AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647950 MtrunA17_Chr4g0028231 70.925 227 6 2 1 167 1 227 1.52e-101 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647950 AT5G22950.1 58.952 229 32 3 1 167 1 229 1.96e-72 218
Msa0647950 AT3G45000.2 75.758 132 30 1 38 167 8 139 7.04e-54 167
Msa0647950 AT3G45000.1 75.758 132 30 1 38 167 69 200 1.78e-53 168

Find 53 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATAACTGTTGCGGATT+TGG 0.126196 4_3:-54295928 None:intergenic
ATTATATATACAAAATAAAA+TGG 0.182644 4_3:-54295855 None:intergenic
AAGAAGAAATGGAAGAAATT+AGG 0.185877 4_3:+54300655 Msa0647950:CDS
ACTCTCTTATAATATATATC+AGG 0.254147 4_3:-54300825 None:intergenic
TGCATAGCAACAGCCATTTC+AGG 0.256684 4_3:-54300207 None:intergenic
GAATGAAAATTAATTATTCT+TGG 0.264027 4_3:-54295814 None:intergenic
CGCAACAGTTATTGCGAGAT+TGG 0.304376 4_3:+54295935 Msa0647950:CDS
AACTGTTGCGGATTTGGTTT+CGG 0.312520 4_3:-54295922 None:intergenic
CCCATTTGTAATATTAGTAT+TGG 0.323850 4_3:+54300865 Msa0647950:three_prime_UTR
TCCAATACTAATATTACAAA+TGG 0.345851 4_3:-54300866 None:intergenic
TTATATATACAAAATAAAAT+GGG 0.355594 4_3:-54295854 None:intergenic
TGACCTGACTTTAGCGAGTC+TGG 0.371271 4_3:-54300679 None:intergenic
AGAAGAAATGGAAGAAATTA+GGG 0.376649 4_3:+54300656 Msa0647950:CDS
CCTCACAGCTTCAGGAAGTT+GGG 0.383224 4_3:-54300474 None:intergenic
TCCTCACAGCTTCAGGAAGT+TGG 0.391690 4_3:-54300475 None:intergenic
TCATAAACGAGTTTCTAAAA+AGG 0.417167 4_3:+54300699 Msa0647950:exon
TGTAATATTAGTATTGGAAA+AGG 0.419711 4_3:+54300871 Msa0647950:three_prime_UTR
CCTCATGAAGGCTCCTGAAA+TGG 0.421101 4_3:+54300194 Msa0647950:CDS
CATATTAGCTATGTTGCCAT+TGG 0.449366 4_3:-54300904 None:intergenic
TCCTCTGCGGCACTTTGAGC+AGG 0.453503 4_3:-54300515 None:intergenic
TTCAGCAATTGCTCGTACTG+TGG 0.454062 4_3:+54300128 Msa0647950:intron
GGAATATAAATTATCGAAGA+AGG 0.474281 4_3:-54295761 None:intergenic
TGTTGATGATGAAGAAGAAA+TGG 0.478357 4_3:+54300644 Msa0647950:CDS
TTCTTCATCATCAACACCCT+CGG 0.485224 4_3:-54300637 None:intergenic
CCAATACTAATATTACAAAT+GGG 0.494913 4_3:-54300865 None:intergenic
AGGTGGGTGTGTTGTTCGTA+AGG 0.498532 4_3:+54295693 Msa0647950:five_prime_UTR
GTTTCAGGCAGGAGTAATTG+AGG 0.506660 4_3:+54300343 Msa0647950:intron
GGGCCAGACTCGCTAAAGTC+AGG 0.512607 4_3:+54300676 Msa0647950:CDS
AAAGTCTTAACTGAATTAGC+TGG 0.521196 4_3:+54300440 Msa0647950:CDS
AAAGAAGAAGATATTGAAGG+TGG 0.525044 4_3:+54295676 Msa0647950:five_prime_UTR
TCAGCAATTGCTCGTACTGT+GGG 0.530452 4_3:+54300129 Msa0647950:intron
AACATTGAACGACAAATTCG+CGG 0.539995 4_3:+54295985 Msa0647950:CDS
TGAAGCTGTGAGGAAACAAA+AGG 0.551851 4_3:+54300484 Msa0647950:CDS
CAATCTCGCAATAACTGTTG+CGG 0.559721 4_3:-54295934 None:intergenic
AAAAGGTGACTTATTACCAA+TGG 0.563748 4_3:+54300888 Msa0647950:three_prime_UTR
TGCTCAAAGTGCCGCAGAGG+AGG 0.582103 4_3:+54300517 Msa0647950:CDS
CTCTCTTATAATATATATCA+GGG 0.589567 4_3:-54300824 None:intergenic
AAGAAGAAGATATTGAAGGT+GGG 0.594381 4_3:+54295677 Msa0647950:five_prime_UTR
ACCTGCTCAAAGTGCCGCAG+AGG 0.595296 4_3:+54300514 Msa0647950:CDS
TATATATACAAAATAAAATG+GGG 0.596746 4_3:-54295853 None:intergenic
TGACTCAGCATTAGATTCTG+AGG 0.600712 4_3:+54300385 Msa0647950:CDS
TGAAGATTAGATCTTACTGA+AGG 0.602356 4_3:-54295782 None:intergenic
CAGGAAGATGCTATAGCCGA+GGG 0.609938 4_3:+54300621 Msa0647950:intron
GCTTGTCAATAACCTCATGA+AGG 0.612171 4_3:+54300182 Msa0647950:CDS
CCATTTCAGGAGCCTTCATG+AGG 0.615981 4_3:-54300194 None:intergenic
GCAGGAAGATGCTATAGCCG+AGG 0.620355 4_3:+54300620 Msa0647950:intron
ATTGACAAGCTTCATAACCT+CGG 0.641959 4_3:-54300169 None:intergenic
TATATCAGGGCACAATGCAG+AGG 0.655974 4_3:-54300811 None:intergenic
CACAGCTTCAGGAAGTTGGG+CGG 0.666714 4_3:-54300471 None:intergenic
CCCAACTTCCTGAAGCTGTG+AGG 0.668950 4_3:+54300474 Msa0647950:CDS
AACTGCATGTACCTCCTCTG+CGG 0.671034 4_3:-54300528 None:intergenic
ACATCTATCAAAGAGTGCCG+AGG 0.689000 4_3:+54300152 Msa0647950:CDS
GTTCAGCAAAGAAATGACCA+AGG 0.706921 4_3:+54300233 Msa0647950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTTTTATTT+TGG + chr4_3:54296763-54296782 Msa0647950:intron 0.0%
!!! TTTTTTATTTTTTTTATTTT+GGG + chr4_3:54296764-54296783 Msa0647950:intron 0.0%
!! TATATATACAAAATAAAATG+GGG - chr4_3:54295856-54295875 None:intergenic 10.0%
!!! ATATTTTTTAATCTTTACAA+TGG + chr4_3:54298959-54298978 Msa0647950:intron 10.0%
!! GAATGAAAATTAATTATTCT+TGG - chr4_3:54295817-54295836 None:intergenic 15.0%
!!! TTTTATTCTTAAATTACTAC+AGG - chr4_3:54296249-54296268 None:intergenic 15.0%
!!! TTTTTAATTAAGAGTATGTT+TGG - chr4_3:54297623-54297642 None:intergenic 15.0%
