AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390480 MtrunA17_Chr5g0415261 100.000 306 0 0 1 306 1 306 0.0 642
Msa0390480 MtrunA17_Chr8g0364041 97.386 306 8 0 1 306 1 306 0.0 626
Msa0390480 MtrunA17_Chr8g0378521 80.263 304 60 0 3 306 5 308 0.0 534
Msa0390480 MtrunA17_Chr7g0268381 79.070 301 63 0 6 306 13 313 0.0 522
Msa0390480 MtrunA17_Chr5g0445011 66.118 304 101 2 5 306 2 305 1.21e-152 429
Msa0390480 MtrunA17_Chr1g0165341 55.960 302 132 1 6 306 2 303 6.33e-128 367
Msa0390480 MtrunA17_Chr1g0190121 45.819 299 153 3 4 294 3 300 2.74e-95 285
Msa0390480 MtrunA17_Chr7g0272371 46.154 299 154 3 7 299 10 307 3.65e-95 284
Msa0390480 MtrunA17_Chr5g0436061 46.102 295 152 3 6 294 24 317 3.14e-94 281
Msa0390480 MtrunA17_Chr7g0274931 47.826 276 142 2 20 294 26 300 4.49e-94 281
Msa0390480 MtrunA17_Chr8g0387541 48.679 265 134 2 20 283 27 290 1.59e-93 280
Msa0390480 MtrunA17_Chr1g0186811 48.175 274 140 2 20 292 26 298 1.43e-91 275
Msa0390480 MtrunA17_Chr8g0334361 44.483 290 152 3 7 288 4 292 1.47e-91 274
Msa0390480 MtrunA17_Chr1g0167751 45.804 286 153 2 20 304 26 310 1.95e-91 275
Msa0390480 MtrunA17_Chr4g0025471 39.792 289 160 5 24 298 673 961 5.96e-60 206
Msa0390480 MtrunA17_Chr3g0097231 42.449 245 135 5 50 290 222 464 1.24e-59 197
Msa0390480 MtrunA17_Chr2g0322121 39.932 293 155 8 24 298 668 957 4.57e-58 201
Msa0390480 MtrunA17_Chr2g0330311 37.884 293 170 8 7 290 202 491 1.48e-56 190
Msa0390480 MtrunA17_Chr2g0330331 43.043 230 125 5 49 274 86 313 3.64e-53 177
Msa0390480 MtrunA17_Chr1g0196211 39.106 179 101 4 102 272 2 180 1.84e-35 128
Msa0390480 MtrunA17_Chr8g0369981 32.414 290 141 10 26 262 107 394 1.62e-31 122
Msa0390480 MtrunA17_Chr2g0330011 40.458 131 68 4 17 138 224 353 1.64e-17 82.0
Msa0390480 MtrunA17_Chr1g0196221 47.059 85 39 1 24 102 552 636 3.41e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390480 AT1G10430.2 94.771 306 16 0 1 306 1 306 0.0 617
Msa0390480 AT1G10430.1 94.771 306 16 0 1 306 1 306 0.0 617
Msa0390480 AT1G59830.1 94.444 306 17 0 1 306 1 306 0.0 612
Msa0390480 AT1G69960.1 91.803 305 25 0 2 306 3 307 0.0 599
Msa0390480 AT2G42500.1 80.066 301 60 0 6 306 13 313 0.0 526
Msa0390480 AT3G58500.1 78.571 308 64 1 1 306 6 313 0.0 525
Msa0390480 AT1G59830.2 93.281 253 17 0 1 253 1 253 5.63e-180 497
Msa0390480 AT5G55260.1 66.118 304 101 2 5 306 2 305 3.18e-154 434
Msa0390480 AT4G26720.1 65.461 304 103 2 5 306 2 305 1.35e-153 432
Msa0390480 AT2G42500.2 68.771 301 47 1 6 306 13 266 2.83e-153 430
Msa0390480 AT5G55260.2 58.261 345 101 3 5 306 2 346 1.01e-145 414
Msa0390480 AT3G19980.1 55.960 302 132 1 6 306 2 303 1.76e-127 366
Msa0390480 AT1G50370.1 55.298 302 134 1 6 306 2 303 2.76e-126 363
Msa0390480 AT2G29400.1 47.253 273 143 1 20 292 43 314 7.42e-96 286
Msa0390480 AT2G39840.1 47.119 295 149 3 6 294 21 314 9.84e-96 286
Msa0390480 AT5G27840.1 47.635 296 148 3 1 290 8 302 1.45e-94 283
Msa0390480 AT5G27840.4 47.635 296 148 3 1 290 8 302 2.32e-94 283
Msa0390480 AT5G27840.2 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0390480 AT5G27840.3 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0390480 AT3G05580.1 47.586 290 145 3 7 290 14 302 2.45e-93 280
Msa0390480 AT1G64040.1 49.434 265 132 2 20 283 27 290 4.04e-93 279
Msa0390480 AT5G43380.1 46.667 285 143 3 7 283 6 289 3.77e-91 275
Msa0390480 AT5G59160.3 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0390480 AT5G59160.2 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0390480 AT5G59160.1 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0390480 AT5G43380.2 46.667 285 143 3 7 283 6 289 5.79e-91 274
Msa0390480 AT4G11240.1 47.547 265 137 2 20 283 27 290 6.70e-91 273
Msa0390480 AT5G43380.3 46.667 285 143 3 7 283 6 289 7.30e-91 273
Msa0390480 AT3G46820.1 45.620 274 147 2 20 292 36 308 6.35e-89 268
Msa0390480 AT2G42500.4 73.214 168 40 2 1 163 6 173 3.05e-84 251
Msa0390480 AT2G42500.3 75.625 160 34 2 1 155 6 165 5.09e-83 248
Msa0390480 AT2G42500.5 70.857 175 44 3 1 170 6 178 1.24e-82 247
Msa0390480 AT3G05580.2 49.187 246 118 3 1 240 8 252 4.58e-80 243
Msa0390480 AT2G42810.1 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0390480 AT2G42810.5 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0390480 AT2G42810.4 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0390480 AT2G42810.2 42.537 268 144 6 31 290 255 520 4.13e-63 208
Msa0390480 AT2G42810.3 42.537 268 144 6 31 290 254 519 4.45e-63 208
Msa0390480 AT4G03080.1 41.481 270 144 5 24 279 554 823 6.11e-60 205
Msa0390480 AT1G03445.2 41.328 271 142 7 24 279 480 748 1.41e-59 203
Msa0390480 AT1G03445.1 41.328 271 142 7 24 279 480 748 1.69e-59 203
Msa0390480 AT2G27210.2 39.655 290 160 6 24 298 674 963 1.24e-58 202
Msa0390480 AT2G27210.1 39.655 290 160 6 24 298 679 968 1.26e-58 202
