AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0594800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 119 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTGTGTGTTACTGAATT+TGG 0.170925 4_2:+23101862 Msa0594800:CDS
TTCAGGTATCTCACCCATTT+TGG 0.194693 4_2:-23103677 None:intergenic
AGACGTAAATTTATTTGTTT+TGG 0.203943 4_2:+23104069 Msa0594800:three_prime_UTR
TGCTGTGTTATGGCTATCTT+TGG 0.237402 4_2:+23105835 Msa0594800:three_prime_UTR
TTGTTCTTAAAGAGCCAAAA+TGG 0.262822 4_2:+23103663 Msa0594800:three_prime_UTR
TAGATCACGTAAAGCTCTTT+TGG 0.262973 4_2:+23101906 Msa0594800:CDS
ATCCCTGCTTAATATATTAG+AGG 0.264131 4_2:-23103420 None:intergenic
GGCTTTGAAGATTCAACTTC+AGG 0.266206 4_2:-23103694 None:intergenic
TTTCGGTTGGATTATCAAAA+TGG 0.280038 4_2:+23102922 Msa0594800:CDS
TTGAATTAACGTTGACGAAT+TGG 0.301436 4_2:-23101723 None:intergenic
GATTTCAAAGTCTTTCAAAT+TGG 0.322234 4_2:-23103558 None:intergenic
TGAACTTTCCAACAGATGTT+TGG 0.325943 4_2:+23103591 Msa0594800:three_prime_UTR
AAGTACGAACTTTCTGCATT+AGG 0.328303 4_2:-23104045 None:intergenic
ACATGAAACGGCAAACATTA+AGG 0.334447 4_2:+23103955 Msa0594800:three_prime_UTR
ATGCCAGTGATCTCAATTCT+TGG 0.334479 4_2:+23104342 Msa0594800:three_prime_UTR
AATTCAACAAAACATAAATA+AGG 0.339090 4_2:+23101739 Msa0594800:CDS
GAACTTTCCAACAGATGTTT+GGG 0.347879 4_2:+23103592 Msa0594800:three_prime_UTR
GTGCGGGTAGCAGCTCTTCC+TGG 0.352659 4_2:+23105921 Msa0594800:three_prime_UTR
TTTCATTGATTGCTGTGTTA+TGG 0.354747 4_2:+23105825 Msa0594800:three_prime_UTR
GTTATGGCTATCTTTGGATT+TGG 0.359446 4_2:+23105841 Msa0594800:three_prime_UTR
AATGTTTGCCGTTTCATGTT+TGG 0.366928 4_2:-23103951 None:intergenic
CAACAAGTTGGCAGGATGCC+TGG 0.376214 4_2:+23104004 Msa0594800:three_prime_UTR
CGGATTTCTTCAACTGGATC+AGG 0.377073 4_2:-23103980 None:intergenic
TTTATTAGAAGCTAAAACTT+TGG 0.377508 4_2:-23103384 None:intergenic
GAAGAAGAAGAAATATCAAT+AGG 0.381832 4_2:-23101958 None:intergenic
TCGAAGTGTAATACATAGAT+TGG 0.392545 4_2:+23103316 Msa0594800:three_prime_UTR
CAGATGTTTGGGATTTCCTT+GGG 0.397990 4_2:+23103603 Msa0594800:three_prime_UTR
AAAGAATCTCATTGATCATC+AGG 0.399245 4_2:+23104198 Msa0594800:three_prime_UTR
TGTTGACGGATTTCTTCAAC+TGG 0.401246 4_2:-23103986 None:intergenic
GCTACCCGCACAAAATTTCC+TGG 0.417360 4_2:-23105909 None:intergenic
ACAGATGTTTGGGATTTCCT+TGG 0.426261 4_2:+23103602 Msa0594800:three_prime_UTR
TTATCTCGGGCTGTGCCTCC+TGG 0.432906 4_2:+23103233 Msa0594800:three_prime_UTR
AGATGGATCTGAAGAGCTTT+CGG 0.433864 4_2:+23102905 Msa0594800:intron
TTGAAAGACTTTGAAATCCA+TGG 0.438972 4_2:+23103563 Msa0594800:three_prime_UTR
CAAGACAATCTACTTGCATC+TGG 0.441632 4_2:+23103809 Msa0594800:three_prime_UTR
CCAAAGTGACCTGCTTCTCC+CGG 0.444717 4_2:-23105763 None:intergenic
GGTGGAGATGCCGAGGCTAA+TGG 0.450979 4_2:+23103050 Msa0594800:three_prime_UTR
CAATTATGCTTCGGCATCAA+AGG 0.453952 4_2:+23103358 Msa0594800:three_prime_UTR
CTCTTCTTCCAAACATGAAA+CGG 0.457428 4_2:+23103943 Msa0594800:three_prime_UTR
GGTCCGAGGTTGAAAAGGTC+CGG 0.457513 4_2:+23105744 Msa0594800:intron
GTGCCTCTAATATATTAAGC+AGG 0.461361 4_2:+23103417 Msa0594800:three_prime_UTR
AACAAGTTGGCAGGATGCCT+GGG 0.465917 4_2:+23104005 Msa0594800:three_prime_UTR
TTGAGCATGCCTCACATTCG+AGG 0.476058 4_2:-23103636 None:intergenic
AAAAGTCTGATATCTTATCT+CGG 0.477926 4_2:+23103219 Msa0594800:three_prime_UTR
TGAAAAGGTCCGGGAGAAGC+AGG 0.479443 4_2:+23105754 Msa0594800:three_prime_UTR
ATCAGTTCTAAAGTTAAGTC+AGG 0.481166 4_2:+23103281 Msa0594800:three_prime_UTR
TGTTCAATCACAGCAGGATC+AGG 0.490358 4_2:-23103869 None:intergenic
ATCCAGGTCCGAGGTTGAAA+AGG 0.496660 4_2:+23105739 Msa0594800:intron
GGATCTGAAGAGCTTTCGGT+TGG 0.496922 4_2:+23102909 Msa0594800:CDS
TCGAAATCCGTGTTCTGTGG+TGG 0.498513 4_2:+23103457 Msa0594800:three_prime_UTR
GCTTCTAATAAAGAAGGAAA+AGG 0.498751 4_2:+23103395 Msa0594800:three_prime_UTR
TGTTCTTAAAGAGCCAAAAT+GGG 0.500054 4_2:+23103664 Msa0594800:three_prime_UTR
GCATCCTGCCAACTTGTTGA+CGG 0.500920 4_2:-23104000 None:intergenic
AAAGTCTGATATCTTATCTC+GGG 0.500962 4_2:+23103220 Msa0594800:three_prime_UTR
CCGGGAGAAGCAGGTCACTT+TGG 0.502657 4_2:+23105763 Msa0594800:three_prime_UTR
AGGAAATCCCAAACATCTGT+TGG 0.507573 4_2:-23103599 None:intergenic
GTCTTGATGAATTCAAGAGC+AGG 0.514995 4_2:+23103255 Msa0594800:three_prime_UTR
GAAGAAGAGATATCTGAAGC+AGG 0.516512 4_2:-23103929 None:intergenic