!! AAAAAAAACCTAAGTTAAAT+AGG + chr4_3:54297758-54297777 Msa0647950:intron 15.0%
!! TAAAAAGAAGAAGATATTGA+AGG + chr4_3:54295673-54295692 Msa0647950:five_prime_UTR 20.0%
!!! TAAGAATAAAATTAGCTTAG+TGG + chr4_3:54296258-54296277 Msa0647950:intron 20.0%
!! GTTTCTCTTAAAAAATTTCT+AGG - chr4_3:54296499-54296518 None:intergenic 20.0%
!! AAATTTAGTGATTAATGAGT+TGG + chr4_3:54296528-54296547 Msa0647950:intron 20.0%
!!! GTTTTATCATAAACCATATT+TGG - chr4_3:54296556-54296575 None:intergenic 20.0%
!! TATGGTTTATGATAAAACAT+AGG + chr4_3:54296558-54296577 Msa0647950:intron 20.0%
!! ATGGTTTATGATAAAACATA+GGG + chr4_3:54296559-54296578 Msa0647950:intron 20.0%
!!! AGTGTATATACAAGTTTTTA+TGG + chr4_3:54296951-54296970 Msa0647950:intron 20.0%
!! AAAATCTAATATCCTTATCA+TGG + chr4_3:54297240-54297259 Msa0647950:intron 20.0%
!!! CATAATTGTTTCATTTTAGA+TGG + chr4_3:54298884-54298903 Msa0647950:intron 20.0%
!!! TTTTTTAATCTTTACAATGG+CGG + chr4_3:54298962-54298981 Msa0647950:intron 20.0%
!!! TATGGTGTTTTACAATTATA+AGG + chr4_3:54299171-54299190 Msa0647950:intron 20.0%
!! AAGATAAAACTTCATGAAAT+TGG + chr4_3:54299534-54299553 Msa0647950:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG + chr4_3:54299888-54299907 Msa0647950:intron 20.0%
!! GTTAATTGCATGATAATTAT+TGG + chr4_3:54300309-54300328 Msa0647950:intron 20.0%
!! CTCTCTTATAATATATATCA+GGG - chr4_3:54300827-54300846 None:intergenic 20.0%
!! ACTCTCTTATAATATATATC+AGG - chr4_3:54300828-54300847 None:intergenic 20.0%
!! CCAATACTAATATTACAAAT+GGG - chr4_3:54300868-54300887 None:intergenic 20.0%
!! TCCAATACTAATATTACAAA+TGG - chr4_3:54300869-54300888 None:intergenic 20.0%
!!! TGTAATATTAGTATTGGAAA+AGG + chr4_3:54300871-54300890 Msa0647950:three_prime_UTR 20.0%
! GGAATATAAATTATCGAAGA+AGG - chr4_3:54295764-54295783 None:intergenic 25.0%
!!! ATAAAATGGGGATTTTTTGA+AGG - chr4_3:54295844-54295863 None:intergenic 25.0%
!!! GTTTTAAGAGAGATCAAAAA+TGG - chr4_3:54296017-54296036 None:intergenic 25.0%
! GAAGAATCAAGTATCAATTA+GGG - chr4_3:54296039-54296058 None:intergenic 25.0%
! AGAAGAATCAAGTATCAATT+AGG - chr4_3:54296040-54296059 None:intergenic 25.0%
! TTGATTCTTCTGATTATTTG+TGG + chr4_3:54296049-54296068 Msa0647950:intron 25.0%
! TGATTATTTGTGGTTATGAT+TGG + chr4_3:54296059-54296078 Msa0647950:intron 25.0%
!!! TTCATAACCAATGCTATTTT+TGG + chr4_3:54297127-54297146 Msa0647950:intron 25.0%
!!! GTCTTCTTTTTTAGATTTCA+AGG + chr4_3:54297178-54297197 Msa0647950:intron 25.0%
! ATTGAACAAATACCATGATA+AGG - chr4_3:54297255-54297274 None:intergenic 25.0%
! ATGGTATTTGTTCAATTTAC+AGG + chr4_3:54297259-54297278 Msa0647950:intron 25.0%
!! TAGTTTTTGCAAAATCACAA+TGG - chr4_3:54297473-54297492 None:intergenic 25.0%
!! CAAGTTTACCTATTTAACTT+AGG - chr4_3:54297769-54297788 None:intergenic 25.0%
!! TGATGATCAAATGTTTGTTA+TGG + chr4_3:54297808-54297827 Msa0647950:intron 25.0%
!!! GATGATCAAATGTTTGTTAT+GGG + chr4_3:54297809-54297828 Msa0647950:intron 25.0%
!!! ATGATCAAATGTTTGTTATG+GGG + chr4_3:54297810-54297829 Msa0647950:intron 25.0%
!! AACTGTCTACAGATTTTTAT+AGG + chr4_3:54297846-54297865 Msa0647950:intron 25.0%
!! CAGATTTTTATAGGTTTTTG+AGG + chr4_3:54297855-54297874 Msa0647950:intron 25.0%
!! CGGATTTTATCTATATTTTG+AGG + chr4_3:54298058-54298077 Msa0647950:intron 25.0%
!!! TTATCTATATTTTGAGGTTG+AGG + chr4_3:54298064-54298083 Msa0647950:intron 25.0%
!! AAGTCTTAATTTTATTCACG+AGG + chr4_3:54298579-54298598 Msa0647950:intron 25.0%
!!! TTTCTTTTGAGAAGATAAAG+CGG + chr4_3:54298918-54298937 Msa0647950:intron 25.0%
!! TGATTTTCATACAAAGGATT+AGG - chr4_3:54299500-54299519 None:intergenic 25.0%
!! TAAGTGTGATTTTCATACAA+AGG - chr4_3:54299506-54299525 None:intergenic 25.0%
!! TGATTTTCATACAAAGGATT+AGG - chr4_3:54299500-54299519 None:intergenic 25.0%
!! TTAGTGTGATTTTCATACAA+AGG - chr4_3:54299684-54299703 None:intergenic 25.0%
!!! TGCATTTTTAGGTTTTACTT+TGG + chr4_3:54299749-54299768 Msa0647950:intron 25.0%
!!! GCATTTTTAGGTTTTACTTT+GGG + chr4_3:54299750-54299769 Msa0647950:intron 25.0%
!!! CATTTTTAGGTTTTACTTTG+GGG + chr4_3:54299751-54299770 Msa0647950:intron 25.0%
! CATAATATAGTCATTGTACA+AGG - chr4_3:54299914-54299933 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG + chr4_3:54300082-54300101 Msa0647950:intron 25.0%
!! TCATTGGAAATTCCTAATTT+TGG + chr4_3:54300098-54300117 Msa0647950:intron 25.0%
! AAGAAGAAATGGAAGAAATT+AGG + chr4_3:54300655-54300674 Msa0647950:CDS 25.0%
! AGAAGAAATGGAAGAAATTA+GGG + chr4_3:54300656-54300675 Msa0647950:CDS 25.0%
!! TCATAAACGAGTTTCTAAAA+AGG + chr4_3:54300699-54300718 Msa0647950:exon 25.0%
