AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493480 MtrunA17_Chr3g0084311 100.000 87 0 0 1 87 1 87 3.05e-63 185
Msa0493480 MtrunA17_Chr3g0084301 100.000 87 0 0 1 87 1 87 3.05e-63 185
Msa0493480 MtrunA17_Chr8g0364261 97.701 87 2 0 1 87 1 87 1.08e-61 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493480 AT4G14342.1 89.655 87 9 0 1 87 1 87 6.87e-58 172
Msa0493480 AT3G23325.1 87.356 87 11 0 1 87 1 87 9.07e-57 169
Msa0493480 AT4G14342.2 86.250 80 11 0 1 80 1 80 3.84e-49 150

Find 28 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAATCTTCTTCTCTTTC+AGG 0.133068 3_4:-18596069 None:intergenic
TGTTGGAGATTAGTCTAAAT+AGG 0.252183 3_4:+18596300 Msa0493480:three_prime_UTR
GATAGCTATGCTTCGTATAT+TGG 0.282004 3_4:+18594328 Msa0493480:CDS
TACTTTAGTAGCATAGAAAT+AGG 0.321750 3_4:+18596340 Msa0493480:three_prime_UTR
ATTGCTCAAAACGAATCTAT+TGG 0.369668 3_4:+18594379 Msa0493480:CDS
GTTGGAGATTAGTCTAAATA+GGG 0.397001 3_4:+18596301 Msa0493480:three_prime_UTR
TCGTGACTTGTTAATTATAG+AGG 0.412016 3_4:+18594184 Msa0493480:five_prime_UTR
TAGAAAAGTAAGAAAGTAAA+GGG 0.419141 3_4:-18594357 None:intergenic
GCAATATGCAGGCGAGTGAT+AGG 0.420071 3_4:+18594206 Msa0493480:exon
CAAGCTAAATATGTTGGAAC+TGG 0.450379 3_4:+18594259 Msa0493480:CDS
ATAGAAAAGTAAGAAAGTAA+AGG 0.454525 3_4:-18594358 None:intergenic
AAGAAGATTAGAATTATCGT+TGG 0.471758 3_4:+18596079 Msa0493480:exon
CTGATATCAATAGATTTGAA+TGG 0.473717 3_4:+18594287 Msa0493480:CDS
AAATTATACAGTACAACATA+TGG 0.481227 3_4:-18596132 None:intergenic
AGCTTGCAGATGCTCAAGTT+GGG 0.481702 3_4:-18594242 None:intergenic
AGAAGATTAGAATTATCGTT+GGG 0.491177 3_4:+18596080 Msa0493480:exon
CATCTGCAAGCTAAATATGT+TGG 0.495824 3_4:+18594253 Msa0493480:CDS
AGTAAGAAAGTAAAGGGTAA+TGG 0.502423 3_4:-18594351 None:intergenic
TAGCTTGCAGATGCTCAAGT+TGG 0.505443 3_4:-18594243 None:intergenic
ATAATTAACAAGTCACGAGC+TGG 0.530696 3_4:-18594179 None:intergenic
ATTATCGTTGGGATCATCAC+AGG 0.545841 3_4:+18596091 Msa0493480:three_prime_UTR
CAGGAGCAAGACCACATGGC+AGG 0.553543 3_4:-18596050 None:intergenic
TGATATCAATAGATTTGAAT+GGG 0.559675 3_4:+18594288 Msa0493480:CDS
TAATTATAGAGGCAATATGC+AGG 0.569392 3_4:+18594195 Msa0493480:exon
CTTTCAGGAGCAAGACCACA+TGG 0.584496 3_4:-18596054 None:intergenic
ATTAGTCTAAATAGGGAACT+CGG 0.617320 3_4:+18596308 Msa0493480:three_prime_UTR
ATCATCACAGGAGAGTTGAA+AGG 0.629634 3_4:+18596103 Msa0493480:three_prime_UTR
CAGAAAATGCTCCTGCCATG+TGG 0.640622 3_4:+18596039 Msa0493480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTATTAGAAAGAATA+GGG - chr3_4:18594897-18594916 None:intergenic 15.0%
!!! ATTAATATTTGAGTTTAAGA+AGG + chr3_4:18594953-18594972 Msa0493480:intron 15.0%
!!! TTAATATTTGAGTTTAAGAA+GGG + chr3_4:18594954-18594973 Msa0493480:intron 15.0%
!! AATAAAAATTGAATAAATCC+AGG - chr3_4:18595923-18595942 None:intergenic 15.0%
!!! TGATTTATATGTTATCTTTT+TGG - chr3_4:18596380-18596399 None:intergenic 15.0%
!!! GTATTTTATTAGAAAGAATA+GGG - chr3_4:18594897-18594916 None:intergenic 15.0%
!!! ATTAATATTTGAGTTTAAGA+AGG + chr3_4:18594953-18594972 Msa0493480:intron 15.0%
!!! TTAATATTTGAGTTTAAGAA+GGG + chr3_4:18594954-18594973 Msa0493480:intron 15.0%
!! AATAAAAATTGAATAAATCC+AGG - chr3_4:18595923-18595942 None:intergenic 15.0%
!!! TGATTTATATGTTATCTTTT+TGG - chr3_4:18596380-18596399 None:intergenic 15.0%
!! TGATATCAATAGATTTGAAT+GGG + chr3_4:18594288-18594307 Msa0493480:CDS 20.0%
!! TAGAAAAGTAAGAAAGTAAA+GGG - chr3_4:18594360-18594379 None:intergenic 20.0%
