AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003030 MtrunA17_Chr1g0193801 97.680 388 7 2 1 386 1 388 0.0 784
Msa1003030 MtrunA17_Chr7g0270891 63.683 391 85 16 1 367 1 358 1.25e-150 430
Msa1003030 MtrunA17_Chr1g0193371 48.010 402 155 13 1 384 1 366 8.39e-97 293
Msa1003030 MtrunA17_Chr4g0058631 84.091 132 21 0 1 132 1 132 3.37e-82 255
Msa1003030 MtrunA17_Chr7g0271241 84.173 139 22 0 1 139 1 139 5.97e-77 242
Msa1003030 MtrunA17_Chr3g0117091 71.523 151 40 1 1 151 1 148 2.80e-74 234
Msa1003030 MtrunA17_Chr1g0211161 69.333 150 42 1 3 152 4 149 6.77e-73 227
Msa1003030 MtrunA17_Chr8g0342521 75.610 123 30 0 1 123 1 123 4.15e-67 216
Msa1003030 MtrunA17_Chr8g0342541 55.789 190 65 4 1 177 1 184 1.35e-66 214
Msa1003030 MtrunA17_Chr2g0330041 69.173 133 41 0 1 133 1 133 4.25e-66 215
Msa1003030 MtrunA17_Chr2g0309911 69.231 130 39 1 1 130 1 129 1.20e-64 208
Msa1003030 MtrunA17_Chr3g0115821 64.394 132 47 0 1 132 1 132 2.04e-61 201
Msa1003030 MtrunA17_Chr6g0453471 63.121 141 52 0 1 141 1 141 3.30e-61 201
Msa1003030 MtrunA17_Chr4g0039971 67.188 128 42 0 1 128 2 129 4.00e-61 201
Msa1003030 MtrunA17_Chr7g0217741 62.838 148 52 1 1 145 1 148 6.64e-61 199
Msa1003030 MtrunA17_Chr8g0387421 69.492 118 36 0 1 118 1 118 6.87e-61 199
Msa1003030 MtrunA17_Chr8g0385321 66.667 129 43 0 1 129 1 129 1.55e-60 198
Msa1003030 MtrunA17_Chr4g0042671 67.969 128 41 0 1 128 1 128 1.57e-60 201
Msa1003030 MtrunA17_Chr8g0342481 75.214 117 28 1 1 116 1 117 1.88e-60 200
Msa1003030 MtrunA17_Chr4g0037141 62.879 132 49 0 1 132 1 132 3.08e-60 196
Msa1003030 MtrunA17_Chr5g0397231 73.636 110 29 0 1 110 1 110 1.48e-59 196
Msa1003030 MtrunA17_Chr3g0131121 61.832 131 50 0 1 131 1 131 2.98e-58 191
Msa1003030 MtrunA17_Chr5g0410961 62.595 131 49 0 1 131 1 131 4.64e-58 192
Msa1003030 MtrunA17_Chr5g0395281 68.333 120 38 0 12 131 12 131 6.64e-58 191
Msa1003030 MtrunA17_Chr2g0281071 65.116 129 44 1 1 128 1 129 9.57e-58 191
Msa1003030 MtrunA17_Chr6g0452271 60.606 132 52 0 1 132 1 132 2.88e-57 190
Msa1003030 MtrunA17_Chr3g0110351 65.385 130 45 0 1 130 1 130 2.90e-57 189
Msa1003030 MtrunA17_Chr1g0203411 67.797 118 38 0 1 118 1 118 3.70e-57 188
Msa1003030 MtrunA17_Chr8g0349261 66.667 132 42 2 1 130 1 132 4.13e-57 188
Msa1003030 MtrunA17_Chr5g0434571 64.615 130 46 0 1 130 37 166 4.54e-57 190
Msa1003030 MtrunA17_Chr4g0048511 64.341 129 45 1 1 128 1 129 4.78e-57 190
Msa1003030 MtrunA17_Chr3g0088461 76.147 109 26 0 9 117 19 127 6.03e-57 189
Msa1003030 MtrunA17_Chr5g0435101 62.400 125 47 0 3 127 2 126 7.07e-57 185
Msa1003030 MtrunA17_Chr2g0323411 65.625 128 44 0 1 128 1 128 9.75e-57 188
Msa1003030 MtrunA17_Chr3g0103281 64.394 132 47 0 1 132 1 132 1.13e-56 188
Msa1003030 MtrunA17_Chr4g0057031 62.595 131 49 0 1 131 1 131 1.19e-56 186
Msa1003030 MtrunA17_Chr4g0032401 72.321 112 31 0 11 122 16 127 5.91e-56 186
Msa1003030 MtrunA17_Chr7g0228891 58.865 141 58 0 1 141 1 141 8.88e-56 184
Msa1003030 MtrunA17_Chr2g0328771 74.528 106 27 0 12 117 20 125 1.33e-55 185
Msa1003030 MtrunA17_Chr7g0274581 64.407 118 42 0 1 118 1 118 3.94e-54 177
Msa1003030 MtrunA17_Chr7g0261281 51.724 174 63 2 1 174 1 153 7.79e-54 179
Msa1003030 MtrunA17_Chr4g0044421 61.905 126 48 0 1 126 1 126 2.76e-53 175
Msa1003030 MtrunA17_Chr1g0203441 69.748 119 35 1 9 127 10 127 1.33e-52 176
Msa1003030 MtrunA17_Chr1g0187761 66.102 118 40 0 1 118 1 118 5.69e-52 174
Msa1003030 MtrunA17_Chr3g0121241 62.097 124 47 0 6 129 36 159 1.37e-51 174
Msa1003030 MtrunA17_Chr1g0167661 65.517 116 40 0 1 116 1 116 2.70e-51 172
Msa1003030 MtrunA17_Chr6g0470971 68.644 118 36 1 9 125 11 128 3.64e-51 172
Msa1003030 MtrunA17_Chr5g0417821 56.250 144 63 0 12 155 7 150 6.71e-51 172
Msa1003030 MtrunA17_Chr1g0167691 64.655 116 41 0 1 116 1 116 1.01e-50 171
Msa1003030 MtrunA17_Chr4g0022931 52.083 144 69 0 5 148 6 149 2.03e-49 167
Msa1003030 MtrunA17_Chr2g0311221 65.138 109 38 0 2 110 4 112 3.79e-49 169
Msa1003030 MtrunA17_Chr2g0323351 62.931 116 43 0 1 116 1 116 4.84e-49 166
Msa1003030 MtrunA17_Chr8g0342511 79.310 87 18 0 1 87 1 87 8.23e-49 160
Msa1003030 MtrunA17_Chr8g0342531 78.652 89 19 0 1 89 1 89 1.61e-48 162
Msa1003030 MtrunA17_Chr8g0346561 60.169 118 47 0 1 118 1 118 4.80e-48 165
Msa1003030 MtrunA17_Chr4g0070611 59.829 117 47 0 1 117 1 117 5.76e-48 165
Msa1003030 MtrunA17_Chr1g0151941 46.707 167 82 4 1 166 1 161 7.95e-48 163
Msa1003030 MtrunA17_Chr4g0022901 63.964 111 40 0 5 115 6 116 8.88e-48 163
Msa1003030 MtrunA17_Chr4g0068061 63.793 116 42 0 1 116 1 116 1.13e-47 165
Msa1003030 MtrunA17_Chr4g0070641 59.829 117 47 0 1 117 1 117 2.74e-47 159
Msa1003030 MtrunA17_Chr7g0275911 58.974 117 48 0 1 117 1 117 6.83e-47 160
Msa1003030 MtrunA17_Chr1g0152011 60.833 120 46 1 1 119 1 120 2.84e-46 161
Msa1003030 MtrunA17_Chr1g0194951 62.931 116 43 0 1 116 1 116 9.57e-46 161
Msa1003030 MtrunA17_Chr4g0022911 58.621 116 47 1 1 115 1 116 1.13e-45 158
Msa1003030 MtrunA17_Chr4g0028311 61.538 117 44 1 1 116 1 117 1.15e-45 159
Msa1003030 MtrunA17_Chr3g0135311 58.333 120 49 1 1 119 1 120 4.43e-45 158
Msa1003030 MtrunA17_Chr5g0400821 59.167 120 48 1 1 119 1 120 5.66e-45 157
Msa1003030 MtrunA17_Chr8g0342461 73.333 90 23 1 1 89 1 90 1.34e-44 150
Msa1003030 MtrunA17_Chr2g0327351 63.063 111 40 1 1 110 1 111 1.55e-44 156
Msa1003030 MtrunA17_Chr7g0217221 55.932 118 52 0 1 118 1 118 2.80e-44 154
Msa1003030 MtrunA17_Chr8g0342471 72.222 90 24 1 1 89 1 90 6.27e-44 149
Msa1003030 MtrunA17_Chr4g0054391 61.818 110 41 1 1 109 1 110 9.46e-44 153
Msa1003030 MtrunA17_Chr4g0060721 57.759 116 49 0 1 116 2 117 1.23e-43 154
Msa1003030 MtrunA17_Chr7g0264641 57.265 117 49 1 1 116 1 117 3.62e-43 151
Msa1003030 MtrunA17_Chr7g0254411 54.400 125 55 1 1 123 1 125 6.62e-43 152
Msa1003030 MtrunA17_Chr7g0247131 69.663 89 27 0 44 132 10 98 1.02e-42 150
Msa1003030 MtrunA17_Chr7g0269831 56.115 139 60 1 1 138 1 139 1.80e-42 152
Msa1003030 MtrunA17_Chr3g0092401 55.932 118 52 0 1 118 2 119 1.90e-42 150
Msa1003030 MtrunA17_Chr4g0022881 61.321 106 41 0 9 114 9 114 1.93e-42 148
Msa1003030 MtrunA17_Chr3g0099131 62.617 107 40 0 12 118 41 147 4.13e-42 154
Msa1003030 MtrunA17_Chr4g0022891 44.186 172 86 2 9 170 9 180 2.16e-41 145
Msa1003030 MtrunA17_Chr1g0154031 49.020 153 66 2 12 154 76 226 2.19e-41 150
Msa1003030 MtrunA17_Chr7g0228231 55.000 120 52 1 1 118 1 120 2.43e-41 144
Msa1003030 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 3.11e-41 148
Msa1003030 MtrunA17_Chr6g0453211 57.273 110 47 0 1 110 1 110 3.92e-41 147
Msa1003030 MtrunA17_Chr8g0354661 62.264 106 40 0 12 117 37 142 6.58e-41 151
Msa1003030 MtrunA17_Chr1g0209661 51.220 123 60 0 11 133 26 148 9.18e-41 146
