Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417500 | XP_003601093.1 | 100.000 | 35 | 0 | 0 | 1 | 35 | 1 | 35 | 2.63e-14 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417500 | G7J3L0 | 100.000 | 35 | 0 | 0 | 1 | 35 | 1 | 35 | 1.26e-14 | 79.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0417500 | 0.869859 | 2.257427e-66 | -8.615850e-47 |
| Msa0035150 | Msa0417500 | 0.805508 | 1.290243e-49 | -8.615850e-47 |
| Msa0037700 | Msa0417500 | 0.807979 | 3.879432e-50 | -8.615850e-47 |
| Msa0086650 | Msa0417500 | 0.812120 | 4.975061e-51 | -8.615850e-47 |
| Msa0122590 | Msa0417500 | 0.805022 | 1.631425e-49 | -8.615850e-47 |
| Msa0133130 | Msa0417500 | 0.813492 | 2.490879e-51 | -8.615850e-47 |
| Msa0157290 | Msa0417500 | 0.870838 | 1.077993e-66 | -8.615850e-47 |
| Msa0178930 | Msa0417500 | 0.801029 | 1.091719e-48 | -8.615850e-47 |
| Msa0178960 | Msa0417500 | 0.831361 | 1.743689e-55 | -8.615850e-47 |
| Msa0197230 | Msa0417500 | 0.810787 | 9.686875e-51 | -8.615850e-47 |
| Msa0205510 | Msa0417500 | 0.810077 | 1.378911e-50 | -8.615850e-47 |
| Msa0215320 | Msa0417500 | -0.827866 | 1.234660e-54 | -8.615850e-47 |
| Msa0220740 | Msa0417500 | 0.817203 | 3.724521e-52 | -8.615850e-47 |
| Msa0226890 | Msa0417500 | 0.831010 | 2.127280e-55 | -8.615850e-47 |
| Msa0379640 | Msa0417500 | 0.800731 | 1.256070e-48 | -8.615850e-47 |
| Msa0417500 | Msa0424320 | 0.801531 | 8.615612e-49 | -8.615850e-47 |
| Msa0417500 | Msa0431690 | 0.812491 | 4.128510e-51 | -8.615850e-47 |
| Msa0417500 | Msa0466390 | 0.823069 | 1.688883e-53 | -8.615850e-47 |
| Msa0417500 | Msa0471800 | 0.802151 | 6.427670e-49 | -8.615850e-47 |
| Msa0417500 | Msa0480980 | 0.810277 | 1.248931e-50 | -8.615850e-47 |
| Msa0417500 | Msa0487630 | 0.800538 | 1.375068e-48 | -8.615850e-47 |
| Msa0417500 | Msa0489100 | 0.811281 | 7.570918e-51 | -8.615850e-47 |
| Msa0417500 | Msa0512900 | 0.803892 | 2.806701e-49 | -8.615850e-47 |
| Msa0417500 | Msa0523940 | 0.821532 | 3.840041e-53 | -8.615850e-47 |
| Msa0417500 | Msa0581760 | 0.803735 | 3.024873e-49 | -8.615850e-47 |
| Msa0417500 | Msa0597330 | 0.806055 | 9.905584e-50 | -8.615850e-47 |
| Msa0417500 | Msa0599890 | 0.806050 | 9.927836e-50 | -8.615850e-47 |
| Msa0417500 | Msa0601850 | 0.802755 | 4.826313e-49 | -8.615850e-47 |
| Msa0417500 | Msa0657970 | 0.822029 | 2.947823e-53 | -8.615850e-47 |
| Msa0417500 | Msa0701010 | 0.802979 | 4.338837e-49 | -8.615850e-47 |
| Msa0417500 | Msa0743720 | 0.824859 | 6.423597e-54 | -8.615850e-47 |
| Msa0417500 | Msa0749290 | 0.834243 | 3.354158e-56 | -8.615850e-47 |
| Msa0417500 | Msa0771720 | 0.804979 | 1.665819e-49 | -8.615850e-47 |
| Msa0417500 | Msa0777230 | 0.826102 | 3.260480e-54 | -8.615850e-47 |
| Msa0417500 | Msa0798430 | 0.800319 | 1.523801e-48 | -8.615850e-47 |
| Msa0417500 | Msa0824680 | 0.814419 | 1.555379e-51 | -8.615850e-47 |
| Msa0417500 | Msa0828940 | 0.804993 | 1.654308e-49 | -8.615850e-47 |
| Msa0417500 | Msa0832370 | 0.826448 | 2.698395e-54 | -8.615850e-47 |
| Msa0417500 | Msa0857640 | 0.813184 | 2.910646e-51 | -8.615850e-47 |
| Msa0417500 | Msa0863870 | 0.806255 | 8.991009e-50 | -8.615850e-47 |
| Msa0417500 | Msa0880140 | 0.866360 | 3.019029e-65 | -8.615850e-47 |
| Msa0417500 | Msa0896220 | 0.811986 | 5.319730e-51 | -8.615850e-47 |
| Msa0417500 | Msa0907070 | 0.804563 | 2.034570e-49 | -8.615850e-47 |
| Msa0417500 | Msa0908050 | 0.800878 | 1.172327e-48 | -8.615850e-47 |
| Msa0417500 | Msa0922410 | 0.805522 | 1.281594e-49 | -8.615850e-47 |
| Msa0417500 | Msa0933100 | 0.805369 | 1.379930e-49 | -8.615850e-47 |
| Msa0417500 | Msa1019840 | -0.803212 | 3.883265e-49 | -8.615850e-47 |
| Msa0417500 | Msa1030970 | 0.815595 | 8.529511e-52 | -8.615850e-47 |