Msa0390480 AT1G08420.2 40.741 270 146 5 24 279 685 954 4.40e-58 201
Msa0390480 AT1G08420.1 40.741 270 146 5 24 279 690 959 4.64e-58 201
Msa0390480 AT5G63870.1 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0390480 AT5G63870.2 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0390480 AT5G63870.3 36.449 214 97 7 49 225 79 290 2.40e-28 111
Msa0390480 AT1G48120.1 32.087 321 148 11 32 283 635 954 1.52e-26 110
Msa0390480 AT5G10900.3 28.514 249 143 9 20 239 191 433 8.31e-19 87.0
Msa0390480 AT5G10900.2 28.514 249 143 9 20 239 191 433 9.42e-19 87.0
Msa0390480 AT5G10900.1 28.514 249 143 9 20 239 191 433 9.71e-19 87.0

Find 120 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTAATTATCTCTTTA+TGG 0.113568 3_2:-1410585 Msa0390480:CDS
CTGCTGCTGTCTGTCTTATT+TGG 0.178677 3_2:-1406708 Msa0390480:three_prime_UTR
CCACATCGGTAGCAGTAATT+TGG 0.207567 3_2:+1406994 None:intergenic
TAATGGTTTCTTTATATTAC+TGG 0.239909 3_2:+1410969 None:intergenic
GATGAATGCTTGAGAAAATA+TGG 0.265964 3_2:-1407966 Msa0390480:CDS
AGTGGAGACTGTTTCACTTT+TGG 0.279854 3_2:-1408686 Msa0390480:CDS
ATGGCTGCCATTCTGGAAAT+TGG 0.280680 3_2:-1406967 Msa0390480:CDS
TGGGAATATGGCTGCCATTC+TGG 0.284450 3_2:-1406974 Msa0390480:CDS
GATACTAATTATCTCTTTAT+GGG 0.296309 3_2:-1410584 Msa0390480:CDS
TGCTTAGAAACTGCTGAAAT+AGG 0.300474 3_2:-1406436 Msa0390480:three_prime_UTR
ACTGCTGAAATAGGGAATTA+AGG 0.312707 3_2:-1406427 None:intergenic
CTGCTACCGATGTGGGAATA+TGG 0.319446 3_2:-1406986 Msa0390480:CDS
TGGAGGTCTCTCACCATCTT+TGG 0.327030 3_2:-1407782 Msa0390480:CDS
TCTGGAAATTGGAGAGAATA+TGG 0.342558 3_2:-1406956 Msa0390480:CDS
CATGGAGTGCAAGCCTTTAC+CGG 0.348936 3_2:-1410762 Msa0390480:CDS
TTCAGCAGTTTCTAAGCAAC+AGG 0.350221 3_2:+1406441 None:intergenic
GACTGCCCTCATTGAGAGTC+AGG 0.351563 3_2:-1407892 Msa0390480:intron
ACCAATTGTGTCGATTCTAT+TGG 0.351694 3_2:+1406677 None:intergenic
ACCGGTGAAGTGTCCGGTTA+CGG 0.359368 3_2:-1410675 Msa0390480:CDS
CCCAGACGATCGTTGTGGTT+GGG 0.364879 3_2:-1407263 Msa0390480:CDS
GGCTCAATTTGCCTTGGAGC+TGG 0.369766 3_2:+1406910 None:intergenic
CCCCAACCACAACGATCGTC+TGG 0.379839 3_2:+1407262 None:intergenic
GAGATAGAATTACAATTCTC+AGG 0.380189 3_2:-1408642 Msa0390480:CDS
CATGCCGTCACACGCGGATC+TGG 0.408264 3_2:-1410804 Msa0390480:CDS
ACGGTTTGTGGTGATATTCA+TGG 0.413148 3_2:-1410656 Msa0390480:CDS
AGAAAGAAGTAACTACATTC+AGG 0.418324 3_2:+1406837 None:intergenic
CTTACACTTGAGTAATTTGA+CGG 0.424338 3_2:+1408605 None:intergenic
AGAAGATGAAGATGAGGGTT+TGG 0.426868 3_2:+1410897 None:intergenic
CATCTTCTCCGACGAATCTC+CGG 0.433394 3_2:-1410882 Msa0390480:five_prime_UTR
GCTTAGAAACTGCTGAAATA+GGG 0.436312 3_2:-1406435 Msa0390480:three_prime_UTR
TGTTCATTTAAGATTGTGAA+TGG 0.436982 3_2:-1406543 Msa0390480:three_prime_UTR
TTCACATCCGCCTCCGGTAA+AGG 0.440700 3_2:+1410749 None:intergenic
ATATCACCACAAACCGTAAC+CGG 0.441931 3_2:+1410662 None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG 0.441934 3_2:-1410668 Msa0390480:CDS
CCAGACGATCGTTGTGGTTG+GGG 0.450228 3_2:-1407262 Msa0390480:CDS
AATATGGAAATGCCAATGTC+TGG 0.452706 3_2:-1407950 Msa0390480:CDS
CGTGGTGCTGGATATACGTT+TGG 0.454119 3_2:-1407229 Msa0390480:CDS
ATTATTATGATATCATATCA+TGG 0.459606 3_2:-1406479 Msa0390480:three_prime_UTR
TTTCACTGTTTAAGTGGTGG+AGG 0.459844 3_2:-1406777 Msa0390480:three_prime_UTR
GGTATATCTCCACGTGGTGC+TGG 0.461540 3_2:-1407241 Msa0390480:CDS
GAGGAGTTTCACTGTTTAAG+TGG 0.462531 3_2:-1406783 Msa0390480:three_prime_UTR
ACCAATAGAATCGACACAAT+TGG 0.466980 3_2:-1406678 Msa0390480:three_prime_UTR
CGTTCAACCGGTGAAGTGTC+CGG 0.468440 3_2:-1410681 Msa0390480:CDS
CCGCGCCTTGGATCGCATAC+AGG 0.472606 3_2:-1407743 Msa0390480:CDS
GATCAGTCGGCGACGGTCGC+CGG 0.478360 3_2:+1410863 None:intergenic
TGAGGAATGGAACGTTCAAC+CGG 0.483631 3_2:-1410693 Msa0390480:CDS
GGTGTCTTTCGTGTAGTGTC+AGG 0.485525 3_2:+1406889 None:intergenic
CATATCATGGGTAGGGTTGG+TGG 0.492457 3_2:-1406466 Msa0390480:three_prime_UTR
CTCTTTATGGGAGATTATGT+AGG 0.493968 3_2:-1410572 Msa0390480:intron
ACCCAGACGATCGTTGTGGT+TGG 0.495708 3_2:-1407264 Msa0390480:CDS
GTGTCAGGCTCAATTTGCCT+TGG 0.498966 3_2:+1406904 None:intergenic
AGCGCCTTCACATCCGCCTC+CGG 0.505019 3_2:+1410743 None:intergenic
GGGCGATTCTTGTTGAGGAA+TGG 0.507448 3_2:-1410706 Msa0390480:CDS
GGTAAAGAATTTCCAGACAT+TGG 0.508637 3_2:+1407938 None:intergenic
ATTCTCTCCAATTTCCAGAA+TGG 0.510452 3_2:+1406960 None:intergenic
GAAAGAAGTAACTACATTCA+GGG 0.511259 3_2:+1406838 None:intergenic
TCGGATTGGTGGAAATGCTC+CGG 0.512157 3_2:-1410606 Msa0390480:CDS
TCAATATAGGTTCCGCATGA+AGG 0.513509 3_2:-1407313 Msa0390480:intron
AGGTAAATAATCAAACAAAT+CGG 0.517054 3_2:+1407917 None:intergenic
ATAAAGAGATAATTAGTATC+CGG 0.517202 3_2:+1410587 None:intergenic
GCTCAGTTCAATCACACAAA+TGG 0.518477 3_2:-1407193 Msa0390480:CDS