TGCAGAATACAATTATGCTT+CGG 0.521102 4_2:+23103349 Msa0594800:three_prime_UTR
TTGGAAAGTTCAGACTTCCA+TGG 0.523368 4_2:-23103580 None:intergenic
TGATGCTTGCTTTCCGTCGG+AGG 0.525517 4_2:+23103010 Msa0594800:three_prime_UTR
GTGTGTTACTGAATTTGGAT+TGG 0.526301 4_2:+23101867 Msa0594800:CDS
CGAAATCCGTGTTCTGTGGT+GGG 0.532246 4_2:+23103458 Msa0594800:three_prime_UTR
CAGAGATTTCACAAAATCCA+TGG 0.536981 4_2:-23102956 None:intergenic
TGAACATGTTCAATCACAGC+AGG 0.538033 4_2:-23103875 None:intergenic
CTCTTGAATTCATCAAGACC+AGG 0.538218 4_2:-23103251 None:intergenic
TTAGTGAGTCGCACAATGGT+AGG 0.541618 4_2:+23103078 Msa0594800:three_prime_UTR
GTCCGAGGTTGAAAAGGTCC+GGG 0.545030 4_2:+23105745 Msa0594800:three_prime_UTR
AAATCCGTCAACAAGTTGGC+AGG 0.547210 4_2:+23103996 Msa0594800:three_prime_UTR
AATTATGCTTCGGCATCAAA+GGG 0.548259 4_2:+23103359 Msa0594800:three_prime_UTR
GAGGCTTTAATATACTCTAA+AGG 0.549010 4_2:+23103029 Msa0594800:three_prime_UTR
TCGCACAATGGTAGGGAAAG+TGG 0.550692 4_2:+23103086 Msa0594800:three_prime_UTR
GCAGGTCACTTTGGAAAACA+AGG 0.551081 4_2:+23105772 Msa0594800:three_prime_UTR
TTGATAGAACAAATAACTCC+AGG 0.552685 4_2:+23105891 Msa0594800:three_prime_UTR
AGTCTTTCAAATTGGAAGAG+TGG 0.555467 4_2:-23103550 None:intergenic
GGTGGGTAAATTTGTCATCA+TGG 0.555748 4_2:+23103475 Msa0594800:three_prime_UTR
TAATTGTATTCTGCACCGCC+AGG 0.555812 4_2:-23103341 None:intergenic
AATCTACTTGCATCTGGAGA+AGG 0.555840 4_2:+23103815 Msa0594800:three_prime_UTR
CTTCCAAGAATTGAGATCAC+TGG 0.557290 4_2:-23104345 None:intergenic
CAATCACAGCAGGATCAGGA+TGG 0.558041 4_2:-23103865 None:intergenic
GGAACTTTCAGAAGAAACCT+TGG 0.560587 4_2:+23103496 Msa0594800:three_prime_UTR
AGTGGTGCTTATGCGGTACC+TGG 0.565403 4_2:+23103104 Msa0594800:three_prime_UTR
TAGTGAGTCGCACAATGGTA+GGG 0.565462 4_2:+23103079 Msa0594800:three_prime_UTR
TCTAAAGTTAAGTCAGGCAC+TGG 0.565512 4_2:+23103287 Msa0594800:three_prime_UTR
CGAATGTGAGGCATGCTCAA+AGG 0.565768 4_2:+23103639 Msa0594800:three_prime_UTR
AATCACAGCAGGATCAGGAT+GGG 0.580916 4_2:-23103864 None:intergenic
AGAGATATCTGAAGCAGGGA+CGG 0.584287 4_2:-23103924 None:intergenic
ATCCTCCAGCATCCTCTCAA+CGG 0.584718 4_2:-23103774 None:intergenic
AATTGATGCTTGCTTTCCGT+CGG 0.586745 4_2:+23103007 Msa0594800:three_prime_UTR
ATCTTGAGAACAGTATCCCC+AGG 0.590052 4_2:-23104022 None:intergenic
CTCTAAAGGTGGAGATGCCG+AGG 0.590767 4_2:+23103043 Msa0594800:three_prime_UTR
AATTTACCCACCACAGAACA+CGG 0.592732 4_2:-23103464 None:intergenic
GAAGAAATCCGTCAACAAGT+TGG 0.592762 4_2:+23103992 Msa0594800:three_prime_UTR
GAGTATATTAAAGCCTCCGA+CGG 0.597479 4_2:-23103023 None:intergenic
TGCCTCTAATATATTAAGCA+GGG 0.599484 4_2:+23103418 Msa0594800:three_prime_UTR
GGATGCCGTTGAGAGGATGC+TGG 0.600025 4_2:+23103769 Msa0594800:three_prime_UTR
GTAATACATAGATTGGAGCC+TGG 0.603227 4_2:+23103323 Msa0594800:three_prime_UTR
TTCTCAATAATCCAGGTCCG+AGG 0.605977 4_2:+23105730 Msa0594800:intron
ATCACAGCAGGATCAGGATG+GGG 0.610550 4_2:-23103863 None:intergenic
TTGGTGTGGATGCCGTTGAG+AGG 0.612570 4_2:+23103762 Msa0594800:three_prime_UTR
ACTAACTAAACCATTAGCCT+CGG 0.613554 4_2:-23103060 None:intergenic
TATTTCTATAGTATCTACCA+AGG 0.616012 4_2:-23103513 None:intergenic
AAAGAGTATAGCAAAGACAC+AGG 0.618523 4_2:+23104136 Msa0594800:three_prime_UTR
TCTTCGAAATCCGTGTTCTG+TGG 0.620035 4_2:+23103454 Msa0594800:three_prime_UTR
AATAAAATTCAGAACCGTAG+TGG 0.621096 4_2:-23103715 None:intergenic
TTGAATCTTCAAAGCCACTA+CGG 0.624116 4_2:+23103701 Msa0594800:three_prime_UTR
AAATGGAATGAAGTGAACCA+TGG 0.624684 4_2:+23102939 Msa0594800:exon
AAGAAGAGATATCTGAAGCA+GGG 0.630258 4_2:-23103928 None:intergenic
GCTTTAATATACTCTAAAGG+TGG 0.636410 4_2:+23103032 Msa0594800:three_prime_UTR
TAGGGAAAGTGGTGCTTATG+CGG 0.637556 4_2:+23103097 Msa0594800:three_prime_UTR
TCGAGGCAGTAAAATTCCCA+AGG 0.650182 4_2:-23103619 None:intergenic
TCTTGATGAATTCAAGAGCA+GGG 0.653108 4_2:+23103256 Msa0594800:three_prime_UTR
ACTCAGTAAAAGAAGAAACC+AGG 0.664514 4_2:-23105939 None:intergenic
ACAAGTTGGCAGGATGCCTG+GGG 0.671945 4_2:+23104006 Msa0594800:three_prime_UTR
CAGGTCACTTTGGAAAACAA+GGG 0.692624 4_2:+23105773 Msa0594800:three_prime_UTR
TTAGTTAGTGAGTCGCACAA+TGG 0.708809 4_2:+23103074 Msa0594800:three_prime_UTR
TTGAATTCATCAAGACCAGG+AGG 0.717792 4_2:-23103248 None:intergenic
TGCCGTTGAGAGGATGCTGG+AGG 0.725275 4_2:+23103772 Msa0594800:three_prime_UTR