| Msa0417500 | Msa1075220 | -0.815046 | 1.129518e-51 | -8.615850e-47 |
| Msa0417500 | Msa1082500 | 0.804782 | 1.831242e-49 | -8.615850e-47 |
| Msa0417500 | Msa1085300 | 0.816364 | 5.744068e-52 | -8.615850e-47 |
| Msa0417500 | Msa1117660 | 0.800508 | 1.394534e-48 | -8.615850e-47 |
| Msa0417500 | Msa1130270 | -0.804908 | 1.723741e-49 | -8.615850e-47 |
| Msa0417500 | Msa1137570 | 0.801175 | 1.019343e-48 | -8.615850e-47 |
| Msa0417500 | Msa1162550 | -0.820060 | 8.371550e-53 | -8.615850e-47 |
| Msa0417500 | Msa1179460 | 0.831005 | 2.132220e-55 | -8.615850e-47 |
| Msa0417500 | Msa1186060 | 0.803290 | 3.741493e-49 | -8.615850e-47 |
| Msa0417500 | Msa1190400 | 0.801044 | 1.083881e-48 | -8.615850e-47 |
| Msa0417500 | Msa1199220 | 0.809887 | 1.515433e-50 | -8.615850e-47 |
| Msa0417500 | Msa1205130 | 0.806728 | 7.145575e-50 | -8.615850e-47 |
| Msa0417500 | Msa1228210 | 0.808811 | 2.578068e-50 | -8.615850e-47 |
| Msa0417500 | Msa1238930 | 0.824747 | 6.827892e-54 | -8.615850e-47 |
| Msa0417500 | Msa1239530 | 0.811968 | 5.369482e-51 | -8.615850e-47 |
| Msa0417500 | Msa1244250 | 0.824390 | 8.286001e-54 | -8.615850e-47 |
| Msa0417500 | Msa1247250 | 0.805372 | 1.378185e-49 | -8.615850e-47 |
| Msa0417500 | Msa1253020 | 0.805559 | 1.258832e-49 | -8.615850e-47 |
| Msa0417500 | Msa1277280 | 0.822199 | 2.691096e-53 | -8.615850e-47 |
| Msa0417500 | Msa1283860 | 0.821558 | 3.787753e-53 | -8.615850e-47 |
| Msa0417500 | Msa1284680 | 0.824877 | 6.362328e-54 | -8.615850e-47 |
| Msa0417500 | Msa1348950 | 0.833951 | 3.969529e-56 | -8.615850e-47 |
| Msa0417500 | Msa1359040 | 0.805414 | 1.350544e-49 | -8.615850e-47 |
| Msa0417500 | Msa1367080 | 0.802829 | 4.658405e-49 | -8.615850e-47 |
| Msa0417500 | Msa1374550 | 0.812183 | 4.818195e-51 | -8.615850e-47 |
| Msa0417500 | Msa1411700 | 0.805487 | 1.303850e-49 | -8.615850e-47 |
| Msa0417500 | Msa1423880 | 0.802644 | 5.088002e-49 | -8.615850e-47 |
| Msa0417500 | Msa1451620 | -0.809088 | 2.248806e-50 | -8.615850e-47 |
| Msa0417500 | Msa1464940 | 0.808810 | 2.579518e-50 | -8.615850e-47 |
| Msa0238890 | Msa0417500 | 0.801604 | 8.327043e-49 | -8.615850e-47 |
| Msa0243100 | Msa0417500 | 0.803086 | 4.122270e-49 | -8.615850e-47 |
| Msa0243710 | Msa0417500 | 0.801473 | 8.855284e-49 | -8.615850e-47 |
| Msa0258760 | Msa0417500 | 0.809888 | 1.514505e-50 | -8.615850e-47 |
| Msa0302000 | Msa0417500 | 0.800009 | 1.762043e-48 | -8.615850e-47 |
| Msa0323610 | Msa0417500 | 0.810071 | 1.383348e-50 | -8.615850e-47 |
| Msa0344910 | Msa0417500 | 0.810301 | 1.233925e-50 | -8.615850e-47 |
| Msa0344980 | Msa0417500 | 0.814235 | 1.708670e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417500 | MtrunA17_Chr3g0115021 | 100.000 | 35 | 0 | 0 | 1 | 35 | 1 | 35 | 2.42e-18 | 79.0 |
| Msa0417500 | MtrunA17_Chr3g0115041 | 100.000 | 35 | 0 | 0 | 1 | 35 | 1 | 35 | 2.47e-18 | 79.0 |
| Msa0417500 | MtrunA17_Chr6g0469631 | 88.571 | 35 | 4 | 0 | 1 | 35 | 1 | 35 | 8.74e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTGGTGCATTCATTTAC+AGG | 0.299457 | 3_2:+64730875 | None:intergenic |
| CAGCTTATGCTTCGTTCGGC+AGG | 0.325530 | 3_2:-64728183 | Msa0417500:CDS |
| CAACAAAGCTTGTTCACAAT+TGG | 0.368652 | 3_2:-64727515 | Msa0417500:CDS |
| CAAAACTCTCATATTTCCTA+TGG | 0.401622 | 3_2:-64730826 | Msa0417500:CDS |
| TCTCATCAAGTGTGAGGGAC+AGG | 0.422618 | 3_2:-64727572 | Msa0417500:CDS |
| TGCATTCATTTACAGGGTCA+TGG | 0.467571 | 3_2:+64730882 | None:intergenic |
| GTTCTTTGTTAGGACAATGA+AGG | 0.469790 | 3_2:-64728321 | Msa0417500:intron |
| GCTGCAGCTTATGCTTCGTT+CGG | 0.496204 | 3_2:-64728187 | Msa0417500:CDS |
| TTGTTAGGACAATGAAGGGT+TGG | 0.496736 | 3_2:-64728316 | Msa0417500:intron |
| AGCTTATGCTTCGTTCGGCA+GGG | 0.509368 | 3_2:-64728182 | Msa0417500:CDS |