CCAAATTACTGCTACCGATG+TGG 0.523948 3_2:-1406994 Msa0390480:CDS
ACTGGATAATATCCGCGCCT+TGG 0.529586 3_2:-1407755 Msa0390480:CDS
CAAATTACTGCTACCGATGT+GGG 0.532060 3_2:-1406993 Msa0390480:CDS
TTCTTCAGATCCGATGAGAT+CGG 0.533938 3_2:+1410839 None:intergenic
GTGCAAGCCTTTACCGGAGG+CGG 0.534349 3_2:-1410756 Msa0390480:CDS
ATGATATCATATCATGGGTA+GGG 0.536950 3_2:-1406473 Msa0390480:three_prime_UTR
TTGTGAATGGTTACAAGTGC+AGG 0.539078 3_2:-1406530 Msa0390480:three_prime_UTR
TCGGCAGATCGAGAGTCTCA+TGG 0.543255 3_2:-1410780 Msa0390480:CDS
CTCACCATCTTTGGATACAC+TGG 0.543454 3_2:-1407773 Msa0390480:CDS
AGCGAGGGCGATTCTTGTTG+AGG 0.545800 3_2:-1410711 Msa0390480:CDS
TTATCCAGTGTATCCAAAGA+TGG 0.549296 3_2:+1407769 None:intergenic
TATGATATCATATCATGGGT+AGG 0.555001 3_2:-1406474 Msa0390480:three_prime_UTR
GAGTTTCACTGTTTAAGTGG+TGG 0.555690 3_2:-1406780 Msa0390480:three_prime_UTR
TTTACCGGAGGCGGATGTGA+AGG 0.556113 3_2:-1410747 Msa0390480:CDS
TTCACTGTTTAAGTGGTGGA+GGG 0.556999 3_2:-1406776 Msa0390480:three_prime_UTR
CGATCCAGATCCGCGTGTGA+CGG 0.559405 3_2:+1410800 None:intergenic
CAGATCCGCGTGTGACGGCA+TGG 0.561837 3_2:+1410805 None:intergenic
TGCTGGATATACGTTTGGAC+AGG 0.564091 3_2:-1407224 Msa0390480:CDS
ACCGTAACCGGACACTTCAC+CGG 0.565155 3_2:+1410674 None:intergenic
TATCATATCATGGGTAGGGT+TGG 0.565574 3_2:-1406469 Msa0390480:three_prime_UTR
GGCGCTATGCGATCAAGCGA+GGG 0.566727 3_2:-1410726 Msa0390480:CDS
TAGAGCTCATCAGCTTGTGA+TGG 0.570025 3_2:-1407155 Msa0390480:CDS
CGACTGATCTCCGATCTCAT+CGG 0.572969 3_2:-1410849 Msa0390480:five_prime_UTR
CGTCGGAGAAGATGAAGATG+AGG 0.573607 3_2:+1410891 None:intergenic
TTATTATGATATCATATCAT+GGG 0.573643 3_2:-1406478 Msa0390480:three_prime_UTR
AGATAGAATTACAATTCTCA+GGG 0.575342 3_2:-1408641 Msa0390480:CDS
CATAAATTTATGCAGATCGT+GGG 0.576093 3_2:-1408717 Msa0390480:intron
GACGGTCGCCGGAGATTCGT+CGG 0.576191 3_2:+1410874 None:intergenic
GACCAATGTGTGATCTCTTG+TGG 0.576863 3_2:-1407291 Msa0390480:CDS
CGTCACACGCGGATCTGGAT+CGG 0.578779 3_2:-1410799 Msa0390480:CDS
CCCAACCACAACGATCGTCT+GGG 0.580244 3_2:+1407263 None:intergenic
GCTCATCAGCTTGTGATGGA+AGG 0.582864 3_2:-1407151 Msa0390480:CDS
TGCAGTTTGATCCAGCTCCA+AGG 0.585413 3_2:-1406921 Msa0390480:CDS
AACCTCCTGTATGCGATCCA+AGG 0.586881 3_2:+1407738 None:intergenic
TTCAAACCTGACTCTCAATG+AGG 0.590959 3_2:+1407886 None:intergenic
AGGCGCTATGCGATCAAGCG+AGG 0.591197 3_2:-1410727 Msa0390480:CDS
AGGAGGAAGCGGCAATAACA+TGG 0.596625 3_2:-1406638 Msa0390480:three_prime_UTR
TTCAACCATGCCGTCACACG+CGG 0.601853 3_2:-1410810 Msa0390480:exon
CGCCTTGGATCGCATACAGG+AGG 0.602261 3_2:-1407740 Msa0390480:intron
TCAAACCTGACTCTCAATGA+GGG 0.610004 3_2:+1407887 None:intergenic
TTGTGATGGAAGGATACAAT+TGG 0.613571 3_2:-1407141 Msa0390480:CDS
CTCTCAATGAGGGCAGTCAG+AGG 0.620691 3_2:+1407897 None:intergenic
GGAAGGATACAATTGGTGCC+AGG 0.622019 3_2:-1407134 Msa0390480:intron
CGATGAGATCGGAGATCAGT+CGG 0.627267 3_2:+1410850 None:intergenic
GTCGGAGAAGATGAAGATGA+GGG 0.631325 3_2:+1410892 None:intergenic
TGACACTACACGAAAGACAC+CGG 0.642789 3_2:-1406887 Msa0390480:CDS
GATCGGAGATCAGTCGGCGA+CGG 0.650816 3_2:+1410856 None:intergenic
TTCACAATCTTAAATGAACA+TGG 0.653210 3_2:+1406546 None:intergenic
TCACACATTGGTCCTTCATG+CGG 0.659593 3_2:+1407301 None:intergenic
CCTGTATGCGATCCAAGGCG+CGG 0.673253 3_2:+1407743 None:intergenic
GGAGTGCAAGCCTTTACCGG+AGG 0.673342 3_2:-1410759 Msa0390480:CDS
TGGCAGCCATATTCCCACAT+CGG 0.677796 3_2:+1406980 None:intergenic
AGATCGTGGGTACTATTCAG+TGG 0.679198 3_2:-1408704 Msa0390480:CDS
TCTGACCCAGACGATCGTTG+TGG 0.702404 3_2:-1407268 Msa0390480:CDS
AACGTATATCCAGCACCACG+TGG 0.705317 3_2:+1407232 None:intergenic
GATAGAATTACAATTCTCAG+GGG 0.726280 3_2:-1408640 Msa0390480:CDS
ACAATCTTAAATGAACATGG+TGG 0.729587 3_2:+1406549 None:intergenic
GACCACAAGAGATCACACAT+TGG 0.731997 3_2:+1407289 None:intergenic
GGTTGGGGTATATCTCCACG+TGG 0.804235 3_2:-1407247 Msa0390480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGTTAATTTGATTTATTTA+GGG - chr3_2:1406979-1406998 Msa0390480:CDS 15.0%
!!! TTTATATAGTGTTTTGTTTT+CGG - chr3_2:1407033-1407052 Msa0390480:intron 15.0%
!!! TAAGGTTTGATTTTTTATTT+TGG - chr3_2:1407213-1407232 Msa0390480:CDS 15.0%
!!! ATAGTTATTTCAGTTTTATA+AGG - chr3_2:1407329-1407348 Msa0390480:intron 15.0%
!! TATTGAGTTTGATATATTAT+TGG - chr3_2:1407364-1407383 Msa0390480:intron 15.0%
!!! TTTGTAGTTTAATTTTGATA+CGG - chr3_2:1407700-1407719 Msa0390480:intron 15.0%
!! CTATAAATTATAACACAATA+CGG + chr3_2:1407970-1407989 None:intergenic 15.0%
!! TTGAATATAAGAAACATAAA+AGG - chr3_2:1409432-1409451 Msa0390480:intron 15.0%
!!! ACATAAAAGGAATTTTATTT+TGG - chr3_2:1409445-1409464 Msa0390480:intron 15.0%
!!! TATTAAATTGCTATTATAAC+TGG - chr3_2:1409770-1409789 Msa0390480:intron 15.0%
!! TAGTATCAAATAATTTACAT+TGG + chr3_2:1409806-1409825 None:intergenic 15.0%
