Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0549470 | 0.802535 | 5.358377e-49 | -8.615850e-47 |
| Msa0003890 | Msa0549470 | 0.803494 | 3.394712e-49 | -8.615850e-47 |
| Msa0025730 | Msa0549470 | 0.830637 | 2.625880e-55 | -8.615850e-47 |
| Msa0032260 | Msa0549470 | 0.810108 | 1.357743e-50 | -8.615850e-47 |
| Msa0084380 | Msa0549470 | 0.801896 | 7.253640e-49 | -8.615850e-47 |
| Msa0090360 | Msa0549470 | 0.801004 | 1.104844e-48 | -8.615850e-47 |
| Msa0090520 | Msa0549470 | 0.817390 | 3.379969e-52 | -8.615850e-47 |
| Msa0137990 | Msa0549470 | 0.819875 | 9.232248e-53 | -8.615850e-47 |
| Msa0140820 | Msa0549470 | 0.817361 | 3.431705e-52 | -8.615850e-47 |
| Msa0145440 | Msa0549470 | 0.805357 | 1.388085e-49 | -8.615850e-47 |
| Msa0183900 | Msa0549470 | 0.813446 | 2.549196e-51 | -8.615850e-47 |
| Msa0189290 | Msa0549470 | 0.806611 | 7.561247e-50 | -8.615850e-47 |
| Msa0231650 | Msa0549470 | 0.819783 | 9.687123e-53 | -8.615850e-47 |
| Msa0385580 | Msa0549470 | 0.833303 | 5.761456e-56 | -8.615850e-47 |
| Msa0390730 | Msa0549470 | 0.800248 | 1.575837e-48 | -8.615850e-47 |
| Msa0291500 | Msa0549470 | 0.808720 | 2.696141e-50 | -8.615850e-47 |
| Msa0300120 | Msa0549470 | 0.809983 | 1.445027e-50 | -8.615850e-47 |
| Msa0493480 | Msa0549470 | 0.832969 | 6.979850e-56 | -8.615850e-47 |
| Msa0518390 | Msa0549470 | 0.804221 | 2.397284e-49 | -8.615850e-47 |
| Msa0541860 | Msa0549470 | 0.801977 | 6.978863e-49 | -8.615850e-47 |
| Msa0549470 | Msa0604510 | 0.801664 | 8.091085e-49 | -8.615850e-47 |
| Msa0549470 | Msa0607050 | 0.822998 | 1.755118e-53 | -8.615850e-47 |
| Msa0549470 | Msa0644840 | 0.801891 | 7.268389e-49 | -8.615850e-47 |
| Msa0549470 | Msa0649490 | 0.823203 | 1.572008e-53 | -8.615850e-47 |
| Msa0549470 | Msa0662500 | 0.819883 | 9.188987e-53 | -8.615850e-47 |
| Msa0549470 | Msa0689260 | 0.814854 | 1.245947e-51 | -8.615850e-47 |
| Msa0549470 | Msa0690150 | 0.829531 | 4.887439e-55 | -8.615850e-47 |
| Msa0549470 | Msa0695100 | 0.808662 | 2.773885e-50 | -8.615850e-47 |
| Msa0549470 | Msa0709400 | 0.800178 | 1.627983e-48 | -8.615850e-47 |
| Msa0549470 | Msa0709500 | 0.825027 | 5.864560e-54 | -8.615850e-47 |
| Msa0549470 | Msa0711780 | 0.808579 | 2.889650e-50 | -8.615850e-47 |
| Msa0549470 | Msa0750880 | 0.832064 | 1.169927e-55 | -8.615850e-47 |
| Msa0549470 | Msa0788850 | 0.801873 | 7.332339e-49 | -8.615850e-47 |
| Msa0549470 | Msa0790850 | 0.819077 | 1.403608e-52 | -8.615850e-47 |
| Msa0549470 | Msa0794670 | 0.818029 | 2.426169e-52 | -8.615850e-47 |
| Msa0549470 | Msa0796530 | 0.815905 | 7.276597e-52 | -8.615850e-47 |
| Msa0549470 | Msa0808270 | 0.827787 | 1.289745e-54 | -8.615850e-47 |
| Msa0549470 | Msa0871270 | 0.803443 | 3.477451e-49 | -8.615850e-47 |
| Msa0549470 | Msa0902760 | 0.842281 | 2.846271e-58 | -8.615850e-47 |
| Msa0549470 | Msa0968590 | 0.847780 | 9.310686e-60 | -8.615850e-47 |
| Msa0549470 | Msa1006840 | 0.807579 | 4.718209e-50 | -8.615850e-47 |
| Msa0549470 | Msa1013400 | 0.846547 | 2.028296e-59 | -8.615850e-47 |
| Msa0549470 | Msa1051880 | 0.827764 | 1.306308e-54 | -8.615850e-47 |
| Msa0549470 | Msa1079590 | 0.810960 | 8.889247e-51 | -8.615850e-47 |
| Msa0549470 | Msa1081150 | 0.801593 | 8.369106e-49 | -8.615850e-47 |
| Msa0549470 | Msa1093530 | 0.845064 | 5.125809e-59 | -8.615850e-47 |
| Msa0549470 | Msa1104140 | 0.800865 | 1.179145e-48 | -8.615850e-47 |
| Msa0549470 | Msa1109680 | 0.800788 | 1.222577e-48 | -8.615850e-47 |
| Msa0549470 | Msa1123380 | 0.800490 | 1.406238e-48 | -8.615850e-47 |
| Msa0549470 | Msa1125760 | 0.815597 | 8.521914e-52 | -8.615850e-47 |
| Msa0549470 | Msa1127890 | 0.810882 | 9.241677e-51 | -8.615850e-47 |
| Msa0549470 | Msa1165940 | 0.816575 | 5.152085e-52 | -8.615850e-47 |
| Msa0549470 | Msa1168160 | 0.807631 | 4.599252e-50 | -8.615850e-47 |
| Msa0549470 | Msa1171360 | 0.826246 | 3.013821e-54 | -8.615850e-47 |
| Msa0549470 | Msa1207270 | 0.834340 | 3.171005e-56 | -8.615850e-47 |
| Msa0549470 | Msa1218600 | 0.823918 | 1.069116e-53 | -8.615850e-47 |
| Msa0549470 | Msa1227400 | 0.813086 | 3.058855e-51 | -8.615850e-47 |
| Msa0549470 | Msa1253020 | 0.807251 | 5.536992e-50 | -8.615850e-47 |
| Msa0549470 | Msa1255040 | -0.810663 | 1.030652e-50 | -8.615850e-47 |
| Msa0549470 | Msa1267430 | 0.840522 | 8.265484e-58 | -8.615850e-47 |