!! ATAGAAAAGTAAGAAAGTAA+AGG - chr3_4:18594361-18594380 None:intergenic 20.0%
!! AAAGAAAATAGTAATGATCT+AGG - chr3_4:18594473-18594492 None:intergenic 20.0%
!!! TCCTATTTATTTCTAAATCA+CGG - chr3_4:18594804-18594823 None:intergenic 20.0%
!!! GGTATTTTATTAGAAAGAAT+AGG - chr3_4:18594898-18594917 None:intergenic 20.0%
!!! TTCTATTCTTTTCTTTGTTT+TGG + chr3_4:18595070-18595089 Msa0493480:intron 20.0%
!!! AAATCAGATTTTGTTCAAAT+TGG + chr3_4:18595323-18595342 Msa0493480:intron 20.0%
!!! AATCAGATTTTGTTCAAATT+GGG + chr3_4:18595324-18595343 Msa0493480:intron 20.0%
!! AGAAAAGTAGTTTAGAAATA+TGG + chr3_4:18595484-18595503 Msa0493480:intron 20.0%
!!! AGTTTAGAAATATGGTTTTT+TGG + chr3_4:18595492-18595511 Msa0493480:intron 20.0%
!!! TTTAGGCTTTTTCTTTTAAA+GGG - chr3_4:18595621-18595640 None:intergenic 20.0%
!!! TTTTAGGCTTTTTCTTTTAA+AGG - chr3_4:18595622-18595641 None:intergenic 20.0%
!! AATAAAAATTGAATAAACCC+AGG - chr3_4:18595844-18595863 None:intergenic 20.0%
!! TTACTTGATTGATTGAAATA+TGG + chr3_4:18595869-18595888 Msa0493480:intron 20.0%
!!! AAATTAGAATATAAAGTGCT+AGG - chr3_4:18595999-18596018 None:intergenic 20.0%
!! AAATTATACAGTACAACATA+TGG - chr3_4:18596135-18596154 None:intergenic 20.0%
!!! TTATATGTTATCTTTTTGGA+GGG - chr3_4:18596376-18596395 None:intergenic 20.0%
!!! TTTATATGTTATCTTTTTGG+AGG - chr3_4:18596377-18596396 None:intergenic 20.0%
!! TGATATCAATAGATTTGAAT+GGG + chr3_4:18594288-18594307 Msa0493480:CDS 20.0%
!! TAGAAAAGTAAGAAAGTAAA+GGG - chr3_4:18594360-18594379 None:intergenic 20.0%
!! ATAGAAAAGTAAGAAAGTAA+AGG - chr3_4:18594361-18594380 None:intergenic 20.0%
!! AAAGAAAATAGTAATGATCT+AGG - chr3_4:18594473-18594492 None:intergenic 20.0%
!!! TCCTATTTATTTCTAAATCA+CGG - chr3_4:18594804-18594823 None:intergenic 20.0%
!!! GGTATTTTATTAGAAAGAAT+AGG - chr3_4:18594898-18594917 None:intergenic 20.0%
!!! TTCTATTCTTTTCTTTGTTT+TGG + chr3_4:18595070-18595089 Msa0493480:intron 20.0%
!!! AAATCAGATTTTGTTCAAAT+TGG + chr3_4:18595323-18595342 Msa0493480:intron 20.0%
!!! AATCAGATTTTGTTCAAATT+GGG + chr3_4:18595324-18595343 Msa0493480:intron 20.0%
!! AGAAAAGTAGTTTAGAAATA+TGG + chr3_4:18595484-18595503 Msa0493480:intron 20.0%
!!! AGTTTAGAAATATGGTTTTT+TGG + chr3_4:18595492-18595511 Msa0493480:intron 20.0%
!!! TTTAGGCTTTTTCTTTTAAA+GGG - chr3_4:18595621-18595640 None:intergenic 20.0%
!!! TTTTAGGCTTTTTCTTTTAA+AGG - chr3_4:18595622-18595641 None:intergenic 20.0%
!! AATAAAAATTGAATAAACCC+AGG - chr3_4:18595844-18595863 None:intergenic 20.0%
!! TTACTTGATTGATTGAAATA+TGG + chr3_4:18595869-18595888 Msa0493480:intron 20.0%
!!! AAATTAGAATATAAAGTGCT+AGG - chr3_4:18595999-18596018 None:intergenic 20.0%
!! AAATTATACAGTACAACATA+TGG - chr3_4:18596135-18596154 None:intergenic 20.0%
!!! TTATATGTTATCTTTTTGGA+GGG - chr3_4:18596376-18596395 None:intergenic 20.0%
!!! TTTATATGTTATCTTTTTGG+AGG - chr3_4:18596377-18596396 None:intergenic 20.0%
! CTGATATCAATAGATTTGAA+TGG + chr3_4:18594287-18594306 Msa0493480:CDS 25.0%
! ACCGTGATTTAGAAATAAAT+AGG + chr3_4:18594800-18594819 Msa0493480:intron 25.0%
!!! AACTTTTTCAGACTCTTTTT+CGG + chr3_4:18595006-18595025 Msa0493480:intron 25.0%
! AAACTAGTGACAAAAATCTT+TGG + chr3_4:18595135-18595154 Msa0493480:intron 25.0%
! AAACTAGTGACAAAAATCTT+TGG - chr3_4:18595135-18595154 None:intergenic 25.0%
!! AAAGATTTTTGTCACTAGTT+TGG + chr3_4:18595176-18595195 Msa0493480:intron 25.0%
! TGGTAACACTTTAATCAAAA+AGG - chr3_4:18595204-18595223 None:intergenic 25.0%
!!! TTTTTTGGTTGTTAACCAAA+TGG + chr3_4:18595507-18595526 Msa0493480:intron 25.0%