!! AGAAATGAAATATTAAATGA+GGG + chr3_2:1410078-1410097 None:intergenic 15.0%
!! ATTATTATGATATCATATCA+TGG - chr3_2:1410999-1411018 Msa0390480:five_prime_UTR 15.0%
!! TTATTATGATATCATATCAT+GGG - chr3_2:1411000-1411019 Msa0390480:five_prime_UTR 15.0%
!! TAATGGTTTCTTTATATTAC+TGG + chr3_2:1406512-1406531 None:intergenic 20.0%
!! ATAAAGAGATAATTAGTATC+CGG + chr3_2:1406894-1406913 None:intergenic 20.0%
!! GATACTAATTATCTCTTTAT+GGG - chr3_2:1406894-1406913 Msa0390480:CDS 20.0%
!! CTCAAGAAAACAAAAAAATT+AGG + chr3_2:1406961-1406980 None:intergenic 20.0%
!!! CTAATTTTTTTGTTTTCTTG+AGG - chr3_2:1406959-1406978 Msa0390480:CDS 20.0%
!!! GAGGTTAATTTGATTTATTT+AGG - chr3_2:1406978-1406997 Msa0390480:CDS 20.0%
!!! TTTATTTAGGGTTTGATTAT+TGG - chr3_2:1406991-1407010 Msa0390480:CDS 20.0%
!!! TAATTGCTTCTTTTATATGT+TGG - chr3_2:1407444-1407463 Msa0390480:intron 20.0%
!!! TTATGATGTTTTCTGAAAAA+TGG - chr3_2:1407491-1407510 Msa0390480:intron 20.0%
!!! TCTAAAATCAAACATATGAT+TGG + chr3_2:1407759-1407778 None:intergenic 20.0%
!!! ACTTGTCTTTTTATTTTTCT+TGG - chr3_2:1408084-1408103 Msa0390480:intron 20.0%
!!! TTCATGTATGATAGAATTTT+TGG - chr3_2:1408146-1408165 Msa0390480:intron 20.0%
!!! TGGATATACATATCATTTTA+TGG - chr3_2:1408177-1408196 Msa0390480:intron 20.0%
!!! GGATATACATATCATTTTAT+GGG - chr3_2:1408178-1408197 Msa0390480:intron 20.0%
!!! TGTTACTGTAATATATTTTG+AGG - chr3_2:1408564-1408583 Msa0390480:intron 20.0%
!!! GTTACTGTAATATATTTTGA+GGG - chr3_2:1408565-1408584 Msa0390480:intron 20.0%
!! AAATTTATGCCAGAATTATT+AGG + chr3_2:1408750-1408769 None:intergenic 20.0%
!! AGGTAAATAATCAAACAAAT+CGG + chr3_2:1409564-1409583 None:intergenic 20.0%
!!! TGATACTAAGAACATTTTTA+TGG - chr3_2:1409818-1409837 Msa0390480:intron 20.0%
!! CAGAAATGAAATATTAAATG+AGG + chr3_2:1410079-1410098 None:intergenic 20.0%
!!! ACTATTTTGCTTTTCAATAT+AGG - chr3_2:1410152-1410171 Msa0390480:intron 20.0%
!!! GTCTTTTTTATTACTCTTTT+AGG - chr3_2:1410432-1410451 Msa0390480:intron 20.0%
!! TGAAGTTACAAAAAATAATC+CGG + chr3_2:1410613-1410632 None:intergenic 20.0%
!!! ACAACATAATTCTTTCTTTT+TGG - chr3_2:1410734-1410753 Msa0390480:CDS 20.0%
!!! TGGTATTGTATATTTTTGAT+AGG - chr3_2:1410820-1410839 Msa0390480:exon 20.0%
!!! TATTGTATATTTTTGATAGG+AGG - chr3_2:1410823-1410842 Msa0390480:exon 20.0%
! GGATACTAATTATCTCTTTA+TGG - chr3_2:1406893-1406912 Msa0390480:CDS 25.0%
!!! GTTTGATTATTGGTTTTATG+AGG - chr3_2:1407001-1407020 Msa0390480:CDS 25.0%
!!! TTTTCGGTTTTGTTGATTTT+TGG - chr3_2:1407049-1407068 Msa0390480:intron 25.0%
! AGCTGAATTAGATGTATATA+GGG - chr3_2:1407079-1407098 Msa0390480:intron 25.0%
!! TGTATATAGGGTTTGAATTT+TGG - chr3_2:1407091-1407110 Msa0390480:intron 25.0%
!!! ATTTTGGTTTTGGTATTTCT+TGG - chr3_2:1407107-1407126 Msa0390480:intron 25.0%
!! AGGTGAATTTTATGTAGATA+AGG - chr3_2:1407195-1407214 Msa0390480:CDS 25.0%
! TTGTTCTTGAGATGAATTAT+TGG - chr3_2:1407242-1407261 Msa0390480:CDS 25.0%
!! TGTATTTGAGTCTATTTTGT+TGG - chr3_2:1407273-1407292 Msa0390480:CDS 25.0%
!!! TTATATGTTGGAGTCTTTTT+TGG - chr3_2:1407456-1407475 Msa0390480:intron 25.0%
! GTTGTATTTGTTTGACTAAT+TGG - chr3_2:1407533-1407552 Msa0390480:intron 25.0%
! ACAATTCTCCTTTAAACAAA+TGG + chr3_2:1408056-1408075 None:intergenic 25.0%
!!! GTATGATAGAATTTTTGGTT+TGG - chr3_2:1408151-1408170 Msa0390480:intron 25.0%
!!! TAGAATTTTTGGTTTGGAAT+TGG - chr3_2:1408157-1408176 Msa0390480:intron 25.0%
! TAAGTTTGAGCTCAAAAAAT+TGG - chr3_2:1408274-1408293 Msa0390480:intron 25.0%
!!! TCAAAGTGTCTATATTTTGA+CGG - chr3_2:1408452-1408471 Msa0390480:intron 25.0%
! TACTAGATTCAGATGTAATA+AGG - chr3_2:1408627-1408646 Msa0390480:CDS 25.0%
! AATTAGATTATTTGCATCTG+TGG - chr3_2:1408709-1408728 Msa0390480:intron 25.0%
! ATTAGATTATTTGCATCTGT+GGG - chr3_2:1408710-1408729 Msa0390480:intron 25.0%
! GAATTATTAGGAAATTGTAG+TGG + chr3_2:1408738-1408757 None:intergenic 25.0%
! CTACAATTTCCTAATAATTC+TGG - chr3_2:1408738-1408757 Msa0390480:intron 25.0%
! AGATAGAATTACAATTCTCA+GGG - chr3_2:1408837-1408856 Msa0390480:intron 25.0%
! CTTGCTTAAAGTTTAAGAAT+AGG - chr3_2:1408975-1408994 Msa0390480:intron 25.0%
! TAAAACACAAACACAATGAA+TGG + chr3_2:1409026-1409045 None:intergenic 25.0%
! TATATCTTTCTCAGTATTCT+GGG - chr3_2:1409159-1409178 Msa0390480:intron 25.0%
!!! AGTGTTTTAGTGAGTTTTTA+AGG - chr3_2:1409195-1409214 Msa0390480:intron 25.0%
!!! ATTTGTTTTCTTACCATTTC+AGG - chr3_2:1409477-1409496 Msa0390480:intron 25.0%
!!! ATAAAAAAGGTGTTAGACAA+TGG + chr3_2:1409657-1409676 None:intergenic 25.0%
! CAGAAAATCTGCAATAAAAA+AGG + chr3_2:1409670-1409689 None:intergenic 25.0%
! ATGAATCAATCTAAGTGTTA+CGG + chr3_2:1410378-1410397 None:intergenic 25.0%
!! ACTTAGATTGATTCATTTCA+AGG - chr3_2:1410382-1410401 Msa0390480:intron 25.0%
!! GATTTGTCTTTAAGAAAAAG+AGG - chr3_2:1410676-1410695 Msa0390480:CDS 25.0%
