749729-36749748 Msa0326560:CDS 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG + chr2_4:36749811-36749830 Msa0326560:CDS 45.0%
GTTGTGAATCCGGTGGATAT+AGG + chr2_4:36749818-36749837 Msa0326560:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG + chr2_4:36749898-36749917 Msa0326560:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG + chr2_4:36749980-36749999 Msa0326560:CDS 45.0%
CCTGTGTGCCTTATGTAGAA+GGG - chr2_4:36750073-36750092 None:intergenic 45.0%
ACCTGTGTGCCTTATGTAGA+AGG - chr2_4:36750074-36750093 None:intergenic 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG + chr2_4:36750287-36750306 Msa0326560:CDS 45.0%
CTCGCTAATTACAACTGCTG+TGG + chr2_4:36750481-36750500 Msa0326560:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG + chr2_4:36750525-36750544 Msa0326560:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG + chr2_4:36750526-36750545 Msa0326560:CDS 45.0%
GCAGGTTACGTTTCAACTAG+GGG + chr2_4:36750617-36750636 Msa0326560:CDS 45.0%
GTTACGTTTCAACTAGGGGA+TGG + chr2_4:36750621-36750640 Msa0326560:CDS 45.0%
AAACCGGGTTGTGTTCAGAT+CGG - chr2_4:36748902-36748921 None:intergenic 45.0%
AAACCTTTGCGTGGAAAACC+GGG - chr2_4:36748917-36748936 None:intergenic 45.0%
GAAATTGGTGAGAGCAAGAG+AGG - chr2_4:36748975-36748994 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG - chr2_4:36749270-36749289 None:intergenic 45.0%
GGTTGAATTGGTTGGAACTG+TGG - chr2_4:36749321-36749340 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG - chr2_4:36749333-36749352 None:intergenic 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG + chr2_4:36749333-36749352 Msa0326560:CDS 45.0%
CCTCGAGTTCCATTAAAAGG+CGG - chr2_4:36749359-36749378 None:intergenic 45.0%
TCCATTGGCATGTATTTGGC+TGG + chr2_4:36749425-36749444 Msa0326560:CDS 45.0%
ACCAGCCAAATACATGCCAA+TGG - chr2_4:36749429-36749448 None:intergenic 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG + chr2_4:36749569-36749588 Msa0326560:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG + chr2_4:36749591-36749610 Msa0326560:CDS 45.0%
CCAACAACTGCAACAACACA+AGG - chr2_4:36749617-36749636 None:intergenic 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG + chr2_4:36749614-36749633 Msa0326560:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG + chr2_4:36749627-36749646 Msa0326560:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG + chr2_4:36749628-36749647 Msa0326560:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG + chr2_4:36749639-36749658 Msa0326560:CDS 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG + chr2_4:36749640-36749659 Msa0326560:CDS 45.0%
!! GGGGATTGATAATGGGGATA+TGG + chr2_4:36749660-36749679 Msa0326560:CDS 45.0%
ACCTCGGTTGGGAATATCAT+TGG + chr2_4:36749692-36749711 Msa0326560:CDS 45.0%
ACCAATGATATTCCCAACCG+AGG - chr2_4:36749696-36749715 None:intergenic 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG + chr2_4:36749718-36749737 Msa0326560:CDS 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG + chr2_4:36749725-36749744 Msa0326560:CDS 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG + chr2_4:36749729-36749748 Msa0326560:CDS 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG + chr2_4:36749811-36749830 Msa0326560:CDS 45.0%