!! CCTTCTCTTAAAAATGTTTT+TGG - chr3_4:18595724-18595743 None:intergenic 25.0%
!!! CCAAAAACATTTTTAAGAGA+AGG + chr3_4:18595721-18595740 Msa0493480:intron 25.0%
!! TTAAACATGTTATTGGTAGT+GGG - chr3_4:18595759-18595778 None:intergenic 25.0%
! TACCAATAACATGTTTAAGA+AGG + chr3_4:18595761-18595780 Msa0493480:intron 25.0%
! AACCTTCTTAAACATGTTAT+TGG - chr3_4:18595766-18595785 None:intergenic 25.0%
!!! TAATAATGAATGGATTGTGA+AGG + chr3_4:18595807-18595826 Msa0493480:intron 25.0%
! AAGAAGATTAGAATTATCGT+TGG + chr3_4:18596079-18596098 Msa0493480:exon 25.0%
! AGAAGATTAGAATTATCGTT+GGG + chr3_4:18596080-18596099 Msa0493480:exon 25.0%
! AGCAACTAAAAAAAAAACGA+TGG - chr3_4:18596191-18596210 None:intergenic 25.0%
!! GCAAAATATTGTACTTTTCA+TGG + chr3_4:18596273-18596292 Msa0493480:three_prime_UTR 25.0%
! TACTTTAGTAGCATAGAAAT+AGG + chr3_4:18596340-18596359 Msa0493480:three_prime_UTR 25.0%
! CTGATATCAATAGATTTGAA+TGG + chr3_4:18594287-18594306 Msa0493480:CDS 25.0%
! ACCGTGATTTAGAAATAAAT+AGG + chr3_4:18594800-18594819 Msa0493480:intron 25.0%
!!! AACTTTTTCAGACTCTTTTT+CGG + chr3_4:18595006-18595025 Msa0493480:intron 25.0%
! AAACTAGTGACAAAAATCTT+TGG + chr3_4:18595135-18595154 Msa0493480:intron 25.0%
! AAACTAGTGACAAAAATCTT+TGG - chr3_4:18595135-18595154 None:intergenic 25.0%
!! AAAGATTTTTGTCACTAGTT+TGG + chr3_4:18595176-18595195 Msa0493480:intron 25.0%
! TGGTAACACTTTAATCAAAA+AGG - chr3_4:18595204-18595223 None:intergenic 25.0%
!!! TTTTTTGGTTGTTAACCAAA+TGG + chr3_4:18595507-18595526 Msa0493480:intron 25.0%
!! CCTTCTCTTAAAAATGTTTT+TGG - chr3_4:18595724-18595743 None:intergenic 25.0%
!!! CCAAAAACATTTTTAAGAGA+AGG + chr3_4:18595721-18595740 Msa0493480:intron 25.0%
!! TTAAACATGTTATTGGTAGT+GGG - chr3_4:18595759-18595778 None:intergenic 25.0%
! TACCAATAACATGTTTAAGA+AGG + chr3_4:18595761-18595780 Msa0493480:intron 25.0%
! AACCTTCTTAAACATGTTAT+TGG - chr3_4:18595766-18595785 None:intergenic 25.0%
!!! TAATAATGAATGGATTGTGA+AGG + chr3_4:18595807-18595826 Msa0493480:intron 25.0%
! AAGAAGATTAGAATTATCGT+TGG + chr3_4:18596079-18596098 Msa0493480:exon 25.0%
! AGAAGATTAGAATTATCGTT+GGG + chr3_4:18596080-18596099 Msa0493480:exon 25.0%
! AGCAACTAAAAAAAAAACGA+TGG - chr3_4:18596191-18596210 None:intergenic 25.0%
!! GCAAAATATTGTACTTTTCA+TGG + chr3_4:18596273-18596292 Msa0493480:three_prime_UTR 25.0%
! TACTTTAGTAGCATAGAAAT+AGG + chr3_4:18596340-18596359 Msa0493480:three_prime_UTR 25.0%
!! TCGTGACTTGTTAATTATAG+AGG + chr3_4:18594184-18594203 Msa0493480:five_prime_UTR 30.0%
TAATTATAGAGGCAATATGC+AGG + chr3_4:18594195-18594214 Msa0493480:exon 30.0%
AGTAAGAAAGTAAAGGGTAA+TGG - chr3_4:18594354-18594373 None:intergenic 30.0%
ATTGCTCAAAACGAATCTAT+TGG + chr3_4:18594379-18594398 Msa0493480:CDS 30.0%
TGATGTCAAAACATTGAACT+TGG + chr3_4:18594525-18594544 Msa0493480:intron 30.0%
TCAAAACATTGAACTTGGTT+AGG + chr3_4:18594530-18594549 Msa0493480:intron 30.0%
TGTACAATTGTGTGATTGTA+TGG - chr3_4:18595269-18595288 None:intergenic 30.0%
AATCGTTGAATTGAATGATC+TGG + chr3_4:18595363-18595382 Msa0493480:intron 30.0%
!! TTAGCTTGTTTCTATAGCTA+AGG - chr3_4:18595588-18595607 None:intergenic 30.0%
!! TCCTATTTTCAAGACGTTTT+AGG - chr3_4:18595638-18595657 None:intergenic 30.0%
!! AAAAAGAGAAAGCATTGAAG+TGG + chr3_4:18595680-18595699 Msa0493480:intron 30.0%
CTTAAACATGTTATTGGTAG+TGG - chr3_4:18595760-18595779 None:intergenic 30.0%
ACGTCTCATCTAATAATGAA+TGG + chr3_4:18595797-18595816 Msa0493480:intron 30.0%
TGAAGGAAAATAATACTCCT+GGG + chr3_4:18595824-18595843 Msa0493480:intron 30.0%