Msa1003030 MtrunA17_Chr6g0450101 58.333 108 45 0 11 118 13 120 1.14e-40 143
Msa1003030 MtrunA17_Chr6g0487491 54.839 124 47 2 1 115 1 124 2.28e-40 144
Msa1003030 MtrunA17_Chr4g0055981 59.813 107 43 0 9 115 52 158 3.38e-40 142
Msa1003030 MtrunA17_Chr1g0186061 57.658 111 47 0 5 115 13 123 4.61e-40 142
Msa1003030 MtrunA17_Chr1g0180391 54.887 133 53 2 12 143 19 145 4.66e-40 142
Msa1003030 MtrunA17_Chr3g0080861 57.547 106 45 0 12 117 37 142 1.74e-39 147
Msa1003030 MtrunA17_Chr8g0343831 55.455 110 49 0 10 119 6 115 2.08e-39 141
Msa1003030 MtrunA17_Chr1g0168661 55.263 114 51 0 4 117 13 126 3.59e-39 140
Msa1003030 MtrunA17_Chr4g0042611 62.500 88 33 0 1 88 1 88 1.69e-37 130
Msa1003030 MtrunA17_Chr7g0240821 60.000 100 40 0 17 116 6 105 3.00e-37 134
Msa1003030 MtrunA17_Chr2g0322521 60.377 106 42 0 12 117 29 134 3.20e-37 139
Msa1003030 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 5.03e-37 135
Msa1003030 MtrunA17_Chr5g0434831 58.095 105 44 0 12 116 7 111 5.54e-37 132
Msa1003030 MtrunA17_Chr5g0434931 52.727 110 52 0 12 121 35 144 5.90e-37 135
Msa1003030 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 7.66e-37 135
Msa1003030 MtrunA17_Chr1g0194291 52.893 121 56 1 12 132 21 140 8.17e-37 134
Msa1003030 MtrunA17_Chr1g0192411 57.009 107 46 0 11 117 11 117 3.78e-36 136
Msa1003030 MtrunA17_Chr2g0327821 34.538 249 128 4 9 254 3 219 3.17e-35 129
Msa1003030 MtrunA17_Chr8g0360111 57.426 101 43 0 12 112 25 125 3.36e-35 130
Msa1003030 MtrunA17_Chr7g0220341 53.636 110 49 1 12 119 25 134 3.73e-35 130
Msa1003030 MtrunA17_Chr5g0434841 55.238 105 47 0 12 116 20 124 4.01e-35 131
Msa1003030 MtrunA17_Chr4g0013361 48.936 141 66 4 12 149 10 147 8.28e-35 130
Msa1003030 MtrunA17_Chr2g0294811 62.500 88 33 0 1 88 1 88 8.91e-35 124
Msa1003030 MtrunA17_Chr7g0228991 54.286 105 48 0 12 116 29 133 1.28e-34 129
Msa1003030 MtrunA17_Chr8g0334881 53.636 110 50 1 9 117 7 116 2.22e-34 129
Msa1003030 MtrunA17_Chr5g0440781 45.522 134 71 2 13 145 13 145 7.53e-34 124
Msa1003030 MtrunA17_Chr4g0030881 50.877 114 49 1 13 119 8 121 1.60e-33 125
Msa1003030 MtrunA17_Chr5g0441141 45.522 134 71 2 13 145 13 145 2.12e-33 125
Msa1003030 MtrunA17_Chr5g0440761 45.522 134 71 2 13 145 13 145 2.23e-33 125
Msa1003030 MtrunA17_Chr2g0293911 54.054 111 51 0 12 122 24 134 2.08e-32 124
Msa1003030 MtrunA17_Chr4g0068921 54.054 111 51 0 12 122 24 134 3.88e-32 120
Msa1003030 MtrunA17_Chr5g0395221 65.000 80 28 0 9 88 9 88 7.37e-32 115
Msa1003030 MtrunA17_Chr2g0323321 61.728 81 31 0 12 92 11 91 2.78e-31 115
Msa1003030 MtrunA17_Chr3g0093811 46.763 139 70 1 44 178 14 152 3.46e-31 119
Msa1003030 MtrunA17_Chr4g0008551 43.506 154 80 3 14 165 38 186 6.66e-31 120
Msa1003030 MtrunA17_Chr5g0441131 48.673 113 56 2 13 124 10 121 1.14e-30 115
Msa1003030 MtrunA17_Chr3g0099141 59.036 83 34 0 12 94 40 122 1.16e-30 114
Msa1003030 MtrunA17_Chr4g0053431 52.941 102 47 1 14 115 5 105 2.73e-28 112
Msa1003030 MtrunA17_Chr5g0429661 46.154 104 55 1 12 115 120 222 3.31e-28 113
Msa1003030 MtrunA17_Chr5g0401731 46.341 123 65 1 14 136 15 136 2.56e-27 110
Msa1003030 MtrunA17_Chr7g0238631 41.317 167 84 5 11 170 110 269 1.32e-26 111
Msa1003030 MtrunA17_Chr6g0454921 47.748 111 57 1 14 124 15 124 5.90e-26 103
Msa1003030 MtrunA17_Chr3g0133601 50.000 102 50 1 14 115 37 137 7.16e-25 101
Msa1003030 MtrunA17_Chr3g0139671 47.170 106 55 1 11 116 82 186 9.76e-25 106
Msa1003030 MtrunA17_Chr6g0453751 54.839 93 33 2 12 95 20 112 1.18e-24 98.2
Msa1003030 MtrunA17_Chr3g0117511 34.731 167 98 4 14 176 183 342 1.68e-24 104
Msa1003030 MtrunA17_Chr6g0480581 41.379 116 66 2 14 129 4 117 2.73e-24 100
Msa1003030 MtrunA17_Chr4g0058991 41.071 112 63 2 9 119 204 313 5.82e-24 102
Msa1003030 MtrunA17_Chr7g0229101 60.000 70 28 0 44 113 4 73 5.92e-24 98.6
Msa1003030 MtrunA17_Chr5g0434901 60.294 68 27 0 46 113 7 74 7.71e-24 95.5
Msa1003030 MtrunA17_Chr1g0157731 45.283 106 57 1 11 116 88 192 9.32e-24 103
Msa1003030 MtrunA17_Chr7g0229131 57.746 71 30 0 44 114 4 74 3.36e-23 95.1
Msa1003030 MtrunA17_Chr5g0417621 40.367 109 64 1 11 119 131 238 3.75e-23 100
Msa1003030 MtrunA17_Chr5g0437321 48.485 99 50 1 14 112 19 116 4.47e-23 97.8
Msa1003030 MtrunA17_Chr6g0460661 42.453 106 58 2 14 118 16 119 4.58e-23 94.7
Msa1003030 MtrunA17_Chr4g0042501 41.509 106 61 1 14 119 105 209 4.66e-23 100
Msa1003030 MtrunA17_Chr7g0228531 39.623 106 62 2 14 119 220 323 5.76e-22 97.1
Msa1003030 MtrunA17_Chr3g0125801 43.925 107 57 2 14 119 16 120 8.57e-22 94.4
Msa1003030 MtrunA17_Chr5g0425591 48.810 84 42 1 13 95 10 93 9.05e-22 89.0
Msa1003030 MtrunA17_Chr5g0397841 45.918 98 52 1 12 109 108 204 1.17e-21 96.3
Msa1003030 MtrunA17_Chr6g0460671 40.952 105 61 1 14 118 99 202 1.76e-21 94.7
Msa1003030 MtrunA17_Chr7g0228401 45.977 87 46 1 25 111 290 375 2.95e-21 95.5
Msa1003030 MtrunA17_Chr1g0177901 37.594 133 67 4 25 149 5 129 4.95e-21 90.5
Msa1003030 MtrunA17_Chr7g0254261 39.344 122 73 1 8 129 83 203 2.71e-20 91.3
Msa1003030 MtrunA17_Chr7g0228481 39.091 110 62 3 14 120 220 327 5.40e-20 91.3
Msa1003030 MtrunA17_Chr7g0238651 37.069 116 65 2 17 124 10 125 2.91e-19 88.2
Msa1003030 MtrunA17_Chr7g0233061 36.792 106 63 3 14 119 180 281 5.63e-17 81.6
Msa1003030 MtrunA17_Chr5g0416341 36.190 105 66 1 17 121 29 132 7.07e-17 82.0
Msa1003030 MtrunA17_Chr1g0193901 49.438 89 43 2 10 96 9 97 1.12e-15 72.8
Msa1003030 MtrunA17_Chr1g0193891 49.438 89 43 2 10 96 9 97 1.12e-15 72.8
Msa1003030 MtrunA17_Chr1g0193871 49.438 89 43 2 10 96 9 97 1.12e-15 72.8
Msa1003030 MtrunA17_Chr1g0193881 49.438 89 43 2 10 96 9 97 1.12e-15 72.8
Msa1003030 MtrunA17_Chr8g0362231 35.354 99 63 1 17 115 25 122 1.98e-15 77.4
Msa1003030 MtrunA17_Chr5g0395231 62.745 51 19 0 78 128 5 55 7.79e-15 73.6
Msa1003030 MtrunA17_Chr4g0042621 71.739 46 12 1 84 128 9 54 4.83e-13 69.7
Msa1003030 MtrunA17_Chr3g0104491 36.782 87 48 3 53 132 1 87 3.86e-12 66.2
Msa1003030 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 9.57e-12 60.5
Msa1003030 MtrunA17_Chr3g0145551 62.500 40 15 0 92 131 2 41 2.62e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003030 AT4G01680.3 84.211 152 23 1 1 152 1 151 2.19e-92 277
Msa1003030 AT4G01680.1 84.211 152 23 1 1 152 1 151 2.07e-91 278
Msa1003030 AT1G57560.1 51.211 289 129 6 1 278 1 288 1.66e-88 270
Msa1003030 AT4G01680.2 78.049 164 23 2 1 152 1 163 6.16e-88 270
Msa1003030 AT1G09540.1 40.625 416 162 11 1 384 1 363 6.95e-87 268
Msa1003030 AT1G57560.2 87.970 133 16 0 1 133 1 133 4.91e-85 260
Msa1003030 AT5G26660.1 86.822 129 17 0 1 129 1 129 6.88e-83 257
Msa1003030 AT3G12720.1 70.635 126 36 1 1 126 12 136 6.81e-66 212
Msa1003030 AT3G13890.2 76.724 116 27 0 1 116 1 116 3.19e-65 212