! TCATAAAAAGTTCTACTTTC+TGG + chr4_3:54300775-54300794 Msa0647950:three_prime_UTR 25.0%
! CCCATTTGTAATATTAGTAT+TGG + chr4_3:54300865-54300884 Msa0647950:three_prime_UTR 25.0%
AAAGAAGAAGATATTGAAGG+TGG + chr4_3:54295676-54295695 Msa0647950:five_prime_UTR 30.0%
AAGAAGAAGATATTGAAGGT+GGG + chr4_3:54295677-54295696 Msa0647950:five_prime_UTR 30.0%
TGAAGATTAGATCTTACTGA+AGG - chr4_3:54295785-54295804 None:intergenic 30.0%
!!! ATTTTGGGATCAGTGAAAAA+TGG + chr4_3:54295876-54295895 Msa0647950:exon 30.0%
TGATTTAGATATTCAGAGAG+AGG + chr4_3:54296100-54296119 Msa0647950:intron 30.0%
AGTAAGGAGTTTAGATTAGA+TGG + chr4_3:54296441-54296460 Msa0647950:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr4_3:54296540-54296559 Msa0647950:intron 30.0%
GAAAGACATTACATTGAATG+AGG - chr4_3:54296903-54296922 None:intergenic 30.0%
GTACAAACCAAAAATAGCAT+TGG - chr4_3:54297137-54297156 None:intergenic 30.0%
!!! ATGCTATTTTTGGTTTGTAC+TGG + chr4_3:54297137-54297156 Msa0647950:intron 30.0%
AAAAAAGAAGACTGCCTAAA+AGG - chr4_3:54297170-54297189 None:intergenic 30.0%
AAGGTTCGATAGAATAAAGT+AGG + chr4_3:54297197-54297216 Msa0647950:intron 30.0%
TGCATGTTTGATATCACAAT+GGG - chr4_3:54297545-54297564 None:intergenic 30.0%
TACCAGTTGTATGATAATTG+TGG + chr4_3:54297669-54297688 Msa0647950:intron 30.0%
!!! TTTATAGGTTTTTGAGGTTG+AGG + chr4_3:54297861-54297880 Msa0647950:intron 30.0%
!!! TTATAGGTTTTTGAGGTTGA+GGG + chr4_3:54297862-54297881 Msa0647950:intron 30.0%
! AGCTAATTTTTATTAGCTCC+AGG + chr4_3:54298766-54298785 Msa0647950:intron 30.0%
AGCCAAATAACAAACTTAAC+AGG + chr4_3:54299296-54299315 Msa0647950:intron 30.0%
!! CTCCTGTTAAGTTTGTTATT+TGG - chr4_3:54299301-54299320 None:intergenic 30.0%
CAAATAACAAACTTAACAGG+AGG + chr4_3:54299299-54299318 Msa0647950:intron 30.0%
AATGTATGTAAGAGTTAGAG+AGG + chr4_3:54299350-54299369 Msa0647950:intron 30.0%
CTGATATCAAGAAAGAGAAA+AGG - chr4_3:54299462-54299481 None:intergenic 30.0%
! TTCATGAAATTGGAAGTATG+TGG + chr4_3:54299544-54299563 Msa0647950:intron 30.0%
CAAATTAAAACAGGAAGAGA+GGG + chr4_3:54299813-54299832 Msa0647950:intron 30.0%
AAATTAAAACAGGAAGAGAG+GGG + chr4_3:54299814-54299833 Msa0647950:intron 30.0%
TAGTCATCATGAGATATTTG+AGG + chr4_3:54300049-54300068 Msa0647950:intron 30.0%
AATTAACTTCTATGACTACG+GGG - chr4_3:54300296-54300315 None:intergenic 30.0%
CAATTAACTTCTATGACTAC+GGG - chr4_3:54300297-54300316 None:intergenic 30.0%
GCAATTAACTTCTATGACTA+CGG - chr4_3:54300298-54300317 None:intergenic 30.0%
!! TTGGTAATGTATTCTGTTTC+AGG + chr4_3:54300328-54300347 Msa0647950:intron 30.0%
AAAGTCTTAACTGAATTAGC+TGG + chr4_3:54300440-54300459 Msa0647950:CDS 30.0%
AGTTCAATTTCCTGTTAACA+AGG + chr4_3:54300547-54300566 Msa0647950:intron 30.0%
TGGAATGCATTATTATTTGC+AGG + chr4_3:54300602-54300621 Msa0647950:intron 30.0%
!! TGTTGATGATGAAGAAGAAA+TGG + chr4_3:54300644-54300663 Msa0647950:CDS 30.0%
AAAAGGTGACTTATTACCAA+TGG + chr4_3:54300888-54300907 Msa0647950:three_prime_UTR 30.0%
!!! ATGGGGATTTTTTGAAGGAT+TGG - chr4_3:54295839-54295858 None:intergenic 35.0%
AACATTGAACGACAAATTCG+CGG + chr4_3:54295985-54296004 Msa0647950:CDS 35.0%
CTATTAAAGAAGCTGCTAAG+AGG + chr4_3:54296141-54296160 Msa0647950:intron 35.0%
ACCTATAGTAGAAAAGATCG+TGG + chr4_3:54296366-54296385 Msa0647950:intron 35.0%
! TCCACGATCTTTTCTACTAT+AGG - chr4_3:54296370-54296389 None:intergenic 35.0%
! GACGTGTAGATTTTGTAGTA+AGG + chr4_3:54296425-54296444 Msa0647950:intron 35.0%
AAGGAGTTTAGATTAGATGG+AGG + chr4_3:54296444-54296463 Msa0647950:intron 35.0%
CTTATCTCATTAAGTGGGAT+AGG - chr4_3:54296603-54296622 None:intergenic 35.0%
CTATCCCACTTAATGAGATA+AGG + chr4_3:54296601-54296620 Msa0647950:intron 35.0%
! CAAGCCTTATCTCATTAAGT+GGG - chr4_3:54296608-54296627 None:intergenic 35.0%
GTTTCAAAAGGCTAGAAGTT+TGG - chr4_3:54296857-54296876 None:intergenic 35.0%
!!! TTCTAGCCTTTTGAAACAAC+AGG + chr4_3:54296860-54296879 Msa0647950:intron 35.0%
ATGTCTTTCTGCTGAATGTA+AGG + chr4_3:54296914-54296933 Msa0647950:intron 35.0%
! TACCCAATTGAAGGCATATT+CGG + chr4_3:54297008-54297027 Msa0647950:intron 35.0%
AACTCAATATCAATGCACCT+TGG + chr4_3:54297350-54297369 Msa0647950:intron 35.0%
ACACACTAAGAGGACAATTA+AGG - chr4_3:54297412-54297431 None:intergenic 35.0%
TTAGTGTGTGTTGGATATCA+TGG + chr4_3:54297423-54297442 Msa0647950:intron 35.0%
GTGCATGTTTGATATCACAA+TGG - chr4_3:54297546-54297565 None:intergenic 35.0%
! GCACAACTTTTGACAAATCA+CGG + chr4_3:54297562-54297581 Msa0647950:intron 35.0%
AGCCACAATTATCATACAAC+TGG - chr4_3:54297674-54297693 None:intergenic 35.0%