! AGGTGAGATTATAAAGTATC+AGG - chr3_4:18595903-18595922 None:intergenic 30.0%
TGATACTTTATAATCTCACC+TGG + chr3_4:18595902-18595921 Msa0493480:intron 30.0%
TTCTAATCTTCTTCTCTTTC+AGG - chr3_4:18596072-18596091 None:intergenic 30.0%
!!! CTTAACTTTGCCTGTTTTTA+TGG + chr3_4:18596209-18596228 Msa0493480:three_prime_UTR 30.0%
!! TGTTGGAGATTAGTCTAAAT+AGG + chr3_4:18596300-18596319 Msa0493480:three_prime_UTR 30.0%
!! GTTGGAGATTAGTCTAAATA+GGG + chr3_4:18596301-18596320 Msa0493480:three_prime_UTR 30.0%
! ATTAGTCTAAATAGGGAACT+CGG + chr3_4:18596308-18596327 Msa0493480:three_prime_UTR 30.0%
!! TCGTGACTTGTTAATTATAG+AGG + chr3_4:18594184-18594203 Msa0493480:five_prime_UTR 30.0%
TAATTATAGAGGCAATATGC+AGG + chr3_4:18594195-18594214 Msa0493480:exon 30.0%
AGTAAGAAAGTAAAGGGTAA+TGG - chr3_4:18594354-18594373 None:intergenic 30.0%
ATTGCTCAAAACGAATCTAT+TGG + chr3_4:18594379-18594398 Msa0493480:CDS 30.0%
TGATGTCAAAACATTGAACT+TGG + chr3_4:18594525-18594544 Msa0493480:intron 30.0%
TCAAAACATTGAACTTGGTT+AGG + chr3_4:18594530-18594549 Msa0493480:intron 30.0%
TGTACAATTGTGTGATTGTA+TGG - chr3_4:18595269-18595288 None:intergenic 30.0%
AATCGTTGAATTGAATGATC+TGG + chr3_4:18595363-18595382 Msa0493480:intron 30.0%
!! TTAGCTTGTTTCTATAGCTA+AGG - chr3_4:18595588-18595607 None:intergenic 30.0%
!! TCCTATTTTCAAGACGTTTT+AGG - chr3_4:18595638-18595657 None:intergenic 30.0%
!! AAAAAGAGAAAGCATTGAAG+TGG + chr3_4:18595680-18595699 Msa0493480:intron 30.0%
CTTAAACATGTTATTGGTAG+TGG - chr3_4:18595760-18595779 None:intergenic 30.0%
ACGTCTCATCTAATAATGAA+TGG + chr3_4:18595797-18595816 Msa0493480:intron 30.0%
TGAAGGAAAATAATACTCCT+GGG + chr3_4:18595824-18595843 Msa0493480:intron 30.0%
! AGGTGAGATTATAAAGTATC+AGG - chr3_4:18595903-18595922 None:intergenic 30.0%
TGATACTTTATAATCTCACC+TGG + chr3_4:18595902-18595921 Msa0493480:intron 30.0%
TTCTAATCTTCTTCTCTTTC+AGG - chr3_4:18596072-18596091 None:intergenic 30.0%
!!! CTTAACTTTGCCTGTTTTTA+TGG + chr3_4:18596209-18596228 Msa0493480:three_prime_UTR 30.0%
!! TGTTGGAGATTAGTCTAAAT+AGG + chr3_4:18596300-18596319 Msa0493480:three_prime_UTR 30.0%
!! GTTGGAGATTAGTCTAAATA+GGG + chr3_4:18596301-18596320 Msa0493480:three_prime_UTR 30.0%
! ATTAGTCTAAATAGGGAACT+CGG + chr3_4:18596308-18596327 Msa0493480:three_prime_UTR 30.0%
ATAATTAACAAGTCACGAGC+TGG - chr3_4:18594182-18594201 None:intergenic 35.0%
CATCTGCAAGCTAAATATGT+TGG + chr3_4:18594253-18594272 Msa0493480:CDS 35.0%
CAAGCTAAATATGTTGGAAC+TGG + chr3_4:18594259-18594278 Msa0493480:CDS 35.0%
GATAGCTATGCTTCGTATAT+TGG + chr3_4:18594328-18594347 Msa0493480:CDS 35.0%
TTGACACATCAACTTGTAGT+AGG + chr3_4:18594568-18594587 Msa0493480:intron 35.0%
AATACCAGATTTCTACCAGT+AGG + chr3_4:18594912-18594931 Msa0493480:intron 35.0%
ATACCAGATTTCTACCAGTA+GGG + chr3_4:18594913-18594932 Msa0493480:intron 35.0%
AAGAGTCTGAAAAAGTTCTG+AGG - chr3_4:18595003-18595022 None:intergenic 35.0%
TTCAAACAATCCCCAAATTG+TGG - chr3_4:18595034-18595053 None:intergenic 35.0%
CATGCTTAAGAGAGCTAATA+TGG - chr3_4:18595224-18595243 None:intergenic 35.0%
! CATATTAGCTCTCTTAAGCA+TGG + chr3_4:18595222-18595241 Msa0493480:intron 35.0%
! CAGATTTTGTTCAAATTGGG+TGG + chr3_4:18595327-18595346 Msa0493480:intron 35.0%
TTCAATTCAACGATTGACAG+TGG - chr3_4:18595358-18595377 None:intergenic 35.0%
TTGAATGATCTGGATCTTTC+TGG + chr3_4:18595373-18595392 Msa0493480:intron 35.0%
! GAGTTTTTGCGATTCTGATT+AGG + chr3_4:18595395-18595414 Msa0493480:intron 35.0%
! AAGAACCTGTTTTCTTCTTG+CGG + chr3_4:18595455-18595474 Msa0493480:intron 35.0%