Msa1003030 AT3G61250.1 68.992 129 40 0 1 129 1 129 5.35e-63 204
Msa1003030 AT1G63910.1 67.969 128 41 0 1 128 1 128 7.63e-63 206
Msa1003030 AT3G02940.2 64.885 131 46 0 1 131 1 131 2.13e-62 203
Msa1003030 AT3G13890.1 71.200 125 27 1 1 116 1 125 4.28e-62 204
Msa1003030 AT3G02940.1 64.885 131 46 0 1 131 1 131 6.30e-62 202
Msa1003030 AT3G02940.3 64.885 131 46 0 1 131 1 131 6.30e-62 202
Msa1003030 AT5G16770.4 64.885 131 46 0 1 131 1 131 9.94e-62 202
Msa1003030 AT5G16770.3 64.885 131 46 0 1 131 1 131 9.94e-62 202
Msa1003030 AT5G16770.1 64.885 131 46 0 1 131 1 131 2.43e-61 201
Msa1003030 AT5G16770.2 64.885 131 46 0 1 131 1 131 2.43e-61 201
Msa1003030 AT5G15310.1 66.667 132 44 0 1 132 1 132 8.32e-61 199
Msa1003030 AT5G15310.2 66.667 132 44 0 1 132 1 132 8.59e-61 199
Msa1003030 AT5G15310.4 66.667 132 44 0 1 132 1 132 1.37e-60 196
Msa1003030 AT4G34990.1 57.237 152 64 1 1 151 1 152 1.88e-60 197
Msa1003030 AT3G01140.2 66.667 132 44 0 1 132 1 132 4.31e-60 198
Msa1003030 AT1G66230.1 62.500 144 54 0 1 144 1 144 8.88e-60 195
Msa1003030 AT2G16720.1 61.654 133 51 0 1 133 1 133 4.12e-59 193
Msa1003030 AT4G05100.1 65.116 129 44 1 1 128 1 129 5.53e-59 194
Msa1003030 AT4G38620.1 54.658 161 62 2 1 158 1 153 6.72e-59 193
Msa1003030 AT5G16600.1 62.676 142 53 0 1 142 1 142 7.85e-59 194
Msa1003030 AT1G34670.1 63.636 132 48 0 1 132 1 132 9.29e-59 195
Msa1003030 AT4G21440.1 64.844 128 45 0 1 128 1 128 9.77e-59 194
Msa1003030 AT4G09460.1 52.047 171 82 0 1 171 1 171 1.18e-58 191
Msa1003030 AT4G28110.1 64.062 128 46 0 1 128 1 128 4.87e-58 191
Msa1003030 AT5G60890.1 57.971 138 58 0 1 138 1 138 5.54e-58 191
Msa1003030 AT4G12350.1 63.636 132 48 0 1 132 1 132 7.70e-58 190
Msa1003030 AT5G56110.1 64.394 132 47 0 1 132 1 132 1.18e-57 191
Msa1003030 AT5G65230.1 64.122 131 47 0 1 131 1 131 1.68e-57 190
Msa1003030 AT4G22680.1 61.481 135 52 0 1 135 1 135 1.96e-57 189
Msa1003030 AT5G10280.1 61.364 132 51 0 1 132 1 132 2.23e-57 191
Msa1003030 AT3G01140.1 68.852 122 38 0 6 127 49 170 2.60e-57 192
Msa1003030 AT1G22640.1 61.069 131 51 0 1 131 1 131 5.44e-57 187
Msa1003030 AT5G61420.2 60.448 134 53 0 1 134 1 134 7.30e-57 190
Msa1003030 AT5G07690.1 59.712 139 56 0 1 139 1 139 2.18e-56 188
Msa1003030 AT4G17785.1 64.341 129 45 1 1 128 1 129 6.97e-56 187
Msa1003030 AT4G17785.2 64.341 129 45 1 1 128 1 129 7.68e-56 187
Msa1003030 AT5G12870.1 72.477 109 30 0 10 118 16 124 2.66e-55 184
Msa1003030 AT5G14340.1 51.176 170 80 1 1 170 13 179 4.15e-55 183
Msa1003030 AT5G07700.1 50.279 179 74 2 1 164 1 179 4.33e-55 185
Msa1003030 AT5G07700.2 50.279 179 74 2 1 164 1 179 4.33e-55 185
Msa1003030 AT3G08500.1 70.940 117 31 1 4 117 19 135 5.56e-55 184
Msa1003030 AT1G74430.1 63.281 128 47 0 1 128 1 128 7.89e-55 182
Msa1003030 AT1G18570.1 61.069 131 50 1 1 130 1 131 1.10e-54 184
Msa1003030 AT1G35515.1 59.542 131 53 0 1 131 1 131 3.48e-54 178
Msa1003030 AT3G28470.1 61.364 132 51 0 1 132 1 132 2.22e-53 180
Msa1003030 AT1G74080.1 59.690 129 52 0 1 129 1 129 2.90e-53 180
Msa1003030 AT5G54230.1 61.719 128 49 0 1 128 1 128 3.91e-53 179
Msa1003030 AT3G23250.1 64.655 116 41 0 1 116 1 116 5.64e-53 177
Msa1003030 AT1G79180.1 67.521 117 38 0 2 118 4 120 1.25e-52 177
Msa1003030 AT3G13540.1 62.097 124 47 0 6 129 17 140 2.55e-52 175
Msa1003030 AT2G31180.1 49.432 176 84 2 1 173 1 174 4.26e-52 174
Msa1003030 AT1G06180.1 39.841 251 126 4 1 244 1 233 5.73e-51 171
Msa1003030 AT5G26660.2 83.333 90 15 0 40 129 9 98 8.30e-51 173
Msa1003030 AT5G62320.1 56.250 144 56 1 2 138 3 146 1.23e-50 170
Msa1003030 AT3G48920.1 67.568 111 36 0 9 119 15 125 1.50e-50 171
Msa1003030 AT1G16490.1 56.849 146 59 1 2 143 4 149 2.17e-50 171
Msa1003030 AT1G18710.1 58.140 129 54 0 1 129 1 129 2.45e-50 170
Msa1003030 AT1G56160.1 65.217 115 40 0 2 116 4 118 1.40e-49 169
Msa1003030 AT4G25560.1 40.625 256 119 7 8 255 6 236 3.39e-47 162
Msa1003030 AT5G23000.1 62.393 117 43 1 1 116 1 117 3.88e-47 164
Msa1003030 AT5G57620.1 60.000 125 47 2 1 122 1 125 1.13e-46 162
Msa1003030 AT5G49330.1 62.931 116 43 0 1 116 1 116 1.47e-46 162
Msa1003030 AT5G52260.1 71.028 107 31 0 9 115 9 115 3.48e-46 159
Msa1003030 AT2G47460.1 57.576 132 56 0 1 132 1 132 3.72e-46 162
Msa1003030 AT3G62610.1 62.069 116 44 0 1 116 1 116 5.82e-46 161
Msa1003030 AT3G49690.1 60.833 120 46 1 1 119 1 120 7.17e-46 160
Msa1003030 AT1G79180.2 52.667 150 38 1 2 118 4 153 8.79e-46 160
Msa1003030 AT3G12820.1 61.538 117 45 0 3 119 5 121 9.72e-46 157
Msa1003030 AT5G65790.1 60.000 120 47 1 1 119 1 120 2.15e-45 160
Msa1003030 AT3G47600.1 57.627 118 50 0 1 118 1 118 1.05e-44 157
Msa1003030 AT1G74650.1 59.483 116 47 0 1 116 1 116 1.65e-44 157
Msa1003030 AT5G62470.2 51.370 146 64 1 1 146 1 139 2.37e-44 157
Msa1003030 AT4G37780.1 44.974 189 90 5 1 188 1 176 2.47e-44 155
Msa1003030 AT2G36890.1 55.906 127 55 1 1 126 1 127 1.31e-43 154
Msa1003030 AT2G36890.2 55.906 127 55 1 1 126 42 168 1.93e-43 154
Msa1003030 AT1G08810.1 55.738 122 54 0 1 122 1 122 2.15e-43 152
Msa1003030 AT5G35550.1 59.322 118 46 1 1 116 1 118 7.28e-43 150
Msa1003030 AT5G62470.1 51.370 146 63 2 1 146 1 138 1.42e-42 152
Msa1003030 AT5G06100.1 62.037 108 41 0 10 117 30 137 5.81e-42 153
Msa1003030 AT5G14750.1 56.731 104 45 0 13 116 17 120 7.11e-42 146
Msa1003030 AT3G28910.1 57.759 116 49 0 1 116 1 116 8.71e-42 149
Msa1003030 AT3G27810.1 55.856 111 49 0 11 121 19 129 1.69e-41 146
Msa1003030 AT5G06100.5 62.037 108 41 0 10 117 30 137 2.14e-41 152
Msa1003030 AT5G06100.2 62.037 108 41 0 10 117 30 137 2.14e-41 152
Msa1003030 AT5G06100.3 62.037 108 41 0 10 117 30 137 2.14e-41 152
Msa1003030 AT5G06100.4 62.037 108 41 0 10 117 30 137 2.14e-41 152
Msa1003030 AT3G01530.1 57.547 106 45 0 12 117 25 130 3.41e-41 144
Msa1003030 AT5G55020.1 60.748 107 42 0 12 118 26 132 7.92e-41 151
Msa1003030 AT3G11440.2 60.377 106 42 0 12 117 41 146 1.68e-40 149
Msa1003030 AT5G40330.1 55.769 104 46 0 13 116 13 116 1.77e-40 143
Msa1003030 AT4G26930.1 59.813 107 43 0 12 118 19 125 1.78e-40 147
Msa1003030 AT5G40350.1 56.364 110 48 0 11 120 16 125 1.84e-40 143
Msa1003030 AT5G52600.1 44.805 154 70 2 9 147 9 162 2.11e-40 142
Msa1003030 AT3G27920.1 53.271 107 50 0 10 116 12 118 5.16e-40 142
Msa1003030 AT3G11440.3 58.716 109 45 0 9 117 38 146 8.23e-40 149
Msa1003030 AT3G11440.4 58.716 109 45 0 9 117 38 146 8.23e-40 149
Msa1003030 AT3G11440.1 58.716 109 45 0 9 117 38 146 8.23e-40 149
Msa1003030 AT2G32460.1 56.481 108 47 0 10 117 16 123 2.18e-39 147
Msa1003030 AT2G32460.2 56.481 108 47 0 10 117 4 111 2.41e-39 146
Msa1003030 AT2G26960.1 54.867 113 50 1 9 121 17 128 2.95e-39 145
Msa1003030 AT4G13480.1 60.952 105 41 0 13 117 7 111 9.04e-39 140
Msa1003030 AT3G24310.1 60.000 105 42 0 13 117 19 123 4.18e-38 138