ATACATAGATTGGAGCCTGG+CGG 0.731549 4_2:+23103326 Msa0594800:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAACAAAACATAAATA+AGG + chr4_2:23101739-23101758 Msa0594800:CDS 15.0%
!!! TTTTTTTTATAGATAGATGT+TGG + chr4_2:23102445-23102464 Msa0594800:intron 15.0%
!! AAAATTAATAGAAAGTAGTA+TGG - chr4_2:23104291-23104310 None:intergenic 15.0%
!!! ATACTACTTTCTATTAATTT+TGG + chr4_2:23104290-23104309 Msa0594800:intron 15.0%
!!! TTAATTTTGGAAATGATTTT+TGG + chr4_2:23104303-23104322 Msa0594800:intron 15.0%
!!! TAAACCAAATTTTCAATTTA+AGG + chr4_2:23105002-23105021 Msa0594800:intron 15.0%
!! AATGATGTTGTTAAATTTGT+AGG + chr4_2:23101838-23101857 Msa0594800:intron 20.0%
!! ATGATGTTGTTAAATTTGTA+GGG + chr4_2:23101839-23101858 Msa0594800:intron 20.0%
!!! CAATTTTTATGAACTTTCTT+TGG + chr4_2:23101996-23102015 Msa0594800:CDS 20.0%
!! TATTTGAGTCTATCTAAAAA+GGG - chr4_2:23102787-23102806 None:intergenic 20.0%
!! TTATTATCTTTGTATGTAGA+TGG + chr4_2:23102888-23102907 Msa0594800:intron 20.0%
!!! TTTTCTTTATTTATATCACC+AGG - chr4_2:23103125-23103144 None:intergenic 20.0%
!! TTTATTAGAAGCTAAAACTT+TGG - chr4_2:23103387-23103406 None:intergenic 20.0%
!!! AGACGTAAATTTATTTGTTT+TGG + chr4_2:23104069-23104088 Msa0594800:three_prime_UTR 20.0%
!!! TAAATTTATTTGTTTTGGAG+CGG + chr4_2:23104074-23104093 Msa0594800:three_prime_UTR 20.0%
!! AACTACTTAATTACTCATAA+CGG + chr4_2:23104587-23104606 Msa0594800:intron 20.0%
!! ACTATACATTAAAGTAATCA+AGG + chr4_2:23104710-23104729 Msa0594800:intron 20.0%
!!! TAAATTAGTTTCTGTAACTT+CGG - chr4_2:23105070-23105089 None:intergenic 20.0%
!! GTTACAGAAACTAATTTAAA+AGG + chr4_2:23105072-23105091 Msa0594800:intron 20.0%
!!! AAAATTTTTCTCAGTCATAA+AGG - chr4_2:23105226-23105245 None:intergenic 20.0%
!!! GAAAAATTTTGAGAAAAAGA+AGG + chr4_2:23105236-23105255 Msa0594800:intron 20.0%
!! AATTAGAAGTTTATTCTAGA+AGG - chr4_2:23105447-23105466 None:intergenic 20.0%
!! CTAGAATAAACTTCTAATTT+CGG + chr4_2:23105448-23105467 Msa0594800:intron 20.0%
!! TAGAATAAACTTCTAATTTC+GGG + chr4_2:23105449-23105468 Msa0594800:intron 20.0%
!! AAATTGTGTGTTACTGAATT+TGG + chr4_2:23101862-23101881 Msa0594800:CDS 25.0%
! GAAGAAGAAGAAATATCAAT+AGG - chr4_2:23101961-23101980 None:intergenic 25.0%
!!! TTTCTTTGGTTTTTGTTTTG+TGG + chr4_2:23102010-23102029 Msa0594800:CDS 25.0%
!!! TTCTTTGGTTTTTGTTTTGT+GGG + chr4_2:23102011-23102030 Msa0594800:CDS 25.0%
! CAAGCATAAACATTGATATA+TGG + chr4_2:23102120-23102139 Msa0594800:intron 25.0%
! ATGTAGCATAAACATTGATA+TGG + chr4_2:23102269-23102288 Msa0594800:intron 25.0%
!! TTTTTATAGATAGATGTTGG+TGG + chr4_2:23102448-23102467 Msa0594800:intron 25.0%
!! TTAAACAAGTAGTTTGTAAG+AGG - chr4_2:23102526-23102545 None:intergenic 25.0%
!!! TGTTAATGGTTAGTTTGTTT+TGG + chr4_2:23102598-23102617 Msa0594800:intron 25.0%
!!! GTTAATGGTTAGTTTGTTTT+GGG + chr4_2:23102599-23102618 Msa0594800:intron 25.0%
!!! TTAATGGTTAGTTTGTTTTG+GGG + chr4_2:23102600-23102619 Msa0594800:intron 25.0%
! CTATTTGAGTCTATCTAAAA+AGG - chr4_2:23102788-23102807 None:intergenic 25.0%
!! CTTTTTAGATAGACTCAAAT+AGG + chr4_2:23102786-23102805 Msa0594800:intron 25.0%
!!! CATATCTCATAGTCTTATAT+TGG + chr4_2:23102860-23102879 Msa0594800:intron 25.0%
! AAAAGTCTGATATCTTATCT+CGG + chr4_2:23103219-23103238 Msa0594800:three_prime_UTR 25.0%
!!! GTTTTAGCTTCTAATAAAGA+AGG + chr4_2:23103389-23103408 Msa0594800:three_prime_UTR 25.0%
!! TATTTCTATAGTATCTACCA+AGG - chr4_2:23103516-23103535 None:intergenic 25.0%
! GATTTCAAAGTCTTTCAAAT+TGG - chr4_2:23103561-23103580 None:intergenic 25.0%
! TGTTCATAAAAAAACTCTTG+AGG + chr4_2:23103892-23103911 Msa0594800:three_prime_UTR 25.0%
! GTTCATAAAAAAACTCTTGA+GGG + chr4_2:23103893-23103912 Msa0594800:three_prime_UTR 25.0%
! TTCATAAAAAAACTCTTGAG+GGG + chr4_2:23103894-23103913 Msa0594800:three_prime_UTR 25.0%
! AAACTTTATAAGCACTACTT+AGG - chr4_2:23104880-23104899 None:intergenic 25.0%
! TAAGTAGTGCTTATAAAGTT+TGG + chr4_2:23104879-23104898 Msa0594800:intron 25.0%
! AAGTAGTGCTTATAAAGTTT+GGG + chr4_2:23104880-23104899 Msa0594800:intron 25.0%
! CCATCCTTAAATTGAAAATT+TGG - chr4_2:23105009-23105028 None:intergenic 25.0%
!! CCAAATTTTCAATTTAAGGA+TGG + chr4_2:23105006-23105025 Msa0594800:intron 25.0%
! TTTATTTACAAACTGATGCA+TGG + chr4_2:23105041-23105060 Msa0594800:intron 25.0%
! GTTGTAATTAGATATACGTT+AGG - chr4_2:23105336-23105355 None:intergenic 25.0%