| Msa0549470 | Msa1353060 | 0.820764 | 5.774216e-53 | -8.615850e-47 |
| Msa0549470 | Msa1353980 | 0.810103 | 1.361301e-50 | -8.615850e-47 |
| Msa0549470 | Msa1358250 | 0.817629 | 2.985782e-52 | -8.615850e-47 |
| Msa0549470 | Msa1361100 | 0.802420 | 5.657995e-49 | -8.615850e-47 |
| Msa0549470 | Msa1374120 | 0.809454 | 1.877595e-50 | -8.615850e-47 |
| Msa0549470 | Msa1382620 | 0.821242 | 4.479742e-53 | -8.615850e-47 |
| Msa0549470 | Msa1386780 | 0.820518 | 6.576079e-53 | -8.615850e-47 |
| Msa0549470 | Msa1391410 | 0.802934 | 4.431432e-49 | -8.615850e-47 |
| Msa0549470 | Msa1392780 | 0.801464 | 8.894683e-49 | -8.615850e-47 |
| Msa0549470 | Msa1394290 | 0.801095 | 1.058455e-48 | -8.615850e-47 |
| Msa0549470 | Msa1432420 | 0.821171 | 4.652232e-53 | -8.615850e-47 |
| Msa0549470 | Msa1433390 | 0.802353 | 5.842009e-49 | -8.615850e-47 |
| Msa0549470 | Msa1451160 | 0.809034 | 2.309806e-50 | -8.615850e-47 |
| Msa0549470 | Msa1457910 | 0.818093 | 2.346863e-52 | -8.615850e-47 |
| Msa0549470 | Msa1457920 | 0.825356 | 4.900544e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACATTAGCTTGAAAATT+TGG | 0.104883 | 4_1:+44642562 | Msa0549470:three_prime_UTR |
| CACTGTTCAAAGCAGTTTAT+TGG | 0.219080 | 4_1:+44641340 | Msa0549470:CDS |
| AAGCATTTATGTTTCGGAAT+TGG | 0.256821 | 4_1:-44642404 | None:intergenic |
| ATCCCTTTCTCATGCTTTCC+CGG | 0.280060 | 4_1:+44641052 | Msa0549470:CDS |
| AGACATTAGCTTGAAAATTT+GGG | 0.284952 | 4_1:+44642563 | Msa0549470:three_prime_UTR |
| TAAAACAAGCATTTATGTTT+CGG | 0.317059 | 4_1:-44642410 | None:intergenic |
| AGCATTTATGTTTCGGAATT+GGG | 0.319096 | 4_1:-44642403 | None:intergenic |
| CAGGAGGATATGTGCTGCTT+GGG | 0.338927 | 4_1:+44642205 | Msa0549470:CDS |
| GTCAACCTTCTCAATATATC+TGG | 0.343110 | 4_1:-44641026 | None:intergenic |
| GAACAGTGAACAGTTGTATC+TGG | 0.348752 | 4_1:-44641325 | None:intergenic |
| GTGTCATCAGTGAAGTTAAA+TGG | 0.430107 | 4_1:-44641004 | None:intergenic |
| ATCATGTCCTCACAATTCTC+AGG | 0.435437 | 4_1:-44642268 | None:intergenic |
| TAATTGGTGCAGTGTTCGTC+AGG | 0.437658 | 4_1:+44642186 | Msa0549470:intron |
| GGAATGGTGTGGCAGATTCT+TGG | 0.460982 | 4_1:-44640971 | None:intergenic |
| ATGCCAATGGCAAACAGAAC+GGG | 0.461965 | 4_1:-44641367 | None:intergenic |
| TCAGGAGGATATGTGCTGCT+TGG | 0.465793 | 4_1:+44642204 | Msa0549470:CDS |
| TTACCCGTTCTGTTTGCCAT+TGG | 0.483594 | 4_1:+44641364 | Msa0549470:CDS |
| TTGTATCTGGAAGTGTGAAC+TGG | 0.489553 | 4_1:-44641312 | None:intergenic |
| CGTTCTGTTTGCCATTGGCA+TGG | 0.496259 | 4_1:+44641369 | Msa0549470:CDS |
| CAACCTGTCTTAGCGTCCTT+AGG | 0.502343 | 4_1:+44641289 | Msa0549470:CDS |
| TACCCGGGAAAGCATGAGAA+AGG | 0.503325 | 4_1:-44641055 | None:intergenic |
| TCCCTTTCTCATGCTTTCCC+GGG | 0.512443 | 4_1:+44641053 | Msa0549470:CDS |
| GATTCTTGGACGACCGACAT+AGG | 0.531639 | 4_1:-44640957 | None:intergenic |
| AGGAGGATATGTGCTGCTTG+GGG | 0.536345 | 4_1:+44642206 | Msa0549470:CDS |
| TGGCCTAAGGACGCTAAGAC+AGG | 0.548449 | 4_1:-44641292 | None:intergenic |
| TTAAAACGAAAGGACAGGTA+AGG | 0.550044 | 4_1:+44642491 | Msa0549470:three_prime_UTR |
| TGGAAGTGTGAACTGGCCTA+AGG | 0.555407 | 4_1:-44641305 | None:intergenic |
| GAGACAACTCAAGAGACAAA+AGG | 0.556997 | 4_1:-44641234 | None:intergenic |
| CCTTCACAGATTTCCTATGT+CGG | 0.568994 | 4_1:+44640944 | Msa0549470:CDS |
| ACCCGGGAAAGCATGAGAAA+GGG | 0.572015 | 4_1:-44641054 | None:intergenic |
| GGAGGATATGTGCTGCTTGG+GGG | 0.577064 | 4_1:+44642207 | Msa0549470:CDS |
| CATGCCAATGGCAAACAGAA+CGG | 0.597264 | 4_1:-44641368 | None:intergenic |
| TCATGTCCTCACAATTCTCA+GGG | 0.601511 | 4_1:-44642267 | None:intergenic |
| TTGGTGCAGTGTTCGTCAGG+AGG | 0.602248 | 4_1:+44642189 | Msa0549470:intron |
| AAATGGTGGACACGGTGGAA+TGG | 0.619409 | 4_1:-44640987 | None:intergenic |
| ATGTAACCCTGAGAATTGTG+AGG | 0.633479 | 4_1:+44642261 | Msa0549470:exon |
| TCAATGTAGAAACATATGAA+CGG | 0.658084 | 4_1:-44642314 | None:intergenic |
| TCATCAGTGAAGTTAAATGG+TGG | 0.659594 | 4_1:-44641001 | None:intergenic |
| GTGGACACGGTGGAATGGTG+TGG | 0.665435 | 4_1:-44640982 | None:intergenic |
| GTGAAGTTAAATGGTGGACA+CGG | 0.671868 | 4_1:-44640995 | None:intergenic |
| TGACACCAGATATATTGAGA+AGG | 0.672181 | 4_1:+44641021 | Msa0549470:CDS |
| GAGTGTGTGGACCATGCCAA+TGG | 0.674681 | 4_1:-44641380 | None:intergenic |