Msa1003030 AT1G25340.1 52.500 120 57 0 13 132 19 138 6.16e-38 138
Msa1003030 AT3G30210.1 60.784 102 40 0 13 114 28 129 9.03e-38 137
Msa1003030 AT1G48000.1 56.731 104 45 0 11 114 31 134 3.13e-37 135
Msa1003030 AT1G68320.1 52.033 123 59 0 10 132 17 139 3.20e-37 136
Msa1003030 AT3G53200.1 56.075 107 47 0 9 115 6 112 6.01e-36 132
Msa1003030 AT1G66370.1 56.731 104 45 0 12 115 8 111 9.39e-36 131
Msa1003030 AT2G26950.1 50.435 115 54 1 6 120 10 121 1.62e-35 134
Msa1003030 AT5G59780.3 52.252 111 53 0 9 119 5 115 6.60e-35 129
Msa1003030 AT2G47190.1 49.550 111 56 0 12 122 20 130 7.07e-35 130
Msa1003030 AT3G46130.1 53.271 107 50 0 13 119 10 116 3.12e-34 127
Msa1003030 AT1G56650.1 51.200 125 53 1 12 128 8 132 5.05e-34 127
Msa1003030 AT1G66380.1 59.615 104 42 0 12 115 8 111 1.21e-33 122
Msa1003030 AT3G60460.1 49.580 119 53 2 9 126 8 120 1.55e-33 127
Msa1003030 AT3G06490.1 56.757 111 48 0 12 122 19 129 3.72e-33 126
Msa1003030 AT1G25340.2 50.000 120 55 1 13 132 19 133 4.02e-33 125
Msa1003030 AT1G25340.3 50.000 120 55 1 13 132 19 133 1.09e-32 125
Msa1003030 AT1G66390.1 57.547 106 45 0 10 115 6 111 5.67e-32 121
Msa1003030 AT5G49620.1 54.054 111 51 0 12 122 26 136 4.36e-31 120
Msa1003030 AT5G35550.2 63.043 92 26 1 25 116 38 121 8.47e-31 119
Msa1003030 AT3G12820.2 69.444 72 22 0 48 119 2 73 1.38e-30 116
Msa1003030 AT3G27810.2 61.039 77 30 0 45 121 4 80 4.09e-30 114
Msa1003030 AT5G14750.3 65.217 69 24 0 48 116 18 86 7.13e-29 110
Msa1003030 AT5G40350.2 61.842 76 29 0 45 120 5 80 1.09e-28 110
Msa1003030 AT3G46130.3 61.842 76 29 0 44 119 9 84 4.94e-28 110
Msa1003030 AT3G47600.2 53.684 95 40 1 24 118 22 112 8.46e-28 112
Msa1003030 AT5G59780.2 61.039 77 30 0 43 119 18 94 1.12e-27 108
Msa1003030 AT3G46130.4 61.039 77 30 0 43 119 18 94 1.12e-27 109
Msa1003030 AT5G49620.2 48.000 125 51 1 12 122 26 150 1.28e-27 111
Msa1003030 AT1G18960.1 44.167 120 62 3 14 132 10 125 1.33e-27 111
Msa1003030 AT3G53200.2 63.158 76 28 0 40 115 4 79 1.48e-27 108
Msa1003030 AT4G18770.1 45.045 111 60 1 9 119 212 321 2.05e-27 112
Msa1003030 AT1G22640.3 60.811 74 29 0 58 131 1 74 2.76e-27 107
Msa1003030 AT5G67300.1 51.961 102 48 1 14 115 6 106 1.13e-26 108
Msa1003030 AT5G40360.1 44.444 108 58 2 9 116 153 258 1.80e-26 108
Msa1003030 AT3G27785.1 43.333 120 63 3 9 125 184 301 5.55e-26 108
Msa1003030 AT5G58850.1 41.935 124 66 2 12 135 103 220 6.23e-26 108
Msa1003030 AT4G37260.1 50.467 107 52 1 14 120 13 118 8.19e-26 106
Msa1003030 AT2G39880.1 54.369 103 44 2 14 115 50 150 1.35e-25 106
Msa1003030 AT3G50060.1 51.961 102 48 1 14 115 6 106 1.79e-25 105
Msa1003030 AT1G71030.2 55.844 77 34 0 51 127 5 81 3.75e-25 101
Msa1003030 AT5G02320.1 47.170 106 55 1 11 116 124 228 4.80e-25 107
Msa1003030 AT5G02320.2 47.170 106 55 1 11 116 124 228 4.80e-25 107
Msa1003030 AT1G71030.1 55.844 77 34 0 51 127 19 95 4.81e-25 101
Msa1003030 AT5G02320.3 47.619 105 54 1 12 116 65 168 5.33e-25 106
Msa1003030 AT3G09370.1 49.038 104 52 1 12 115 128 230 6.32e-25 106
Msa1003030 AT3G09370.2 49.038 104 52 1 12 115 133 235 6.37e-25 106
Msa1003030 AT3G55730.1 52.427 103 46 2 14 115 56 156 1.00e-24 104
Msa1003030 AT5G11050.1 43.137 102 57 1 14 115 105 205 1.08e-24 105
Msa1003030 AT3G09370.3 49.038 104 52 1 12 115 141 243 1.12e-24 105
Msa1003030 AT3G09230.1 48.544 103 52 1 14 116 55 156 1.66e-24 104
Msa1003030 AT1G17950.1 43.396 106 59 1 14 119 5 109 2.53e-24 100
Msa1003030 AT3G23250.2 69.492 59 18 0 58 116 1 59 3.24e-24 100
Msa1003030 AT5G11510.3 45.283 106 57 1 11 116 78 182 7.11e-24 104
Msa1003030 AT5G11510.1 45.283 106 57 1 11 116 78 182 7.11e-24 104
Msa1003030 AT5G11510.4 45.283 106 57 1 11 116 78 182 7.11e-24 104
Msa1003030 AT5G11510.2 45.283 106 57 1 11 116 78 182 9.40e-24 103
Msa1003030 AT5G11510.5 45.283 106 57 1 11 116 78 182 1.12e-23 103
Msa1003030 AT1G69560.1 41.071 112 63 2 9 119 102 211 1.18e-23 100
Msa1003030 AT1G69560.2 41.071 112 63 2 9 119 118 227 1.20e-23 100
Msa1003030 AT2G23290.1 50.000 102 50 1 14 115 13 113 1.50e-23 100
Msa1003030 AT1G73410.1 47.170 106 53 2 14 118 6 109 5.80e-23 97.1
Msa1003030 AT1G26780.1 42.593 108 59 2 12 118 96 201 8.47e-23 97.4
Msa1003030 AT1G26780.2 42.593 108 59 2 12 118 96 201 9.29e-23 98.6
Msa1003030 AT4G32730.5 44.340 106 58 1 11 116 84 188 1.13e-22 100
Msa1003030 AT4G32730.4 44.340 106 58 1 11 116 84 188 1.13e-22 100
Msa1003030 AT4G32730.3 44.340 106 58 1 11 116 84 188 1.13e-22 100
Msa1003030 AT4G32730.2 44.340 106 58 1 11 116 84 188 1.13e-22 100
Msa1003030 AT4G32730.1 44.340 106 58 1 11 116 84 188 1.32e-22 100
Msa1003030 AT1G73410.2 47.170 106 53 2 14 118 6 109 2.05e-22 94.4
Msa1003030 AT2G25230.1 39.831 118 68 2 9 124 21 137 4.59e-22 94.4
Msa1003030 AT4G33450.1 40.000 110 65 1 9 118 14 122 4.68e-22 94.7
Msa1003030 AT1G66380.3 58.442 77 32 0 39 115 2 78 7.00e-22 90.1
Msa1003030 AT1G66380.2 57.500 80 34 0 10 89 6 85 7.58e-22 90.1
Msa1003030 AT5G17800.1 40.000 105 62 1 14 118 93 196 3.80e-21 93.6
Msa1003030 AT3G29020.1 37.838 111 68 1 14 124 65 174 1.30e-20 90.1
Msa1003030 AT3G29020.2 38.679 106 64 1 14 119 67 171 1.47e-20 91.7
Msa1003030 AT5G14750.4 58.065 62 26 0 58 119 1 62 2.78e-20 86.7
Msa1003030 AT5G14750.2 58.065 62 26 0 58 119 1 62 2.78e-20 86.7
Msa1003030 AT2G02820.3 38.655 119 71 2 4 121 19 136 7.55e-20 90.1
Msa1003030 AT2G02820.1 38.655 119 71 2 4 121 19 136 1.11e-19 90.9
Msa1003030 AT2G02820.2 38.655 119 71 2 4 121 19 136 1.81e-19 90.5
Msa1003030 AT4G00540.2 43.636 110 58 2 12 118 101 209 2.73e-19 89.4
Msa1003030 AT5G40430.1 39.640 111 64 3 9 119 49 156 4.55e-19 86.3
Msa1003030 AT4G00540.1 43.636 110 58 2 12 118 99 207 4.94e-19 88.6
Msa1003030 AT1G14350.2 40.000 105 62 1 17 121 28 131 3.34e-18 86.3
Msa1003030 AT1G14350.1 40.000 105 62 1 17 121 28 131 3.34e-18 86.3
Msa1003030 AT5G61420.1 68.519 54 17 0 81 134 2 55 6.13e-18 84.0
Msa1003030 AT2G37630.1 35.652 115 67 2 17 124 7 121 1.08e-16 81.3
Msa1003030 AT5G39700.1 33.621 116 76 1 9 124 51 165 4.44e-16 76.3
Msa1003030 AT1G74430.2 61.538 52 20 0 77 128 8 59 3.45e-15 74.3
Msa1003030 AT4G28110.2 73.171 41 11 0 88 128 4 44 1.29e-14 72.4
Msa1003030 AT5G15310.3 71.111 45 13 0 88 132 9 53 4.44e-14 72.0
Msa1003030 AT5G14340.2 39.759 83 47 1 88 170 10 89 6.41e-14 70.1
Msa1003030 AT5G59780.1 59.574 47 19 0 73 119 4 50 3.40e-13 67.8
Msa1003030 AT3G46130.2 59.574 47 19 0 73 119 4 50 4.17e-13 67.8
Msa1003030 AT1G14350.3 45.455 66 36 0 56 121 23 88 1.68e-12 68.9
Msa1003030 AT1G14350.4 45.455 66 36 0 56 121 23 88 1.68e-12 68.9
Msa1003030 AT4G25560.2 65.217 46 16 0 70 115 2 47 2.60e-12 66.2
Msa1003030 AT3G18100.1 37.500 96 59 1 13 108 545 639 1.04e-11 67.0