TCTAAACATGTGCTATACCT+TGG + chr4_3:54297962-54297981 Msa0647950:intron 35.0%
CTAAACATGTGCTATACCTT+GGG + chr4_3:54297963-54297982 Msa0647950:intron 35.0%
CTAAAAGAGACCAAACAAGA+GGG + chr4_3:54298018-54298037 Msa0647950:intron 35.0%
TAAAAGAGACCAAACAAGAG+GGG + chr4_3:54298019-54298038 Msa0647950:intron 35.0%
GATCTTAACATGCTATAGCT+AGG + chr4_3:54298159-54298178 Msa0647950:intron 35.0%
TGTGCACTTAACATGATCAA+TGG + chr4_3:54298356-54298375 Msa0647950:intron 35.0%
ATGACTAAGGAATGAATGAC+TGG - chr4_3:54298466-54298485 None:intergenic 35.0%
AGTCATTCATTCCTTAGTCA+TGG + chr4_3:54298465-54298484 Msa0647950:intron 35.0%
GTCATTCATTCCTTAGTCAT+GGG + chr4_3:54298466-54298485 Msa0647950:intron 35.0%
AGAAAAAGAGAAAGCGAGTT+AGG + chr4_3:54298527-54298546 Msa0647950:intron 35.0%
CGAGTTAGGAAAGATTCTAA+AGG + chr4_3:54298541-54298560 Msa0647950:intron 35.0%
!! ATTTTATTCACGAGGCATTC+TGG + chr4_3:54298587-54298606 Msa0647950:intron 35.0%
!! TTTTATTCACGAGGCATTCT+GGG + chr4_3:54298588-54298607 Msa0647950:intron 35.0%
TCAGGCGTATATATTAGTGT+TGG + chr4_3:54298687-54298706 Msa0647950:intron 35.0%
!! TTGGTGCTTATGCATGTTTT+TGG + chr4_3:54298706-54298725 Msa0647950:intron 35.0%
! TGGTGCTTATGCATGTTTTT+GGG + chr4_3:54298707-54298726 Msa0647950:intron 35.0%
! AATAGCTTGTAAGAAGCTCA+TGG + chr4_3:54298789-54298808 Msa0647950:intron 35.0%
!!! TTGCCCTTTTTTTACAATGG+CGG + chr4_3:54299070-54299089 Msa0647950:intron 35.0%
TAGCCGCCATTGTAAAAAAA+GGG - chr4_3:54299076-54299095 None:intergenic 35.0%
ATAGCCGCCATTGTAAAAAA+AGG - chr4_3:54299077-54299096 None:intergenic 35.0%
GTCATTCTATGGTGTAATCT+TGG - chr4_3:54299134-54299153 None:intergenic 35.0%
ACCATAGAATGACATTGACA+AGG + chr4_3:54299141-54299160 Msa0647950:intron 35.0%
CCATAGAATGACATTGACAA+GGG + chr4_3:54299142-54299161 Msa0647950:intron 35.0%
CATAACTGAACTTGACTAGT+AGG + chr4_3:54299206-54299225 Msa0647950:intron 35.0%
GTAGGTAAGAAACCTTTGAT+AGG + chr4_3:54299224-54299243 Msa0647950:intron 35.0%
ACTTATTCTCTTCTTGACTG+TGG - chr4_3:54299253-54299272 None:intergenic 35.0%
AGAAGAGAATAAGTCAGCAA+AGG + chr4_3:54299259-54299278 Msa0647950:intron 35.0%
GAAGAGAATAAGTCAGCAAA+GGG + chr4_3:54299260-54299279 Msa0647950:intron 35.0%
AAGAGAATAAGTCAGCAAAG+GGG + chr4_3:54299261-54299280 Msa0647950:intron 35.0%
TTAACAGGAGGTAATAGTTG+TGG + chr4_3:54299311-54299330 Msa0647950:intron 35.0%
TAACAGGAGGTAATAGTTGT+GGG + chr4_3:54299312-54299331 Msa0647950:intron 35.0%
GTAAGAGTTAGAGAGGAAAT+TGG + chr4_3:54299357-54299376 Msa0647950:intron 35.0%
GATCTCGAAATAACTAGCAA+AGG + chr4_3:54299406-54299425 Msa0647950:intron 35.0%
TTTAATTGACACCTCCTTTG+TGG + chr4_3:54299726-54299745 Msa0647950:intron 35.0%
AACCTAAAAATGCACCACAA+AGG - chr4_3:54299743-54299762 None:intergenic 35.0%
! GGGGATAAAATTTTACTGAG+CGG + chr4_3:54299770-54299789 Msa0647950:intron 35.0%
!!! CCTCTCTTCCTGTTTTAATT+TGG - chr4_3:54299815-54299834 None:intergenic 35.0%
CCAAATTAAAACAGGAAGAG+AGG + chr4_3:54299812-54299831 Msa0647950:intron 35.0%
CTCATGATGACTAATTGCAA+AGG - chr4_3:54300042-54300061 None:intergenic 35.0%
ATTGACAAGCTTCATAACCT+CGG - chr4_3:54300172-54300191 None:intergenic 35.0%
TAATGTATTCTGTTTCAGGC+AGG + chr4_3:54300332-54300351 Msa0647950:intron 35.0%
CTCTCAAGTCACACTAATTA+TGG + chr4_3:54300582-54300601 Msa0647950:intron 35.0%
CATATTAGCTATGTTGCCAT+TGG - chr4_3:54300907-54300926 None:intergenic 35.0%
GGATCAGTGAAAAATGGAGA+AGG + chr4_3:54295882-54295901 Msa0647950:exon 40.0%
! AACTGTTGCGGATTTGGTTT+CGG - chr4_3:54295925-54295944 None:intergenic 40.0%
CAATCTCGCAATAACTGTTG+CGG - chr4_3:54295937-54295956 None:intergenic 40.0%
!! GAATGACATTGGTTCTGCAA+AGG + chr4_3:54296163-54296182 Msa0647950:intron 40.0%
CGTTGGATGTGTTGTAATAC+TGG + chr4_3:54296295-54296314 Msa0647950:intron 40.0%
AGATCGTGGAAGTTATGCTT+AGG + chr4_3:54296380-54296399 Msa0647950:intron 40.0%
! CCAAGCCTTATCTCATTAAG+TGG - chr4_3:54296609-54296628 None:intergenic 40.0%
CCACTTAATGAGATAAGGCT+TGG + chr4_3:54296606-54296625 Msa0647950:intron 40.0%
! AATCACATGTGTCGATGTGT+CGG + chr4_3:54296639-54296658 Msa0647950:intron 40.0%
!! CCAACACCTGTTGTTTCAAA+AGG - chr4_3:54296869-54296888 None:intergenic 40.0%
!!! CCTTTTGAAACAACAGGTGT+TGG + chr4_3:54296866-54296885 Msa0647950:intron 40.0%
TCTTTCTGCTGAATGTAAGG+TGG + chr4_3:54296917-54296936 Msa0647950:intron 40.0%
TGCTGAATGTAAGGTGGAAT+AGG + chr4_3:54296923-54296942 Msa0647950:intron 40.0%
GTGATCGGTCTTAACATGTA+TGG - chr4_3:54296983-54297002 None:intergenic 40.0%
GAATATGCCTTCAATTGGGT+AGG - chr4_3:54297009-54297028 None:intergenic 40.0%