! CATGAGAATTTGAAGCCATT+TGG - chr3_4:18595525-18595544 None:intergenic 35.0%
TCAAATTCTCATGTTGCTAC+TGG + chr3_4:18595532-18595551 Msa0493480:intron 35.0%
!! TTGTTTCTATAGCTAAGGAC+AGG - chr3_4:18595583-18595602 None:intergenic 35.0%
!! GGCTTTTTCTTTTAAAGGGA+AGG - chr3_4:18595617-18595636 None:intergenic 35.0%
GCCTAAAACGTCTTGAAAAT+AGG + chr3_4:18595634-18595653 Msa0493480:intron 35.0%
GTGAAGGAAAATAATACTCC+TGG + chr3_4:18595823-18595842 Msa0493480:intron 35.0%
!!! CTTTGCCTGTTTTTATGGTA+TGG + chr3_4:18596214-18596233 Msa0493480:three_prime_UTR 35.0%
!! GTACTTTTCATGGATTGTGT+TGG + chr3_4:18596283-18596302 Msa0493480:three_prime_UTR 35.0%
ATAATTAACAAGTCACGAGC+TGG - chr3_4:18594182-18594201 None:intergenic 35.0%
CATCTGCAAGCTAAATATGT+TGG + chr3_4:18594253-18594272 Msa0493480:CDS 35.0%
CAAGCTAAATATGTTGGAAC+TGG + chr3_4:18594259-18594278 Msa0493480:CDS 35.0%
GATAGCTATGCTTCGTATAT+TGG + chr3_4:18594328-18594347 Msa0493480:CDS 35.0%
TTGACACATCAACTTGTAGT+AGG + chr3_4:18594568-18594587 Msa0493480:intron 35.0%
AATACCAGATTTCTACCAGT+AGG + chr3_4:18594912-18594931 Msa0493480:intron 35.0%
ATACCAGATTTCTACCAGTA+GGG + chr3_4:18594913-18594932 Msa0493480:intron 35.0%
AAGAGTCTGAAAAAGTTCTG+AGG - chr3_4:18595003-18595022 None:intergenic 35.0%
TTCAAACAATCCCCAAATTG+TGG - chr3_4:18595034-18595053 None:intergenic 35.0%
CATGCTTAAGAGAGCTAATA+TGG - chr3_4:18595224-18595243 None:intergenic 35.0%
! CATATTAGCTCTCTTAAGCA+TGG + chr3_4:18595222-18595241 Msa0493480:intron 35.0%
! CAGATTTTGTTCAAATTGGG+TGG + chr3_4:18595327-18595346 Msa0493480:intron 35.0%
TTCAATTCAACGATTGACAG+TGG - chr3_4:18595358-18595377 None:intergenic 35.0%
TTGAATGATCTGGATCTTTC+TGG + chr3_4:18595373-18595392 Msa0493480:intron 35.0%
! GAGTTTTTGCGATTCTGATT+AGG + chr3_4:18595395-18595414 Msa0493480:intron 35.0%
! AAGAACCTGTTTTCTTCTTG+CGG + chr3_4:18595455-18595474 Msa0493480:intron 35.0%
! CATGAGAATTTGAAGCCATT+TGG - chr3_4:18595525-18595544 None:intergenic 35.0%
TCAAATTCTCATGTTGCTAC+TGG + chr3_4:18595532-18595551 Msa0493480:intron 35.0%
!! TTGTTTCTATAGCTAAGGAC+AGG - chr3_4:18595583-18595602 None:intergenic 35.0%
!! GGCTTTTTCTTTTAAAGGGA+AGG - chr3_4:18595617-18595636 None:intergenic 35.0%
GCCTAAAACGTCTTGAAAAT+AGG + chr3_4:18595634-18595653 Msa0493480:intron 35.0%
GTGAAGGAAAATAATACTCC+TGG + chr3_4:18595823-18595842 Msa0493480:intron 35.0%
!!! CTTTGCCTGTTTTTATGGTA+TGG + chr3_4:18596214-18596233 Msa0493480:three_prime_UTR 35.0%
!! GTACTTTTCATGGATTGTGT+TGG + chr3_4:18596283-18596302 Msa0493480:three_prime_UTR 35.0%
! ACAGCGTTACACTTTTATGC+AGG + chr3_4:18594405-18594424 Msa0493480:CDS 40.0%
TATTTCGCTATTGCCTGCTA+TGG - chr3_4:18594657-18594676 None:intergenic 40.0%
! CTAAAGCGTTTGCCACAAAT+AGG + chr3_4:18594706-18594725 Msa0493480:intron 40.0%
CAAATAACCGACCTGAGTTT+GGG - chr3_4:18594752-18594771 None:intergenic 40.0%
TCAGGTCGGTTATTTGGAAA+TGG + chr3_4:18594756-18594775 Msa0493480:intron 40.0%
GTCGGTTATTTGGAAATGGT+AGG + chr3_4:18594760-18594779 Msa0493480:intron 40.0%
GAGAAGATGTTCAAGCGATT+TGG + chr3_4:18594830-18594849 Msa0493480:intron 40.0%
! AAGCGATTTGGCACAGAATT+GGG + chr3_4:18594842-18594861 Msa0493480:intron 40.0%
TTTCCCTACTGGTAGAAATC+TGG - chr3_4:18594919-18594938 None:intergenic 40.0%
AGATTTCTACCAGTAGGGAA+AGG + chr3_4:18594918-18594937 Msa0493480:intron 40.0%
TGAGTTTAAGAAGGGAACAG+AGG + chr3_4:18594962-18594981 Msa0493480:intron 40.0%
GAGTTTAAGAAGGGAACAGA+GGG + chr3_4:18594963-18594982 Msa0493480:intron 40.0%
AGTTTAAGAAGGGAACAGAG+GGG + chr3_4:18594964-18594983 Msa0493480:intron 40.0%