! TTCACAATCTTAAATGAACA+TGG + chr3_2:1410935-1410954 None:intergenic 25.0%
!! TGTTCATTTAAGATTGTGAA+TGG - chr3_2:1410935-1410954 Msa0390480:five_prime_UTR 25.0%
! ATGATCTGATTGAGCTTTTT+CGG - chr3_2:1406853-1406872 Msa0390480:three_prime_UTR 30.0%
GAGCTGAATTAGATGTATAT+AGG - chr3_2:1407078-1407097 Msa0390480:intron 30.0%
!!! TAGGGTTTGAATTTTGGTTT+TGG - chr3_2:1407097-1407116 Msa0390480:intron 30.0%
TTGGTATTTCTTGGTTTATG+AGG - chr3_2:1407116-1407135 Msa0390480:intron 30.0%
AGGTGAATTTGATGCATATA+GGG - chr3_2:1407136-1407155 Msa0390480:CDS 30.0%
!!! TGGAAATTGCTGTTTTTAGT+TGG - chr3_2:1407511-1407530 Msa0390480:intron 30.0%
TAATCCATATAACACTGTCA+GGG + chr3_2:1407855-1407874 None:intergenic 30.0%
TTAATCCATATAACACTGTC+AGG + chr3_2:1407856-1407875 None:intergenic 30.0%
!!! ATCCTCATTTTTTCAGATCT+TGG - chr3_2:1408017-1408036 Msa0390480:intron 30.0%
AACCAAGATCTGAAAAAATG+AGG + chr3_2:1408022-1408041 None:intergenic 30.0%
!! GTTATGTGCCATTTGTTTAA+AGG - chr3_2:1408045-1408064 Msa0390480:intron 30.0%
TGTGCAACACAATTAAGAAA+CGG - chr3_2:1408244-1408263 Msa0390480:intron 30.0%
!!! ATGTTTTAAGTTTGTGTGAG+TGG - chr3_2:1408335-1408354 Msa0390480:intron 30.0%
! CTTGTATGAGAGGATTTTAT+AGG - chr3_2:1408398-1408417 Msa0390480:intron 30.0%
AGTGACATATGTTTGTATTG+AGG - chr3_2:1408528-1408547 Msa0390480:intron 30.0%
!! CTGTAATATATTTTGAGGGA+AGG - chr3_2:1408569-1408588 Msa0390480:intron 30.0%
CTTAACAACTTCAATATCTG+AGG - chr3_2:1408600-1408619 Msa0390480:intron 30.0%
CATAAATTTATGCAGATCGT+GGG - chr3_2:1408761-1408780 Msa0390480:intron 30.0%
GAGATAGAATTACAATTCTC+AGG - chr3_2:1408836-1408855 Msa0390480:intron 30.0%
GATAGAATTACAATTCTCAG+GGG - chr3_2:1408838-1408857 Msa0390480:intron 30.0%
CTTACACTTGAGTAATTTGA+CGG + chr3_2:1408876-1408895 None:intergenic 30.0%
AACACAATGAATGGAGTAAT+TGG + chr3_2:1409017-1409036 None:intergenic 30.0%
TTTACATTGAGATAGATGGA+TGG + chr3_2:1409065-1409084 None:intergenic 30.0%
GAACTTTACATTGAGATAGA+TGG + chr3_2:1409069-1409088 None:intergenic 30.0%
TCTCAATGTAAAGTTCAATG+CGG - chr3_2:1409073-1409092 Msa0390480:intron 30.0%
! GATTGCAAAAAATCAAGTTG+CGG + chr3_2:1409116-1409135 None:intergenic 30.0%
CTATATCTTTCTCAGTATTC+TGG - chr3_2:1409158-1409177 Msa0390480:intron 30.0%
TACAAGTGAAACATCATATC+TGG - chr3_2:1409285-1409304 Msa0390480:intron 30.0%
!! TTTTCTTACCATTTCAGGTA+TGG - chr3_2:1409482-1409501 Msa0390480:intron 30.0%
GATGAATGCTTGAGAAAATA+TGG - chr3_2:1409512-1409531 Msa0390480:intron 30.0%
GGGAAAAAAGATCTTTAACT+TGG + chr3_2:1409854-1409873 None:intergenic 30.0%
!!! ATCTTTTTTCCCCTAAAGTA+TGG - chr3_2:1409862-1409881 Msa0390480:intron 30.0%
ACTTTGCATACCATACTTTA+GGG + chr3_2:1409875-1409894 None:intergenic 30.0%
TACTTTGCATACCATACTTT+AGG + chr3_2:1409876-1409895 None:intergenic 30.0%
! GTTGTCTGCATTTTTCTTTT+TGG - chr3_2:1409982-1410001 Msa0390480:intron 30.0%
TGAATCAATCTAAGTGTTAC+GGG + chr3_2:1410377-1410396 None:intergenic 30.0%
GAAAGAAGTAACTACATTCA+GGG + chr3_2:1410643-1410662 None:intergenic 30.0%
AGAAAGAAGTAACTACATTC+AGG + chr3_2:1410644-1410663 None:intergenic 30.0%
!! ATATTTTTGATAGGAGGAAG+CGG - chr3_2:1410829-1410848 Msa0390480:five_prime_UTR 30.0%
ACAATCTTAAATGAACATGG+TGG + chr3_2:1410932-1410951 None:intergenic 30.0%
TATGATATCATATCATGGGT+AGG - chr3_2:1411004-1411023 Msa0390480:five_prime_UTR 30.0%
ATGATATCATATCATGGGTA+GGG - chr3_2:1411005-1411024 Msa0390480:five_prime_UTR 30.0%
!!! ACGATGCGTTTTGAGAATAA+TGG + chr3_2:1406529-1406548 None:intergenic 35.0%
CTCTTTATGGGAGATTATGT+AGG - chr3_2:1406906-1406925 Msa0390480:CDS 35.0%
GAGGTGAATTTGATGCATAT+AGG - chr3_2:1407135-1407154 Msa0390480:CDS 35.0%
! TGCATATAGGGTGTGATTTT+TGG - chr3_2:1407148-1407167 Msa0390480:CDS 35.0%
!! TGGTGATGTTTGCTTTTATG+AGG - chr3_2:1407175-1407194 Msa0390480:CDS 35.0%
!!! GTTGGTTTTTGATGAGTGTT+TGG - chr3_2:1407291-1407310 Msa0390480:CDS 35.0%
!!! TTGGTGTTGTGTTCGAATTT+TGG - chr3_2:1407383-1407402 Msa0390480:intron 35.0%
!!! TGTTGGAGTCTTTTTTGGAA+AGG - chr3_2:1407461-1407480 Msa0390480:intron 35.0%
!!! GTTGGAGTCTTTTTTGGAAA+GGG - chr3_2:1407462-1407481 Msa0390480:intron 35.0%
TGATATGTAGTCAGCTAGTT+TGG - chr3_2:1407635-1407654 Msa0390480:intron 35.0%
TTTACCCTGACAGTGTTATA+TGG - chr3_2:1407848-1407867 Msa0390480:intron 35.0%
GAAATGGTCAAGATTTAGTC+AGG + chr3_2:1407942-1407961 None:intergenic 35.0%
ACACAATACGGACAAAGAAA+TGG + chr3_2:1407958-1407977 None:intergenic 35.0%
AATCATTCCAACAGAAAAGC+AGG + chr3_2:1408116-1408135 None:intergenic 35.0%
TTCTTAATTGTGTTGCACAC+CGG + chr3_2:1408243-1408262 None:intergenic 35.0%
GTGCAACACAATTAAGAAAC+GGG - chr3_2:1408245-1408264 Msa0390480:intron 35.0%
TGCAACACAATTAAGAAACG+GGG - chr3_2:1408246-1408265 Msa0390480:intron 35.0%
GAACTTGAAACTTGTATGAG+AGG - chr3_2:1408388-1408407 Msa0390480:intron 35.0%