| CCGACATAGGAAATCTGTGA+AGG | 0.676557 | 4_1:-44640944 | None:intergenic |
| AAGTTAAATGGTGGACACGG+TGG | 0.677102 | 4_1:-44640992 | None:intergenic |
| ACAACTCAAGAGACAAAAGG+TGG | 0.702578 | 4_1:-44641231 | None:intergenic |
| CTGTGAAGGAATGTCCACCA+TGG | 0.703385 | 4_1:-44640930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACAACTAACAAAAATAA+AGG | - | chr4_1:44642439-44642458 | None:intergenic | 15.0% |
| !! | ATTACAACTAACAAAAATAA+AGG | - | chr4_1:44642439-44642458 | None:intergenic | 15.0% |
| !!! | ATTTATTTTCAGTGACAAAA+TGG | + | chr4_1:44641078-44641097 | Msa0549470:intron | 20.0% |
| !!! | GCAATGTTTTTATTTTTAAC+CGG | + | chr4_1:44642104-44642123 | Msa0549470:intron | 20.0% |
| !!! | TATCCTTACACTTTTTTAAT+TGG | + | chr4_1:44642170-44642189 | Msa0549470:intron | 20.0% |
| !! | TAAAACAAGCATTTATGTTT+CGG | - | chr4_1:44642413-44642432 | None:intergenic | 20.0% |
| !!! | TTTTAAAACTTTCATTTTGC+AGG | - | chr4_1:44642477-44642496 | None:intergenic | 20.0% |
| !!! | AATGAAAGTTTTAAAACGAA+AGG | + | chr4_1:44642481-44642500 | Msa0549470:three_prime_UTR | 20.0% |
| !!! | ATTTATTTTCAGTGACAAAA+TGG | + | chr4_1:44641078-44641097 | Msa0549470:intron | 20.0% |
| !!! | GCAATGTTTTTATTTTTAAC+CGG | + | chr4_1:44642104-44642123 | Msa0549470:intron | 20.0% |
| !!! | TATCCTTACACTTTTTTAAT+TGG | + | chr4_1:44642170-44642189 | Msa0549470:intron | 20.0% |
| !! | TAAAACAAGCATTTATGTTT+CGG | - | chr4_1:44642413-44642432 | None:intergenic | 20.0% |
| !!! | TTTTAAAACTTTCATTTTGC+AGG | - | chr4_1:44642477-44642496 | None:intergenic | 20.0% |
| !!! | AATGAAAGTTTTAAAACGAA+AGG | + | chr4_1:44642481-44642500 | Msa0549470:three_prime_UTR | 20.0% |
| !! | AATGGTAGTTGATTTATTGT+TGG | + | chr4_1:44641096-44641115 | Msa0549470:intron | 25.0% |
| !!! | CAATAATTTCAGTTTTGTCT+CGG | + | chr4_1:44641549-44641568 | Msa0549470:intron | 25.0% |
| !! | TTGAGTATGTTGATTATCTT+AGG | + | chr4_1:44641899-44641918 | Msa0549470:intron | 25.0% |
| !! | TGAGTATGTTGATTATCTTA+GGG | + | chr4_1:44641900-44641919 | Msa0549470:intron | 25.0% |
| !! | TTACTAGTGTTGAAGTTATA+TGG | - | chr4_1:44641951-44641970 | None:intergenic | 25.0% |
| ! | TGAGGACAAAAAAGAAAATA+CGG | - | chr4_1:44642012-44642031 | None:intergenic | 25.0% |
| ! | TCAATGTAGAAACATATGAA+CGG | - | chr4_1:44642317-44642336 | None:intergenic | 25.0% |
| !! | GAGAAATTTTTCATGATGTT+TGG | + | chr4_1:44642346-44642365 | Msa0549470:three_prime_UTR | 25.0% |
| !!! | AATTTTCAAGCTAATGTCTT+CGG | - | chr4_1:44642562-44642581 | None:intergenic | 25.0% |
| !! | AATGGTAGTTGATTTATTGT+TGG | + | chr4_1:44641096-44641115 | Msa0549470:intron | 25.0% |
| !!! | CAATAATTTCAGTTTTGTCT+CGG | + | chr4_1:44641549-44641568 | Msa0549470:intron | 25.0% |
| !! | TTGAGTATGTTGATTATCTT+AGG | + | chr4_1:44641899-44641918 | Msa0549470:intron | 25.0% |
| !! | TGAGTATGTTGATTATCTTA+GGG | + | chr4_1:44641900-44641919 | Msa0549470:intron | 25.0% |
| !! | TTACTAGTGTTGAAGTTATA+TGG | - | chr4_1:44641951-44641970 | None:intergenic | 25.0% |
| ! | TGAGGACAAAAAAGAAAATA+CGG | - | chr4_1:44642012-44642031 | None:intergenic | 25.0% |
| ! | TCAATGTAGAAACATATGAA+CGG | - | chr4_1:44642317-44642336 | None:intergenic | 25.0% |
| !! | GAGAAATTTTTCATGATGTT+TGG | + | chr4_1:44642346-44642365 | Msa0549470:three_prime_UTR | 25.0% |
| !!! | AATTTTCAAGCTAATGTCTT+CGG | - | chr4_1:44642562-44642581 | None:intergenic | 25.0% |
| TCACTGAAAATAAATTACCC+GGG | - | chr4_1:44641073-44641092 | None:intergenic | 30.0% | |
| GTCACTGAAAATAAATTACC+CGG | - | chr4_1:44641074-44641093 | None:intergenic | 30.0% | |
| ! | ATTGTTGGAAATGTTACTTG+AGG | + | chr4_1:44641111-44641130 | Msa0549470:intron | 30.0% |
| ! | TTGTTGGAAATGTTACTTGA+GGG | + | chr4_1:44641112-44641131 | Msa0549470:intron | 30.0% |
| ATTGATGCAAAATGTGAACT+GGG | - | chr4_1:44641515-44641534 | None:intergenic | 30.0% | |
| TATTGATGCAAAATGTGAAC+TGG | - | chr4_1:44641516-44641535 | None:intergenic | 30.0% | |
| ! | GTTCACATTTTGCATCAATA+TGG | + | chr4_1:44641516-44641535 | Msa0549470:intron | 30.0% |
| CCTAAATAGCACAAAATATG+GGG | - | chr4_1:44641628-44641647 | None:intergenic | 30.0% | |
| GCCTAAATAGCACAAAATAT+GGG | - | chr4_1:44641629-44641648 | None:intergenic | 30.0% | |
| TAACATATAGAAAACCAGCA+AGG | - | chr4_1:44641770-44641789 | None:intergenic | 30.0% | |