!! AGTTTATTCTAGAAGGAAAA+GGG - chr4_2:23105440-23105459 None:intergenic 25.0%
!! AAGTTTATTCTAGAAGGAAA+AGG - chr4_2:23105441-23105460 None:intergenic 25.0%
TTGAATTAACGTTGACGAAT+TGG - chr4_2:23101726-23101745 None:intergenic 30.0%
GATATTTCTTCTTCTTCTTC+TGG + chr4_2:23101964-23101983 Msa0594800:CDS 30.0%
!!! TCTTTGGTTTTTGTTTTGTG+GGG + chr4_2:23102012-23102031 Msa0594800:CDS 30.0%
TCATCAGATTAAGTATGTCT+AGG - chr4_2:23102209-23102228 None:intergenic 30.0%
! TCATTTGATAATCCTGTTTG+AGG + chr4_2:23102407-23102426 Msa0594800:intron 30.0%
!! ATGTTGGTGGTTAATTTGTT+TGG + chr4_2:23102461-23102480 Msa0594800:intron 30.0%
!! TGTTGGTGGTTAATTTGTTT+GGG + chr4_2:23102462-23102481 Msa0594800:intron 30.0%
!!! TAATGGTTAGTTTGTTTTGG+GGG + chr4_2:23102601-23102620 Msa0594800:intron 30.0%
TTATGCCTGAAGTTATTCAA+AGG - chr4_2:23102670-23102689 None:intergenic 30.0%
GAATAACTTCAGGCATAAAA+AGG + chr4_2:23102672-23102691 Msa0594800:intron 30.0%
TGGATAATATGGAGAGAAAA+TGG + chr4_2:23102701-23102720 Msa0594800:intron 30.0%
ATAATATGGAGAGAAAATGG+AGG + chr4_2:23102704-23102723 Msa0594800:intron 30.0%
TAGAGAACACTGATAACTTT+AGG + chr4_2:23102741-23102760 Msa0594800:intron 30.0%
TTTCGGTTGGATTATCAAAA+TGG + chr4_2:23102922-23102941 Msa0594800:CDS 30.0%
! GAGGCTTTAATATACTCTAA+AGG + chr4_2:23103029-23103048 Msa0594800:three_prime_UTR 30.0%
! GCTTTAATATACTCTAAAGG+TGG + chr4_2:23103032-23103051 Msa0594800:three_prime_UTR 30.0%
AAAGTCTGATATCTTATCTC+GGG + chr4_2:23103220-23103239 Msa0594800:three_prime_UTR 30.0%
!! ATCAGTTCTAAAGTTAAGTC+AGG + chr4_2:23103281-23103300 Msa0594800:three_prime_UTR 30.0%
TCGAAGTGTAATACATAGAT+TGG + chr4_2:23103316-23103335 Msa0594800:three_prime_UTR 30.0%
TGCAGAATACAATTATGCTT+CGG + chr4_2:23103349-23103368 Msa0594800:three_prime_UTR 30.0%
GCTTCTAATAAAGAAGGAAA+AGG + chr4_2:23103395-23103414 Msa0594800:three_prime_UTR 30.0%
TGCCTCTAATATATTAAGCA+GGG + chr4_2:23103418-23103437 Msa0594800:three_prime_UTR 30.0%
ATCCCTGCTTAATATATTAG+AGG - chr4_2:23103423-23103442 None:intergenic 30.0%
!! TTGAAAGACTTTGAAATCCA+TGG + chr4_2:23103563-23103582 Msa0594800:three_prime_UTR 30.0%
TTGTTCTTAAAGAGCCAAAA+TGG + chr4_2:23103663-23103682 Msa0594800:three_prime_UTR 30.0%
TGTTCTTAAAGAGCCAAAAT+GGG + chr4_2:23103664-23103683 Msa0594800:three_prime_UTR 30.0%
AATAAAATTCAGAACCGTAG+TGG - chr4_2:23103718-23103737 None:intergenic 30.0%
AAAGAATCTCATTGATCATC+AGG + chr4_2:23104198-23104217 Msa0594800:three_prime_UTR 30.0%
!!! TTCAAGATAATGCTGTTTTG+AGG + chr4_2:23104399-23104418 Msa0594800:three_prime_UTR 30.0%
! GTGAACTTTTATCGAAAACA+TGG + chr4_2:23104649-23104668 Msa0594800:intron 30.0%
! ACTTTTATCGAAAACATGGA+AGG + chr4_2:23104653-23104672 Msa0594800:intron 30.0%
TCTCATACCTAAAACAACTA+AGG - chr4_2:23104822-23104841 None:intergenic 30.0%
!!! TTAGTTGTTTTAGGTATGAG+AGG + chr4_2:23104821-23104840 Msa0594800:intron 30.0%
ACTACTTAGGACATATCTTA+AGG - chr4_2:23104867-23104886 None:intergenic 30.0%
! AAAATTTGGTTTAGCAACAG+AGG - chr4_2:23104995-23105014 None:intergenic 30.0%
GTCATAAAGGATCTATCAAT+TGG - chr4_2:23105213-23105232 None:intergenic 30.0%
! TTCAAAAGCTTGTTCATTCA+TGG + chr4_2:23105519-23105538 Msa0594800:intron 30.0%
AGTGTATTATCGTCATATGT+GGG - chr4_2:23105570-23105589 None:intergenic 30.0%
AAGTGTATTATCGTCATATG+TGG - chr4_2:23105571-23105590 None:intergenic 30.0%
CATATGACGATAATACACTT+AGG + chr4_2:23105571-23105590 Msa0594800:intron 30.0%
AGAAGTAGAAAGATTGTCTT+TGG + chr4_2:23105688-23105707 Msa0594800:intron 30.0%
! TGTTCTTTTCTCAATAATCC+AGG + chr4_2:23105723-23105742 Msa0594800:intron 30.0%
! TTTCATTGATTGCTGTGTTA+TGG + chr4_2:23105825-23105844 Msa0594800:three_prime_UTR 30.0%
TTGATAGAACAAATAACTCC+AGG + chr4_2:23105891-23105910 Msa0594800:three_prime_UTR 30.0%
! GTGTGTTACTGAATTTGGAT+TGG + chr4_2:23101867-23101886 Msa0594800:CDS 35.0%
! TAGATCACGTAAAGCTCTTT+TGG + chr4_2:23101906-23101925 Msa0594800:CDS 35.0%
! TGATAATCCTGTTTGAGGTA+CGG + chr4_2:23102412-23102431 Msa0594800:intron 35.0%
!! GTTGGTGGTTAATTTGTTTG+GGG + chr4_2:23102463-23102482 Msa0594800:intron 35.0%
! ACTTGTTTAAAGTCCCAATC+CGG + chr4_2:23102536-23102555 Msa0594800:intron 35.0%
!!! AATGGTTAGTTTGTTTTGGG+GGG + chr4_2:23102602-23102621 Msa0594800:intron 35.0%
CTCTACCTTTGAATAACTTC+AGG + chr4_2:23102662-23102681 Msa0594800:intron 35.0%
! AAAGGAGAGTGTGGATAATA+TGG + chr4_2:23102690-23102709 Msa0594800:intron 35.0%