GTTGTGAATCCGGTGGATAT+AGG + chr2_4:36749818-36749837 Msa0326560:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG + chr2_4:36749898-36749917 Msa0326560:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG + chr2_4:36749980-36749999 Msa0326560:CDS 45.0%
CCTGTGTGCCTTATGTAGAA+GGG - chr2_4:36750073-36750092 None:intergenic 45.0%
ACCTGTGTGCCTTATGTAGA+AGG - chr2_4:36750074-36750093 None:intergenic 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG + chr2_4:36750287-36750306 Msa0326560:CDS 45.0%
CTCGCTAATTACAACTGCTG+TGG + chr2_4:36750481-36750500 Msa0326560:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG + chr2_4:36750525-36750544 Msa0326560:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG + chr2_4:36750526-36750545 Msa0326560:CDS 45.0%
GCAGGTTACGTTTCAACTAG+GGG + chr2_4:36750617-36750636 Msa0326560:CDS 45.0%
GTTACGTTTCAACTAGGGGA+TGG + chr2_4:36750621-36750640 Msa0326560:CDS 45.0%
AACCGGGTTGTGTTCAGATC+GGG - chr2_4:36748901-36748920 None:intergenic 50.0%
TGGAGCTAGGCTCAAACTCT+TGG - chr2_4:36749153-36749172 None:intergenic 50.0%
AGAGATTCAGAGCTGGAGCT+AGG - chr2_4:36749166-36749185 None:intergenic 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG - chr2_4:36749191-36749210 None:intergenic 50.0%
! CCGCCTTTTAATGGAACTCG+AGG + chr2_4:36749356-36749375 Msa0326560:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG + chr2_4:36749441-36749460 Msa0326560:CDS 50.0%
!! GTGTTTGGGATGGTTGGTAG+TGG + chr2_4:36749485-36749504 Msa0326560:CDS 50.0%
GCAGTTGTTGGGAATTGGCT+TGG + chr2_4:36749626-36749645 Msa0326560:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG + chr2_4:36749641-36749660 Msa0326560:CDS 50.0%
TGGAATTCGCATACCTCGGT+TGG + chr2_4:36749680-36749699 Msa0326560:CDS 50.0%
GGAATTCGCATACCTCGGTT+GGG + chr2_4:36749681-36749700 Msa0326560:CDS 50.0%
CTCGCAAACCCTATATCCAC+CGG - chr2_4:36749830-36749849 None:intergenic 50.0%
GATATAGGGTTTGCGAGTCC+TGG + chr2_4:36749833-36749852 Msa0326560:CDS 50.0%
CCCTTCTACATAAGGCACAC+AGG + chr2_4:36750070-36750089 Msa0326560:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG - chr2_4:36750389-36750408 None:intergenic 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG + chr2_4:36750599-36750618 Msa0326560:CDS 50.0%
AACCGGGTTGTGTTCAGATC+GGG - chr2_4:36748901-36748920 None:intergenic 50.0%
TGGAGCTAGGCTCAAACTCT+TGG - chr2_4:36749153-36749172 None:intergenic 50.0%
AGAGATTCAGAGCTGGAGCT+AGG - chr2_4:36749166-36749185 None:intergenic 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG - chr2_4:36749191-36749210 None:intergenic 50.0%
! CCGCCTTTTAATGGAACTCG+AGG + chr2_4:36749356-36749375 Msa0326560:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG + chr2_4:36749441-36749460 Msa0326560:CDS 50.0%
!! GTGTTTGGGATGGTTGGTAG+TGG + chr2_4:36749485-36749504 Msa0326560:CDS 50.0%
GCAGTTGTTGGGAATTGGCT+TGG + chr2_4:36749626-36749645 Msa0326560:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG + chr2_4:36749641-36749660 Msa0326560:CDS 50.0%
TGGAATTCGCATACCTCGGT+TGG + chr2_4:36749680-36749699 Msa0326560:CDS 50.0%
GGAATTCGCATACCTCGGTT+GGG + chr2_4:36749681-36749700 Msa0326560:CDS 50.0%
CTCGCAAACCCTATATCCAC+CGG - chr2_4:36749830-36749849 None:intergenic 50.0%
GATATAGGGTTTGCGAGTCC+TGG + chr2_4:36749833-36749852 Msa0326560:CDS 50.0%
CCCTTCTACATAAGGCACAC+AGG + chr2_4:36750070-36750089 Msa0326560:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG - chr2_4:36750389-36750408 None:intergenic 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG + chr2_4:36750599-36750618 Msa0326560:CDS 50.0%