| ATGGAATATACAGAAAAGTG+AGG | - | chr4_1:44642030-44642049 | None:intergenic | 30.0% | |
| !! | TCTGTATATTCCATTTTTCC+TGG | + | chr4_1:44642036-44642055 | Msa0549470:intron | 30.0% |
| ! | GCACCAATTAAAAAAGTGTA+AGG | - | chr4_1:44642176-44642195 | None:intergenic | 30.0% |
| AGCATTTATGTTTCGGAATT+GGG | - | chr4_1:44642406-44642425 | None:intergenic | 30.0% | |
| AAGCATTTATGTTTCGGAAT+TGG | - | chr4_1:44642407-44642426 | None:intergenic | 30.0% | |
| !!! | AAGTTTTAAAACGAAAGGAC+AGG | + | chr4_1:44642486-44642505 | Msa0549470:three_prime_UTR | 30.0% |
| TCACTGAAAATAAATTACCC+GGG | - | chr4_1:44641073-44641092 | None:intergenic | 30.0% | |
| GTCACTGAAAATAAATTACC+CGG | - | chr4_1:44641074-44641093 | None:intergenic | 30.0% | |
| ! | ATTGTTGGAAATGTTACTTG+AGG | + | chr4_1:44641111-44641130 | Msa0549470:intron | 30.0% |
| ! | TTGTTGGAAATGTTACTTGA+GGG | + | chr4_1:44641112-44641131 | Msa0549470:intron | 30.0% |
| ATTGATGCAAAATGTGAACT+GGG | - | chr4_1:44641515-44641534 | None:intergenic | 30.0% | |
| TATTGATGCAAAATGTGAAC+TGG | - | chr4_1:44641516-44641535 | None:intergenic | 30.0% | |
| ! | GTTCACATTTTGCATCAATA+TGG | + | chr4_1:44641516-44641535 | Msa0549470:intron | 30.0% |
| CCTAAATAGCACAAAATATG+GGG | - | chr4_1:44641628-44641647 | None:intergenic | 30.0% | |
| GCCTAAATAGCACAAAATAT+GGG | - | chr4_1:44641629-44641648 | None:intergenic | 30.0% | |
| TAACATATAGAAAACCAGCA+AGG | - | chr4_1:44641770-44641789 | None:intergenic | 30.0% | |
| ATGGAATATACAGAAAAGTG+AGG | - | chr4_1:44642030-44642049 | None:intergenic | 30.0% | |
| !! | TCTGTATATTCCATTTTTCC+TGG | + | chr4_1:44642036-44642055 | Msa0549470:intron | 30.0% |
| ! | GCACCAATTAAAAAAGTGTA+AGG | - | chr4_1:44642176-44642195 | None:intergenic | 30.0% |
| AGCATTTATGTTTCGGAATT+GGG | - | chr4_1:44642406-44642425 | None:intergenic | 30.0% | |
| AAGCATTTATGTTTCGGAAT+TGG | - | chr4_1:44642407-44642426 | None:intergenic | 30.0% | |
| !!! | AAGTTTTAAAACGAAAGGAC+AGG | + | chr4_1:44642486-44642505 | Msa0549470:three_prime_UTR | 30.0% |
| TCATCAGTGAAGTTAAATGG+TGG | - | chr4_1:44641004-44641023 | None:intergenic | 35.0% | |
| GTGTCATCAGTGAAGTTAAA+TGG | - | chr4_1:44641007-44641026 | None:intergenic | 35.0% | |
| TGACACCAGATATATTGAGA+AGG | + | chr4_1:44641021-44641040 | Msa0549470:CDS | 35.0% | |
| GTCAACCTTCTCAATATATC+TGG | - | chr4_1:44641029-44641048 | None:intergenic | 35.0% | |
| ! | TGTTGGAAATGTTACTTGAG+GGG | + | chr4_1:44641113-44641132 | Msa0549470:intron | 35.0% |
| !! | AAGGAGTGATTTGGTGATTT+GGG | - | chr4_1:44641168-44641187 | None:intergenic | 35.0% |
| !! | AAAGGAGTGATTTGGTGATT+TGG | - | chr4_1:44641169-44641188 | None:intergenic | 35.0% |
| ! | TCTCTGTTTAACGAGTTTTG+TGG | + | chr4_1:44641253-44641272 | Msa0549470:CDS | 35.0% |
| CACTGTTCAAAGCAGTTTAT+TGG | + | chr4_1:44641340-44641359 | Msa0549470:CDS | 35.0% | |
| TAAAACATCACATGAGTGTG+TGG | - | chr4_1:44641396-44641415 | None:intergenic | 35.0% | |
| AGTTATAGCAACACCAAACA+AGG | - | chr4_1:44641467-44641486 | None:intergenic | 35.0% | |
| !! | TTGTTTGGTGTTGCTATAAC+TGG | + | chr4_1:44641466-44641485 | Msa0549470:intron | 35.0% |
| TTGATGCAAAATGTGAACTG+GGG | - | chr4_1:44641514-44641533 | None:intergenic | 35.0% | |
| !!! | CCCCATATTTTGTGCTATTT+AGG | + | chr4_1:44641625-44641644 | Msa0549470:intron | 35.0% |
| GGCCTAAATAGCACAAAATA+TGG | - | chr4_1:44641630-44641649 | None:intergenic | 35.0% | |
| GCATGTTGGGCAAATAAAAA+TGG | - | chr4_1:44641658-44641677 | None:intergenic | 35.0% | |
| GGTAATTGACACAAATGTTG+GGG | - | chr4_1:44641688-44641707 | None:intergenic | 35.0% | |
| CGGTAATTGACACAAATGTT+GGG | - | chr4_1:44641689-44641708 | None:intergenic | 35.0% | |
| ACGGTAATTGACACAAATGT+TGG | - | chr4_1:44641690-44641709 | None:intergenic | 35.0% | |
| CATTTGTGTCAATTACCGTT+TGG | + | chr4_1:44641691-44641710 | Msa0549470:intron | 35.0% | |
| GCTTAAAGCTTAGTAAGCTT+TGG | + | chr4_1:44641831-44641850 | Msa0549470:intron | 35.0% | |
| !!! | ATTTTTTGTTTGCCACAGGT+TGG | - | chr4_1:44642082-44642101 | None:intergenic | 35.0% |
| !!! | GCATATTTTTTGTTTGCCAC+AGG | - | chr4_1:44642086-44642105 | None:intergenic | 35.0% |
| GTGACATAAGTTTGCAAAAC+CGG | - | chr4_1:44642126-44642145 | None:intergenic | 35.0% | |
| TTAAAACGAAAGGACAGGTA+AGG | + | chr4_1:44642491-44642510 | Msa0549470:three_prime_UTR | 35.0% | |