!!! TCTTTTTCGGCACCACAATT+TGG + chr3_4:18595019-18595038 Msa0493480:intron 40.0%
!!! CTTTTTCGGCACCACAATTT+GGG + chr3_4:18595020-18595039 Msa0493480:intron 40.0%
!! TTTTTCGGCACCACAATTTG+GGG + chr3_4:18595021-18595040 Msa0493480:intron 40.0%
TTTGCGATTCTGATTAGGAG+TGG + chr3_4:18595400-18595419 Msa0493480:intron 40.0%
! AGAACCTGTTTTCTTCTTGC+GGG + chr3_4:18595456-18595475 Msa0493480:intron 40.0%
!! AAGAGAAAGCATTGAAGTGG+AGG + chr3_4:18595683-18595702 Msa0493480:intron 40.0%
!! AGAGAAAGCATTGAAGTGGA+GGG + chr3_4:18595684-18595703 Msa0493480:intron 40.0%
CTAGGTGTGATTATAGTGTC+AGG - chr3_4:18595981-18596000 None:intergenic 40.0%
ATTATCGTTGGGATCATCAC+AGG + chr3_4:18596091-18596110 Msa0493480:three_prime_UTR 40.0%
ATCATCACAGGAGAGTTGAA+AGG + chr3_4:18596103-18596122 Msa0493480:three_prime_UTR 40.0%
ACGCTCCATACCATAAAAAC+AGG - chr3_4:18596222-18596241 None:intergenic 40.0%
! GTTTTTATGGTATGGAGCGT+CGG + chr3_4:18596222-18596241 Msa0493480:three_prime_UTR 40.0%
! ACAGCGTTACACTTTTATGC+AGG + chr3_4:18594405-18594424 Msa0493480:CDS 40.0%
TATTTCGCTATTGCCTGCTA+TGG - chr3_4:18594657-18594676 None:intergenic 40.0%
! CTAAAGCGTTTGCCACAAAT+AGG + chr3_4:18594706-18594725 Msa0493480:intron 40.0%
CAAATAACCGACCTGAGTTT+GGG - chr3_4:18594752-18594771 None:intergenic 40.0%
TCAGGTCGGTTATTTGGAAA+TGG + chr3_4:18594756-18594775 Msa0493480:intron 40.0%
GTCGGTTATTTGGAAATGGT+AGG + chr3_4:18594760-18594779 Msa0493480:intron 40.0%
GAGAAGATGTTCAAGCGATT+TGG + chr3_4:18594830-18594849 Msa0493480:intron 40.0%
! AAGCGATTTGGCACAGAATT+GGG + chr3_4:18594842-18594861 Msa0493480:intron 40.0%
TTTCCCTACTGGTAGAAATC+TGG - chr3_4:18594919-18594938 None:intergenic 40.0%
AGATTTCTACCAGTAGGGAA+AGG + chr3_4:18594918-18594937 Msa0493480:intron 40.0%
TGAGTTTAAGAAGGGAACAG+AGG + chr3_4:18594962-18594981 Msa0493480:intron 40.0%
GAGTTTAAGAAGGGAACAGA+GGG + chr3_4:18594963-18594982 Msa0493480:intron 40.0%
AGTTTAAGAAGGGAACAGAG+GGG + chr3_4:18594964-18594983 Msa0493480:intron 40.0%
!!! TCTTTTTCGGCACCACAATT+TGG + chr3_4:18595019-18595038 Msa0493480:intron 40.0%
!!! CTTTTTCGGCACCACAATTT+GGG + chr3_4:18595020-18595039 Msa0493480:intron 40.0%
!! TTTTTCGGCACCACAATTTG+GGG + chr3_4:18595021-18595040 Msa0493480:intron 40.0%
TTTGCGATTCTGATTAGGAG+TGG + chr3_4:18595400-18595419 Msa0493480:intron 40.0%
! AGAACCTGTTTTCTTCTTGC+GGG + chr3_4:18595456-18595475 Msa0493480:intron 40.0%
!! AAGAGAAAGCATTGAAGTGG+AGG + chr3_4:18595683-18595702 Msa0493480:intron 40.0%
!! AGAGAAAGCATTGAAGTGGA+GGG + chr3_4:18595684-18595703 Msa0493480:intron 40.0%
CTAGGTGTGATTATAGTGTC+AGG - chr3_4:18595981-18596000 None:intergenic 40.0%
ATTATCGTTGGGATCATCAC+AGG + chr3_4:18596091-18596110 Msa0493480:three_prime_UTR 40.0%
ATCATCACAGGAGAGTTGAA+AGG + chr3_4:18596103-18596122 Msa0493480:three_prime_UTR 40.0%
ACGCTCCATACCATAAAAAC+AGG - chr3_4:18596222-18596241 None:intergenic 40.0%
! GTTTTTATGGTATGGAGCGT+CGG + chr3_4:18596222-18596241 Msa0493480:three_prime_UTR 40.0%
AGCTTGCAGATGCTCAAGTT+GGG - chr3_4:18594245-18594264 None:intergenic 45.0%
! TAGCTTGCAGATGCTCAAGT+TGG - chr3_4:18594246-18594265 None:intergenic 45.0%
AGCAGGCAATAGCGAAATAG+CGG + chr3_4:18594658-18594677 Msa0493480:intron 45.0%
TTTGCCACAAATAGGCGATG+AGG + chr3_4:18594714-18594733 Msa0493480:intron 45.0%
CCAAATAACCGACCTGAGTT+TGG - chr3_4:18594753-18594772 None:intergenic 45.0%
CCAAACTCAGGTCGGTTATT+TGG + chr3_4:18594750-18594769 Msa0493480:intron 45.0%