CACCGAATATGCCTTCAATT+GGG - chr4_3:54297013-54297032 None:intergenic 40.0%
ACACCGAATATGCCTTCAAT+TGG - chr4_3:54297014-54297033 None:intergenic 40.0%
!! GTACTGGTGTATCACCTTTT+AGG + chr4_3:54297153-54297172 Msa0647950:intron 40.0%
CTACAGAACTTGTGAGATCT+AGG + chr4_3:54297288-54297307 Msa0647950:intron 40.0%
GAACCGTCTGCATGAAAATA+AGG + chr4_3:54297319-54297338 Msa0647950:intron 40.0%
!!! GTGCCTTATTTTCATGCAGA+CGG - chr4_3:54297325-54297344 None:intergenic 40.0%
!!! GAGAAAGTGTTGGTAGGTTT+TGG + chr4_3:54297372-54297391 Msa0647950:intron 40.0%
ATTGTCCTCTTAGTGTGTGT+TGG + chr4_3:54297414-54297433 Msa0647950:intron 40.0%
GATATCCAACACACACTAAG+AGG - chr4_3:54297422-54297441 None:intergenic 40.0%
AACTACGCTTTGTGCATGTT+TGG + chr4_3:54297488-54297507 Msa0647950:intron 40.0%
!! CAATGGGTTTGCTAGAATCA+CGG - chr4_3:54297529-54297548 None:intergenic 40.0%
! CAACTTTTGACAAATCACGG+TGG + chr4_3:54297565-54297584 Msa0647950:intron 40.0%
AGTATGTTTGGTATCGCAGT+GGG - chr4_3:54297611-54297630 None:intergenic 40.0%
ATGAAGCACAAGAGCTAACT+TGG - chr4_3:54297650-54297669 None:intergenic 40.0%
ATTCCACTTAGTCAACTGGA+GGG - chr4_3:54297726-54297745 None:intergenic 40.0%
TATTCCACTTAGTCAACTGG+AGG - chr4_3:54297727-54297746 None:intergenic 40.0%
TCCAGTTGACTAAGTGGAAT+AGG + chr4_3:54297726-54297745 Msa0647950:intron 40.0%
ACCTATTCCACTTAGTCAAC+TGG - chr4_3:54297730-54297749 None:intergenic 40.0%
TATACCTTGGGACAGGAAAA+GGG + chr4_3:54297975-54297994 Msa0647950:intron 40.0%
GCTAAAAGAGACCAAACAAG+AGG + chr4_3:54298017-54298036 Msa0647950:intron 40.0%
AACTGACTGTGATGTCTGTA+TGG + chr4_3:54298091-54298110 Msa0647950:intron 40.0%
!! GTGCACACAATCTTTAGGAT+AGG + chr4_3:54298137-54298156 Msa0647950:intron 40.0%
TAACATGCTATAGCTAGGAC+AGG + chr4_3:54298164-54298183 Msa0647950:intron 40.0%
AGAAGCAAAAGAGGAACAAC+AGG + chr4_3:54298206-54298225 Msa0647950:intron 40.0%
ACTTAGCTAGGAACAGGAAA+AGG + chr4_3:54298285-54298304 Msa0647950:intron 40.0%
CTTAGCTAGGAACAGGAAAA+GGG + chr4_3:54298286-54298305 Msa0647950:intron 40.0%
GAAAAGGGTCTTAGCAAAAG+AGG + chr4_3:54298301-54298320 Msa0647950:intron 40.0%
CAAAAAGAGACCAACCTAGA+GGG + chr4_3:54298329-54298348 Msa0647950:intron 40.0%
AAAAAGAGACCAACCTAGAG+GGG + chr4_3:54298330-54298349 Msa0647950:intron 40.0%
! TTCTAAAGACTGAGCTTCTG+AGG + chr4_3:54298500-54298519 Msa0647950:intron 40.0%
! TAGCTTGTACAGGTCCATTT+GGG + chr4_3:54298644-54298663 Msa0647950:intron 40.0%
!! GGTGCTTATGCATGTTTTTG+GGG + chr4_3:54298708-54298727 Msa0647950:intron 40.0%
!!! GTGCTTATGCATGTTTTTGG+GGG + chr4_3:54298709-54298728 Msa0647950:intron 40.0%
! GGGGAGCTTATTGAAAGTAT+TGG + chr4_3:54298728-54298747 Msa0647950:intron 40.0%
AGCTTCTTACAAGCTATTCC+TGG - chr4_3:54298787-54298806 None:intergenic 40.0%
GCAGACTAAACAATTCCTAG+AGG - chr4_3:54298861-54298880 None:intergenic 40.0%
CTAGGAATTGTTTAGTCTGC+AGG + chr4_3:54298861-54298880 Msa0647950:intron 40.0%
TTTACAATGGCGGCTATACA+GGG + chr4_3:54298972-54298991 Msa0647950:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_3:54299003-54299022 Msa0647950:intron 40.0%
!!! GGGTTGCCCTTTTTTTACAA+TGG + chr4_3:54299067-54299086 Msa0647950:intron 40.0%
! TTTTACAATGGCGGCTATAG+TGG + chr4_3:54299079-54299098 Msa0647950:intron 40.0%
CCCTTGTCAATGTCATTCTA+TGG - chr4_3:54299145-54299164 None:intergenic 40.0%
! GAGAGGAAATTGGAAGTATG+TGG + chr4_3:54299367-54299386 Msa0647950:intron 40.0%
TATGTGGTCATGTAGAGACT+AGG + chr4_3:54299383-54299402 Msa0647950:intron 40.0%
ATGTGGTCATGTAGAGACTA+GGG + chr4_3:54299384-54299403 Msa0647950:intron 40.0%
GGATCTCGAAATAACTAGCA+AGG + chr4_3:54299405-54299424 Msa0647950:intron 40.0%
TATGTGGTCATGTAGAGACT+AGG + chr4_3:54299383-54299402 Msa0647950:intron 40.0%
ATGTGGTCATGTAGAGACTA+GGG + chr4_3:54299384-54299403 Msa0647950:intron 40.0%
CTAAAAATGCACCACAAAGG+AGG - chr4_3:54299740-54299759 None:intergenic 40.0%
! CTCCTTTGTGGTGCATTTTT+AGG + chr4_3:54299738-54299757 Msa0647950:intron 40.0%
AGTGAGGGCCAAATTAAAAC+AGG + chr4_3:54299804-54299823 Msa0647950:intron 40.0%
TGGCTAAGTCATGCATTGTT+TGG + chr4_3:54299857-54299876 Msa0647950:intron 40.0%
CTGAAAAGGCAGCCAAAATT+AGG - chr4_3:54300113-54300132 None:intergenic 40.0%
AGTACGAGCAATTGCTGAAA+AGG - chr4_3:54300127-54300146 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG + chr4_3:54300182-54300201 Msa0647950:CDS 40.0%
GTTCAGCAAAGAAATGACCA+AGG + chr4_3:54300233-54300252 Msa0647950:CDS 40.0%
! TGAAGTATGAAGGCATACCT+TGG - chr4_3:54300253-54300272 None:intergenic 40.0%
GCAGGAGAAATGAAGTATGA+AGG - chr4_3:54300263-54300282 None:intergenic 40.0%