| TCATCAGTGAAGTTAAATGG+TGG | - | chr4_1:44641004-44641023 | None:intergenic | 35.0% | |
| GTGTCATCAGTGAAGTTAAA+TGG | - | chr4_1:44641007-44641026 | None:intergenic | 35.0% | |
| TGACACCAGATATATTGAGA+AGG | + | chr4_1:44641021-44641040 | Msa0549470:CDS | 35.0% | |
| GTCAACCTTCTCAATATATC+TGG | - | chr4_1:44641029-44641048 | None:intergenic | 35.0% | |
| ! | TGTTGGAAATGTTACTTGAG+GGG | + | chr4_1:44641113-44641132 | Msa0549470:intron | 35.0% |
| !! | AAGGAGTGATTTGGTGATTT+GGG | - | chr4_1:44641168-44641187 | None:intergenic | 35.0% |
| !! | AAAGGAGTGATTTGGTGATT+TGG | - | chr4_1:44641169-44641188 | None:intergenic | 35.0% |
| ! | TCTCTGTTTAACGAGTTTTG+TGG | + | chr4_1:44641253-44641272 | Msa0549470:CDS | 35.0% |
| CACTGTTCAAAGCAGTTTAT+TGG | + | chr4_1:44641340-44641359 | Msa0549470:CDS | 35.0% | |
| TAAAACATCACATGAGTGTG+TGG | - | chr4_1:44641396-44641415 | None:intergenic | 35.0% | |
| AGTTATAGCAACACCAAACA+AGG | - | chr4_1:44641467-44641486 | None:intergenic | 35.0% | |
| !! | TTGTTTGGTGTTGCTATAAC+TGG | + | chr4_1:44641466-44641485 | Msa0549470:intron | 35.0% |
| TTGATGCAAAATGTGAACTG+GGG | - | chr4_1:44641514-44641533 | None:intergenic | 35.0% | |
| !!! | CCCCATATTTTGTGCTATTT+AGG | + | chr4_1:44641625-44641644 | Msa0549470:intron | 35.0% |
| GGCCTAAATAGCACAAAATA+TGG | - | chr4_1:44641630-44641649 | None:intergenic | 35.0% | |
| GCATGTTGGGCAAATAAAAA+TGG | - | chr4_1:44641658-44641677 | None:intergenic | 35.0% | |
| GGTAATTGACACAAATGTTG+GGG | - | chr4_1:44641688-44641707 | None:intergenic | 35.0% | |
| CGGTAATTGACACAAATGTT+GGG | - | chr4_1:44641689-44641708 | None:intergenic | 35.0% | |
| ACGGTAATTGACACAAATGT+TGG | - | chr4_1:44641690-44641709 | None:intergenic | 35.0% | |
| CATTTGTGTCAATTACCGTT+TGG | + | chr4_1:44641691-44641710 | Msa0549470:intron | 35.0% | |
| GCTTAAAGCTTAGTAAGCTT+TGG | + | chr4_1:44641831-44641850 | Msa0549470:intron | 35.0% | |
| !!! | ATTTTTTGTTTGCCACAGGT+TGG | - | chr4_1:44642082-44642101 | None:intergenic | 35.0% |
| !!! | GCATATTTTTTGTTTGCCAC+AGG | - | chr4_1:44642086-44642105 | None:intergenic | 35.0% |
| GTGACATAAGTTTGCAAAAC+CGG | - | chr4_1:44642126-44642145 | None:intergenic | 35.0% | |
| TTAAAACGAAAGGACAGGTA+AGG | + | chr4_1:44642491-44642510 | Msa0549470:three_prime_UTR | 35.0% | |
| CCTTCACAGATTTCCTATGT+CGG | + | chr4_1:44640944-44640963 | Msa0549470:CDS | 40.0% | |
| !! | GTGAAGTTAAATGGTGGACA+CGG | - | chr4_1:44640998-44641017 | None:intergenic | 40.0% |
| !! | AGGAGTGATTTGGTGATTTG+GGG | - | chr4_1:44641167-44641186 | None:intergenic | 40.0% |
| ATCACCAAATCACTCCTTTC+CGG | + | chr4_1:44641170-44641189 | Msa0549470:intron | 40.0% | |
| AGAAGCTTCAATAGTTACCC+CGG | - | chr4_1:44641192-44641211 | None:intergenic | 40.0% | |
| ACAACTCAAGAGACAAAAGG+TGG | - | chr4_1:44641234-44641253 | None:intergenic | 40.0% | |
| GAGACAACTCAAGAGACAAA+AGG | - | chr4_1:44641237-44641256 | None:intergenic | 40.0% | |
| ! | TTGTATCTGGAAGTGTGAAC+TGG | - | chr4_1:44641315-44641334 | None:intergenic | 40.0% |
| GAACAGTGAACAGTTGTATC+TGG | - | chr4_1:44641328-44641347 | None:intergenic | 40.0% | |
| AAGGCTTGAAATGCACTATG+TGG | - | chr4_1:44641448-44641467 | None:intergenic | 40.0% | |
| !! | AGTGCATTTCAAGCCTTGTT+TGG | + | chr4_1:44641451-44641470 | Msa0549470:intron | 40.0% |
| TGATGCAAAATGTGAACTGG+GGG | - | chr4_1:44641513-44641532 | None:intergenic | 40.0% | |
| ! | GTTTTGTCTCGGTTGTGATT+AGG | + | chr4_1:44641560-44641579 | Msa0549470:intron | 40.0% |
| GGGCAAATAAAAATGGTGTC+AGG | - | chr4_1:44641651-44641670 | None:intergenic | 40.0% | |
| !! | TGTCAATTACCGTTTGGTGT+TGG | + | chr4_1:44641697-44641716 | Msa0549470:intron | 40.0% |
| ! | TCTAAGACACCAACACCAAA+CGG | - | chr4_1:44641709-44641728 | None:intergenic | 40.0% |
| ! | TTGGTGTCTTAGATGTGGTT+TGG | + | chr4_1:44641716-44641735 | Msa0549470:intron | 40.0% |
| CATGTGTGGAACAAATATCG+AGG | - | chr4_1:44641742-44641761 | None:intergenic | 40.0% | |
| TGTCTGATTGCCAGGAAAAA+TGG | - | chr4_1:44642049-44642068 | None:intergenic | 40.0% | |
| GGAAAAAATGTCTGATTGCC+AGG | - | chr4_1:44642057-44642076 | None:intergenic | 40.0% | |
| ATGTAACCCTGAGAATTGTG+AGG | + | chr4_1:44642261-44642280 | Msa0549470:exon | 40.0% | |
| TCATGTCCTCACAATTCTCA+GGG | - | chr4_1:44642270-44642289 | None:intergenic | 40.0% | |