AATGGTAGGCTTAGCTAGAG+AGG + chr3_4:18594774-18594793 Msa0493480:intron 45.0%
! CAAGCGATTTGGCACAGAAT+TGG + chr3_4:18594841-18594860 Msa0493480:intron 45.0%
! AGCGATTTGGCACAGAATTG+GGG + chr3_4:18594843-18594862 Msa0493480:intron 45.0%
TACAACTTTGCTTGCCCTCA+GGG + chr3_4:18595285-18595304 Msa0493480:intron 45.0%
TTAGCACTCTTAGTCCCTGA+GGG - chr3_4:18595302-18595321 None:intergenic 45.0%
TTTAGCACTCTTAGTCCCTG+AGG - chr3_4:18595303-18595322 None:intergenic 45.0%
CTAACCCGCAAGAAGAAAAC+AGG - chr3_4:18595463-18595482 None:intergenic 45.0%
TTCTCATGTTGCTACTGGTG+AGG + chr3_4:18595537-18595556 Msa0493480:intron 45.0%
AGCTTGCAGATGCTCAAGTT+GGG - chr3_4:18594245-18594264 None:intergenic 45.0%
! TAGCTTGCAGATGCTCAAGT+TGG - chr3_4:18594246-18594265 None:intergenic 45.0%
AGCAGGCAATAGCGAAATAG+CGG + chr3_4:18594658-18594677 Msa0493480:intron 45.0%
TTTGCCACAAATAGGCGATG+AGG + chr3_4:18594714-18594733 Msa0493480:intron 45.0%
CCAAATAACCGACCTGAGTT+TGG - chr3_4:18594753-18594772 None:intergenic 45.0%
CCAAACTCAGGTCGGTTATT+TGG + chr3_4:18594750-18594769 Msa0493480:intron 45.0%
AATGGTAGGCTTAGCTAGAG+AGG + chr3_4:18594774-18594793 Msa0493480:intron 45.0%
! CAAGCGATTTGGCACAGAAT+TGG + chr3_4:18594841-18594860 Msa0493480:intron 45.0%
! AGCGATTTGGCACAGAATTG+GGG + chr3_4:18594843-18594862 Msa0493480:intron 45.0%
TACAACTTTGCTTGCCCTCA+GGG + chr3_4:18595285-18595304 Msa0493480:intron 45.0%
TTAGCACTCTTAGTCCCTGA+GGG - chr3_4:18595302-18595321 None:intergenic 45.0%
TTTAGCACTCTTAGTCCCTG+AGG - chr3_4:18595303-18595322 None:intergenic 45.0%
CTAACCCGCAAGAAGAAAAC+AGG - chr3_4:18595463-18595482 None:intergenic 45.0%
TTCTCATGTTGCTACTGGTG+AGG + chr3_4:18595537-18595556 Msa0493480:intron 45.0%
GCAATATGCAGGCGAGTGAT+AGG + chr3_4:18594206-18594225 Msa0493480:exon 50.0%
! GCAATAGCGAAATAGCGGAG+AGG + chr3_4:18594663-18594682 Msa0493480:intron 50.0%
! GCGAAATAGCGGAGAGGATT+AGG + chr3_4:18594669-18594688 Msa0493480:intron 50.0%
CTCTCCTCATCGCCTATTTG+TGG - chr3_4:18594721-18594740 None:intergenic 50.0%
! ATAGGCGATGAGGAGAGTGT+TGG + chr3_4:18594724-18594743 Msa0493480:intron 50.0%
!! GAGTGTTGGTACCCAAACTC+AGG + chr3_4:18594738-18594757 Msa0493480:intron 50.0%
GTTGGTACCCAAACTCAGGT+CGG + chr3_4:18594742-18594761 Msa0493480:intron 50.0%
! AGAATTGGGGCCTTTGGGTT+GGG + chr3_4:18594856-18594875 Msa0493480:intron 50.0%
AATCCCAAGTCCCAACCCAA+AGG - chr3_4:18594869-18594888 None:intergenic 50.0%
CCTCTCTTTCCTTTCCCTAC+TGG - chr3_4:18594930-18594949 None:intergenic 50.0%
CCAGTAGGGAAAGGAAAGAG+AGG + chr3_4:18594927-18594946 Msa0493480:intron 50.0%
GTACAACTTTGCTTGCCCTC+AGG + chr3_4:18595284-18595303 Msa0493480:intron 50.0%
GCGATTCTGATTAGGAGTGG+TGG + chr3_4:18595403-18595422 Msa0493480:intron 50.0%
CAGAAAATGCTCCTGCCATG+TGG + chr3_4:18596039-18596058 Msa0493480:intron 50.0%
CTTTCAGGAGCAAGACCACA+TGG - chr3_4:18596057-18596076 None:intergenic 50.0%
GCAATATGCAGGCGAGTGAT+AGG + chr3_4:18594206-18594225 Msa0493480:exon 50.0%
! GCAATAGCGAAATAGCGGAG+AGG + chr3_4:18594663-18594682 Msa0493480:intron 50.0%
! GCGAAATAGCGGAGAGGATT+AGG + chr3_4:18594669-18594688 Msa0493480:intron 50.0%
CTCTCCTCATCGCCTATTTG+TGG - chr3_4:18594721-18594740 None:intergenic 50.0%
! ATAGGCGATGAGGAGAGTGT+TGG + chr3_4:18594724-18594743 Msa0493480:intron 50.0%
!! GAGTGTTGGTACCCAAACTC+AGG + chr3_4:18594738-18594757 Msa0493480:intron 50.0%
GTTGGTACCCAAACTCAGGT+CGG + chr3_4:18594742-18594761 Msa0493480:intron 50.0%
! AGAATTGGGGCCTTTGGGTT+GGG + chr3_4:18594856-18594875 Msa0493480:intron 50.0%
AATCCCAAGTCCCAACCCAA+AGG - chr3_4:18594869-18594888 None:intergenic 50.0%