!! TATTTTGAGGGAAGGTTATG+AGG - chr3_2:1408577-1408596 Msa0390480:intron 35.0%
! ATGTAATAAGGTGCCAACTT+TGG - chr3_2:1408639-1408658 Msa0390480:CDS 35.0%
AGAATGGTTATAGCCAAAGT+TGG + chr3_2:1408655-1408674 None:intergenic 35.0%
GCATAAATTTATGCAGATCG+TGG - chr3_2:1408760-1408779 Msa0390480:intron 35.0%
! TGTGTTTTACAACTTTCTGC+TGG - chr3_2:1409037-1409056 Msa0390480:intron 35.0%
CTCAATGTAAAGTTCAATGC+GGG - chr3_2:1409074-1409093 Msa0390480:intron 35.0%
TCAATGTAAAGTTCAATGCG+GGG - chr3_2:1409075-1409094 Msa0390480:intron 35.0%
AGAAAGAGTTGTAAAGTGTG+TGG - chr3_2:1409224-1409243 Msa0390480:intron 35.0%
TACACAATAGCACATTCACT+CGG + chr3_2:1409324-1409343 None:intergenic 35.0%
AATAACAGATTGGCATTCAC+AGG + chr3_2:1409369-1409388 None:intergenic 35.0%
TGTGAATGCCAATCTGTTAT+TGG - chr3_2:1409368-1409387 Msa0390480:intron 35.0%
! ATGCCAATCTGTTATTGGTT+TGG - chr3_2:1409373-1409392 Msa0390480:intron 35.0%
!! TGCCAATCTGTTATTGGTTT+GGG - chr3_2:1409374-1409393 Msa0390480:intron 35.0%
ATCCCAAACCAATAACAGAT+TGG + chr3_2:1409379-1409398 None:intergenic 35.0%
! GGTTTGGGATGATATGAAAT+TGG - chr3_2:1409389-1409408 Msa0390480:intron 35.0%
AATATGGAAATGCCAATGTC+TGG - chr3_2:1409528-1409547 Msa0390480:intron 35.0%
GGTAAAGAATTTCCAGACAT+TGG + chr3_2:1409543-1409562 None:intergenic 35.0%
! TTGCAGATTTTCTGTTTGCA+TGG - chr3_2:1409676-1409695 Msa0390480:intron 35.0%
TTATCCAGTGTATCCAAAGA+TGG + chr3_2:1409712-1409731 None:intergenic 35.0%
CTTTGCATACCATACTTTAG+GGG + chr3_2:1409874-1409893 None:intergenic 35.0%
GAAACATGAAACATCCAAAG+AGG + chr3_2:1410056-1410075 None:intergenic 35.0%
! TTGTGATGGAAGGATACAAT+TGG - chr3_2:1410337-1410356 Msa0390480:intron 35.0%
!! ACTCTTTTAGGAGAAGAATG+TGG - chr3_2:1410444-1410463 Msa0390480:intron 35.0%
ATTCTCTCCAATTTCCAGAA+TGG + chr3_2:1410521-1410540 None:intergenic 35.0%
TCTGGAAATTGGAGAGAATA+TGG - chr3_2:1410522-1410541 Msa0390480:intron 35.0%
ACCAATAGAATCGACACAAT+TGG - chr3_2:1410800-1410819 Msa0390480:CDS 35.0%
!! ACCAATTGTGTCGATTCTAT+TGG + chr3_2:1410804-1410823 None:intergenic 35.0%
TGCTTAGAAACTGCTGAAAT+AGG - chr3_2:1411042-1411061 Msa0390480:five_prime_UTR 35.0%
GCTTAGAAACTGCTGAAATA+GGG - chr3_2:1411043-1411062 Msa0390480:five_prime_UTR 35.0%
AGAAGATGAAGATGAGGGTT+TGG + chr3_2:1406584-1406603 None:intergenic 40.0%
TTCTTCAGATCCGATGAGAT+CGG + chr3_2:1406642-1406661 None:intergenic 40.0%
ATATCACCACAAACCGTAAC+CGG + chr3_2:1406819-1406838 None:intergenic 40.0%
ACGGTTTGTGGTGATATTCA+TGG - chr3_2:1406822-1406841 Msa0390480:three_prime_UTR 40.0%
!!! CTGATTGAGCTTTTTCGGAT+TGG - chr3_2:1406858-1406877 Msa0390480:exon 40.0%
!!! ATTGAGCTTTTTCGGATTGG+TGG - chr3_2:1406861-1406880 Msa0390480:exon 40.0%
!!! AGGGTGTGATTTTTGGTTCT+TGG - chr3_2:1407155-1407174 Msa0390480:CDS 40.0%
ATTCCAACAGAAAAGCAGGA+GGG + chr3_2:1408112-1408131 None:intergenic 40.0%
CCAGTAAGCGAATCAAAGAA+TGG + chr3_2:1408671-1408690 None:intergenic 40.0%
! CCATTCTTTGATTCGCTTAC+TGG - chr3_2:1408668-1408687 Msa0390480:CDS 40.0%
! AGTGGAGACTGTTTCACTTT+TGG - chr3_2:1408792-1408811 Msa0390480:intron 40.0%
CAATGTAAAGTTCAATGCGG+GGG - chr3_2:1409076-1409095 Msa0390480:intron 40.0%
AATGTAAAGTTCAATGCGGG+GGG - chr3_2:1409077-1409096 Msa0390480:intron 40.0%
GTTGTAAAGTGTGTGGTGAA+TGG - chr3_2:1409231-1409250 Msa0390480:intron 40.0%
!! AATGGATAGCGGTTTTACCA+AGG - chr3_2:1409249-1409268 Msa0390480:intron 40.0%
!! ATGGATAGCGGTTTTACCAA+GGG - chr3_2:1409250-1409269 Msa0390480:intron 40.0%
TTGTGTAGACGTGAATTACG+TGG - chr3_2:1409337-1409356 Msa0390480:intron 40.0%
CGTAGAAACCATACCTGAAA+TGG + chr3_2:1409493-1409512 None:intergenic 40.0%
TCAAACCTGACTCTCAATGA+GGG + chr3_2:1409594-1409613 None:intergenic 40.0%
TTCAAACCTGACTCTCAATG+AGG + chr3_2:1409595-1409614 None:intergenic 40.0%
! CAGATTTTCTGTTTGCATGG+AGG - chr3_2:1409679-1409698 Msa0390480:intron 40.0%
! AACCTCTACGACATGGTTTT+AGG + chr3_2:1410107-1410126 None:intergenic 40.0%
AAGCAAAATAGTCACTTGCC+AGG + chr3_2:1410144-1410163 None:intergenic 40.0%
TCAATATAGGTTCCGCATGA+AGG - chr3_2:1410165-1410184 Msa0390480:intron 40.0%
GCTCAGTTCAATCACACAAA+TGG - chr3_2:1410285-1410304 Msa0390480:intron 40.0%
CAAATTACTGCTACCGATGT+GGG - chr3_2:1410485-1410504 Msa0390480:intron 40.0%
GAGGAGTTTCACTGTTTAAG+TGG - chr3_2:1410695-1410714 Msa0390480:CDS 40.0%
GAGTTTCACTGTTTAAGTGG+TGG - chr3_2:1410698-1410717 Msa0390480:CDS 40.0%
TTTCACTGTTTAAGTGGTGG+AGG - chr3_2:1410701-1410720 Msa0390480:CDS 40.0%
! TTCACTGTTTAAGTGGTGGA+GGG - chr3_2:1410702-1410721 Msa0390480:CDS 40.0%
TTGTGAATGGTTACAAGTGC+AGG - chr3_2:1410948-1410967 Msa0390480:five_prime_UTR 40.0%
TATCATATCATGGGTAGGGT+TGG - chr3_2:1411009-1411028 Msa0390480:five_prime_UTR 40.0%
TTCAGCAGTTTCTAAGCAAC+AGG + chr3_2:1411040-1411059 None:intergenic 40.0%
GTCGGAGAAGATGAAGATGA+GGG + chr3_2:1406589-1406608 None:intergenic 45.0%