AGCCCGATCTGAACACAACC+CGG + chr2_4:36748896-36748915 Msa0326560:five_prime_UTR 55.0%
! CAACCCGGTTTTCCACGCAA+AGG + chr2_4:36748911-36748930 Msa0326560:five_prime_UTR 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG - chr2_4:36749196-36749215 None:intergenic 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG + chr2_4:36749347-36749366 Msa0326560:CDS 55.0%
ATGGAACTCGAGGAACTCGC+CGG + chr2_4:36749366-36749385 Msa0326560:CDS 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG + chr2_4:36749745-36749764 Msa0326560:CDS 55.0%
AGGGTTTGCGAGTCCTGGAA+TGG + chr2_4:36749838-36749857 Msa0326560:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG + chr2_4:36749874-36749893 Msa0326560:CDS 55.0%
AAAGCAAACGGAGCGACTCC+AGG - chr2_4:36750001-36750020 None:intergenic 55.0%
! CTATTGGTTGCAGCGGTTGC+TGG + chr2_4:36750218-36750237 Msa0326560:intron 55.0%
AAAGCCCTGCGTACCGAGAT+CGG - chr2_4:36750510-36750529 None:intergenic 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG + chr2_4:36750516-36750535 Msa0326560:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG + chr2_4:36750584-36750603 Msa0326560:CDS 55.0%
AGCCCGATCTGAACACAACC+CGG + chr2_4:36748896-36748915 Msa0326560:five_prime_UTR 55.0%
! CAACCCGGTTTTCCACGCAA+AGG + chr2_4:36748911-36748930 Msa0326560:five_prime_UTR 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG - chr2_4:36749196-36749215 None:intergenic 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG + chr2_4:36749347-36749366 Msa0326560:CDS 55.0%
ATGGAACTCGAGGAACTCGC+CGG + chr2_4:36749366-36749385 Msa0326560:CDS 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG + chr2_4:36749745-36749764 Msa0326560:CDS 55.0%
AGGGTTTGCGAGTCCTGGAA+TGG + chr2_4:36749838-36749857 Msa0326560:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG + chr2_4:36749874-36749893 Msa0326560:CDS 55.0%
AAAGCAAACGGAGCGACTCC+AGG - chr2_4:36750001-36750020 None:intergenic 55.0%
! CTATTGGTTGCAGCGGTTGC+TGG + chr2_4:36750218-36750237 Msa0326560:intron 55.0%
AAAGCCCTGCGTACCGAGAT+CGG - chr2_4:36750510-36750529 None:intergenic 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG + chr2_4:36750516-36750535 Msa0326560:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG + chr2_4:36750584-36750603 Msa0326560:CDS 55.0%
AGGCGGCCAACCCGAATCAA+GGG - chr2_4:36749342-36749361 None:intergenic 60.0%
AAGGCGGCCAACCCGAATCA+AGG - chr2_4:36749343-36749362 None:intergenic 60.0%
CGAGATCAACCTCGCCAAGC+CGG - chr2_4:36749388-36749407 None:intergenic 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG + chr2_4:36749752-36749771 Msa0326560:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG + chr2_4:36750299-36750318 Msa0326560:CDS 60.0%
ACTGCTGTGGCTGCCGATCT+CGG + chr2_4:36750494-36750513 Msa0326560:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG + chr2_4:36750512-36750531 Msa0326560:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG + chr2_4:36750515-36750534 Msa0326560:CDS 60.0%
TGGTGGGAATTCTCGGGCAC+TGG + chr2_4:36750532-36750551 Msa0326560:CDS 60.0%
AGGCGGCCAACCCGAATCAA+GGG - chr2_4:36749342-36749361 None:intergenic 60.0%
AAGGCGGCCAACCCGAATCA+AGG - chr2_4:36749343-36749362 None:intergenic 60.0%