| ATCATGTCCTCACAATTCTC+AGG | - | chr4_1:44642271-44642290 | None:intergenic | 40.0% | |
| CCTTCACAGATTTCCTATGT+CGG | + | chr4_1:44640944-44640963 | Msa0549470:CDS | 40.0% | |
| !! | GTGAAGTTAAATGGTGGACA+CGG | - | chr4_1:44640998-44641017 | None:intergenic | 40.0% |
| !! | AGGAGTGATTTGGTGATTTG+GGG | - | chr4_1:44641167-44641186 | None:intergenic | 40.0% |
| ATCACCAAATCACTCCTTTC+CGG | + | chr4_1:44641170-44641189 | Msa0549470:intron | 40.0% | |
| AGAAGCTTCAATAGTTACCC+CGG | - | chr4_1:44641192-44641211 | None:intergenic | 40.0% | |
| ACAACTCAAGAGACAAAAGG+TGG | - | chr4_1:44641234-44641253 | None:intergenic | 40.0% | |
| GAGACAACTCAAGAGACAAA+AGG | - | chr4_1:44641237-44641256 | None:intergenic | 40.0% | |
| ! | TTGTATCTGGAAGTGTGAAC+TGG | - | chr4_1:44641315-44641334 | None:intergenic | 40.0% |
| GAACAGTGAACAGTTGTATC+TGG | - | chr4_1:44641328-44641347 | None:intergenic | 40.0% | |
| AAGGCTTGAAATGCACTATG+TGG | - | chr4_1:44641448-44641467 | None:intergenic | 40.0% | |
| !! | AGTGCATTTCAAGCCTTGTT+TGG | + | chr4_1:44641451-44641470 | Msa0549470:intron | 40.0% |
| TGATGCAAAATGTGAACTGG+GGG | - | chr4_1:44641513-44641532 | None:intergenic | 40.0% | |
| ! | GTTTTGTCTCGGTTGTGATT+AGG | + | chr4_1:44641560-44641579 | Msa0549470:intron | 40.0% |
| GGGCAAATAAAAATGGTGTC+AGG | - | chr4_1:44641651-44641670 | None:intergenic | 40.0% | |
| !! | TGTCAATTACCGTTTGGTGT+TGG | + | chr4_1:44641697-44641716 | Msa0549470:intron | 40.0% |
| ! | TCTAAGACACCAACACCAAA+CGG | - | chr4_1:44641709-44641728 | None:intergenic | 40.0% |
| ! | TTGGTGTCTTAGATGTGGTT+TGG | + | chr4_1:44641716-44641735 | Msa0549470:intron | 40.0% |
| CATGTGTGGAACAAATATCG+AGG | - | chr4_1:44641742-44641761 | None:intergenic | 40.0% | |
| TGTCTGATTGCCAGGAAAAA+TGG | - | chr4_1:44642049-44642068 | None:intergenic | 40.0% | |
| GGAAAAAATGTCTGATTGCC+AGG | - | chr4_1:44642057-44642076 | None:intergenic | 40.0% | |
| ATGTAACCCTGAGAATTGTG+AGG | + | chr4_1:44642261-44642280 | Msa0549470:exon | 40.0% | |
| TCATGTCCTCACAATTCTCA+GGG | - | chr4_1:44642270-44642289 | None:intergenic | 40.0% | |
| ATCATGTCCTCACAATTCTC+AGG | - | chr4_1:44642271-44642290 | None:intergenic | 40.0% | |
| CCGACATAGGAAATCTGTGA+AGG | - | chr4_1:44640947-44640966 | None:intergenic | 45.0% | |
| !! | AAGTTAAATGGTGGACACGG+TGG | - | chr4_1:44640995-44641014 | None:intergenic | 45.0% |
| ATCCCTTTCTCATGCTTTCC+CGG | + | chr4_1:44641052-44641071 | Msa0549470:CDS | 45.0% | |
| !! | GGAGTGATTTGGTGATTTGG+GGG | - | chr4_1:44641166-44641185 | None:intergenic | 45.0% |
| TCACCAAATCACTCCTTTCC+GGG | + | chr4_1:44641171-44641190 | Msa0549470:intron | 45.0% | |
| CTTCAATAGTTACCCCGGAA+AGG | - | chr4_1:44641187-44641206 | None:intergenic | 45.0% | |
| TTACCCGTTCTGTTTGCCAT+TGG | + | chr4_1:44641364-44641383 | Msa0549470:CDS | 45.0% | |
| ATGCCAATGGCAAACAGAAC+GGG | - | chr4_1:44641370-44641389 | None:intergenic | 45.0% | |
| CATGCCAATGGCAAACAGAA+CGG | - | chr4_1:44641371-44641390 | None:intergenic | 45.0% | |
| TTGGGGTCAGATTGCATGTT+GGG | - | chr4_1:44641671-44641690 | None:intergenic | 45.0% | |
| !! | TGGTGTTGGTGTCTTAGATG+TGG | + | chr4_1:44641711-44641730 | Msa0549470:intron | 45.0% |
| !! | GCTTAGTAAGCTTTGGCTTG+AGG | + | chr4_1:44641838-44641857 | Msa0549470:intron | 45.0% |
| !! | AGTAAGCTTTGGCTTGAGGT+AGG | + | chr4_1:44641842-44641861 | Msa0549470:intron | 45.0% |
| !! | GTAAGCTTTGGCTTGAGGTA+GGG | + | chr4_1:44641843-44641862 | Msa0549470:intron | 45.0% |
| !!! | CATTTTTTCCCTCCAACCTG+TGG | + | chr4_1:44642067-44642086 | Msa0549470:intron | 45.0% |
| ! | TTTGTTTGCCACAGGTTGGA+GGG | - | chr4_1:44642078-44642097 | None:intergenic | 45.0% |
| !! | TTTTGTTTGCCACAGGTTGG+AGG | - | chr4_1:44642079-44642098 | None:intergenic | 45.0% |
| TAATTGGTGCAGTGTTCGTC+AGG | + | chr4_1:44642186-44642205 | Msa0549470:intron | 45.0% | |
| CCGACATAGGAAATCTGTGA+AGG | - | chr4_1:44640947-44640966 | None:intergenic | 45.0% | |
| !! | AAGTTAAATGGTGGACACGG+TGG | - | chr4_1:44640995-44641014 | None:intergenic | 45.0% |
| ATCCCTTTCTCATGCTTTCC+CGG | + | chr4_1:44641052-44641071 | Msa0549470:CDS | 45.0% | |
| !! | GGAGTGATTTGGTGATTTGG+GGG | - | chr4_1:44641166-44641185 | None:intergenic | 45.0% |
| TCACCAAATCACTCCTTTCC+GGG | + | chr4_1:44641171-44641190 | Msa0549470:intron | 45.0% | |