| AACATAAGCTGAAGCACTGA+TGG | 0.510762 | 3_2:+64728136 | None:intergenic |
| TTCTTTGTTAGGACAATGAA+GGG | 0.516183 | 3_2:-64728320 | Msa0417500:intron |
| GTTTGAAAAGAGAGTGAAGT+TGG | 0.518422 | 3_2:+64730859 | None:intergenic |
| AGAAAATCATCTTAATAATG+AGG | 0.547740 | 3_2:-64728293 | Msa0417500:intron |
| GTGTGATGCTACAAAGCCAT+AGG | 0.580247 | 3_2:+64730810 | None:intergenic |
| CTCATCAAGTGTGAGGGACA+GGG | 0.583776 | 3_2:-64727571 | Msa0417500:CDS |
| TTGAAGTCTCATCAAGTGTG+AGG | 0.612495 | 3_2:-64727578 | Msa0417500:intron |
| TGAAGTCTCATCAAGTGTGA+GGG | 0.621502 | 3_2:-64727577 | Msa0417500:intron |
| AGTTGGTGCATTCATTTACA+GGG | 0.645557 | 3_2:+64730876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTATTTGATTTTTTT+TGG | + | chr3_2:64727656-64727675 | None:intergenic | 10.0% |
| !! | AAAAAATATCTTAAAAATAC+AGG | + | chr3_2:64728862-64728881 | None:intergenic | 10.0% |
| !! | AATGAATTAATATAACTTAA+CGG | - | chr3_2:64729175-64729194 | Msa0417500:intron | 10.0% |
| !! | AATCAAATAAGAAATGATAA+TGG | - | chr3_2:64727661-64727680 | Msa0417500:intron | 15.0% |
| !! | AATCTTTCACTAATAATAAA+CGG | + | chr3_2:64727766-64727785 | None:intergenic | 15.0% |
| !! | TTTATTATTAGTGAAAGATT+AGG | - | chr3_2:64727766-64727785 | Msa0417500:intron | 15.0% |
| !!! | TCATATTTTTTTATCTCTTA+GGG | - | chr3_2:64727967-64727986 | Msa0417500:intron | 15.0% |
| !! | GAATATAATACTAATATATG+AGG | - | chr3_2:64728441-64728460 | Msa0417500:intron | 15.0% |
| !! | ATATAGGTTAAAATTACAAT+AGG | + | chr3_2:64728647-64728666 | None:intergenic | 15.0% |
| !! | GGAATAAAAAAAATTAAATG+GGG | + | chr3_2:64729051-64729070 | None:intergenic | 15.0% |
| !! | GGGAATAAAAAAAATTAAAT+GGG | + | chr3_2:64729052-64729071 | None:intergenic | 15.0% |
| !! | AGGGAATAAAAAAAATTAAA+TGG | + | chr3_2:64729053-64729072 | None:intergenic | 15.0% |
| !! | TGCTCATATAAAAAAAATAA+GGG | + | chr3_2:64729072-64729091 | None:intergenic | 15.0% |
| !! | TTGCTCATATAAAAAAAATA+AGG | + | chr3_2:64729073-64729092 | None:intergenic | 15.0% |
| !! | ATGAATTAATATAACTTAAC+GGG | - | chr3_2:64729176-64729195 | Msa0417500:intron | 15.0% |
| !! | ACAAATGTAATTTCAATTAA+AGG | - | chr3_2:64729314-64729333 | Msa0417500:intron | 15.0% |
| !!! | AATTAAAGGTTAGATTTTTT+TGG | - | chr3_2:64729328-64729347 | Msa0417500:intron | 15.0% |
| !!! | ATTAAAGGTTAGATTTTTTT+GGG | - | chr3_2:64729329-64729348 | Msa0417500:intron | 15.0% |
| !!! | AGTTTTAATTTTATTGGATT+TGG | + | chr3_2:64730716-64730735 | None:intergenic | 15.0% |
| !! | TAACAAAATTCTGTCAATTA+TGG | - | chr3_2:64727709-64727728 | Msa0417500:intron | 20.0% |
| !!! | GTCATATTTTTTTATCTCTT+AGG | - | chr3_2:64727966-64727985 | Msa0417500:intron | 20.0% |
| !! | GAATTACTTTGCAAATATTA+TGG | - | chr3_2:64728043-64728062 | Msa0417500:intron | 20.0% |
| !!! | GTTTTACAATTTCATCTATT+AGG | - | chr3_2:64728171-64728190 | Msa0417500:CDS | 20.0% |
| !! | TAAACAAAAATAATGAAGTG+AGG | + | chr3_2:64728236-64728255 | None:intergenic | 20.0% |
| !! | TAATATATGAGGTAAAATTG+TGG | - | chr3_2:64728452-64728471 | Msa0417500:intron | 20.0% |
| !! | AATATATGAGGTAAAATTGT+GGG | - | chr3_2:64728453-64728472 | Msa0417500:intron | 20.0% |
| !!! | AACTTTAAAGAACTCATATT+GGG | + | chr3_2:64728480-64728499 | None:intergenic | 20.0% |
| !! | ATGAGTAAATTGAATCAAAA+TGG | - | chr3_2:64728517-64728536 | Msa0417500:intron | 20.0% |
| !! | TGAATTAATATAACTTAACG+GGG | - | chr3_2:64729177-64729196 | Msa0417500:intron | 20.0% |
| !! | TTGCCAAAAATTAAAAACAA+GGG | + | chr3_2:64729278-64729297 | None:intergenic | 20.0% |
| !! | TTTGCCAAAAATTAAAAACA+AGG | + | chr3_2:64729279-64729298 | None:intergenic | 20.0% |
| !!! | TTTTGGCAAATTAAATCTAA+AGG | - | chr3_2:64729289-64729308 | Msa0417500:intron | 20.0% |