AAATGGAATGAAGTGAACCA+TGG + chr4_2:23102939-23102958 Msa0594800:exon 35.0%
CAGAGATTTCACAAAATCCA+TGG - chr4_2:23102959-23102978 None:intergenic 35.0%
! ACTAACTAAACCATTAGCCT+CGG - chr4_2:23103063-23103082 None:intergenic 35.0%
TCTTGATGAATTCAAGAGCA+GGG + chr4_2:23103256-23103275 Msa0594800:three_prime_UTR 35.0%
AATTATGCTTCGGCATCAAA+GGG + chr4_2:23103359-23103378 Msa0594800:three_prime_UTR 35.0%
GTGCCTCTAATATATTAAGC+AGG + chr4_2:23103417-23103436 Msa0594800:three_prime_UTR 35.0%
AGTCTTTCAAATTGGAAGAG+TGG - chr4_2:23103553-23103572 None:intergenic 35.0%
TGAACTTTCCAACAGATGTT+TGG + chr4_2:23103591-23103610 Msa0594800:three_prime_UTR 35.0%
GAACTTTCCAACAGATGTTT+GGG + chr4_2:23103592-23103611 Msa0594800:three_prime_UTR 35.0%
TTGAATCTTCAAAGCCACTA+CGG + chr4_2:23103701-23103720 Msa0594800:three_prime_UTR 35.0%
!! CTAAGCGTTGTTGAAGTTTT+TGG + chr4_2:23103743-23103762 Msa0594800:three_prime_UTR 35.0%
! AAGAAGAGATATCTGAAGCA+GGG - chr4_2:23103931-23103950 None:intergenic 35.0%
CTCTTCTTCCAAACATGAAA+CGG + chr4_2:23103943-23103962 Msa0594800:three_prime_UTR 35.0%
! AATGTTTGCCGTTTCATGTT+TGG - chr4_2:23103954-23103973 None:intergenic 35.0%
ACATGAAACGGCAAACATTA+AGG + chr4_2:23103955-23103974 Msa0594800:three_prime_UTR 35.0%
AAGTACGAACTTTCTGCATT+AGG - chr4_2:23104048-23104067 None:intergenic 35.0%
!!! ATTTGTTTTGGAGCGGTATA+TGG + chr4_2:23104081-23104100 Msa0594800:three_prime_UTR 35.0%
! AAAGAGTATAGCAAAGACAC+AGG + chr4_2:23104136-23104155 Msa0594800:three_prime_UTR 35.0%
!!! AAATGATTTTTGGCTCATGC+AGG + chr4_2:23104313-23104332 Msa0594800:intron 35.0%
! TAAAACAACTAAGGTGATGG+AGG - chr4_2:23104813-23104832 None:intergenic 35.0%
!! TCCATCACCTTAGTTGTTTT+AGG + chr4_2:23104812-23104831 Msa0594800:intron 35.0%
ACCTAAAACAACTAAGGTGA+TGG - chr4_2:23104816-23104835 None:intergenic 35.0%
!! ACTAAATTGGCTTGTAAGGT+GGG - chr4_2:23104911-23104930 None:intergenic 35.0%
!! TACTAAATTGGCTTGTAAGG+TGG - chr4_2:23104912-23104931 None:intergenic 35.0%
ACCTTACAAGCCAATTTAGT+AGG + chr4_2:23104911-23104930 Msa0594800:intron 35.0%
CCTTACAAGCCAATTTAGTA+GGG + chr4_2:23104912-23104931 Msa0594800:intron 35.0%
CTAACTCAACCCTACTAAAT+TGG - chr4_2:23104924-23104943 None:intergenic 35.0%
!!! TCAACCCACATTTTAAGACT+CGG + chr4_2:23104946-23104965 Msa0594800:intron 35.0%
AAAGTCAGAGAAAACCCAAT+TGG + chr4_2:23105261-23105280 Msa0594800:intron 35.0%
CATTTAGAAAATTCCTCCAC+TGG - chr4_2:23105297-23105316 None:intergenic 35.0%
CAATTAAGTGGTCAGTTAGT+TGG - chr4_2:23105409-23105428 None:intergenic 35.0%
TTTACGCGTCTTGTCATATT+AGG - chr4_2:23105486-23105505 None:intergenic 35.0%
TTCTACTTCTTAACAAGCTC+TGG - chr4_2:23105678-23105697 None:intergenic 35.0%
GTTATGGCTATCTTTGGATT+TGG + chr4_2:23105841-23105860 Msa0594800:three_prime_UTR 35.0%
! TAACTCCAGGAAATTTTGTG+CGG + chr4_2:23105904-23105923 Msa0594800:three_prime_UTR 35.0%
ACTCAGTAAAAGAAGAAACC+AGG - chr4_2:23105942-23105961 None:intergenic 35.0%
TGCTTATTCTCCTCAGCTTA+TGG + chr4_2:23102037-23102056 Msa0594800:intron 40.0%
TGTAACTGATCCATAAGCTG+AGG - chr4_2:23102050-23102069 None:intergenic 40.0%
AGCTTATGGATCAGTTACAC+AGG + chr4_2:23102051-23102070 Msa0594800:intron 40.0%
TGGTTACGAAGATCAAATCC+CGG + chr4_2:23102499-23102518 Msa0594800:intron 40.0%
! AAGTAGTTTGTAAGAGGTCC+GGG - chr4_2:23102520-23102539 None:intergenic 40.0%
! CAAGTAGTTTGTAAGAGGTC+CGG - chr4_2:23102521-23102540 None:intergenic 40.0%
!! CAGGCACTGACAAATGTTAA+TGG + chr4_2:23102584-23102603 Msa0594800:intron 40.0%
!! GGAGGAATTTGTTGGTAGTA+GGG + chr4_2:23102623-23102642 Msa0594800:intron 40.0%
AGATGGATCTGAAGAGCTTT+CGG + chr4_2:23102905-23102924 Msa0594800:intron 40.0%
AATTGATGCTTGCTTTCCGT+CGG + chr4_2:23103007-23103026 Msa0594800:three_prime_UTR 40.0%
GAGTATATTAAAGCCTCCGA+CGG - chr4_2:23103026-23103045 None:intergenic 40.0%
TTAGTTAGTGAGTCGCACAA+TGG + chr4_2:23103074-23103093 Msa0594800:three_prime_UTR 40.0%
TTGAATTCATCAAGACCAGG+AGG - chr4_2:23103251-23103270 None:intergenic 40.0%
CTCTTGAATTCATCAAGACC+AGG - chr4_2:23103254-23103273 None:intergenic 40.0%
GTCTTGATGAATTCAAGAGC+AGG + chr4_2:23103255-23103274 Msa0594800:three_prime_UTR 40.0%
! TCTAAAGTTAAGTCAGGCAC+TGG + chr4_2:23103287-23103306 Msa0594800:three_prime_UTR 40.0%
GTAATACATAGATTGGAGCC+TGG + chr4_2:23103323-23103342 Msa0594800:three_prime_UTR 40.0%
CAATTATGCTTCGGCATCAA+AGG + chr4_2:23103358-23103377 Msa0594800:three_prime_UTR 40.0%