Msa1003030 AT3G18100.4 37.500 96 59 1 13 108 384 478 1.25e-11 66.6
Msa1003030 AT3G18100.3 37.500 96 59 1 13 108 497 591 1.33e-11 66.6
Msa1003030 AT3G18100.2 37.500 96 59 1 13 108 332 426 1.70e-11 66.2
Msa1003030 AT1G22640.2 59.091 44 18 0 88 131 16 59 2.18e-11 62.8

Find 80 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATACAGAAGAAGCTAAA+TGG 0.220741 6_4:-89844870 Msa1003030:CDS
ATTGTTGTTATGTAAGTTTA+AGG 0.238149 6_4:+89844921 None:intergenic
ATTTCCATTGCATATGCTTT+TGG 0.239502 6_4:+89845252 None:intergenic
CAAATATCAACAAAGCAAAA+AGG 0.282988 6_4:+89844481 None:intergenic
TTTCAAAAGGTTCAATTCAT+TGG 0.290203 6_4:+89845338 None:intergenic
CAGAAACTCAGAGAAGCTTT+TGG 0.294526 6_4:-89844667 Msa1003030:CDS
TCTGGTACAAAGTTCATTAA+TGG 0.301366 6_4:+89844772 None:intergenic
CATTCAACCCTCAGATTTGA+TGG 0.319312 6_4:-89845190 Msa1003030:CDS
AACTTTGTACCAGATAGTTT+TGG 0.328603 6_4:-89844763 Msa1003030:CDS
CTACTAGTGTTTGAATCATT+TGG 0.336320 6_4:+89845117 None:intergenic
TTCTTCTTGGGGAGGATTGA+TGG 0.346985 6_4:-89844896 Msa1003030:CDS
TCAAATTGCGGCGCAATTAC+CGG 0.347948 6_4:-89845526 Msa1003030:CDS
TGGGGTAGAATTGGTGAATA+AGG 0.350617 6_4:-89844426 Msa1003030:three_prime_UTR
ACAATGAAATAAAGAATCTA+TGG 0.352801 6_4:-89845494 Msa1003030:CDS
GTTGAACTTCATGCAGTACT+AGG 0.358540 6_4:-89845720 Msa1003030:CDS
TCAGAAGCCAACATTAAGAT+AGG 0.359272 6_4:+89844820 None:intergenic
AAAATAGCTCCAAAACTATC+TGG 0.372468 6_4:+89844754 None:intergenic
AACCATTGGTTCAACCAAAC+TGG 0.373334 6_4:-89845093 Msa1003030:CDS
AAAAGGAGTTGAGTTAATAT+AGG 0.380687 6_4:+89846166 None:intergenic
AAGAAGAGACTGAGGCAAAA+AGG 0.381753 6_4:-89845459 Msa1003030:CDS
TTGTCTGAGGTTGAGAATAA+TGG 0.383111 6_4:-89845411 Msa1003030:CDS
CTCATAGGAAAATTCACAAA+TGG 0.392453 6_4:-89846076 Msa1003030:exon
AAAAGCATATGCAATGGAAA+TGG 0.406668 6_4:-89845250 Msa1003030:CDS
TCTGAGTTTCTGAATGTCCT+TGG 0.406727 6_4:+89844678 None:intergenic
TCTTGTTCTTGCTTTGTATG+AGG 0.413126 6_4:+89844730 None:intergenic
CTGAGGCATATAACAAAGTA+TGG 0.421343 6_4:-89845982 Msa1003030:CDS
TTGAACTCTCTGATTTCAAA+AGG 0.423755 6_4:+89845325 None:intergenic
CAAATTGCGGCGCAATTACC+GGG 0.427154 6_4:-89845525 Msa1003030:CDS
ACTTCTCTCTCATGAGTCAT+AGG 0.442207 6_4:-89846198 Msa1003030:five_prime_UTR
TCATACAGAAGAAGCTAAAT+GGG 0.442713 6_4:-89844869 Msa1003030:CDS
CTATGAGTGTGGGGTAGAAT+TGG 0.448665 6_4:-89844435 Msa1003030:three_prime_UTR
ATTAATTTACCTGCTTGCTT+AGG 0.450338 6_4:+89845937 None:intergenic
GTTGTTACAAGCAGAAGCTT+AGG 0.455012 6_4:-89846041 Msa1003030:CDS
TTCCAGTTTGGTTGAACCAA+TGG 0.463181 6_4:+89845091 None:intergenic
TGTTTGTATAACTCATTTGA+AGG 0.475874 6_4:+89845157 None:intergenic
TCAAAACCCTATCTTAATGT+TGG 0.484585 6_4:-89844827 Msa1003030:CDS
TCATAGGAAAATTCACAAAT+GGG 0.491057 6_4:-89846075 Msa1003030:exon
CAAAGTATGGTCATGGATGT+TGG 0.495747 6_4:-89845969 Msa1003030:CDS
TTCATGCAGTACTAGGGAAT+AGG 0.501696 6_4:-89845713 Msa1003030:intron
TCATTGGATAGTAATATCTC+TGG 0.506328 6_4:+89845354 None:intergenic
GTGGTAAGAGCTGCAGGCTA+AGG 0.513697 6_4:-89845809 Msa1003030:CDS
GACAATGGTTTATGAGTCAC+AGG 0.514909 6_4:+89845429 None:intergenic
TTATTCTCAACCTCAGACAA+TGG 0.517875 6_4:+89845414 None:intergenic
AAAGATGTGGTAAGAGCTGC+AGG 0.517924 6_4:-89845815 Msa1003030:CDS
GTGAAGTGGCAGCTAAGAAA+AGG 0.519650 6_4:+89846149 None:intergenic
AGAAGCTTAGGAAAGGTCTA+TGG 0.519654 6_4:-89846029 Msa1003030:CDS
ATTTCATTGTCTGTCCTCCC+CGG 0.522422 6_4:+89845507 None:intergenic
GAGATATGTGAACATGATTG+TGG 0.523895 6_4:-89844645 Msa1003030:exon
TGATAGAGAGAATCGAAGGA+AGG 0.525000 6_4:+89846123 None:intergenic
GTAAGAGCTGCAGGCTAAGG+TGG 0.533022 6_4:-89845806 Msa1003030:CDS
GTTTGTATAACTCATTTGAA+GGG 0.533524 6_4:+89845158 None:intergenic
CATATAACAAAGTATGGTCA+TGG 0.533584 6_4:-89845976 Msa1003030:CDS
ATTCAACCCTCAGATTTGAT+GGG 0.538604 6_4:-89845189 Msa1003030:CDS
CATGGTTGTTGATGTTGATG+TGG 0.542885 6_4:+89845029 None:intergenic
TTGAACTTCATGCAGTACTA+GGG 0.545997 6_4:-89845719 Msa1003030:CDS
ATGGTTGTTGATGTTGATGT+GGG 0.549942 6_4:+89845030 None:intergenic
TACCAGATGGTCTCAAATTG+CGG 0.550232 6_4:-89845538 Msa1003030:intron
ATAATTTCCCATCAAATCTG+AGG 0.562782 6_4:+89845182 None:intergenic
TTATCAGGTTTGCAAAGATG+TGG 0.565876 6_4:-89845828 Msa1003030:intron
CAGAAGCCAACATTAAGATA+GGG 0.569917 6_4:+89844821 None:intergenic
TTTGTATAACTCATTTGAAG+GGG 0.572929 6_4:+89845159 None:intergenic
TTAGTGATAGAGAGAATCGA+AGG 0.573577 6_4:+89846119 None:intergenic
TTCACCAAAAGCATATGCAA+TGG 0.574736 6_4:-89845256 Msa1003030:CDS
AGGAAAATTCACAAATGGGA+AGG 0.581895 6_4:-89846071 Msa1003030:exon
GGTACAAAGTTCATTAATGG+AGG 0.582508 6_4:+89844775 None:intergenic
CTCTGTAGAAACATTGTCAG+AGG 0.586264 6_4:+89844963 None:intergenic
CTTGTTTGAAGAAGAGACTG+AGG 0.589737 6_4:-89845467 Msa1003030:CDS
CAAACACTAGTAGTAACCAT+TGG 0.594685 6_4:-89845107 Msa1003030:CDS
TAATTTCCCATCAAATCTGA+GGG 0.601910 6_4:+89845183 None:intergenic
GCATATGCAATGGAAATGGA+AGG 0.607612 6_4:-89845246 Msa1003030:CDS
AAGAGGAACATTCTCACAAG+AGG 0.608650 6_4:-89845757 Msa1003030:CDS
TACAAGCAGAAGCTTAGGAA+AGG 0.614815 6_4:-89846036 Msa1003030:CDS
TCGAAGGAAGGAAAGTGAAG+TGG 0.629471 6_4:+89846135 None:intergenic
AGTTCAGTACCTAAGCAAGC+AGG 0.631698 6_4:-89845946 Msa1003030:intron
TCTGTAGAAACATTGTCAGA+GGG 0.637560 6_4:+89844964 None:intergenic
TGAGGTTGAGAATAATGGAG+AGG 0.653412 6_4:-89845406 Msa1003030:CDS
GACTCATAAACCATTGTCTG+AGG 0.676132 6_4:-89845424 Msa1003030:CDS
AAAAGAATTAGGAAGAAACA+TGG 0.684494 6_4:+89845011 None:intergenic
TTGCGGCGCAATTACCGGGG+AGG 0.693671 6_4:-89845521 Msa1003030:CDS
AAATTGCGGCGCAATTACCG+GGG 0.696240 6_4:-89845524 Msa1003030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTATTATTATTATC+AGG - chr6_4:89844811-89844830 Msa1003030:CDS 10.0%
!!! ATGAACATAATTTTTTAAAA+CGG + chr6_4:89845088-89845107 None:intergenic 10.0%
!!! TTTTGTTTATTATTATTATC+AGG - chr6_4:89844811-89844830 Msa1003030:CDS 10.0%
!!! ATGAACATAATTTTTTAAAA+CGG + chr6_4:89845088-89845107 None:intergenic 10.0%
!! ACATTATTATTATATGCTAA+TGG + chr6_4:89844758-89844777 None:intergenic 15.0%
!!! CAAATTGCTTTTTTTTTTTT+TGG + chr6_4:89846140-89846159 None:intergenic 15.0%
!! ACATTATTATTATATGCTAA+TGG + chr6_4:89844758-89844777 None:intergenic 15.0%
!!! CAAATTGCTTTTTTTTTTTT+TGG + chr6_4:89846140-89846159 None:intergenic 15.0%
!! ACAATGAAATAAAGAATCTA+TGG - chr6_4:89845160-89845179 Msa1003030:CDS 20.0%
!!! ATTGTTGTTATGTAAGTTTA+AGG + chr6_4:89845736-89845755 None:intergenic 20.0%
!!! ATAACAACAATTTTTCTTCT+TGG - chr6_4:89845745-89845764 Msa1003030:CDS 20.0%
!!! TAACAACAATTTTTCTTCTT+GGG - chr6_4:89845746-89845765 Msa1003030:CDS 20.0%
!!! AACTTCTAATATATTTTCCA+AGG - chr6_4:89845959-89845978 Msa1003030:CDS 20.0%
!! AAATATCAACAAAGCAAAAA+GGG + chr6_4:89846175-89846194 None:intergenic 20.0%