CGAGATCAACCTCGCCAAGC+CGG - chr2_4:36749388-36749407 None:intergenic 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG + chr2_4:36749752-36749771 Msa0326560:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG + chr2_4:36750299-36750318 Msa0326560:CDS 60.0%
ACTGCTGTGGCTGCCGATCT+CGG + chr2_4:36750494-36750513 Msa0326560:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG + chr2_4:36750512-36750531 Msa0326560:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG + chr2_4:36750515-36750534 Msa0326560:CDS 60.0%
TGGTGGGAATTCTCGGGCAC+TGG + chr2_4:36750532-36750551 Msa0326560:CDS 60.0%
! ACTCGAGGAACTCGCCGGCT+TGG + chr2_4:36749371-36749390 Msa0326560:CDS 65.0%
GCTGCCGATCTCGGTACGCA+GGG + chr2_4:36750503-36750522 Msa0326560:CDS 65.0%
! ACTCGAGGAACTCGCCGGCT+TGG + chr2_4:36749371-36749390 Msa0326560:CDS 65.0%
GCTGCCGATCTCGGTACGCA+GGG + chr2_4:36750503-36750522 Msa0326560:CDS 65.0%
!! AGGAACTCGCCGGCTTGGCG+AGG + chr2_4:36749376-36749395 Msa0326560:CDS 70.0%
GGCTGCCGATCTCGGTACGC+AGG + chr2_4:36750502-36750521 Msa0326560:CDS 70.0%
!! AGGAACTCGCCGGCTTGGCG+AGG + chr2_4:36749376-36749395 Msa0326560:CDS 70.0%
GGCTGCCGATCTCGGTACGC+AGG + chr2_4:36750502-36750521 Msa0326560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 36748867 36750998 36748867 ID=Msa0326560;Name=Msa0326560
chr2_4 mRNA 36748867 36750998 36748867 ID=Msa0326560-mRNA-1;Parent=Msa0326560;Name=Msa0326560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=270|1|1|1|1|1|2|253|489
chr2_4 exon 36748867 36750091 36748867 ID=Msa0326560-mRNA-1:exon:11259;Parent=Msa0326560-mRNA-1
chr2_4 exon 36750231 36750998 36750231 ID=Msa0326560-mRNA-1:exon:11260;Parent=Msa0326560-mRNA-1
chr2_4 five_prime_UTR 36748867 36749136 36748867 ID=Msa0326560-mRNA-1:five_prime_utr;Parent=Msa0326560-mRNA-1
chr2_4 CDS 36749137 36750091 36749137 ID=Msa0326560-mRNA-1:cds;Parent=Msa0326560-mRNA-1
chr2_4 CDS 36750231 36750745 36750231 ID=Msa0326560-mRNA-1:cds;Parent=Msa0326560-mRNA-1
chr2_4 three_prime_UTR 36750746 36750998 36750746 ID=Msa0326560-mRNA-1:three_prime_utr;Parent=Msa0326560-mRNA-1
Gene Sequence

>Msa0326560

ATGGAATCAAATTCCAAGAGTTTGAGCCTAGCTCCAGCTCTGAATCTCTTTCCAAACCTGAAACCCCCTCACAAAACCCTACTATTCCACCAAATATGTGTTCTTATTATCACATTTCTTGCATATGCTTCCTTTCATGCATCTAGGAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACTCGAGGAACTCGCCGGCTTGGCGAGGTTGATCTCGCATTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTTGGTAGTGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCGGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAGTTTCGATCATTTTCGTTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCGGTGGATATAGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAAGGGACGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATCTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTACGTTTCAACTAGGGGATGGAACAGTGTATTTTTTATGCTCGTTTCGTCTATTTTCTTTGCTGGTTTATTCTTGATTCAAGTTGCAAGGACTGAGATAAGAGAGAAGCTTTCAGGGAAGTGA

Protein sequence

>Msa0326560

MESNSKSLSLAPALNLFPNLKPPHKTLLFHQICVLIITFLAYASFHASRKPPSIVKSVLGPTVPTNSTLDSGWPPFNGTRGTRRLGEVDLAFLTSYSIGMYLAGHVGDRIDLRLFLVFGMVGSGFFTILFGLGYWFDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKRGLIMGIWNSHTSVGNIIGSVIASGVLEFGWGWSFVVPGVSIIFVGVLVFLFLVVNPVDIGFASPGMEIEMSVERDGAEDLQKVESEEAKLIDPDSSISNSSSAIGFLEAWKIPGVAPFAFCLFFSKFVAYTFLYWLPFYIRHTAVAGVNLSHKTAGLLSTIFDIGGVLGGITAGFISDMIEARAVTSILFLFLSIPALLLYRAFGSISMFTNITLMFLSGFLVNGPYSLITTAVAADLGTQGFSGGNSRALATVTAIIDGTGSVGAALGPLLAGYVSTRGWNSVFFMLVSSIFFAGLFLIQVARTEIREKLSGK*