TGACTCAGCATTAGATTCTG+AGG + chr4_3:54300385-54300404 Msa0647950:CDS 40.0%
!! TTTTGTTTCCTCACAGCTTC+AGG - chr4_3:54300485-54300504 None:intergenic 40.0%
TGAAGCTGTGAGGAAACAAA+AGG + chr4_3:54300484-54300503 Msa0647950:CDS 40.0%
!! GCAAAAAGAGCCTTGTTAAC+AGG - chr4_3:54300560-54300579 None:intergenic 40.0%
TTCTTCATCATCAACACCCT+CGG - chr4_3:54300640-54300659 None:intergenic 40.0%
CGCAATAACTGTTGCGGATT+TGG - chr4_3:54295931-54295950 None:intergenic 45.0%
CGCAACAGTTATTGCGAGAT+TGG + chr4_3:54295935-54295954 Msa0647950:CDS 45.0%
GCTGCTAAGAGGAATGACAT+TGG + chr4_3:54296152-54296171 Msa0647950:intron 45.0%
TCTGTCACTGACACCAGATA+CGG + chr4_3:54296211-54296230 Msa0647950:intron 45.0%
TGGAGATGAGAAAGTTGCGT+TGG + chr4_3:54296278-54296297 Msa0647950:intron 45.0%
CGACATTAGAGAGAGAGATC+AGG + chr4_3:54296339-54296358 Msa0647950:intron 45.0%
TCGTGGAAGTTATGCTTAGG+TGG + chr4_3:54296383-54296402 Msa0647950:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr4_3:54296463-54296482 Msa0647950:intron 45.0%
! GCACTGACAGTTCTAATCGA+AGG - chr4_3:54296714-54296733 None:intergenic 45.0%
CAATTGGGTAGGACTGTGAT+CGG - chr4_3:54296998-54297017 None:intergenic 45.0%
TCACAGTCCTACCCAATTGA+AGG + chr4_3:54296999-54297018 Msa0647950:intron 45.0%
!! CATATTCGGTGTCAGACATG+TGG + chr4_3:54297022-54297041 Msa0647950:intron 45.0%
GCTCTGACACACACAAAAAC+AGG - chr4_3:54297107-54297126 None:intergenic 45.0%
! ATGCACCTTGGAGAAAGTGT+TGG + chr4_3:54297362-54297381 Msa0647950:intron 45.0%
!! ACCTTGGAGAAAGTGTTGGT+AGG + chr4_3:54297366-54297385 Msa0647950:intron 45.0%
ACCTACCAACACTTTCTCCA+AGG - chr4_3:54297370-54297389 None:intergenic 45.0%
GTGTGTGTTGGATATCATGG+TGG + chr4_3:54297426-54297445 Msa0647950:intron 45.0%
!! TGGTGGATTTGCCAGAATCA+CGG + chr4_3:54297443-54297462 Msa0647950:intron 45.0%
ACAATGGCAATCCGTGATTC+TGG - chr4_3:54297457-54297476 None:intergenic 45.0%
GTGCATGTTTGGTATCACAG+TGG + chr4_3:54297499-54297518 Msa0647950:intron 45.0%
GAGTATGTTTGGTATCGCAG+TGG - chr4_3:54297612-54297631 None:intergenic 45.0%
AGAGACTGTGTGCAAAGAGT+GGG - chr4_3:54297932-54297951 None:intergenic 45.0%
TAGAGACTGTGTGCAAAGAG+TGG - chr4_3:54297933-54297952 None:intergenic 45.0%
ACTCTTTGCACACAGTCTCT+AGG + chr4_3:54297932-54297951 Msa0647950:intron 45.0%
!! TTGCACACAGTCTCTAGGAT+AGG + chr4_3:54297937-54297956 Msa0647950:intron 45.0%
CTATACCTTGGGACAGGAAA+AGG + chr4_3:54297974-54297993 Msa0647950:intron 45.0%
GAAAAGGGTCTTAGCGAAAG+AGG + chr4_3:54297990-54298009 Msa0647950:intron 45.0%
CTAAAGATTGTGTGCACGAG+TGG - chr4_3:54298134-54298153 None:intergenic 45.0%
CACTCGTGCACACAATCTTT+AGG + chr4_3:54298132-54298151 Msa0647950:intron 45.0%
GCTATAGCTAGGACAGGAAA+AGG + chr4_3:54298170-54298189 Msa0647950:intron 45.0%
! ACAGGAAAAGGTGCAGCAAA+AGG + chr4_3:54298182-54298201 Msa0647950:intron 45.0%
! CAGGAAAAGGTGCAGCAAAA+GGG + chr4_3:54298183-54298202 Msa0647950:intron 45.0%
GCAAAAGGGAGAAGCAAAAG+AGG + chr4_3:54298197-54298216 Msa0647950:intron 45.0%
AAGAGGAACAACAGGCAGAT+AGG + chr4_3:54298214-54298233 Msa0647950:intron 45.0%
GCTTAGCAGGTAGAGCAAAA+AGG + chr4_3:54298241-54298260 Msa0647950:intron 45.0%
AGCAAAAAGGACCAACCTAG+AGG + chr4_3:54298254-54298273 Msa0647950:intron 45.0%
GCAAAAAGAGACCAACCTAG+AGG + chr4_3:54298328-54298347 Msa0647950:intron 45.0%
ACCAATCTCCAGCTCGTATA+TGG + chr4_3:54298411-54298430 Msa0647950:intron 45.0%
CCAATCTCCAGCTCGTATAT+GGG + chr4_3:54298412-54298431 Msa0647950:intron 45.0%
CAATCTCCAGCTCGTATATG+GGG + chr4_3:54298413-54298432 Msa0647950:intron 45.0%
! GAGGCATTCTGGGTTCATTT+GGG + chr4_3:54298598-54298617 Msa0647950:intron 45.0%
CATTCTGGGTTCATTTGGGT+TGG + chr4_3:54298602-54298621 Msa0647950:intron 45.0%
! AGCTACTCATGGACTACTCA+TGG - chr4_3:54298629-54298648 None:intergenic 45.0%
! AGTCCATGAGTAGCTTGTAC+AGG + chr4_3:54298634-54298653 Msa0647950:intron 45.0%
! GTAGCTTGTACAGGTCCATT+TGG + chr4_3:54298643-54298662 Msa0647950:intron 45.0%
TTGTACAGGTCCATTTGGGT+TGG + chr4_3:54298648-54298667 Msa0647950:intron 45.0%
TACTCATGGACCAACCCAAA+TGG - chr4_3:54298615-54298634 None:intergenic 45.0%
GGTCCATGAGTAGCTTATTC+AGG + chr4_3:54298669-54298688 Msa0647950:intron 45.0%
ACGCCTGAATAAGCTACTCA+TGG - chr4_3:54298675-54298694 None:intergenic 45.0%
CGTGCTCATCATGTGTAGTT+AGG - chr4_3:54298837-54298856 None:intergenic 45.0%
CTTTACAATGGCGGCTATAC+AGG + chr4_3:54298971-54298990 Msa0647950:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_3:54298999-54299018 Msa0647950:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_3:54299002-54299021 Msa0647950:intron 45.0%