| !! | TTTGGCAAATTAAATCTAAA+GGG | - | chr3_2:64729290-64729309 | Msa0417500:intron | 20.0% |
| !!! | TTAAAGGTTAGATTTTTTTG+GGG | - | chr3_2:64729330-64729349 | Msa0417500:intron | 20.0% |
| !!! | AAGGGAAGAAATTTTTTTTT+GGG | + | chr3_2:64729599-64729618 | None:intergenic | 20.0% |
| !!! | AAAGGGAAGAAATTTTTTTT+TGG | + | chr3_2:64729600-64729619 | None:intergenic | 20.0% |
| !!! | CTAATAATCAGTTGTTTTAA+AGG | - | chr3_2:64729855-64729874 | Msa0417500:intron | 20.0% |
| !!! | TTTTTTTCTTGTTCTTTGTT+AGG | - | chr3_2:64730066-64730085 | Msa0417500:intron | 20.0% |
| !! | AGAAAATCATCTTAATAATG+AGG | - | chr3_2:64730104-64730123 | Msa0417500:intron | 20.0% |
| !! | TTTACATTGTATATAGCTTA+TGG | - | chr3_2:64730498-64730517 | Msa0417500:intron | 20.0% |
| !!! | GAAGTGAGTTTTAATTTTAT+TGG | + | chr3_2:64730722-64730741 | None:intergenic | 20.0% |
| ! | CAACTTATGCTTAAACATTA+CGG | - | chr3_2:64727804-64727823 | Msa0417500:intron | 25.0% |
| ! | TACTTTGCAAATATTATGGT+TGG | - | chr3_2:64728047-64728066 | Msa0417500:intron | 25.0% |
| ! | ACTTTGCAAATATTATGGTT+GGG | - | chr3_2:64728048-64728067 | Msa0417500:intron | 25.0% |
| !! | GAACTTTAAAGAACTCATAT+TGG | + | chr3_2:64728481-64728500 | None:intergenic | 25.0% |
| ! | TAAATTGAATCAAAATGGTG+TGG | - | chr3_2:64728522-64728541 | Msa0417500:intron | 25.0% |
| !!! | TCTATAATTGGTTATTTTGC+GGG | + | chr3_2:64728558-64728577 | None:intergenic | 25.0% |
| !!! | CTCTATAATTGGTTATTTTG+CGG | + | chr3_2:64728559-64728578 | None:intergenic | 25.0% |
| ! | TAAAATTACAATAGGCAAGT+GGG | + | chr3_2:64728639-64728658 | None:intergenic | 25.0% |
| ! | TTAAAATTACAATAGGCAAG+TGG | + | chr3_2:64728640-64728659 | None:intergenic | 25.0% |
| ! | AGACAATAATACCATAAAAG+TGG | + | chr3_2:64728697-64728716 | None:intergenic | 25.0% |
| !! | TTTTTATGAAACATTTCCTG+TGG | - | chr3_2:64728984-64729003 | Msa0417500:intron | 25.0% |
| ! | ATAAATGATACGTAAAGAGA+AGG | + | chr3_2:64729148-64729167 | None:intergenic | 25.0% |
| ! | CTCTTTACGTATCATTTATT+TGG | - | chr3_2:64729149-64729168 | Msa0417500:intron | 25.0% |
| !!! | AGGGAAGAAATTTTTTTTTG+GGG | + | chr3_2:64729598-64729617 | None:intergenic | 25.0% |
| ! | AATTGAGACAATTATGTCAT+TGG | - | chr3_2:64729891-64729910 | Msa0417500:intron | 25.0% |
| !! | AATTTTCTCATAGACGTAAT+TGG | - | chr3_2:64730345-64730364 | Msa0417500:intron | 25.0% |
| ! | CACTAAAACATATTTGGTTA+TGG | + | chr3_2:64730676-64730695 | None:intergenic | 25.0% |
| ! | TTGTGACACTAAAACATATT+TGG | + | chr3_2:64730682-64730701 | None:intergenic | 25.0% |
| !!! | AAGTTTTGAGCTATTAAAGA+AGG | - | chr3_2:64730747-64730766 | Msa0417500:intron | 25.0% |
| !!! | GTATTTTGATCCAATGTTTT+TGG | + | chr3_2:64730863-64730882 | None:intergenic | 25.0% |
| !!! | GGAAATATGAGAGTTTTGAA+AGG | + | chr3_2:64727569-64727588 | None:intergenic | 30.0% |
| CAAAACTCTCATATTTCCTA+TGG | - | chr3_2:64727571-64727590 | Msa0417500:CDS | 30.0% | |
| CTTTGCAAATATTATGGTTG+GGG | - | chr3_2:64728049-64728068 | Msa0417500:intron | 30.0% | |
| TCAAAATAAGCGAACACAAT+TGG | + | chr3_2:64728125-64728144 | None:intergenic | 30.0% | |
| CCAATTGTGAACTCTATAAT+TGG | + | chr3_2:64728570-64728589 | None:intergenic | 30.0% | |
| CCAATTATAGAGTTCACAAT+TGG | - | chr3_2:64728567-64728586 | Msa0417500:intron | 30.0% | |
| ATAGAGTTCACAATTGGATT+TGG | - | chr3_2:64728573-64728592 | Msa0417500:intron | 30.0% | |
| AAAATTACAATAGGCAAGTG+GGG | + | chr3_2:64728638-64728657 | None:intergenic | 30.0% | |
| AGACCTTCATAAAATGAAGT+GGG | + | chr3_2:64729217-64729236 | None:intergenic | 30.0% | |
| TAGACCTTCATAAAATGAAG+TGG | + | chr3_2:64729218-64729237 | None:intergenic | 30.0% | |
| !!! | TGGCCCTTGTTTTTAATTTT+TGG | - | chr3_2:64729272-64729291 | Msa0417500:intron | 30.0% |