AATTTACCCACCACAGAACA+CGG - chr4_2:23103467-23103486 None:intergenic 40.0%
GGTGGGTAAATTTGTCATCA+TGG + chr4_2:23103475-23103494 Msa0594800:three_prime_UTR 40.0%
GGAACTTTCAGAAGAAACCT+TGG + chr4_2:23103496-23103515 Msa0594800:three_prime_UTR 40.0%
TTGGAAAGTTCAGACTTCCA+TGG - chr4_2:23103583-23103602 None:intergenic 40.0%
AGGAAATCCCAAACATCTGT+TGG - chr4_2:23103602-23103621 None:intergenic 40.0%
! ACAGATGTTTGGGATTTCCT+TGG + chr4_2:23103602-23103621 Msa0594800:three_prime_UTR 40.0%
! CAGATGTTTGGGATTTCCTT+GGG + chr4_2:23103603-23103622 Msa0594800:three_prime_UTR 40.0%
! ATTTTACTGCCTCGAATGTG+AGG + chr4_2:23103627-23103646 Msa0594800:three_prime_UTR 40.0%
! TTCAGGTATCTCACCCATTT+TGG - chr4_2:23103680-23103699 None:intergenic 40.0%
!! GGCTTTGAAGATTCAACTTC+AGG - chr4_2:23103697-23103716 None:intergenic 40.0%
!!! CGTTGTTGAAGTTTTTGGTG+TGG + chr4_2:23103748-23103767 Msa0594800:three_prime_UTR 40.0%
CAAGACAATCTACTTGCATC+TGG + chr4_2:23103809-23103828 Msa0594800:three_prime_UTR 40.0%
AATCTACTTGCATCTGGAGA+AGG + chr4_2:23103815-23103834 Msa0594800:three_prime_UTR 40.0%
TGAACATGTTCAATCACAGC+AGG - chr4_2:23103878-23103897 None:intergenic 40.0%
! GAAGAAGAGATATCTGAAGC+AGG - chr4_2:23103932-23103951 None:intergenic 40.0%
!! TGTTGACGGATTTCTTCAAC+TGG - chr4_2:23103989-23104008 None:intergenic 40.0%
GAAGAAATCCGTCAACAAGT+TGG + chr4_2:23103992-23104011 Msa0594800:three_prime_UTR 40.0%
ATGCCAGTGATCTCAATTCT+TGG + chr4_2:23104342-23104361 Msa0594800:three_prime_UTR 40.0%
CTTCCAAGAATTGAGATCAC+TGG - chr4_2:23104348-23104367 None:intergenic 40.0%
GTCTTTCTCTCAGTGTTCTA+TGG + chr4_2:23104536-23104555 Msa0594800:intron 40.0%
! TTTTGCCAGACTAACAAGTC+CGG - chr4_2:23104567-23104586 None:intergenic 40.0%
TGAATCAGAATAAACCAGCC+TGG + chr4_2:23104613-23104632 Msa0594800:intron 40.0%
ACTTAGGTGGCAAATTAAGG+CGG - chr4_2:23104763-23104782 None:intergenic 40.0%
!! CTTAATTTGCCACCTAAGTG+CGG + chr4_2:23104764-23104783 Msa0594800:intron 40.0%
!! TTAATTTGCCACCTAAGTGC+GGG + chr4_2:23104765-23104784 Msa0594800:intron 40.0%
!! CTAAATTGGCTTGTAAGGTG+GGG - chr4_2:23104910-23104929 None:intergenic 40.0%
!! CCCTACTAAATTGGCTTGTA+AGG - chr4_2:23104915-23104934 None:intergenic 40.0%
GATGCCGAGTCTTAAAATGT+GGG - chr4_2:23104953-23104972 None:intergenic 40.0%
AGATGCCGAGTCTTAAAATG+TGG - chr4_2:23104954-23104973 None:intergenic 40.0%
!!! ATTTTAAGACTCGGCATCTG+AGG + chr4_2:23104955-23104974 Msa0594800:intron 40.0%
AGAAGCAATAGAACCTAAGG+TGG - chr4_2:23105148-23105167 None:intergenic 40.0%
AGCAGAAGCAATAGAACCTA+AGG - chr4_2:23105151-23105170 None:intergenic 40.0%
ATCTATCAATTGGTCCAACC+TGG - chr4_2:23105203-23105222 None:intergenic 40.0%
GACTAGACAGTAAAGACAGT+TGG - chr4_2:23105384-23105403 None:intergenic 40.0%
CTAGAAGGAAAAGGGATCAA+GGG - chr4_2:23105432-23105451 None:intergenic 40.0%
TCTAGAAGGAAAAGGGATCA+AGG - chr4_2:23105433-23105452 None:intergenic 40.0%
CTTCTAATTTCGGGACTTCT+AGG + chr4_2:23105458-23105477 Msa0594800:intron 40.0%
AGAACACAGCAACCACTAAA+CGG - chr4_2:23105634-23105653 None:intergenic 40.0%
! CAGGTCACTTTGGAAAACAA+GGG + chr4_2:23105773-23105792 Msa0594800:three_prime_UTR 40.0%
TGCTGTGTTATGGCTATCTT+TGG + chr4_2:23105835-23105854 Msa0594800:three_prime_UTR 40.0%
! AACTCCAGGAAATTTTGTGC+GGG + chr4_2:23105905-23105924 Msa0594800:three_prime_UTR 40.0%
ATGGACACACACAGACATGT+CGG + chr4_2:23102288-23102307 Msa0594800:intron 45.0%
GTGTAATCATATGCCACGTC+AGG + chr4_2:23102339-23102358 Msa0594800:intron 45.0%
! AATCCTGTTTGAGGTACGGT+AGG + chr4_2:23102416-23102435 Msa0594800:intron 45.0%
TATCCTACCGTACCTCAAAC+AGG - chr4_2:23102422-23102441 None:intergenic 45.0%
!! GGTGGTTAATTTGTTTGGGG+AGG + chr4_2:23102466-23102485 Msa0594800:intron 45.0%
TTTGGGGAGGAAGAGTTTCT+TGG + chr4_2:23102479-23102498 Msa0594800:intron 45.0%
!! TTTTGGGGGGAGGAATTTGT+TGG + chr4_2:23102615-23102634 Msa0594800:intron 45.0%
!! GGGAGGAATTTGTTGGTAGT+AGG + chr4_2:23102622-23102641 Msa0594800:intron 45.0%
CAGGCATAAAAAGGAGAGTG+TGG + chr4_2:23102681-23102700 Msa0594800:intron 45.0%
TTAGTGAGTCGCACAATGGT+AGG + chr4_2:23103078-23103097 Msa0594800:three_prime_UTR 45.0%
TAGTGAGTCGCACAATGGTA+GGG + chr4_2:23103079-23103098 Msa0594800:three_prime_UTR 45.0%
TAGGGAAAGTGGTGCTTATG+CGG + chr4_2:23103097-23103116 Msa0594800:three_prime_UTR 45.0%