!! ATAGAAGAAAAAAATGTAGT+TGG + chr6_4:89846203-89846222 None:intergenic 20.0%
!! ACAATGAAATAAAGAATCTA+TGG - chr6_4:89845160-89845179 Msa1003030:CDS 20.0%
!!! ATTGTTGTTATGTAAGTTTA+AGG + chr6_4:89845736-89845755 None:intergenic 20.0%
!!! ATAACAACAATTTTTCTTCT+TGG - chr6_4:89845745-89845764 Msa1003030:CDS 20.0%
!!! TAACAACAATTTTTCTTCTT+GGG - chr6_4:89845746-89845765 Msa1003030:CDS 20.0%
!!! AACTTCTAATATATTTTCCA+AGG - chr6_4:89845959-89845978 Msa1003030:CDS 20.0%
!! AAATATCAACAAAGCAAAAA+GGG + chr6_4:89846175-89846194 None:intergenic 20.0%
!! ATAGAAGAAAAAAATGTAGT+TGG + chr6_4:89846203-89846222 None:intergenic 20.0%
! AAAAGGAGTTGAGTTAATAT+AGG + chr6_4:89844491-89844510 None:intergenic 25.0%
! TCATAGGAAAATTCACAAAT+GGG - chr6_4:89844579-89844598 Msa1003030:three_prime_UTR 25.0%
! TTAAGACCTGATTTAAAAAG+AGG - chr6_4:89844880-89844899 Msa1003030:CDS 25.0%
!! AATGTTCCTCTTTTTAAATC+AGG + chr6_4:89844889-89844908 None:intergenic 25.0%
! CCATAGGAGAAAATAAAAAA+GGG + chr6_4:89844991-89845010 None:intergenic 25.0%
! ACCATAGGAGAAAATAAAAA+AGG + chr6_4:89844992-89845011 None:intergenic 25.0%
!!! TTTTATTTTCTCCTATGGTT+AGG - chr6_4:89844993-89845012 Msa1003030:CDS 25.0%
! TTTCAAAAGGTTCAATTCAT+TGG + chr6_4:89845319-89845338 None:intergenic 25.0%
!! ACAAAGAGTTTTTCATAGAT+AGG - chr6_4:89845439-89845458 Msa1003030:CDS 25.0%
! TTTGTATAACTCATTTGAAG+GGG + chr6_4:89845498-89845517 None:intergenic 25.0%
! GTTTGTATAACTCATTTGAA+GGG + chr6_4:89845499-89845518 None:intergenic 25.0%
! TGTTTGTATAACTCATTTGA+AGG + chr6_4:89845500-89845519 None:intergenic 25.0%
!! TATCAAAAGATTTTCCAGTT+TGG + chr6_4:89845578-89845597 None:intergenic 25.0%
! AAAAGAATTAGGAAGAAACA+TGG + chr6_4:89845646-89845665 None:intergenic 25.0%
!! AACAACAATTTTTCTTCTTG+GGG - chr6_4:89845747-89845766 Msa1003030:CDS 25.0%
!!! TGTTGTTTTTTCTTTAGTAC+AGG - chr6_4:89846064-89846083 Msa1003030:exon 25.0%
! ATATACAAGAGAAAAATCAG+TGG + chr6_4:89846099-89846118 None:intergenic 25.0%
!! CTGATTTTTCTCTTGTATAT+AGG - chr6_4:89846099-89846118 Msa1003030:five_prime_UTR 25.0%
! CAAATATCAACAAAGCAAAA+AGG + chr6_4:89846176-89846195 None:intergenic 25.0%
!!! ATTTTTTTCTTCTATGAGTG+TGG - chr6_4:89846208-89846227 Msa1003030:five_prime_UTR 25.0%
!!! TTTTTTTCTTCTATGAGTGT+GGG - chr6_4:89846209-89846228 Msa1003030:five_prime_UTR 25.0%
! AAAAGGAGTTGAGTTAATAT+AGG + chr6_4:89844491-89844510 None:intergenic 25.0%
! TCATAGGAAAATTCACAAAT+GGG - chr6_4:89844579-89844598 Msa1003030:three_prime_UTR 25.0%
! TTAAGACCTGATTTAAAAAG+AGG - chr6_4:89844880-89844899 Msa1003030:CDS 25.0%
!! AATGTTCCTCTTTTTAAATC+AGG + chr6_4:89844889-89844908 None:intergenic 25.0%
! CCATAGGAGAAAATAAAAAA+GGG + chr6_4:89844991-89845010 None:intergenic 25.0%
! ACCATAGGAGAAAATAAAAA+AGG + chr6_4:89844992-89845011 None:intergenic 25.0%
!!! TTTTATTTTCTCCTATGGTT+AGG - chr6_4:89844993-89845012 Msa1003030:CDS 25.0%
! TTTCAAAAGGTTCAATTCAT+TGG + chr6_4:89845319-89845338 None:intergenic 25.0%
!! ACAAAGAGTTTTTCATAGAT+AGG - chr6_4:89845439-89845458 Msa1003030:CDS 25.0%
! TTTGTATAACTCATTTGAAG+GGG + chr6_4:89845498-89845517 None:intergenic 25.0%
! GTTTGTATAACTCATTTGAA+GGG + chr6_4:89845499-89845518 None:intergenic 25.0%
! TGTTTGTATAACTCATTTGA+AGG + chr6_4:89845500-89845519 None:intergenic 25.0%
!! TATCAAAAGATTTTCCAGTT+TGG + chr6_4:89845578-89845597 None:intergenic 25.0%
! AAAAGAATTAGGAAGAAACA+TGG + chr6_4:89845646-89845665 None:intergenic 25.0%
!! AACAACAATTTTTCTTCTTG+GGG - chr6_4:89845747-89845766 Msa1003030:CDS 25.0%
!!! TGTTGTTTTTTCTTTAGTAC+AGG - chr6_4:89846064-89846083 Msa1003030:exon 25.0%
! ATATACAAGAGAAAAATCAG+TGG + chr6_4:89846099-89846118 None:intergenic 25.0%
!! CTGATTTTTCTCTTGTATAT+AGG - chr6_4:89846099-89846118 Msa1003030:five_prime_UTR 25.0%
! CAAATATCAACAAAGCAAAA+AGG + chr6_4:89846176-89846195 None:intergenic 25.0%
!!! ATTTTTTTCTTCTATGAGTG+TGG - chr6_4:89846208-89846227 Msa1003030:five_prime_UTR 25.0%
!!! TTTTTTTCTTCTATGAGTGT+GGG - chr6_4:89846209-89846228 Msa1003030:five_prime_UTR 25.0%
TGAGAAGAAAAATGAAGCAA+TGG + chr6_4:89844562-89844581 None:intergenic 30.0%
!! TGCTTCATTTTTCTTCTCAT+AGG - chr6_4:89844563-89844582 Msa1003030:three_prime_UTR 30.0%
CTCATAGGAAAATTCACAAA+TGG - chr6_4:89844578-89844597 Msa1003030:three_prime_UTR 30.0%
! AGTAGTTTTTCATCTTCTTC+TGG + chr6_4:89844654-89844673 None:intergenic 30.0%
AAGAAGATGAAAAACTACTG+AGG - chr6_4:89844655-89844674 Msa1003030:exon 30.0%
CATATAACAAAGTATGGTCA+TGG - chr6_4:89844678-89844697 Msa1003030:CDS 30.0%
ATTAATTTACCTGCTTGCTT+AGG + chr6_4:89844720-89844739 None:intergenic 30.0%
TATGCTAATGGAGATAGAAT+TGG + chr6_4:89844746-89844765 None:intergenic 30.0%
!!! CCCTTTTTTATTTTCTCCTA+TGG - chr6_4:89844988-89845007 Msa1003030:CDS 30.0%
! TTCATTTTCTTCTTACCAGA+TGG - chr6_4:89845103-89845122 Msa1003030:CDS 30.0%
TCATTGGATAGTAATATCTC+TGG + chr6_4:89845303-89845322 None:intergenic 30.0%
TTGAACTCTCTGATTTCAAA+AGG + chr6_4:89845332-89845351 None:intergenic 30.0%
! ATTTCCATTGCATATGCTTT+TGG + chr6_4:89845405-89845424 None:intergenic 30.0%
! AAAAGCATATGCAATGGAAA+TGG - chr6_4:89845404-89845423 Msa1003030:CDS 30.0%
TAATTTCCCATCAAATCTGA+GGG + chr6_4:89845474-89845493 None:intergenic 30.0%
ATAATTTCCCATCAAATCTG+AGG + chr6_4:89845475-89845494 None:intergenic 30.0%
CTACTAGTGTTTGAATCATT+TGG + chr6_4:89845540-89845559 None:intergenic 30.0%
TTGTTGCAGCAAAAAGAATT+AGG + chr6_4:89845657-89845676 None:intergenic 30.0%
ATCATACAGAAGAAGCTAAA+TGG - chr6_4:89845784-89845803 Msa1003030:CDS 30.0%
TCATACAGAAGAAGCTAAAT+GGG - chr6_4:89845785-89845804 Msa1003030:CDS 30.0%
TCAAAACCCTATCTTAATGT+TGG - chr6_4:89845827-89845846 Msa1003030:intron 30.0%
TCTGGTACAAAGTTCATTAA+TGG + chr6_4:89845885-89845904 None:intergenic 30.0%
! AACTTTGTACCAGATAGTTT+TGG - chr6_4:89845891-89845910 Msa1003030:intron 30.0%
AAAATAGCTCCAAAACTATC+TGG + chr6_4:89845903-89845922 None:intergenic 30.0%
!! AACAGTGTGAAGATTTTTAG+AGG - chr6_4:89846041-89846060 Msa1003030:CDS 30.0%
!!! TTTTTTCTTCTATGAGTGTG+GGG - chr6_4:89846210-89846229 Msa1003030:five_prime_UTR 30.0%
TGAGAAGAAAAATGAAGCAA+TGG + chr6_4:89844562-89844581 None:intergenic 30.0%
!! TGCTTCATTTTTCTTCTCAT+AGG - chr6_4:89844563-89844582 Msa1003030:three_prime_UTR 30.0%
CTCATAGGAAAATTCACAAA+TGG - chr6_4:89844578-89844597 Msa1003030:three_prime_UTR 30.0%
! AGTAGTTTTTCATCTTCTTC+TGG + chr6_4:89844654-89844673 None:intergenic 30.0%
AAGAAGATGAAAAACTACTG+AGG - chr6_4:89844655-89844674 Msa1003030:exon 30.0%
CATATAACAAAGTATGGTCA+TGG - chr6_4:89844678-89844697 Msa1003030:CDS 30.0%
ATTAATTTACCTGCTTGCTT+AGG + chr6_4:89844720-89844739 None:intergenic 30.0%
TATGCTAATGGAGATAGAAT+TGG + chr6_4:89844746-89844765 None:intergenic 30.0%