| ACTAACAAAGTCTACATTCA+GGG | + | chr3_2:64729403-64729422 | None:intergenic | 30.0% | |
| ACTAACAAAGTTTGCATTCA+GGG | + | chr3_2:64729435-64729454 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | - | chr3_2:64729523-64729542 | Msa0417500:intron | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | - | chr3_2:64729524-64729543 | Msa0417500:intron | 30.0% | |
| !!! | GGGAAGAAATTTTTTTTTGG+GGG | + | chr3_2:64729597-64729616 | None:intergenic | 30.0% |
| TTGCATATGATTTCAATCCA+TGG | + | chr3_2:64729710-64729729 | None:intergenic | 30.0% | |
| ! | TCAGTTTTTCCTTCTCTTTT+TGG | - | chr3_2:64729812-64729831 | Msa0417500:intron | 30.0% |
| ! | CAGTTTTTCCTTCTCTTTTT+GGG | - | chr3_2:64729813-64729832 | Msa0417500:intron | 30.0% |
| GTAAATTACCCAAAAAGAGA+AGG | + | chr3_2:64729824-64729843 | None:intergenic | 30.0% | |
| ! | GAAGAAATGAAGGTATAGAT+TGG | - | chr3_2:64729917-64729936 | Msa0417500:intron | 30.0% |
| ! | TCTATTCACATCGTCAATTT+TGG | - | chr3_2:64729978-64729997 | Msa0417500:intron | 30.0% |
| ! | CTATTCACATCGTCAATTTT+GGG | - | chr3_2:64729979-64729998 | Msa0417500:intron | 30.0% |
| CAAGCTTATAGCTTATTTGA+AGG | - | chr3_2:64730004-64730023 | Msa0417500:intron | 30.0% | |
| TTCTTTGTTAGGACAATGAA+GGG | - | chr3_2:64730077-64730096 | Msa0417500:intron | 30.0% | |
| ATCATCTTAATAATGAGGTC+TGG | - | chr3_2:64730109-64730128 | Msa0417500:intron | 30.0% | |
| !!! | TTCAGCTTGTTCTTGTTTTT+TGG | - | chr3_2:64730153-64730172 | Msa0417500:intron | 30.0% |
| !!! | TTTGTGGTTTTGTTTTGTGT+TGG | - | chr3_2:64730305-64730324 | Msa0417500:intron | 30.0% |
| GATTGTAAGCTCTTGAATTA+TGG | - | chr3_2:64730448-64730467 | Msa0417500:intron | 30.0% | |
| ATTGTGTCAGTAAACAGATT+TGG | + | chr3_2:64730548-64730567 | None:intergenic | 30.0% | |
| TTAATAGCTCAAAACTTGAG+TGG | + | chr3_2:64730744-64730763 | None:intergenic | 30.0% | |
| ! | GTTTTGCAGTCATAATTTCA+TGG | - | chr3_2:64730783-64730802 | Msa0417500:intron | 30.0% |
| GTTCAATTAGCCAAAAACAT+TGG | - | chr3_2:64730850-64730869 | Msa0417500:CDS | 30.0% | |
| ! | AGTTGGTGCATTCATTTACA+GGG | + | chr3_2:64727524-64727543 | None:intergenic | 35.0% |
| !! | AAGTTGGTGCATTCATTTAC+AGG | + | chr3_2:64727525-64727544 | None:intergenic | 35.0% |
| GTTTGAAAAGAGAGTGAAGT+TGG | + | chr3_2:64727541-64727560 | None:intergenic | 35.0% | |
| !!! | ATGAGAGTTTTGAAAGGAGA+TGG | + | chr3_2:64727563-64727582 | None:intergenic | 35.0% |
| TTGCAACATCTTCATCTTGT+CGG | - | chr3_2:64727610-64727629 | Msa0417500:intron | 35.0% | |
| ATAACATCTTAGGGTATGCA+TGG | + | chr3_2:64727940-64727959 | None:intergenic | 35.0% | |
| ATGCATACCCTAAGATGTTA+TGG | - | chr3_2:64727939-64727958 | Msa0417500:intron | 35.0% | |
| GACTTCACCATAACATCTTA+GGG | + | chr3_2:64727949-64727968 | None:intergenic | 35.0% | |
| TGACTTCACCATAACATCTT+AGG | + | chr3_2:64727950-64727969 | None:intergenic | 35.0% | |
| ATGTGTGTGTGTGGATATAT+AGG | + | chr3_2:64728663-64728682 | None:intergenic | 35.0% | |
| !! | GCAATGTGATTCCACTTTTA+TGG | - | chr3_2:64728683-64728702 | Msa0417500:intron | 35.0% |
| AAATGACATGTGATTGACGT+TGG | - | chr3_2:64728941-64728960 | Msa0417500:intron | 35.0% | |
| AAATTAAATGGGGTTGCCAT+GGG | + | chr3_2:64729041-64729060 | None:intergenic | 35.0% | |
| AAAATTAAATGGGGTTGCCA+TGG | + | chr3_2:64729042-64729061 | None:intergenic | 35.0% | |
| ! | AGACCCACTTCATTTTATGA+AGG | - | chr3_2:64729211-64729230 | Msa0417500:intron | 35.0% |
| GACTAACAAAGTCTACATTC+AGG | + | chr3_2:64729404-64729423 | None:intergenic | 35.0% | |
| GACTAACAAAGTTTGCATTC+AGG | + | chr3_2:64729436-64729455 | None:intergenic | 35.0% | |
| ACTAACAGAGTCTACATTCA+GGG | + | chr3_2:64729467-64729486 | None:intergenic | 35.0% | |
| ATGAAGAGTTTCTCGTGAAA+GGG | + | chr3_2:64729617-64729636 | None:intergenic | 35.0% | |
