AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760670 MtrunA17_Chr5g0409451 89.163 203 20 1 1 201 1 203 3.37e-124 349
Msa0760670 MtrunA17_Chr6g0469701 33.728 169 106 3 27 192 11 176 5.17e-21 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760670 AT4G19100.1 61.538 169 62 1 35 200 45 213 3.50e-62 192
Msa0760670 AT4G19100.2 76.636 107 25 0 94 200 44 150 1.81e-57 178
Msa0760670 AT5G52780.1 43.333 90 51 0 103 192 76 165 2.70e-19 81.3

Find 50 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCCCTTTGGACCCTTTA+AGG 0.095561 5_2:+17257268 None:intergenic
AACAAAAGACCAACACTTAA+TGG 0.213710 5_2:+17257074 None:intergenic
TGAAAATTGATGTGCCAAAT+TGG 0.226664 5_2:-17257019 Msa0760670:CDS
ACCAATACAATCAACCTTAA+AGG 0.238228 5_2:-17257282 Msa0760670:CDS
ACAAGAAATGGAACCCAATT+TGG 0.284797 5_2:+17257005 None:intergenic
TTAAAGGGTCCAAAGGGATT+TGG 0.345555 5_2:-17257266 Msa0760670:CDS
ATTGAGAGAAGGCTCACTTT+TGG 0.347109 5_2:-17256913 Msa0760670:CDS
CCCTTTAAGGTTGATTGTAT+TGG 0.349809 5_2:+17257281 None:intergenic
CGGGATTGTTTCTGCTAGTT+GGG 0.358281 5_2:-17256940 Msa0760670:CDS
TAGTTTAATCCATTTGTAGA+AGG 0.370247 5_2:-17256771 Msa0760670:three_prime_UTR
GGGGTAGGTCCAAATCCCTT+TGG 0.373175 5_2:+17257257 None:intergenic
TAAACTAATATAATCAAGTA+TGG 0.374006 5_2:+17256787 None:intergenic
ATTCTGTTTGTCACTACTTC+AGG 0.385394 5_2:+17257128 None:intergenic
CCAATACAATCAACCTTAAA+GGG 0.387478 5_2:-17257281 Msa0760670:CDS
TATCTCACTCACACTACTAC+TGG 0.395799 5_2:-17257805 Msa0760670:five_prime_UTR
ACGGGATTGTTTCTGCTAGT+TGG 0.402912 5_2:-17256941 Msa0760670:CDS
AGTAGTGTGAGTGAGATAAT+AGG 0.406336 5_2:+17257810 None:intergenic
AAGCTGATTCCTTCTACAAA+TGG 0.408001 5_2:+17256762 None:intergenic
AAGAAGAAAGACACAAGAAA+TGG 0.410807 5_2:+17256993 None:intergenic
TGGTAAGACAAATAATATAT+AGG 0.419104 5_2:+17256807 None:intergenic
GTAGAATGGCATTGTCTGTT+GGG 0.421677 5_2:-17257100 Msa0760670:CDS
GGACTGAAGCACAAAAGAAT+TGG 0.434810 5_2:-17256887 Msa0760670:CDS
GAAAATTGATGTGCCAAATT+GGG 0.437713 5_2:-17257018 Msa0760670:CDS
AATAGAGAATTGTGACTTGT+TGG 0.439056 5_2:+17257340 None:intergenic
AATAGGTGCTCCAGAGGATA+AGG 0.449309 5_2:+17257827 None:intergenic
AAAAGTGAGCCTTCTCTCAA+TGG 0.454729 5_2:+17256915 None:intergenic
GAAGAAGATAGAAGAGAGCA+AGG 0.472324 5_2:-17257158 Msa0760670:CDS
GTAGTGACAAACAGAATGAT+AGG 0.478411 5_2:-17257122 Msa0760670:CDS
CAATCCACACTTTCTTCACA+AGG 0.496561 5_2:-17257692 Msa0760670:intron
GTTGGGATTCCATTAAGTGT+TGG 0.507152 5_2:-17257083 Msa0760670:CDS
GACATCACAACCTTATCCTC+TGG 0.507966 5_2:-17257837 None:intergenic
AAACAGAATGATAGGTAGAA+TGG 0.509942 5_2:-17257114 Msa0760670:CDS
TCAACCTTAAAGGGTCCAAA+GGG 0.524488 5_2:-17257272 Msa0760670:CDS
GGTAGAATGGCATTGTCTGT+TGG 0.525608 5_2:-17257101 Msa0760670:CDS
GTGGATGAAGATTACTACAT+AGG 0.544750 5_2:+17257757 None:intergenic