! ATGGCGGCTATAGTGGTTTT+TGG + chr4_3:54299086-54299105 Msa0647950:intron 45.0%
! TGGCGGCTATAGTGGTTTTT+GGG + chr4_3:54299087-54299106 Msa0647950:intron 45.0%
!!! GCTATAGTGGTTTTTGGGTC+TGG + chr4_3:54299092-54299111 Msa0647950:intron 45.0%
CATTGACAAGGGTTGCTGTA+TGG + chr4_3:54299153-54299172 Msa0647950:intron 45.0%
TGACTGTGGAAGCCTATCAA+AGG - chr4_3:54299239-54299258 None:intergenic 45.0%
AATAAGTCAGCAAAGGGGCA+GGG + chr4_3:54299266-54299285 Msa0647950:intron 45.0%
GTAATAGTTGTGGGTAGCAG+AGG + chr4_3:54299321-54299340 Msa0647950:intron 45.0%
AGCGGTTTACAAGTCAAGTG+AGG + chr4_3:54299788-54299807 Msa0647950:intron 45.0%
GCGGTTTACAAGTCAAGTGA+GGG + chr4_3:54299789-54299808 Msa0647950:intron 45.0%
AAAACAGGAAGAGAGGGGAA+AGG + chr4_3:54299819-54299838 Msa0647950:intron 45.0%
AAACAGGAAGAGAGGGGAAA+GGG + chr4_3:54299820-54299839 Msa0647950:intron 45.0%
TTCAGCAATTGCTCGTACTG+TGG + chr4_3:54300128-54300147 Msa0647950:intron 45.0%
TCAGCAATTGCTCGTACTGT+GGG + chr4_3:54300129-54300148 Msa0647950:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG + chr4_3:54300152-54300171 Msa0647950:CDS 45.0%
TGCATAGCAACAGCCATTTC+AGG - chr4_3:54300210-54300229 None:intergenic 45.0%
GTTTCAGGCAGGAGTAATTG+AGG + chr4_3:54300343-54300362 Msa0647950:intron 45.0%
TATATCAGGGCACAATGCAG+AGG - chr4_3:54300814-54300833 None:intergenic 45.0%
!! TTATATATACAAAATAAAAT+GGG - chr4_3:54295857-54295876 None:intergenic 5.0%
!! ATTATATATACAAAATAAAA+TGG - chr4_3:54295858-54295877 None:intergenic 5.0%
!!! TTATTTTGTATATATAATTT+TGG + chr4_3:54295860-54295879 Msa0647950:five_prime_UTR 5.0%
!!! TATTTTGTATATATAATTTT+GGG + chr4_3:54295861-54295880 Msa0647950:five_prime_UTR 5.0%
! AGGTGGGTGTGTTGTTCGTA+AGG + chr4_3:54295693-54295712 Msa0647950:five_prime_UTR 50.0%
! GACAGTTCTAATCGAAGGCG+TGG - chr4_3:54296709-54296728 None:intergenic 50.0%
CAACACTAACACGTCAACGC+TGG - chr4_3:54297081-54297100 None:intergenic 50.0%
! ACGGTGGCTCACTGTGATTT+TGG + chr4_3:54297581-54297600 Msa0647950:intron 50.0%
ACTCCCTCCAGTTGACTAAG+TGG + chr4_3:54297720-54297739 Msa0647950:intron 50.0%
CATGTGCTATACCTTGGGAC+AGG + chr4_3:54297968-54297987 Msa0647950:intron 50.0%
! AAGACCCTTTTCCTGTCCCA+AGG - chr4_3:54297982-54298001 None:intergenic 50.0%
AGGGTCTTAGCGAAAGAGGT+AGG + chr4_3:54297994-54298013 Msa0647950:intron 50.0%
GGGTCTTAGCGAAAGAGGTA+GGG + chr4_3:54297995-54298014 Msa0647950:intron 50.0%
GCAGATAGGAAGAGCTTAGC+AGG + chr4_3:54298228-54298247 Msa0647950:intron 50.0%
GTGTGCACTTAGCTAGGAAC+AGG + chr4_3:54298279-54298298 Msa0647950:intron 50.0%
CCCATATACGAGCTGGAGAT+TGG - chr4_3:54298415-54298434 None:intergenic 50.0%
TCCAGCTCGTATATGGGGAA+GGG + chr4_3:54298418-54298437 Msa0647950:intron 50.0%
TCGTATATGGGGAAGGGGAA+TGG + chr4_3:54298424-54298443 Msa0647950:intron 50.0%
CGTATATGGGGAAGGGGAAT+GGG + chr4_3:54298425-54298444 Msa0647950:intron 50.0%
GTATATGGGGAAGGGGAATG+GGG + chr4_3:54298426-54298445 Msa0647950:intron 50.0%
CAGATGCTCACCCATGACTA+AGG - chr4_3:54298479-54298498 None:intergenic 50.0%
! CGAGGCATTCTGGGTTCATT+TGG + chr4_3:54298597-54298616 Msa0647950:intron 50.0%
GGACCTGTACAAGCTACTCA+TGG - chr4_3:54298640-54298659 None:intergenic 50.0%
ACATGATGAGCACGACCTCT+AGG + chr4_3:54298843-54298862 Msa0647950:intron 50.0%
AATGGCGGCTATACAGGGTA+AGG + chr4_3:54298977-54298996 Msa0647950:intron 50.0%
TTAGAGCTCCCGCATATGCA+GGG - chr4_3:54299042-54299061 None:intergenic 50.0%
ATTAGAGCTCCCGCATATGC+AGG - chr4_3:54299043-54299062 None:intergenic 50.0%
! TATGCGGGAGCTCTAATGCA+CGG + chr4_3:54299046-54299065 Msa0647950:intron 50.0%
GAATAAGTCAGCAAAGGGGC+AGG + chr4_3:54299265-54299284 Msa0647950:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG - chr4_3:54300197-54300216 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG + chr4_3:54300194-54300213 Msa0647950:CDS 50.0%
ACTTCTATGACTACGGGGAG+AGG - chr4_3:54300291-54300310 None:intergenic 50.0%
CCTCACAGCTTCAGGAAGTT+GGG - chr4_3:54300477-54300496 None:intergenic 50.0%
TCCTCACAGCTTCAGGAAGT+TGG - chr4_3:54300478-54300497 None:intergenic 50.0%
AACTGCATGTACCTCCTCTG+CGG - chr4_3:54300531-54300550 None:intergenic 50.0%
CAGGAAGATGCTATAGCCGA+GGG + chr4_3:54300621-54300640 Msa0647950:intron 50.0%
TGACCTGACTTTAGCGAGTC+TGG - chr4_3:54300682-54300701 None:intergenic 50.0%
GTGAGTGTCAGTGCCGTATC+TGG - chr4_3:54296227-54296246 None:intergenic 55.0%
! GTTCTAATCGAAGGCGTGGC+TGG - chr4_3:54296705-54296724 None:intergenic 55.0%
TCGCAGAAGCCCCTCTTGTT+TGG - chr4_3:54298031-54298050 None:intergenic 55.0%