CCTCTCTTTCCTTTCCCTAC+TGG - chr3_4:18594930-18594949 None:intergenic 50.0%
CCAGTAGGGAAAGGAAAGAG+AGG + chr3_4:18594927-18594946 Msa0493480:intron 50.0%
GTACAACTTTGCTTGCCCTC+AGG + chr3_4:18595284-18595303 Msa0493480:intron 50.0%
GCGATTCTGATTAGGAGTGG+TGG + chr3_4:18595403-18595422 Msa0493480:intron 50.0%
CAGAAAATGCTCCTGCCATG+TGG + chr3_4:18596039-18596058 Msa0493480:intron 50.0%
CTTTCAGGAGCAAGACCACA+TGG - chr3_4:18596057-18596076 None:intergenic 50.0%
CTGTGCTGTGTTGCCATAGC+AGG + chr3_4:18594641-18594660 Msa0493480:intron 55.0%
TGGCACAGAATTGGGGCCTT+TGG + chr3_4:18594850-18594869 Msa0493480:intron 55.0%
GGCACAGAATTGGGGCCTTT+GGG + chr3_4:18594851-18594870 Msa0493480:intron 55.0%
CAGAATTGGGGCCTTTGGGT+TGG + chr3_4:18594855-18594874 Msa0493480:intron 55.0%
AAGAAGGGAACAGAGGGGCA+TGG + chr3_4:18594969-18594988 Msa0493480:intron 55.0%
ATGACGCGCATGCTAGGGTT+AGG + chr3_4:18595430-18595449 Msa0493480:intron 55.0%
CTGTGCTGTGTTGCCATAGC+AGG + chr3_4:18594641-18594660 Msa0493480:intron 55.0%
TGGCACAGAATTGGGGCCTT+TGG + chr3_4:18594850-18594869 Msa0493480:intron 55.0%
GGCACAGAATTGGGGCCTTT+GGG + chr3_4:18594851-18594870 Msa0493480:intron 55.0%
CAGAATTGGGGCCTTTGGGT+TGG + chr3_4:18594855-18594874 Msa0493480:intron 55.0%
AAGAAGGGAACAGAGGGGCA+TGG + chr3_4:18594969-18594988 Msa0493480:intron 55.0%
ATGACGCGCATGCTAGGGTT+AGG + chr3_4:18595430-18595449 Msa0493480:intron 55.0%
!! GGGCCTTTGGGTTGGGACTT+GGG + chr3_4:18594863-18594882 Msa0493480:intron 60.0%
GTCGCATGACGCGCATGCTA+GGG + chr3_4:18595425-18595444 Msa0493480:intron 60.0%
CAGGAGCAAGACCACATGGC+AGG - chr3_4:18596053-18596072 None:intergenic 60.0%
!! GGGCCTTTGGGTTGGGACTT+GGG + chr3_4:18594863-18594882 Msa0493480:intron 60.0%
GTCGCATGACGCGCATGCTA+GGG + chr3_4:18595425-18595444 Msa0493480:intron 60.0%
CAGGAGCAAGACCACATGGC+AGG - chr3_4:18596053-18596072 None:intergenic 60.0%
!! GGGGCCTTTGGGTTGGGACT+TGG + chr3_4:18594862-18594881 Msa0493480:intron 65.0%
GGTCGCATGACGCGCATGCT+AGG + chr3_4:18595424-18595443 Msa0493480:intron 65.0%
!! GGGGCCTTTGGGTTGGGACT+TGG + chr3_4:18594862-18594881 Msa0493480:intron 65.0%
GGTCGCATGACGCGCATGCT+AGG + chr3_4:18595424-18595443 Msa0493480:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 18594177 18596404 18594177 ID=Msa0493480;Name=Msa0493480
chr3_4 mRNA 18594177 18596404 18594177 ID=Msa0493480-mRNA-1;Parent=Msa0493480;Name=Msa0493480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|2|315|87
chr3_4 exon 18594177 18594426 18594177 ID=Msa0493480-mRNA-1:exon:5100;Parent=Msa0493480-mRNA-1
chr3_4 exon 18596042 18596404 18596042 ID=Msa0493480-mRNA-1:exon:5101;Parent=Msa0493480-mRNA-1
chr3_4 five_prime_UTR 18594177 18594210 18594177 ID=Msa0493480-mRNA-1:five_prime_utr;Parent=Msa0493480-mRNA-1
chr3_4 CDS 18594211 18594426 18594211 ID=Msa0493480-mRNA-1:cds;Parent=Msa0493480-mRNA-1
chr3_4 CDS 18596042 18596089 18596042 ID=Msa0493480-mRNA-1:cds;Parent=Msa0493480-mRNA-1
chr3_4 three_prime_UTR 18596090 18596404 18596090 ID=Msa0493480-mRNA-1:three_prime_utr;Parent=Msa0493480-mRNA-1
Gene Sequence

>Msa0493480

ATGCAGGCGAGTGATAGGTTTAACATAAATTCCCAACTTGAGCATCTGCAAGCTAAATATGTTGGAACTGGTCATGCTGATATCAATAGATTTGAATGGGCTGTGAATATTCAACGTGATAGCTATGCTTCGTATATTGGCCATTACCCTTTACTTTCTTACTTTTCTATTGCTCAAAACGAATCTATTGGTAGACAGCGTTACACTTTTATGCAGAAAATGCTCCTGCCATGTGGTCTTGCTCCTGAAAGAGAAGAAGATTAG

Protein sequence

>Msa0493480

MQASDRFNINSQLEHLQAKYVGTGHADINRFEWAVNIQRDSYASYIGHYPLLSYFSIAQNESIGRQRYTFMQKMLLPCGLAPEREED*