| AAGAAAGCAAGAGAATGAGA+GGG | + | chr3_2:64729642-64729661 | None:intergenic | 35.0% | |
| TGGCAAACACAAGAAAAAGA+GGG | + | chr3_2:64729676-64729695 | None:intergenic | 35.0% | |
| TGAGACAATTATGTCATTGG+AGG | - | chr3_2:64729894-64729913 | Msa0417500:intron | 35.0% | |
| GAGACAATTATGTCATTGGA+GGG | - | chr3_2:64729895-64729914 | Msa0417500:intron | 35.0% | |
| ! | TGAAGGTATAGATTGGTTCT+TGG | - | chr3_2:64729924-64729943 | Msa0417500:intron | 35.0% |
| GTTCTTTGTTAGGACAATGA+AGG | - | chr3_2:64730076-64730095 | Msa0417500:intron | 35.0% | |
| !!! | TTCAGCAGTGTAGTTTTTTG+TGG | - | chr3_2:64730289-64730308 | Msa0417500:intron | 35.0% |
| AAACTCAACCCTTTGCTTAA+AGG | - | chr3_2:64730570-64730589 | Msa0417500:intron | 35.0% | |
| ! | AGCTATTAAAGAAGGTGTGA+AGG | - | chr3_2:64730755-64730774 | Msa0417500:intron | 35.0% |
| ! | CAACAAAGCTTGTTCACAAT+TGG | - | chr3_2:64730882-64730901 | Msa0417500:CDS | 35.0% |
| TGCATTCATTTACAGGGTCA+TGG | + | chr3_2:64727518-64727537 | None:intergenic | 40.0% | |
| CGTCAAACATAGTCATAGGT+CGG | + | chr3_2:64727886-64727905 | None:intergenic | 40.0% | |
| CTCTCGTCAAACATAGTCAT+AGG | + | chr3_2:64727890-64727909 | None:intergenic | 40.0% | |
| ACGAGAGAGAGAGAGAAATA+TGG | - | chr3_2:64727903-64727922 | Msa0417500:intron | 40.0% | |
| CGAGAGAGAGAGAGAAATAT+GGG | - | chr3_2:64727904-64727923 | Msa0417500:intron | 40.0% | |
| GAGAGAGAGAGAGAAATATG+GGG | - | chr3_2:64727905-64727924 | Msa0417500:intron | 40.0% | |
| AGAGAGAGAGAGAAATATGG+GGG | - | chr3_2:64727906-64727925 | Msa0417500:intron | 40.0% | |
| !! | ATTTTTAATTGTCCGCCAGC+TGG | - | chr3_2:64728008-64728027 | Msa0417500:intron | 40.0% |
| ! | ACTGTCATGTTCTAAACGCA+CGG | + | chr3_2:64728093-64728112 | None:intergenic | 40.0% |
| GAGTTCACAATTGGATTTGG+AGG | - | chr3_2:64728576-64728595 | Msa0417500:intron | 40.0% | |
| ! | GTAACTAGCACCTTTTCACT+TGG | - | chr3_2:64729243-64729262 | Msa0417500:intron | 40.0% |
| ! | ACCTTTTCACTTGGACACAA+TGG | - | chr3_2:64729252-64729271 | Msa0417500:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | - | chr3_2:64729357-64729376 | Msa0417500:intron | 40.0% |
| GACTAACAGAGTCTACATTC+AGG | + | chr3_2:64729468-64729487 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3_2:64729357-64729376 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3_2:64729356-64729375 | None:intergenic | 40.0% |
| CATGAAGAGTTTCTCGTGAA+AGG | + | chr3_2:64729618-64729637 | None:intergenic | 40.0% | |
| GAAGAAAGCAAGAGAATGAG+AGG | + | chr3_2:64729643-64729662 | None:intergenic | 40.0% | |
| AGAAAAAGAGGGAACAGAGA+GGG | + | chr3_2:64729665-64729684 | None:intergenic | 40.0% | |
| AAGAAAAAGAGGGAACAGAG+AGG | + | chr3_2:64729666-64729685 | None:intergenic | 40.0% | |
| GTGGCAAACACAAGAAAAAG+AGG | + | chr3_2:64729677-64729696 | None:intergenic | 40.0% | |
| AATCCATGGAATGTGATGAG+TGG | + | chr3_2:64729696-64729715 | None:intergenic | 40.0% | |
| TCATTGGAGGGAAGAAATGA+AGG | - | chr3_2:64729907-64729926 | Msa0417500:intron | 40.0% | |
| TCTTGGTCATTGTCTTAGCA+TGG | - | chr3_2:64729941-64729960 | Msa0417500:intron | 40.0% | |
| TTGTTAGGACAATGAAGGGT+TGG | - | chr3_2:64730081-64730100 | Msa0417500:intron | 40.0% | |
| TTGAGTTCAACTTGCAGAGA+AGG | - | chr3_2:64730177-64730196 | Msa0417500:intron | 40.0% | |
| !! | AACATAAGCTGAAGCACTGA+TGG | + | chr3_2:64730264-64730283 | None:intergenic | 40.0% |
| CATCACTGCCTTTAAGCAAA+GGG | + | chr3_2:64730581-64730600 | None:intergenic | 40.0% | |
| TGACTCAACCCTTTACACAA+AGG | - | chr3_2:64730619-64730638 | Msa0417500:intron | 40.0% | |
| CATTGCTGCCTTTGTGTAAA+GGG | + | chr3_2:64730630-64730649 | None:intergenic | 40.0% | |
| TTGAAGTCTCATCAAGTGTG+AGG | - | chr3_2:64730819-64730838 | Msa0417500:intron | 40.0% | |