!!! CCCTTTTTTATTTTCTCCTA+TGG - chr6_4:89844988-89845007 Msa1003030:CDS 30.0%
! TTCATTTTCTTCTTACCAGA+TGG - chr6_4:89845103-89845122 Msa1003030:CDS 30.0%
TCATTGGATAGTAATATCTC+TGG + chr6_4:89845303-89845322 None:intergenic 30.0%
TTGAACTCTCTGATTTCAAA+AGG + chr6_4:89845332-89845351 None:intergenic 30.0%
! ATTTCCATTGCATATGCTTT+TGG + chr6_4:89845405-89845424 None:intergenic 30.0%
! AAAAGCATATGCAATGGAAA+TGG - chr6_4:89845404-89845423 Msa1003030:CDS 30.0%
TAATTTCCCATCAAATCTGA+GGG + chr6_4:89845474-89845493 None:intergenic 30.0%
ATAATTTCCCATCAAATCTG+AGG + chr6_4:89845475-89845494 None:intergenic 30.0%
CTACTAGTGTTTGAATCATT+TGG + chr6_4:89845540-89845559 None:intergenic 30.0%
TTGTTGCAGCAAAAAGAATT+AGG + chr6_4:89845657-89845676 None:intergenic 30.0%
ATCATACAGAAGAAGCTAAA+TGG - chr6_4:89845784-89845803 Msa1003030:CDS 30.0%
TCATACAGAAGAAGCTAAAT+GGG - chr6_4:89845785-89845804 Msa1003030:CDS 30.0%
TCAAAACCCTATCTTAATGT+TGG - chr6_4:89845827-89845846 Msa1003030:intron 30.0%
TCTGGTACAAAGTTCATTAA+TGG + chr6_4:89845885-89845904 None:intergenic 30.0%
! AACTTTGTACCAGATAGTTT+TGG - chr6_4:89845891-89845910 Msa1003030:intron 30.0%
AAAATAGCTCCAAAACTATC+TGG + chr6_4:89845903-89845922 None:intergenic 30.0%
!! AACAGTGTGAAGATTTTTAG+AGG - chr6_4:89846041-89846060 Msa1003030:CDS 30.0%
!!! TTTTTTCTTCTATGAGTGTG+GGG - chr6_4:89846210-89846229 Msa1003030:five_prime_UTR 30.0%
TTAGTGATAGAGAGAATCGA+AGG + chr6_4:89844538-89844557 None:intergenic 35.0%
AGGAAAATTCACAAATGGGA+AGG - chr6_4:89844583-89844602 Msa1003030:three_prime_UTR 35.0%
CTGAGGCATATAACAAAGTA+TGG - chr6_4:89844672-89844691 Msa1003030:CDS 35.0%
TTATCAGGTTTGCAAAGATG+TGG - chr6_4:89844826-89844845 Msa1003030:CDS 35.0%
TTGAACTTCATGCAGTACTA+GGG - chr6_4:89844935-89844954 Msa1003030:CDS 35.0%
TTATTCTCAACCTCAGACAA+TGG + chr6_4:89845243-89845262 None:intergenic 35.0%
! TTGTCTGAGGTTGAGAATAA+TGG - chr6_4:89845243-89845262 Msa1003030:CDS 35.0%
! TTCACCAAAAGCATATGCAA+TGG - chr6_4:89845398-89845417 Msa1003030:CDS 35.0%
ATTCAACCCTCAGATTTGAT+GGG - chr6_4:89845465-89845484 Msa1003030:CDS 35.0%
CAAACACTAGTAGTAACCAT+TGG - chr6_4:89845547-89845566 Msa1003030:intron 35.0%
ATGGTTGTTGATGTTGATGT+GGG + chr6_4:89845627-89845646 None:intergenic 35.0%
TCTGTAGAAACATTGTCAGA+GGG + chr6_4:89845693-89845712 None:intergenic 35.0%
! AACAATTTTTCTTCTTGGGG+AGG - chr6_4:89845750-89845769 Msa1003030:CDS 35.0%
CAGAAGCCAACATTAAGATA+GGG + chr6_4:89845836-89845855 None:intergenic 35.0%
TCAGAAGCCAACATTAAGAT+AGG + chr6_4:89845837-89845856 None:intergenic 35.0%
GGTACAAAGTTCATTAATGG+AGG + chr6_4:89845882-89845901 None:intergenic 35.0%
TCTTGTTCTTGCTTTGTATG+AGG + chr6_4:89845927-89845946 None:intergenic 35.0%
GAGATATGTGAACATGATTG+TGG - chr6_4:89846009-89846028 Msa1003030:CDS 35.0%
TTAGTGATAGAGAGAATCGA+AGG + chr6_4:89844538-89844557 None:intergenic 35.0%
AGGAAAATTCACAAATGGGA+AGG - chr6_4:89844583-89844602 Msa1003030:three_prime_UTR 35.0%
CTGAGGCATATAACAAAGTA+TGG - chr6_4:89844672-89844691 Msa1003030:CDS 35.0%
TTATCAGGTTTGCAAAGATG+TGG - chr6_4:89844826-89844845 Msa1003030:CDS 35.0%
TTGAACTTCATGCAGTACTA+GGG - chr6_4:89844935-89844954 Msa1003030:CDS 35.0%
TTATTCTCAACCTCAGACAA+TGG + chr6_4:89845243-89845262 None:intergenic 35.0%
! TTGTCTGAGGTTGAGAATAA+TGG - chr6_4:89845243-89845262 Msa1003030:CDS 35.0%
! TTCACCAAAAGCATATGCAA+TGG - chr6_4:89845398-89845417 Msa1003030:CDS 35.0%
ATTCAACCCTCAGATTTGAT+GGG - chr6_4:89845465-89845484 Msa1003030:CDS 35.0%
CAAACACTAGTAGTAACCAT+TGG - chr6_4:89845547-89845566 Msa1003030:intron 35.0%
ATGGTTGTTGATGTTGATGT+GGG + chr6_4:89845627-89845646 None:intergenic 35.0%
TCTGTAGAAACATTGTCAGA+GGG + chr6_4:89845693-89845712 None:intergenic 35.0%
! AACAATTTTTCTTCTTGGGG+AGG - chr6_4:89845750-89845769 Msa1003030:CDS 35.0%
CAGAAGCCAACATTAAGATA+GGG + chr6_4:89845836-89845855 None:intergenic 35.0%
TCAGAAGCCAACATTAAGAT+AGG + chr6_4:89845837-89845856 None:intergenic 35.0%
GGTACAAAGTTCATTAATGG+AGG + chr6_4:89845882-89845901 None:intergenic 35.0%
TCTTGTTCTTGCTTTGTATG+AGG + chr6_4:89845927-89845946 None:intergenic 35.0%
GAGATATGTGAACATGATTG+TGG - chr6_4:89846009-89846028 Msa1003030:CDS 35.0%
ACTTCTCTCTCATGAGTCAT+AGG - chr6_4:89844456-89844475 Msa1003030:three_prime_UTR 40.0%
TGATAGAGAGAATCGAAGGA+AGG + chr6_4:89844534-89844553 None:intergenic 40.0%
GTTGTTACAAGCAGAAGCTT+AGG - chr6_4:89844613-89844632 Msa1003030:three_prime_UTR 40.0%
TACAAGCAGAAGCTTAGGAA+AGG - chr6_4:89844618-89844637 Msa1003030:three_prime_UTR 40.0%
AGAAGCTTAGGAAAGGTCTA+TGG - chr6_4:89844625-89844644 Msa1003030:three_prime_UTR 40.0%
CAAAGTATGGTCATGGATGT+TGG - chr6_4:89844685-89844704 Msa1003030:CDS 40.0%
AAGAGGAACATTCTCACAAG+AGG - chr6_4:89844897-89844916 Msa1003030:CDS 40.0%
GTTGAACTTCATGCAGTACT+AGG - chr6_4:89844934-89844953 Msa1003030:CDS 40.0%
TTCATGCAGTACTAGGGAAT+AGG - chr6_4:89844941-89844960 Msa1003030:CDS 40.0%
TTTCTCCTATGGTTAGGCAA+CGG - chr6_4:89844999-89845018 Msa1003030:CDS 40.0%
TACCAGATGGTCTCAAATTG+CGG - chr6_4:89845116-89845135 Msa1003030:CDS 40.0%
CTTGTTTGAAGAAGAGACTG+AGG - chr6_4:89845187-89845206 Msa1003030:CDS 40.0%
AAGAAGAGACTGAGGCAAAA+AGG - chr6_4:89845195-89845214 Msa1003030:CDS 40.0%
GACAATGGTTTATGAGTCAC+AGG + chr6_4:89845228-89845247 None:intergenic 40.0%
GACTCATAAACCATTGTCTG+AGG - chr6_4:89845230-89845249 Msa1003030:CDS 40.0%
! TGAGGTTGAGAATAATGGAG+AGG - chr6_4:89845248-89845267 Msa1003030:CDS 40.0%
GCATATGCAATGGAAATGGA+AGG - chr6_4:89845408-89845427 Msa1003030:CDS 40.0%
CATTCAACCCTCAGATTTGA+TGG - chr6_4:89845464-89845483 Msa1003030:CDS 40.0%
!! AACCATTGGTTCAACCAAAC+TGG - chr6_4:89845561-89845580 Msa1003030:intron 40.0%
TTCCAGTTTGGTTGAACCAA+TGG + chr6_4:89845566-89845585 None:intergenic 40.0%
CATGGTTGTTGATGTTGATG+TGG + chr6_4:89845628-89845647 None:intergenic 40.0%
CTCTGTAGAAACATTGTCAG+AGG + chr6_4:89845694-89845713 None:intergenic 40.0%
TCTGAGTTTCTGAATGTCCT+TGG + chr6_4:89845979-89845998 None:intergenic 40.0%
! CAGAAACTCAGAGAAGCTTT+TGG - chr6_4:89845987-89846006 Msa1003030:CDS 40.0%
TGGGGTAGAATTGGTGAATA+AGG - chr6_4:89846228-89846247 Msa1003030:five_prime_UTR 40.0%
ACTTCTCTCTCATGAGTCAT+AGG - chr6_4:89844456-89844475 Msa1003030:three_prime_UTR 40.0%
TGATAGAGAGAATCGAAGGA+AGG + chr6_4:89844534-89844553 None:intergenic 40.0%
GTTGTTACAAGCAGAAGCTT+AGG - chr6_4:89844613-89844632 Msa1003030:three_prime_UTR 40.0%
TACAAGCAGAAGCTTAGGAA+AGG - chr6_4:89844618-89844637 Msa1003030:three_prime_UTR 40.0%
AGAAGCTTAGGAAAGGTCTA+TGG - chr6_4:89844625-89844644 Msa1003030:three_prime_UTR 40.0%
CAAAGTATGGTCATGGATGT+TGG - chr6_4:89844685-89844704 Msa1003030:CDS 40.0%
AAGAGGAACATTCTCACAAG+AGG - chr6_4:89844897-89844916 Msa1003030:CDS 40.0%