| CTTCAATAGTTACCCCGGAA+AGG | - | chr4_1:44641187-44641206 | None:intergenic | 45.0% | |
| TTACCCGTTCTGTTTGCCAT+TGG | + | chr4_1:44641364-44641383 | Msa0549470:CDS | 45.0% | |
| ATGCCAATGGCAAACAGAAC+GGG | - | chr4_1:44641370-44641389 | None:intergenic | 45.0% | |
| CATGCCAATGGCAAACAGAA+CGG | - | chr4_1:44641371-44641390 | None:intergenic | 45.0% | |
| TTGGGGTCAGATTGCATGTT+GGG | - | chr4_1:44641671-44641690 | None:intergenic | 45.0% | |
| !! | TGGTGTTGGTGTCTTAGATG+TGG | + | chr4_1:44641711-44641730 | Msa0549470:intron | 45.0% |
| !! | GCTTAGTAAGCTTTGGCTTG+AGG | + | chr4_1:44641838-44641857 | Msa0549470:intron | 45.0% |
| !! | AGTAAGCTTTGGCTTGAGGT+AGG | + | chr4_1:44641842-44641861 | Msa0549470:intron | 45.0% |
| !! | GTAAGCTTTGGCTTGAGGTA+GGG | + | chr4_1:44641843-44641862 | Msa0549470:intron | 45.0% |
| !!! | CATTTTTTCCCTCCAACCTG+TGG | + | chr4_1:44642067-44642086 | Msa0549470:intron | 45.0% |
| ! | TTTGTTTGCCACAGGTTGGA+GGG | - | chr4_1:44642078-44642097 | None:intergenic | 45.0% |
| !! | TTTTGTTTGCCACAGGTTGG+AGG | - | chr4_1:44642079-44642098 | None:intergenic | 45.0% |
| TAATTGGTGCAGTGTTCGTC+AGG | + | chr4_1:44642186-44642205 | Msa0549470:intron | 45.0% | |
| GATTCTTGGACGACCGACAT+AGG | - | chr4_1:44640960-44640979 | None:intergenic | 50.0% | |
| GGAATGGTGTGGCAGATTCT+TGG | - | chr4_1:44640974-44640993 | None:intergenic | 50.0% | |
| !! | AAATGGTGGACACGGTGGAA+TGG | - | chr4_1:44640990-44641009 | None:intergenic | 50.0% |
| TCCCTTTCTCATGCTTTCCC+GGG | + | chr4_1:44641053-44641072 | Msa0549470:CDS | 50.0% | |
| ! | ACCCGGGAAAGCATGAGAAA+GGG | - | chr4_1:44641057-44641076 | None:intergenic | 50.0% |
| ! | TACCCGGGAAAGCATGAGAA+AGG | - | chr4_1:44641058-44641077 | None:intergenic | 50.0% |
| GATTTGGGGGAGGAGGATAA+GGG | - | chr4_1:44641153-44641172 | None:intergenic | 50.0% | |
| ! | TGATTTGGGGGAGGAGGATA+AGG | - | chr4_1:44641154-44641173 | None:intergenic | 50.0% |
| ! | ATTTGGTGATTTGGGGGAGG+AGG | - | chr4_1:44641160-44641179 | None:intergenic | 50.0% |
| !! | GTGATTTGGTGATTTGGGGG+AGG | - | chr4_1:44641163-44641182 | None:intergenic | 50.0% |
| CACCAAATCACTCCTTTCCG+GGG | + | chr4_1:44641172-44641191 | Msa0549470:intron | 50.0% | |
| TACCCCGGAAAGGAGTGATT+TGG | - | chr4_1:44641177-44641196 | None:intergenic | 50.0% | |
| CAACCTGTCTTAGCGTCCTT+AGG | + | chr4_1:44641289-44641308 | Msa0549470:CDS | 50.0% | |
| ! | TGGAAGTGTGAACTGGCCTA+AGG | - | chr4_1:44641308-44641327 | None:intergenic | 50.0% |
| CGTTCTGTTTGCCATTGGCA+TGG | + | chr4_1:44641369-44641388 | Msa0549470:CDS | 50.0% | |
| AAATGCACTATGTGGCCCTC+AGG | - | chr4_1:44641440-44641459 | None:intergenic | 50.0% | |
| CTAGACTGCACTTGGGAGTT+GGG | - | chr4_1:44641603-44641622 | None:intergenic | 50.0% | |
| TCTAGACTGCACTTGGGAGT+TGG | - | chr4_1:44641604-44641623 | None:intergenic | 50.0% | |
| TGGGGATCTAGACTGCACTT+GGG | - | chr4_1:44641610-44641629 | None:intergenic | 50.0% | |
| ATGGGGATCTAGACTGCACT+TGG | - | chr4_1:44641611-44641630 | None:intergenic | 50.0% | |
| GTTGGGGTCAGATTGCATGT+TGG | - | chr4_1:44641672-44641691 | None:intergenic | 50.0% | |
| ! | TCAGGAGGATATGTGCTGCT+TGG | + | chr4_1:44642204-44642223 | Msa0549470:CDS | 50.0% |
| !! | CAGGAGGATATGTGCTGCTT+GGG | + | chr4_1:44642205-44642224 | Msa0549470:CDS | 50.0% |
| !! | AGGAGGATATGTGCTGCTTG+GGG | + | chr4_1:44642206-44642225 | Msa0549470:CDS | 50.0% |
| !! | TATGTGCTGCTTGGGGGTTA+TGG | + | chr4_1:44642213-44642232 | Msa0549470:CDS | 50.0% |
| GATTCTTGGACGACCGACAT+AGG | - | chr4_1:44640960-44640979 | None:intergenic | 50.0% | |
| GGAATGGTGTGGCAGATTCT+TGG | - | chr4_1:44640974-44640993 | None:intergenic | 50.0% | |
| !! | AAATGGTGGACACGGTGGAA+TGG | - | chr4_1:44640990-44641009 | None:intergenic | 50.0% |
| TCCCTTTCTCATGCTTTCCC+GGG | + | chr4_1:44641053-44641072 | Msa0549470:CDS | 50.0% | |
| ! | ACCCGGGAAAGCATGAGAAA+GGG | - | chr4_1:44641057-44641076 | None:intergenic | 50.0% |
| ! | TACCCGGGAAAGCATGAGAA+AGG | - | chr4_1:44641058-44641077 | None:intergenic | 50.0% |
| GATTTGGGGGAGGAGGATAA+GGG | - | chr4_1:44641153-44641172 | None:intergenic | 50.0% | |
| ! | TGATTTGGGGGAGGAGGATA+AGG | - | chr4_1:44641154-44641173 | None:intergenic | 50.0% |
| ! | ATTTGGTGATTTGGGGGAGG+AGG | - | chr4_1:44641160-44641179 | None:intergenic | 50.0% |
| !! | GTGATTTGGTGATTTGGGGG+AGG | - | chr4_1:44641163-44641182 | None:intergenic | 50.0% |