ATACATAGATTGGAGCCTGG+CGG + chr4_2:23103326-23103345 Msa0594800:three_prime_UTR 45.0%
TAATTGTATTCTGCACCGCC+AGG - chr4_2:23103344-23103363 None:intergenic 45.0%
TCTTCGAAATCCGTGTTCTG+TGG + chr4_2:23103454-23103473 Msa0594800:three_prime_UTR 45.0%
TCGAGGCAGTAAAATTCCCA+AGG - chr4_2:23103622-23103641 None:intergenic 45.0%
AATCACAGCAGGATCAGGAT+GGG - chr4_2:23103867-23103886 None:intergenic 45.0%
TGTTCAATCACAGCAGGATC+AGG - chr4_2:23103872-23103891 None:intergenic 45.0%
! AGAGATATCTGAAGCAGGGA+CGG - chr4_2:23103927-23103946 None:intergenic 45.0%
CGGATTTCTTCAACTGGATC+AGG - chr4_2:23103983-23104002 None:intergenic 45.0%
! AAATCCGTCAACAAGTTGGC+AGG + chr4_2:23103996-23104015 Msa0594800:three_prime_UTR 45.0%
ATCTTGAGAACAGTATCCCC+AGG - chr4_2:23104025-23104044 None:intergenic 45.0%
CTGAGAGAAAGACCAAGACA+GGG - chr4_2:23104529-23104548 None:intergenic 45.0%
ACTGAGAGAAAGACCAAGAC+AGG - chr4_2:23104530-23104549 None:intergenic 45.0%
TCAGTGTTCTATGGCCAAAC+CGG + chr4_2:23104545-23104564 Msa0594800:intron 45.0%
ATCAAGGATGCGTTCGAACT+TGG + chr4_2:23104726-23104745 Msa0594800:intron 45.0%
CGCACTTAGGTGGCAAATTA+AGG - chr4_2:23104766-23104785 None:intergenic 45.0%
GACACTAATGACTCCACCTT+AGG + chr4_2:23105132-23105151 Msa0594800:intron 45.0%
CTGGCAGAGCAAAACCAATT+GGG - chr4_2:23105278-23105297 None:intergenic 45.0%
ACTGGCAGAGCAAAACCAAT+TGG - chr4_2:23105279-23105298 None:intergenic 45.0%
!!! AATTGGTTTTGCTCTGCCAG+TGG + chr4_2:23105278-23105297 Msa0594800:intron 45.0%
! AGTTGGCTAGTTAGCTGAAG+TGG - chr4_2:23105367-23105386 None:intergenic 45.0%
AGGGATCAAGGGCAATTAAG+TGG - chr4_2:23105421-23105440 None:intergenic 45.0%
GTTCATTGCCTTCCGTTTAG+TGG + chr4_2:23105619-23105638 Msa0594800:intron 45.0%
TTCTCAATAATCCAGGTCCG+AGG + chr4_2:23105730-23105749 Msa0594800:intron 45.0%
! GCAGGTCACTTTGGAAAACA+AGG + chr4_2:23105772-23105791 Msa0594800:three_prime_UTR 45.0%
AGATTAAGCGTGTCCTGACG+TGG - chr4_2:23102355-23102374 None:intergenic 50.0%
AAAGTCCCAATCCGGACTAC+CGG + chr4_2:23102544-23102563 Msa0594800:intron 50.0%
!!! GGTTAGTTTGTTTTGGGGGG+AGG + chr4_2:23102605-23102624 Msa0594800:intron 50.0%
GGATCTGAAGAGCTTTCGGT+TGG + chr4_2:23102909-23102928 Msa0594800:CDS 50.0%
TCGCACAATGGTAGGGAAAG+TGG + chr4_2:23103086-23103105 Msa0594800:three_prime_UTR 50.0%
TCGAAATCCGTGTTCTGTGG+TGG + chr4_2:23103457-23103476 Msa0594800:three_prime_UTR 50.0%
CGAAATCCGTGTTCTGTGGT+GGG + chr4_2:23103458-23103477 Msa0594800:three_prime_UTR 50.0%
TTGAGCATGCCTCACATTCG+AGG - chr4_2:23103639-23103658 None:intergenic 50.0%
CGAATGTGAGGCATGCTCAA+AGG + chr4_2:23103639-23103658 Msa0594800:three_prime_UTR 50.0%
ATCCTCCAGCATCCTCTCAA+CGG - chr4_2:23103777-23103796 None:intergenic 50.0%
ATCACAGCAGGATCAGGATG+GGG - chr4_2:23103866-23103885 None:intergenic 50.0%
CAATCACAGCAGGATCAGGA+TGG - chr4_2:23103868-23103887 None:intergenic 50.0%
!! GCATCCTGCCAACTTGTTGA+CGG - chr4_2:23104003-23104022 None:intergenic 50.0%
! AACAAGTTGGCAGGATGCCT+GGG + chr4_2:23104005-23104024 Msa0594800:three_prime_UTR 50.0%
CCAGACTAACAAGTCCGGTT+TGG - chr4_2:23104562-23104581 None:intergenic 50.0%
!! CCAAACCGGACTTGTTAGTC+TGG + chr4_2:23104559-23104578 Msa0594800:intron 50.0%
CAGAATAAACCAGCCTGGTC+TGG + chr4_2:23104618-23104637 Msa0594800:intron 50.0%
!! TTCACTTGTTGTGCCAGACC+AGG - chr4_2:23104634-23104653 None:intergenic 50.0%
!! GATGCGTTCGAACTTGGTGT+TGG + chr4_2:23104732-23104751 Msa0594800:intron 50.0%
ACCAAAATCCCGCACTTAGG+TGG - chr4_2:23104776-23104795 None:intergenic 50.0%
GCAACCAAAATCCCGCACTT+AGG - chr4_2:23104779-23104798 None:intergenic 50.0%
!! TCCAACCTGGCGTTTTTCGA+GGG - chr4_2:23105190-23105209 None:intergenic 50.0%
CACAGCAACCACTAAACGGA+AGG - chr4_2:23105630-23105649 None:intergenic 50.0%
ATCCAGGTCCGAGGTTGAAA+AGG + chr4_2:23105739-23105758 Msa0594800:intron 50.0%
GCTACCCGCACAAAATTTCC+TGG - chr4_2:23105912-23105931 None:intergenic 50.0%
AAGTCCCAATCCGGACTACC+GGG + chr4_2:23102545-23102564 Msa0594800:intron 55.0%
TGTCAGTGCCTGTCTCCCAA+TGG - chr4_2:23102576-23102595 None:intergenic 55.0%
TGATGCTTGCTTTCCGTCGG+AGG + chr4_2:23103010-23103029 Msa0594800:three_prime_UTR 55.0%
! CTCTAAAGGTGGAGATGCCG+AGG + chr4_2:23103043-23103062 Msa0594800:three_prime_UTR 55.0%
AGTGGTGCTTATGCGGTACC+TGG + chr4_2:23103104-23103123 Msa0594800:three_prime_UTR 55.0%
TTGGTGTGGATGCCGTTGAG+AGG + chr4_2:23103762-23103781 Msa0594800:three_prime_UTR 55.0%