GTTGAACTTCATGCAGTACT+AGG - chr6_4:89844934-89844953 Msa1003030:CDS 40.0%
TTCATGCAGTACTAGGGAAT+AGG - chr6_4:89844941-89844960 Msa1003030:CDS 40.0%
TTTCTCCTATGGTTAGGCAA+CGG - chr6_4:89844999-89845018 Msa1003030:CDS 40.0%
TACCAGATGGTCTCAAATTG+CGG - chr6_4:89845116-89845135 Msa1003030:CDS 40.0%
CTTGTTTGAAGAAGAGACTG+AGG - chr6_4:89845187-89845206 Msa1003030:CDS 40.0%
AAGAAGAGACTGAGGCAAAA+AGG - chr6_4:89845195-89845214 Msa1003030:CDS 40.0%
GACAATGGTTTATGAGTCAC+AGG + chr6_4:89845228-89845247 None:intergenic 40.0%
GACTCATAAACCATTGTCTG+AGG - chr6_4:89845230-89845249 Msa1003030:CDS 40.0%
! TGAGGTTGAGAATAATGGAG+AGG - chr6_4:89845248-89845267 Msa1003030:CDS 40.0%
GCATATGCAATGGAAATGGA+AGG - chr6_4:89845408-89845427 Msa1003030:CDS 40.0%
CATTCAACCCTCAGATTTGA+TGG - chr6_4:89845464-89845483 Msa1003030:CDS 40.0%
!! AACCATTGGTTCAACCAAAC+TGG - chr6_4:89845561-89845580 Msa1003030:intron 40.0%
TTCCAGTTTGGTTGAACCAA+TGG + chr6_4:89845566-89845585 None:intergenic 40.0%
CATGGTTGTTGATGTTGATG+TGG + chr6_4:89845628-89845647 None:intergenic 40.0%
CTCTGTAGAAACATTGTCAG+AGG + chr6_4:89845694-89845713 None:intergenic 40.0%
TCTGAGTTTCTGAATGTCCT+TGG + chr6_4:89845979-89845998 None:intergenic 40.0%
! CAGAAACTCAGAGAAGCTTT+TGG - chr6_4:89845987-89846006 Msa1003030:CDS 40.0%
TGGGGTAGAATTGGTGAATA+AGG - chr6_4:89846228-89846247 Msa1003030:five_prime_UTR 40.0%
GTGAAGTGGCAGCTAAGAAA+AGG + chr6_4:89844508-89844527 None:intergenic 45.0%
TCGAAGGAAGGAAAGTGAAG+TGG + chr6_4:89844522-89844541 None:intergenic 45.0%
AGTTCAGTACCTAAGCAAGC+AGG - chr6_4:89844708-89844727 Msa1003030:CDS 45.0%
AAAGATGTGGTAAGAGCTGC+AGG - chr6_4:89844839-89844858 Msa1003030:CDS 45.0%
CGAGGATTCGATCTCACTAT+CGG - chr6_4:89845036-89845055 Msa1003030:CDS 45.0%
TCAAATTGCGGCGCAATTAC+CGG - chr6_4:89845128-89845147 Msa1003030:CDS 45.0%
ATTTCATTGTCTGTCCTCCC+CGG + chr6_4:89845150-89845169 None:intergenic 45.0%
TTCTTCTTGGGGAGGATTGA+TGG - chr6_4:89845758-89845777 Msa1003030:CDS 45.0%
CTATGAGTGTGGGGTAGAAT+TGG - chr6_4:89846219-89846238 Msa1003030:five_prime_UTR 45.0%
GTGAAGTGGCAGCTAAGAAA+AGG + chr6_4:89844508-89844527 None:intergenic 45.0%
TCGAAGGAAGGAAAGTGAAG+TGG + chr6_4:89844522-89844541 None:intergenic 45.0%
AGTTCAGTACCTAAGCAAGC+AGG - chr6_4:89844708-89844727 Msa1003030:CDS 45.0%
AAAGATGTGGTAAGAGCTGC+AGG - chr6_4:89844839-89844858 Msa1003030:CDS 45.0%
CGAGGATTCGATCTCACTAT+CGG - chr6_4:89845036-89845055 Msa1003030:CDS 45.0%
TCAAATTGCGGCGCAATTAC+CGG - chr6_4:89845128-89845147 Msa1003030:CDS 45.0%
ATTTCATTGTCTGTCCTCCC+CGG + chr6_4:89845150-89845169 None:intergenic 45.0%
TTCTTCTTGGGGAGGATTGA+TGG - chr6_4:89845758-89845777 Msa1003030:CDS 45.0%
CTATGAGTGTGGGGTAGAAT+TGG - chr6_4:89846219-89846238 Msa1003030:five_prime_UTR 45.0%
TCACTCCGTTGCCTAACCAT+AGG + chr6_4:89845007-89845026 None:intergenic 50.0%
GGTTAGGCAACGGAGTGATA+AGG - chr6_4:89845009-89845028 Msa1003030:CDS 50.0%
ACGGAGTGATAAGGAAGTCG+AGG - chr6_4:89845018-89845037 Msa1003030:CDS 50.0%
CAAATTGCGGCGCAATTACC+GGG - chr6_4:89845129-89845148 Msa1003030:CDS 50.0%
AAATTGCGGCGCAATTACCG+GGG - chr6_4:89845130-89845149 Msa1003030:CDS 50.0%
TCACTCCGTTGCCTAACCAT+AGG + chr6_4:89845007-89845026 None:intergenic 50.0%
GGTTAGGCAACGGAGTGATA+AGG - chr6_4:89845009-89845028 Msa1003030:CDS 50.0%
ACGGAGTGATAAGGAAGTCG+AGG - chr6_4:89845018-89845037 Msa1003030:CDS 50.0%
CAAATTGCGGCGCAATTACC+GGG - chr6_4:89845129-89845148 Msa1003030:CDS 50.0%
AAATTGCGGCGCAATTACCG+GGG - chr6_4:89845130-89845149 Msa1003030:CDS 50.0%
GTGGTAAGAGCTGCAGGCTA+AGG - chr6_4:89844845-89844864 Msa1003030:CDS 55.0%
GTAAGAGCTGCAGGCTAAGG+TGG - chr6_4:89844848-89844867 Msa1003030:CDS 55.0%
! CGCCGCAATTTGAGACCATC+TGG + chr6_4:89845121-89845140 None:intergenic 55.0%
GTGGTAAGAGCTGCAGGCTA+AGG - chr6_4:89844845-89844864 Msa1003030:CDS 55.0%
GTAAGAGCTGCAGGCTAAGG+TGG - chr6_4:89844848-89844867 Msa1003030:CDS 55.0%
! CGCCGCAATTTGAGACCATC+TGG + chr6_4:89845121-89845140 None:intergenic 55.0%
TTGCGGCGCAATTACCGGGG+AGG - chr6_4:89845133-89845152 Msa1003030:CDS 65.0%
TTGCGGCGCAATTACCGGGG+AGG - chr6_4:89845133-89845152 Msa1003030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 89844381 89846295 89844381 ID=Msa1003030;Name=Msa1003030
chr6_4 mRNA 89844381 89846295 89844381 ID=Msa1003030-mRNA-1;Parent=Msa1003030;Name=Msa1003030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=216|1|1|1|1|1|3|276|386
chr6_4 exon 89844381 89845554 89844381 ID=Msa1003030-mRNA-1:exon:17494;Parent=Msa1003030-mRNA-1
chr6_4 exon 89845714 89845843 89845714 ID=Msa1003030-mRNA-1:exon:17493;Parent=Msa1003030-mRNA-1
chr6_4 exon 89845947 89846295 89845947 ID=Msa1003030-mRNA-1:exon:17492;Parent=Msa1003030-mRNA-1
chr6_4 five_prime_UTR 89846080 89846295 89846080 ID=Msa1003030-mRNA-1:five_prime_utr;Parent=Msa1003030-mRNA-1
chr6_4 CDS 89845947 89846079 89845947 ID=Msa1003030-mRNA-1:cds;Parent=Msa1003030-mRNA-1
chr6_4 CDS 89845714 89845843 89845714 ID=Msa1003030-mRNA-1:cds;Parent=Msa1003030-mRNA-1
chr6_4 CDS 89844657 89845554 89844657 ID=Msa1003030-mRNA-1:cds;Parent=Msa1003030-mRNA-1
chr6_4 three_prime_UTR 89844381 89844656 89844381 ID=Msa1003030-mRNA-1:three_prime_utr;Parent=Msa1003030-mRNA-1
Gene Sequence

>Msa1003030

ATGGGAAGGCACTCATGTTGTTACAAGCAGAAGCTTAGGAAAGGTCTATGGTCACCAGAAGAAGATGAAAAACTACTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGCTGCAGGCTAAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCGGCGCAATTACCGGGGAGGACAGACAATGAAATAAAGAATCTATGGAATTCTTGTTTGAAGAAGAGACTGAGGCAAAAAGGTATAGATCCTGTGACTCATAAACCATTGTCTGAGGTTGAGAATAATGGAGAGGAAAATGCTAATAAGAGTCAAGAGAAAGCACCAGAGATATTACTATCCAATGAATTGAACCTTTTGAAATCAGAGAGTTCAAAATCTGATGCAGCTTCTAGCTATGAGCAAAGAACAACATCTTCAATTTCACCAAAAGCATATGCAATGGAAATGGAAGGTTCTTGCAACAAAGAGTTTTTCATAGATAGGTTCATTCAACCCTCAGATTTGATGGGAAATTATCCCCTTCAAATGAGTTATACAAACACTGAAAATGATTGTTTACCAAATGATTCAAACACTAGTAGTAACCATTGGTTCAACCAAACTGGAAAATCTTTTGATATGAATTCTGATCAGTTTCATTTCAATCCCACATCAACATCAACAACCATGTTTCTTCCTAATTCTTTTTGCTGCAACAATTCTCTTGATATTCCCTCTGACAATGTTTCTACAGAGATGAGAACTAGCAGCAGCACCTTAAACTTACATAACAACAATTTTTCTTCTTGGGGAGGATTGATGGAAAATCATACAGAAGAAGCTAAATGGGATAATAACAATAACTACTTTCAAAACCCTATCTTAATGTTGGCTTCTGAGTCTTTATGCAATGAGATAAAGCCTCCATTAATGAACTTTGTACCAGATAGTTTTGGAGCTATTTTACCTCATACAAAGCAAGAACAAGAACAGTCACAAACAACTTCTAATATATTTTCCAAGGACATTCAGAAACTCAGAGAAGCTTTTGGAGATATGTGA
Protein sequence

>Msa1003030

MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKGIDPVTHKPLSEVENNGEENANKSQEKAPEILLSNELNLLKSESSKSDAASSYEQRTTSSISPKAYAMEMEGSCNKEFFIDRFIQPSDLMGNYPLQMSYTNTENDCLPNDSNTSSNHWFNQTGKSFDMNSDQFHFNPTSTSTTMFLPNSFCCNNSLDIPSDNVSTEMRTSSSTLNLHNNNFSSWGGLMENHTEEAKWDNNNNYFQNPILMLASESLCNEIKPPLMNFVPDSFGAILPHTKQEQEQSQTTSNIFSKDIQKLREAFGDM*