| TGAAGTCTCATCAAGTGTGA+GGG | - | chr3_2:64730820-64730839 | Msa0417500:intron | 40.0% | |
| !! | TACAGGGTCATGGTTTTGCT+TGG | + | chr3_2:64727508-64727527 | None:intergenic | 45.0% |
| GTGTGATGCTACAAAGCCAT+AGG | + | chr3_2:64727590-64727609 | None:intergenic | 45.0% | |
| TCCAACTCCAGTAGATTCGA+TGG | - | chr3_2:64727827-64727846 | Msa0417500:intron | 45.0% | |
| CTTGTAGCCATCGAATCTAC+TGG | + | chr3_2:64727837-64727856 | None:intergenic | 45.0% | |
| TAGTCATAGGTCGGAGTCTT+GGG | + | chr3_2:64727877-64727896 | None:intergenic | 45.0% | |
| ATAGTCATAGGTCGGAGTCT+TGG | + | chr3_2:64727878-64727897 | None:intergenic | 45.0% | |
| ATCTCTTAGGGCAACTTCAG+CGG | - | chr3_2:64727979-64727998 | Msa0417500:intron | 45.0% | |
| !! | TTCACTTTTGAACCACCAGC+TGG | + | chr3_2:64728026-64728045 | None:intergenic | 45.0% |
| !! | TTGGATTTGGAGGTGCTCTT+AGG | - | chr3_2:64728586-64728605 | Msa0417500:intron | 45.0% |
| !! | TGGATTTGGAGGTGCTCTTA+GGG | - | chr3_2:64728587-64728606 | Msa0417500:intron | 45.0% |
| ! | CTTAGGGACCGATTCAATGT+CGG | - | chr3_2:64728603-64728622 | Msa0417500:intron | 45.0% |
| ! | TTAGGGACCGATTCAATGTC+GGG | - | chr3_2:64728604-64728623 | Msa0417500:intron | 45.0% |
| CAGCTAACCCGACATTGAAT+CGG | + | chr3_2:64728614-64728633 | None:intergenic | 45.0% | |
| TCACATTGCATGTGTGTGTG+TGG | + | chr3_2:64728672-64728691 | None:intergenic | 45.0% | |
| TGACATGTGATTGACGTTGG+TGG | - | chr3_2:64728944-64728963 | Msa0417500:intron | 45.0% | |
| AACATTTCCTGTGGACACAG+TGG | - | chr3_2:64728993-64729012 | Msa0417500:intron | 45.0% | |
| ACATTTCCTGTGGACACAGT+GGG | - | chr3_2:64728994-64729013 | Msa0417500:intron | 45.0% | |
| GCCATTGTGTCCAAGTGAAA+AGG | + | chr3_2:64729256-64729275 | None:intergenic | 45.0% | |
| ACTTTAGTCCCTGAATCGGA+AGG | - | chr3_2:64729361-64729380 | Msa0417500:intron | 45.0% | |
| CTTTAGTCCCTGAATCGGAA+GGG | - | chr3_2:64729362-64729381 | Msa0417500:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | chr3_2:64729495-64729514 | Msa0417500:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | chr3_2:64729499-64729518 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | + | chr3_2:64729511-64729530 | None:intergenic | 45.0% | |
| TTGCCACTCATCACATTCCA+TGG | - | chr3_2:64729690-64729709 | Msa0417500:intron | 45.0% | |
| CCATCACTGCCTTTAAGCAA+AGG | + | chr3_2:64730582-64730601 | None:intergenic | 45.0% | |
| CCTTTGCTTAAAGGCAGTGA+TGG | - | chr3_2:64730579-64730598 | Msa0417500:intron | 45.0% | |
| CCATTGCTGCCTTTGTGTAA+AGG | + | chr3_2:64730631-64730650 | None:intergenic | 45.0% | |
| CCTTTACACAAAGGCAGCAA+TGG | - | chr3_2:64730628-64730647 | Msa0417500:intron | 45.0% | |
| GCCATCGAATCTACTGGAGT+TGG | + | chr3_2:64727831-64727850 | None:intergenic | 50.0% | |
| TTTAATTGTCCGCCAGCTGG+TGG | - | chr3_2:64728011-64728030 | Msa0417500:intron | 50.0% | |
| ! | ACTTTTGAACCACCAGCTGG+CGG | + | chr3_2:64728023-64728042 | None:intergenic | 50.0% |
| AACGCACGGTGATCATGAGT+TGG | + | chr3_2:64728079-64728098 | None:intergenic | 50.0% | |
| ! | CATGTGATTGACGTTGGTGG+TGG | - | chr3_2:64728947-64728966 | Msa0417500:intron | 50.0% |
| CATTTCCTGTGGACACAGTG+GGG | - | chr3_2:64728995-64729014 | Msa0417500:intron | 50.0% | |
| ATTTCCTGTGGACACAGTGG+GGG | - | chr3_2:64728996-64729015 | Msa0417500:intron | 50.0% | |
| GACGAATCCCTTCCGATTCA+GGG | + | chr3_2:64729372-64729391 | None:intergenic | 50.0% | |
| TGACGAATCCCTTCCGATTC+AGG | + | chr3_2:64729373-64729392 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | chr3_2:64729494-64729513 | Msa0417500:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | chr3_2:64729500-64729519 | None:intergenic | 50.0% | |
| TGACGAATCCTCTCCCATTC+AGG | - | chr3_2:64729554-64729573 | Msa0417500:intron | 50.0% | |