TGAGGAATGGAACGTTCAAC+CGG - chr3_2:1406785-1406804 Msa0390480:three_prime_UTR 45.0%
TTCCAACAGAAAAGCAGGAG+GGG + chr3_2:1408111-1408130 None:intergenic 45.0%
CATTCCAACAGAAAAGCAGG+AGG + chr3_2:1408113-1408132 None:intergenic 45.0%
TGCAGTTACTATCACACCGT+AGG - chr3_2:1408203-1408222 Msa0390480:intron 45.0%
GCAGTTACTATCACACCGTA+GGG - chr3_2:1408204-1408223 Msa0390480:intron 45.0%
CAGTTACTATCACACCGTAG+GGG - chr3_2:1408205-1408224 Msa0390480:intron 45.0%
AGTTACTATCACACCGTAGG+GGG - chr3_2:1408206-1408225 Msa0390480:intron 45.0%
AGATCGTGGGTACTATTCAG+TGG - chr3_2:1408774-1408793 Msa0390480:intron 45.0%
!! GGAGACTGTTTCACTTTTGG+TGG - chr3_2:1408795-1408814 Msa0390480:intron 45.0%
ATGTAAAGTTCAATGCGGGG+GGG - chr3_2:1409078-1409097 Msa0390480:intron 45.0%
CAGTATTCTGGGTGATGTTG+TGG - chr3_2:1409170-1409189 Msa0390480:intron 45.0%
AGTGTGTGGTGAATGGATAG+CGG - chr3_2:1409238-1409257 Msa0390480:intron 45.0%
TGTTTCACTTGTACGCTCCA+TGG + chr3_2:1409278-1409297 None:intergenic 45.0%
CTCACCATCTTTGGATACAC+TGG - chr3_2:1409705-1409724 Msa0390480:intron 45.0%
TGCCTAAAACCATGTCGTAG+AGG - chr3_2:1410102-1410121 Msa0390480:intron 45.0%
GGTTGACTGGATATATTGCC+TGG - chr3_2:1410123-1410142 Msa0390480:intron 45.0%
TCACACATTGGTCCTTCATG+CGG + chr3_2:1410180-1410199 None:intergenic 45.0%
GACCAATGTGTGATCTCTTG+TGG - chr3_2:1410187-1410206 Msa0390480:intron 45.0%
GACCACAAGAGATCACACAT+TGG + chr3_2:1410192-1410211 None:intergenic 45.0%
TGCTGGATATACGTTTGGAC+AGG - chr3_2:1410254-1410273 Msa0390480:intron 45.0%
TAGAGCTCATCAGCTTGTGA+TGG - chr3_2:1410323-1410342 Msa0390480:intron 45.0%
CCACATCGGTAGCAGTAATT+TGG + chr3_2:1410487-1410506 None:intergenic 45.0%
CCAAATTACTGCTACCGATG+TGG - chr3_2:1410484-1410503 Msa0390480:intron 45.0%
! ATGGCTGCCATTCTGGAAAT+TGG - chr3_2:1410511-1410530 Msa0390480:intron 45.0%
TGACACTACACGAAAGACAC+CGG - chr3_2:1410591-1410610 Msa0390480:CDS 45.0%
! CTGCTGCTGTCTGTCTTATT+TGG - chr3_2:1410770-1410789 Msa0390480:CDS 45.0%
CGTCGGAGAAGATGAAGATG+AGG + chr3_2:1406590-1406609 None:intergenic 50.0%
CATCTTCTCCGACGAATCTC+CGG - chr3_2:1406596-1406615 Msa0390480:three_prime_UTR 50.0%
CGATGAGATCGGAGATCAGT+CGG + chr3_2:1406631-1406650 None:intergenic 50.0%
CGACTGATCTCCGATCTCAT+CGG - chr3_2:1406629-1406648 Msa0390480:three_prime_UTR 50.0%
CATGGAGTGCAAGCCTTTAC+CGG - chr3_2:1406716-1406735 Msa0390480:three_prime_UTR 50.0%
GGGCGATTCTTGTTGAGGAA+TGG - chr3_2:1406772-1406791 Msa0390480:three_prime_UTR 50.0%
AAGTGTCCGGTTACGGTTTG+TGG - chr3_2:1406810-1406829 Msa0390480:three_prime_UTR 50.0%
!! TCGGATTGGTGGAAATGCTC+CGG - chr3_2:1406872-1406891 Msa0390480:exon 50.0%
TCCAACAGAAAAGCAGGAGG+GGG + chr3_2:1408110-1408129 None:intergenic 50.0%
TATCACACCGTAGGGGGTTA+GGG - chr3_2:1408212-1408231 Msa0390480:intron 50.0%
TGGAGGTCTCTCACCATCTT+TGG - chr3_2:1409696-1409715 Msa0390480:intron 50.0%
ACTGGATAATATCCGCGCCT+TGG - chr3_2:1409723-1409742 Msa0390480:intron 50.0%
AACCTCCTGTATGCGATCCA+AGG + chr3_2:1409743-1409762 None:intergenic 50.0%
GAGGCATAGAGCACATGGTA+AGG + chr3_2:1410037-1410056 None:intergenic 50.0%
! CCAAAGAGGCATAGAGCACA+TGG + chr3_2:1410042-1410061 None:intergenic 50.0%
CCATGTGCTCTATGCCTCTT+TGG - chr3_2:1410039-1410058 Msa0390480:intron 50.0%
ACCATGTCGTAGAGGTTGAC+TGG - chr3_2:1410110-1410129 Msa0390480:intron 50.0%
TCCAGTCAACCTCTACGACA+TGG + chr3_2:1410114-1410133 None:intergenic 50.0%
AACGTATATCCAGCACCACG+TGG + chr3_2:1410249-1410268 None:intergenic 50.0%
! CGTGGTGCTGGATATACGTT+TGG - chr3_2:1410249-1410268 Msa0390480:intron 50.0%
! GCTCATCAGCTTGTGATGGA+AGG - chr3_2:1410327-1410346 Msa0390480:intron 50.0%
! GGAAGGATACAATTGGTGCC+AGG - chr3_2:1410344-1410363 Msa0390480:intron 50.0%
CTGCTACCGATGTGGGAATA+TGG - chr3_2:1410492-1410511 Msa0390480:intron 50.0%
TGGCAGCCATATTCCCACAT+CGG + chr3_2:1410501-1410520 None:intergenic 50.0%
TGGGAATATGGCTGCCATTC+TGG - chr3_2:1410504-1410523 Msa0390480:intron 50.0%
TGCAGTTTGATCCAGCTCCA+AGG - chr3_2:1410557-1410576 Msa0390480:intron 50.0%
GTGTCAGGCTCAATTTGCCT+TGG + chr3_2:1410577-1410596 None:intergenic 50.0%
GGTGTCTTTCGTGTAGTGTC+AGG + chr3_2:1410592-1410611 None:intergenic 50.0%
AGGAGGAAGCGGCAATAACA+TGG - chr3_2:1410840-1410859 Msa0390480:five_prime_UTR 50.0%
CATATCATGGGTAGGGTTGG+TGG - chr3_2:1411012-1411031 Msa0390480:five_prime_UTR 50.0%
TTCAACCATGCCGTCACACG+CGG - chr3_2:1406668-1406687 Msa0390480:three_prime_UTR 55.0%
TCGGCAGATCGAGAGTCTCA+TGG - chr3_2:1406698-1406717 Msa0390480:three_prime_UTR 55.0%
TTCACATCCGCCTCCGGTAA+AGG + chr3_2:1406732-1406751 None:intergenic 55.0%
TTTACCGGAGGCGGATGTGA+AGG - chr3_2:1406731-1406750 Msa0390480:three_prime_UTR 55.0%
AGCGAGGGCGATTCTTGTTG+AGG - chr3_2:1406767-1406786 Msa0390480:three_prime_UTR 55.0%
! CGTTCAACCGGTGAAGTGTC+CGG - chr3_2:1406797-1406816 Msa0390480:three_prime_UTR 55.0%