| CACCAAATCACTCCTTTCCG+GGG | + | chr4_1:44641172-44641191 | Msa0549470:intron | 50.0% | |
| TACCCCGGAAAGGAGTGATT+TGG | - | chr4_1:44641177-44641196 | None:intergenic | 50.0% | |
| CAACCTGTCTTAGCGTCCTT+AGG | + | chr4_1:44641289-44641308 | Msa0549470:CDS | 50.0% | |
| ! | TGGAAGTGTGAACTGGCCTA+AGG | - | chr4_1:44641308-44641327 | None:intergenic | 50.0% |
| CGTTCTGTTTGCCATTGGCA+TGG | + | chr4_1:44641369-44641388 | Msa0549470:CDS | 50.0% | |
| AAATGCACTATGTGGCCCTC+AGG | - | chr4_1:44641440-44641459 | None:intergenic | 50.0% | |
| CTAGACTGCACTTGGGAGTT+GGG | - | chr4_1:44641603-44641622 | None:intergenic | 50.0% | |
| TCTAGACTGCACTTGGGAGT+TGG | - | chr4_1:44641604-44641623 | None:intergenic | 50.0% | |
| TGGGGATCTAGACTGCACTT+GGG | - | chr4_1:44641610-44641629 | None:intergenic | 50.0% | |
| ATGGGGATCTAGACTGCACT+TGG | - | chr4_1:44641611-44641630 | None:intergenic | 50.0% | |
| GTTGGGGTCAGATTGCATGT+TGG | - | chr4_1:44641672-44641691 | None:intergenic | 50.0% | |
| ! | TCAGGAGGATATGTGCTGCT+TGG | + | chr4_1:44642204-44642223 | Msa0549470:CDS | 50.0% |
| !! | CAGGAGGATATGTGCTGCTT+GGG | + | chr4_1:44642205-44642224 | Msa0549470:CDS | 50.0% |
| !! | AGGAGGATATGTGCTGCTTG+GGG | + | chr4_1:44642206-44642225 | Msa0549470:CDS | 50.0% |
| !! | TATGTGCTGCTTGGGGGTTA+TGG | + | chr4_1:44642213-44642232 | Msa0549470:CDS | 50.0% |
| TGGCCTAAGGACGCTAAGAC+AGG | - | chr4_1:44641295-44641314 | None:intergenic | 55.0% | |
| GAGTGTGTGGACCATGCCAA+TGG | - | chr4_1:44641383-44641402 | None:intergenic | 55.0% | |
| CCAGCAAGGCATGTCATGTG+TGG | - | chr4_1:44641756-44641775 | None:intergenic | 55.0% | |
| CCACACATGACATGCCTTGC+TGG | + | chr4_1:44641753-44641772 | Msa0549470:intron | 55.0% | |
| TTGGTGCAGTGTTCGTCAGG+AGG | + | chr4_1:44642189-44642208 | Msa0549470:intron | 55.0% | |
| !! | GGAGGATATGTGCTGCTTGG+GGG | + | chr4_1:44642207-44642226 | Msa0549470:CDS | 55.0% |
| TGGCCTAAGGACGCTAAGAC+AGG | - | chr4_1:44641295-44641314 | None:intergenic | 55.0% | |
| GAGTGTGTGGACCATGCCAA+TGG | - | chr4_1:44641383-44641402 | None:intergenic | 55.0% | |
| CCAGCAAGGCATGTCATGTG+TGG | - | chr4_1:44641756-44641775 | None:intergenic | 55.0% | |
| CCACACATGACATGCCTTGC+TGG | + | chr4_1:44641753-44641772 | Msa0549470:intron | 55.0% | |
| TTGGTGCAGTGTTCGTCAGG+AGG | + | chr4_1:44642189-44642208 | Msa0549470:intron | 55.0% | |
| !! | GGAGGATATGTGCTGCTTGG+GGG | + | chr4_1:44642207-44642226 | Msa0549470:CDS | 55.0% |
| GTGGACACGGTGGAATGGTG+TGG | - | chr4_1:44640985-44641004 | None:intergenic | 60.0% | |
| TTCCTGTTCGACTGCGCCTG+AGG | + | chr4_1:44641421-44641440 | Msa0549470:intron | 60.0% | |
| TCCTGTTCGACTGCGCCTGA+GGG | + | chr4_1:44641422-44641441 | Msa0549470:intron | 60.0% | |
| GTGGACACGGTGGAATGGTG+TGG | - | chr4_1:44640985-44641004 | None:intergenic | 60.0% | |
| TTCCTGTTCGACTGCGCCTG+AGG | + | chr4_1:44641421-44641440 | Msa0549470:intron | 60.0% | |
| TCCTGTTCGACTGCGCCTGA+GGG | + | chr4_1:44641422-44641441 | Msa0549470:intron | 60.0% | |
| GCCCTCAGGCGCAGTCGAAC+AGG | - | chr4_1:44641426-44641445 | None:intergenic | 70.0% | |
| GCCCTCAGGCGCAGTCGAAC+AGG | - | chr4_1:44641426-44641445 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 44640932 | 44642582 | 44640932 | ID=Msa0549470;Name=Msa0549470 |
| chr4_1 | mRNA | 44640932 | 44642582 | 44640932 | ID=Msa0549470-mRNA-1;Parent=Msa0549470;Name=Msa0549470-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0.33|0.33|1|1|3|316|123 |
| chr4_1 | exon | 44640932 | 44641074 | 44640932 | ID=Msa0549470-mRNA-1:exon:11647;Parent=Msa0549470-mRNA-1 |
| chr4_1 | exon | 44641231 | 44641390 | 44641231 | ID=Msa0549470-mRNA-1:exon:11648;Parent=Msa0549470-mRNA-1 |
| chr4_1 | exon | 44642198 | 44642582 | 44642198 | ID=Msa0549470-mRNA-1:exon:11649;Parent=Msa0549470-mRNA-1 |
| chr4_1 | CDS | 44640932 | 44641074 | 44640932 | ID=Msa0549470-mRNA-1:cds;Parent=Msa0549470-mRNA-1 |
| chr4_1 | CDS | 44641231 | 44641390 | 44641231 | ID=Msa0549470-mRNA-1:cds;Parent=Msa0549470-mRNA-1 |
| chr4_1 | CDS | 44642198 | 44642266 | 44642198 | ID=Msa0549470-mRNA-1:cds;Parent=Msa0549470-mRNA-1 |
| chr4_1 | three_prime_UTR | 44642267 | 44642582 | 44642267 | ID=Msa0549470-mRNA-1:three_prime_utr;Parent=Msa0549470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