GGGGCTTCTGCGACTTTCTA+CGG + chr4_3:54298038-54298057 Msa0647950:intron 55.0%
AGTGCACACAGCCTCTAGGT+TGG - chr4_3:54298268-54298287 None:intergenic 55.0%
GCTAAGTGCACACAGCCTCT+AGG - chr4_3:54298272-54298291 None:intergenic 55.0%
GAGGCTGTGTGCACTTAGCT+AGG + chr4_3:54298273-54298292 Msa0647950:intron 55.0%
TAAGTGCACACAGCCCCTCT+AGG - chr4_3:54298346-54298365 None:intergenic 55.0%
CTCCAGCTCGTATATGGGGA+AGG + chr4_3:54298417-54298436 Msa0647950:intron 55.0%
CCAGCTCGTATATGGGGAAG+GGG + chr4_3:54298419-54298438 Msa0647950:intron 55.0%
! ATGCGGGAGCTCTAATGCAC+GGG + chr4_3:54299047-54299066 Msa0647950:intron 55.0%
!! AAGAGAGGGGAAAGGGTGCT+TGG + chr4_3:54299827-54299846 Msa0647950:intron 55.0%
!! AGAGAGGGGAAAGGGTGCTT+GGG + chr4_3:54299828-54299847 Msa0647950:intron 55.0%
!! AAAGGGTGCTTGGGGGTAAC+TGG + chr4_3:54299837-54299856 Msa0647950:intron 55.0%
CACAGCTTCAGGAAGTTGGG+CGG - chr4_3:54300474-54300493 None:intergenic 55.0%
CCCAACTTCCTGAAGCTGTG+AGG + chr4_3:54300474-54300493 Msa0647950:CDS 55.0%
GCAGGAAGATGCTATAGCCG+AGG + chr4_3:54300620-54300639 Msa0647950:intron 55.0%
TGCACACAGCCCCTCTAGGT+TGG - chr4_3:54298342-54298361 None:intergenic 60.0%
CCCCTTCCCCATATACGAGC+TGG - chr4_3:54298422-54298441 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_3:54299015-54299034 Msa0647950:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr4_3:54299030-54299049 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr4_3:54299031-54299050 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr4_3:54299030-54299049 Msa0647950:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr4_3:54299031-54299050 Msa0647950:intron 60.0%
!! GAGAGGGGAAAGGGTGCTTG+GGG + chr4_3:54299829-54299848 Msa0647950:intron 60.0%
!! AGAGGGGAAAGGGTGCTTGG+GGG + chr4_3:54299830-54299849 Msa0647950:intron 60.0%
!! ACCTGCTCAAAGTGCCGCAG+AGG + chr4_3:54300514-54300533 Msa0647950:CDS 60.0%
TCCTCTGCGGCACTTTGAGC+AGG - chr4_3:54300518-54300537 None:intergenic 60.0%
!! TGCTCAAAGTGCCGCAGAGG+AGG + chr4_3:54300517-54300536 Msa0647950:CDS 60.0%
GGGCCAGACTCGCTAAAGTC+AGG + chr4_3:54300676-54300695 Msa0647950:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_3:54299017-54299036 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr4_3:54299032-54299051 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr4_3:54299036-54299055 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr4_3:54299037-54299056 None:intergenic 65.0%
CTACGGGGAGAGGAGAGAGC+AGG - chr4_3:54300281-54300300 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54295656 54300990 54295656 ID=Msa0647950;Name=Msa0647950
chr4_3 mRNA 54295656 54300990 54295656 ID=Msa0647950-mRNA-1;Parent=Msa0647950;Name=Msa0647950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=239|0.66|1|1|1|1|4|286|167
chr4_3 exon 54295656 54296006 54295656 ID=Msa0647950-mRNA-1:exon:13683;Parent=Msa0647950-mRNA-1
chr4_3 exon 54300133 54300254 54300133 ID=Msa0647950-mRNA-1:exon:13684;Parent=Msa0647950-mRNA-1
chr4_3 exon 54300350 54300538 54300350 ID=Msa0647950-mRNA-1:exon:13685;Parent=Msa0647950-mRNA-1
chr4_3 exon 54300624 54300990 54300624 ID=Msa0647950-mRNA-1:exon:13686;Parent=Msa0647950-mRNA-1
chr4_3 five_prime_UTR 54295656 54295894 54295656 ID=Msa0647950-mRNA-1:five_prime_utr;Parent=Msa0647950-mRNA-1
chr4_3 CDS 54295895 54296006 54295895 ID=Msa0647950-mRNA-1:cds;Parent=Msa0647950-mRNA-1
chr4_3 CDS 54300133 54300254 54300133 ID=Msa0647950-mRNA-1:cds;Parent=Msa0647950-mRNA-1
chr4_3 CDS 54300350 54300538 54300350 ID=Msa0647950-mRNA-1:cds;Parent=Msa0647950-mRNA-1
chr4_3 CDS 54300624 54300704 54300624 ID=Msa0647950-mRNA-1:cds;Parent=Msa0647950-mRNA-1
chr4_3 three_prime_UTR 54300705 54300990 54300705 ID=Msa0647950-mRNA-1:three_prime_utr;Parent=Msa0647950-mRNA-1
Gene Sequence

>Msa0647950

ATGGAGAAGGTGATGAACATTCTGAAACCGAAACCAAATCCGCAACAGTTATTGCGAGATTGGCAACGTAAGCTTCGACAAGAGTGTCGAAACATTGAACGACAAATTCGCGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCCGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAATGGCTGTTGCTATGCAAGAGTTCAGCAAAGAAATGACCAAGGCAGGAGTAATTGAGGAGATAGTAAACGATGCTGTTGACTCAGCATTAGATTCTGAGGACATAGAAGATGAAATAGATGAAGAAGTTGATAAAGTCTTAACTGAATTAGCTGGTGAGACAGCCGCCCAACTTCCTGAAGCTGTGAGGAAACAAAAGGTGAAGCAACCTGCTCAAAGTGCCGCAGAGGAGGAAGATGCTATAGCCGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATTAGGGCCAGACTCGCTAAAGTCAGGTCATAA

Protein sequence

>Msa0647950

MEKVMNILKPKPNPQQLLRDWQRKLRQECRNIERQIRAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIDEEVDKVLTELAGETAAQLPEAVRKQKVKQPAQSAAEEEDAIAEGVDDEEEMEEIRARLAKVRS*