! ACCGGTGAAGTGTCCGGTTA+CGG - chr3_2:1406803-1406822 Msa0390480:three_prime_UTR 55.0%
ACCGTAACCGGACACTTCAC+CGG + chr3_2:1406807-1406826 None:intergenic 55.0%
CTATCACACCGTAGGGGGTT+AGG - chr3_2:1408211-1408230 Msa0390480:intron 55.0%
AAGTTCAATGCGGGGGGGTT+CGG - chr3_2:1409083-1409102 Msa0390480:intron 55.0%
!!! CGGTTTTACCAAGGGCACCA+TGG - chr3_2:1409258-1409277 Msa0390480:intron 55.0%
CTCTCAATGAGGGCAGTCAG+AGG + chr3_2:1409584-1409603 None:intergenic 55.0%
GACTGCCCTCATTGAGAGTC+AGG - chr3_2:1409586-1409605 Msa0390480:intron 55.0%
TCTGACCCAGACGATCGTTG+TGG - chr3_2:1410210-1410229 Msa0390480:intron 55.0%
ACCCAGACGATCGTTGTGGT+TGG - chr3_2:1410214-1410233 Msa0390480:intron 55.0%
CCCAACCACAACGATCGTCT+GGG + chr3_2:1410218-1410237 None:intergenic 55.0%
CCCAGACGATCGTTGTGGTT+GGG - chr3_2:1410215-1410234 Msa0390480:intron 55.0%
CCAGACGATCGTTGTGGTTG+GGG - chr3_2:1410216-1410235 Msa0390480:intron 55.0%
GGTTGGGGTATATCTCCACG+TGG - chr3_2:1410231-1410250 Msa0390480:intron 55.0%
GGTATATCTCCACGTGGTGC+TGG - chr3_2:1410237-1410256 Msa0390480:intron 55.0%
AGTGTTACGGGTCAGTCACC+TGG + chr3_2:1410365-1410384 None:intergenic 55.0%
GGCTCAATTTGCCTTGGAGC+TGG + chr3_2:1410571-1410590 None:intergenic 55.0%
GATCGGAGATCAGTCGGCGA+CGG + chr3_2:1406625-1406644 None:intergenic 60.0%
CGATCCAGATCCGCGTGTGA+CGG + chr3_2:1406681-1406700 None:intergenic 60.0%
CGTCACACGCGGATCTGGAT+CGG - chr3_2:1406679-1406698 Msa0390480:three_prime_UTR 60.0%
GGAGTGCAAGCCTTTACCGG+AGG - chr3_2:1406719-1406738 Msa0390480:three_prime_UTR 60.0%
GTGCAAGCCTTTACCGGAGG+CGG - chr3_2:1406722-1406741 Msa0390480:three_prime_UTR 60.0%
AGGCGCTATGCGATCAAGCG+AGG - chr3_2:1406751-1406770 Msa0390480:three_prime_UTR 60.0%
GGCGCTATGCGATCAAGCGA+GGG - chr3_2:1406752-1406771 Msa0390480:three_prime_UTR 60.0%
!! GCCCCCTCCTGCTTTTCTGT+TGG - chr3_2:1408106-1408125 Msa0390480:intron 60.0%
TGTACGCTCCATGGTGCCCT+TGG + chr3_2:1409269-1409288 None:intergenic 60.0%
CCTGTATGCGATCCAAGGCG+CGG + chr3_2:1409738-1409757 None:intergenic 60.0%
CGCCTTGGATCGCATACAGG+AGG - chr3_2:1409738-1409757 Msa0390480:intron 60.0%
CCCCAACCACAACGATCGTC+TGG + chr3_2:1410219-1410238 None:intergenic 60.0%
GACGGTCGCCGGAGATTCGT+CGG + chr3_2:1406607-1406626 None:intergenic 65.0%
CAGATCCGCGTGTGACGGCA+TGG + chr3_2:1406676-1406695 None:intergenic 65.0%
CATGCCGTCACACGCGGATC+TGG - chr3_2:1406674-1406693 Msa0390480:three_prime_UTR 65.0%
AGCGCCTTCACATCCGCCTC+CGG + chr3_2:1406738-1406757 None:intergenic 65.0%
CACACCGTAGGGGGTTAGGG+TGG - chr3_2:1408215-1408234 Msa0390480:intron 65.0%
GGCACCACCCTAACCCCCTA+CGG + chr3_2:1408222-1408241 None:intergenic 65.0%
GTAGGGGGTTAGGGTGGTGC+CGG - chr3_2:1408221-1408240 Msa0390480:intron 65.0%
! CAATGCGGGGGGGTTCGGTT+AGG - chr3_2:1409088-1409107 Msa0390480:intron 65.0%
CCGCGCCTTGGATCGCATAC+AGG - chr3_2:1409735-1409754 Msa0390480:intron 65.0%
GATCAGTCGGCGACGGTCGC+CGG + chr3_2:1406618-1406637 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 1406428 1411072 1406428 ID=Msa0390480;Name=Msa0390480
chr3_2 mRNA 1406428 1411072 1406428 ID=Msa0390480-mRNA-1;Parent=Msa0390480;Name=Msa0390480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=247|1|1|1|1|1|6|445|306
chr3_2 exon 1406428 1407046 1406428 ID=Msa0390480-mRNA-1:exon:437;Parent=Msa0390480-mRNA-1
chr3_2 exon 1407135 1407326 1407135 ID=Msa0390480-mRNA-1:exon:436;Parent=Msa0390480-mRNA-1
chr3_2 exon 1407741 1407818 1407741 ID=Msa0390480-mRNA-1:exon:435;Parent=Msa0390480-mRNA-1
chr3_2 exon 1407893 1408001 1407893 ID=Msa0390480-mRNA-1:exon:434;Parent=Msa0390480-mRNA-1
chr3_2 exon 1408610 1408724 1408610 ID=Msa0390480-mRNA-1:exon:433;Parent=Msa0390480-mRNA-1
chr3_2 exon 1410573 1411072 1410573 ID=Msa0390480-mRNA-1:exon:432;Parent=Msa0390480-mRNA-1
chr3_2 five_prime_UTR 1410826 1411072 1410826 ID=Msa0390480-mRNA-1:five_prime_utr;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1410573 1410825 1410573 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1408610 1408724 1408610 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1407893 1408001 1407893 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1407741 1407818 1407741 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1407135 1407326 1407135 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 CDS 1406873 1407046 1406873 ID=Msa0390480-mRNA-1:cds;Parent=Msa0390480-mRNA-1
chr3_2 three_prime_UTR 1406428 1406872 1406428 ID=Msa0390480-mRNA-1:three_prime_utr;Parent=Msa0390480-mRNA-1
Gene Sequence

>Msa0390480

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTCATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGGGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA

Protein sequence

>Msa0390480

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*