! CAACAAGTTGGCAGGATGCC+TGG + chr4_2:23104004-23104023 Msa0594800:three_prime_UTR 55.0%
! ACAAGTTGGCAGGATGCCTG+GGG + chr4_2:23104006-23104025 Msa0594800:three_prime_UTR 55.0%
! GCCACCTAAGTGCGGGATTT+TGG + chr4_2:23104772-23104791 Msa0594800:intron 55.0%
!!! ACCTGGCGTTTTTCGAGGGA+GGG - chr4_2:23105186-23105205 None:intergenic 55.0%
!!! AACCTGGCGTTTTTCGAGGG+AGG - chr4_2:23105187-23105206 None:intergenic 55.0%
TCCCTCGAAAAACGCCAGGT+TGG + chr4_2:23105186-23105205 Msa0594800:intron 55.0%
! GTCCAACCTGGCGTTTTTCG+AGG - chr4_2:23105191-23105210 None:intergenic 55.0%
!! TGGTTTTGCTCTGCCAGTGG+AGG + chr4_2:23105281-23105300 Msa0594800:intron 55.0%
! GACCTTTTCAACCTCGGACC+TGG - chr4_2:23105744-23105763 None:intergenic 55.0%
GGTCCGAGGTTGAAAAGGTC+CGG + chr4_2:23105744-23105763 Msa0594800:intron 55.0%
GTCCGAGGTTGAAAAGGTCC+GGG + chr4_2:23105745-23105764 Msa0594800:three_prime_UTR 55.0%
! CTCCCGGACCTTTTCAACCT+CGG - chr4_2:23105750-23105769 None:intergenic 55.0%
TGAAAAGGTCCGGGAGAAGC+AGG + chr4_2:23105754-23105773 Msa0594800:three_prime_UTR 55.0%
CCAAAGTGACCTGCTTCTCC+CGG - chr4_2:23105766-23105785 None:intergenic 55.0%
AATGGAGTGGCCCGGTAGTC+CGG - chr4_2:23102558-23102577 None:intergenic 60.0%
GACTACCGGGCCACTCCATT+GGG + chr4_2:23102558-23102577 Msa0594800:intron 60.0%
TGTCTCCCAATGGAGTGGCC+CGG - chr4_2:23102566-23102585 None:intergenic 60.0%
GTGCCTGTCTCCCAATGGAG+TGG - chr4_2:23102571-23102590 None:intergenic 60.0%
GGTGGAGATGCCGAGGCTAA+TGG + chr4_2:23103050-23103069 Msa0594800:three_prime_UTR 60.0%
TTATCTCGGGCTGTGCCTCC+TGG + chr4_2:23103233-23103252 Msa0594800:three_prime_UTR 60.0%
GGATGCCGTTGAGAGGATGC+TGG + chr4_2:23103769-23103788 Msa0594800:three_prime_UTR 60.0%
TGCCGTTGAGAGGATGCTGG+AGG + chr4_2:23103772-23103791 Msa0594800:three_prime_UTR 60.0%
CAGCGTGTGTCTCCCTGTCT+TGG + chr4_2:23104514-23104533 Msa0594800:intron 60.0%
! CTTGTTGTGCCAGACCAGGC+TGG - chr4_2:23104630-23104649 None:intergenic 60.0%
TCCCTCCCTCGAAAAACGCC+AGG + chr4_2:23105182-23105201 Msa0594800:intron 60.0%
CCGGGAGAAGCAGGTCACTT+TGG + chr4_2:23105763-23105782 Msa0594800:three_prime_UTR 60.0%
GTGGCCCGGTAGTCCGGATT+GGG - chr4_2:23102552-23102571 None:intergenic 65.0%
AGTGGCCCGGTAGTCCGGAT+TGG - chr4_2:23102553-23102572 None:intergenic 65.0%
GGACTACCGGGCCACTCCAT+TGG + chr4_2:23102557-23102576 Msa0594800:intron 65.0%
GGGCCACTCCATTGGGAGAC+AGG + chr4_2:23102565-23102584 Msa0594800:intron 65.0%
GTGCGGGTAGCAGCTCTTCC+TGG + chr4_2:23105921-23105940 Msa0594800:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 23101695 23106002 23101695 ID=Msa0594800;Name=Msa0594800
chr4_2 mRNA 23101695 23106002 23101695 ID=Msa0594800-mRNA-1;Parent=Msa0594800;Name=Msa0594800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.6|1|0.5|0.6|5|1618|95
chr4_2 exon 23101695 23101760 23101695 ID=Msa0594800-mRNA-1:exon:6263;Parent=Msa0594800-mRNA-1
chr4_2 exon 23101860 23102033 23101860 ID=Msa0594800-mRNA-1:exon:6264;Parent=Msa0594800-mRNA-1
chr4_2 exon 23102907 23104228 23102907 ID=Msa0594800-mRNA-1:exon:6265;Parent=Msa0594800-mRNA-1
chr4_2 exon 23104335 23104420 23104335 ID=Msa0594800-mRNA-1:exon:6266;Parent=Msa0594800-mRNA-1
chr4_2 exon 23105745 23106002 23105745 ID=Msa0594800-mRNA-1:exon:6267;Parent=Msa0594800-mRNA-1
chr4_2 CDS 23101695 23101760 23101695 ID=Msa0594800-mRNA-1:cds;Parent=Msa0594800-mRNA-1
chr4_2 CDS 23101860 23102033 23101860 ID=Msa0594800-mRNA-1:cds;Parent=Msa0594800-mRNA-1
chr4_2 CDS 23102907 23102954 23102907 ID=Msa0594800-mRNA-1:cds;Parent=Msa0594800-mRNA-1
chr4_2 three_prime_UTR 23102955 23104228 23102955 ID=Msa0594800-mRNA-1:three_prime_utr;Parent=Msa0594800-mRNA-1
chr4_2 three_prime_UTR 23104335 23104420 23104335 ID=Msa0594800-mRNA-1:three_prime_utr;Parent=Msa0594800-mRNA-1
chr4_2 three_prime_UTR 23105745 23106002 23105745 ID=Msa0594800-mRNA-1:three_prime_utr;Parent=Msa0594800-mRNA-1
Gene Sequence

>Msa0594800

AAAAGGAACAAACAACACACACACAAATCCAATTCGTCAACGTTAATTCAACAAAACATAAATAAGGGAAATTGTGTGTTACTGAATTTGGATTGGATTGATGTGCAATGCATAGATCACGTAAAGCTCTTTTGGAAACAAGAGCTTCTCTTCTTCATAATCATCCTATTGATATTTCTTCTTCTTCTTCTGGAAAAAGTTTCAATTTTTATGAACTTTCTTTGGTTTTTGTTTTGTGGGATGGATCTGAAGAGCTTTCGGTTGGATTATCAAAATGGAATGAAGTGA
Protein sequence

>Msa0594800

KRNKQHTHKSNSSTLIQQNINKGNCVLLNLDWIDVQCIDHVKLFWKQELLFFIIILLIFLLLLLEKVSIFMNFLWFLFCGMDLKSFRLDYQNGMK*