| GACGAATCCTCTCCCATTCA+GGG | - | chr3_2:64729555-64729574 | Msa0417500:intron | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | + | chr3_2:64729565-64729584 | None:intergenic | 50.0% | |
| GCTGCAGCTTATGCTTCGTT+CGG | - | chr3_2:64730210-64730229 | Msa0417500:intron | 50.0% | |
| AGCTTATGCTTCGTTCGGCA+GGG | - | chr3_2:64730215-64730234 | Msa0417500:intron | 50.0% | |
| TCTCATCAAGTGTGAGGGAC+AGG | - | chr3_2:64730825-64730844 | Msa0417500:CDS | 50.0% | |
| CTCATCAAGTGTGAGGGACA+GGG | - | chr3_2:64730826-64730845 | Msa0417500:CDS | 50.0% | |
| GGAGTCTTGGGTGAGGAATG+AGG | + | chr3_2:64727865-64727884 | None:intergenic | 55.0% | |
| ATAGGTCGGAGTCTTGGGTG+AGG | + | chr3_2:64727872-64727891 | None:intergenic | 55.0% | |
| TTTCCTGTGGACACAGTGGG+GGG | - | chr3_2:64728997-64729016 | Msa0417500:intron | 55.0% | |
| CAGCTTATGCTTCGTTCGGC+AGG | - | chr3_2:64730214-64730233 | Msa0417500:intron | 55.0% | |
| TTCCTGTGGACACAGTGGGG+GGG | - | chr3_2:64728998-64729017 | Msa0417500:intron | 60.0% | |
| TCCTGTGGACACAGTGGGGG+GGG | - | chr3_2:64728999-64729018 | Msa0417500:intron | 65.0% | |
| CCTGTGGACACAGTGGGGGG+GGG | - | chr3_2:64729000-64729019 | Msa0417500:intron | 70.0% | |
| CTGTGGACACAGTGGGGGGG+GGG | - | chr3_2:64729001-64729020 | Msa0417500:intron | 70.0% | |
| TGTGGACACAGTGGGGGGGG+GGG | - | chr3_2:64729002-64729021 | Msa0417500:intron | 70.0% | |
| CCCCCCCCCACTGTGTCCAC+AGG | + | chr3_2:64729003-64729022 | None:intergenic | 75.0% | |
| GTGGACACAGTGGGGGGGGG+GGG | - | chr3_2:64729003-64729022 | Msa0417500:intron | 75.0% | |
| TGGACACAGTGGGGGGGGGG+GGG | - | chr3_2:64729004-64729023 | Msa0417500:intron | 75.0% | |
| ! | GGACACAGTGGGGGGGGGGG+GGG | - | chr3_2:64729005-64729024 | Msa0417500:intron | 80.0% |
| ! | GACACAGTGGGGGGGGGGGG+GGG | - | chr3_2:64729006-64729025 | Msa0417500:intron | 80.0% |
| ! | GGGGGGGCAAGGGGGACCCA+TGG | - | chr3_2:64729022-64729041 | Msa0417500:intron | 80.0% |
| ! | AGTGGGGGGGGGGGGGGGCA+AGG | - | chr3_2:64729011-64729030 | Msa0417500:intron | 85.0% |
| ! | GTGGGGGGGGGGGGGGGCAA+GGG | - | chr3_2:64729012-64729031 | Msa0417500:intron | 85.0% |
| ! | TGGGGGGGGGGGGGGGCAAG+GGG | - | chr3_2:64729013-64729032 | Msa0417500:intron | 85.0% |
| ! | GGGGGGGGGGGGGGGCAAGG+GGG | - | chr3_2:64729014-64729033 | Msa0417500:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64727492 | 64730927 | 64727492 | ID=Msa0417500;Name=Msa0417500 |
| chr3_2 | mRNA | 64727492 | 64730927 | 64727492 | ID=Msa0417500-mRNA-1;Parent=Msa0417500;Name=Msa0417500-mRNA-1;_AED=0.49;_eAED=0.60;_QI=0|0|0|1|0|0|5|0|113 |
| chr3_2 | exon | 64730822 | 64730927 | 64730822 | ID=Msa0417500-mRNA-1:exon:14437;Parent=Msa0417500-mRNA-1 |
| chr3_2 | exon | 64728655 | 64728662 | 64728655 | ID=Msa0417500-mRNA-1:exon:14436;Parent=Msa0417500-mRNA-1 |
| chr3_2 | exon | 64728294 | 64728331 | 64728294 | ID=Msa0417500-mRNA-1:exon:14435;Parent=Msa0417500-mRNA-1 |
| chr3_2 | exon | 64728139 | 64728225 | 64728139 | ID=Msa0417500-mRNA-1:exon:14434;Parent=Msa0417500-mRNA-1 |
| chr3_2 | exon | 64727492 | 64727594 | 64727492 | ID=Msa0417500-mRNA-1:exon:14433;Parent=Msa0417500-mRNA-1 |
| chr3_2 | CDS | 64730822 | 64730927 | 64730822 | ID=Msa0417500-mRNA-1:cds;Parent=Msa0417500-mRNA-1 |
| chr3_2 | CDS | 64728655 | 64728662 | 64728655 | ID=Msa0417500-mRNA-1:cds;Parent=Msa0417500-mRNA-1 |
| chr3_2 | CDS | 64728294 | 64728331 | 64728294 | ID=Msa0417500-mRNA-1:cds;Parent=Msa0417500-mRNA-1 |
| chr3_2 | CDS | 64728139 | 64728225 | 64728139 | ID=Msa0417500-mRNA-1:cds;Parent=Msa0417500-mRNA-1 |
| chr3_2 | CDS | 64727492 | 64727594 | 64727492 | ID=Msa0417500-mRNA-1:cds;Parent=Msa0417500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