ATCAACCTTAAAGGGTCCAA+AGG 0.552341 5_2:-17257273 Msa0760670:CDS
GTTGGTGAGTATATAAATGT+TGG 0.562406 5_2:+17257358 None:intergenic
GAACAAACAAGAAGATGATG+AGG 0.564081 5_2:-17257198 Msa0760670:CDS
ATCTCACTCACACTACTACT+GGG 0.574433 5_2:-17257804 Msa0760670:five_prime_UTR
AACTGTGGGAGGAGCTGTAG+TGG 0.582607 5_2:+17257717 None:intergenic
AGGAGCTGTAGTGGACATCA+TGG 0.584768 5_2:+17257726 None:intergenic
GGAACCTTGTGAAGAAAGTG+TGG 0.588269 5_2:+17257688 None:intergenic
AAGTGTGGATTGAGAACTGT+GGG 0.594418 5_2:+17257703 None:intergenic
ACTTAGAGGTGGATCTCAGA+AGG 0.596279 5_2:-17256847 Msa0760670:CDS
GGACATCATGGTATGATATG+TGG 0.612717 5_2:+17257738 None:intergenic
TGAGATAATAGGTGCTCCAG+AGG 0.628816 5_2:+17257821 None:intergenic
GATGAAGATTACTACATAGG+TGG 0.630421 5_2:+17257760 None:intergenic
AGTTGGGATCCATTGAGAGA+AGG 0.634998 5_2:-17256924 Msa0760670:CDS
AAAGTGTGGATTGAGAACTG+TGG 0.718464 5_2:+17257702 None:intergenic
TGTGGATTGAGAACTGTGGG+AGG 0.750686 5_2:+17257706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAAATTTTGTAAAATAAT+TGG + chr5_2:17256967-17256986 None:intergenic 10.0%
!!! CTTAAATTTTGTAAAATAAT+TGG + chr5_2:17256967-17256986 None:intergenic 10.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_2:17257498-17257517 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_2:17257498-17257517 Msa0760670:intron 15.0%
!! TAAACTAATATAATCAAGTA+TGG + chr5_2:17257758-17257777 None:intergenic 15.0%
!!! ATTTTATTGGCTTAAAATTT+TGG - chr5_2:17257825-17257844 Msa0760670:five_prime_UTR 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_2:17257498-17257517 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_2:17257498-17257517 Msa0760670:intron 15.0%
!! TAAACTAATATAATCAAGTA+TGG + chr5_2:17257758-17257777 None:intergenic 15.0%
!!! ATTTTATTGGCTTAAAATTT+TGG - chr5_2:17257825-17257844 Msa0760670:five_prime_UTR 15.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_2:17257308-17257327 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_2:17257309-17257328 None:intergenic 20.0%
!! TGGTAAGACAAATAATATAT+AGG + chr5_2:17257738-17257757 None:intergenic 20.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_2:17257308-17257327 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_2:17257309-17257328 None:intergenic 20.0%
!! TGGTAAGACAAATAATATAT+AGG + chr5_2:17257738-17257757 None:intergenic 20.0%
!!! AAACATTTTGAGAACTTGAA+AGG + chr5_2:17256935-17256954 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_2:17257307-17257326 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_2:17257556-17257575 Msa0760670:intron 25.0%
! TAGTTTAATCCATTTGTAGA+AGG - chr5_2:17257771-17257790 Msa0760670:five_prime_UTR 25.0%
!!! AAACATTTTGAGAACTTGAA+AGG + chr5_2:17256935-17256954 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_2:17257307-17257326 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_2:17257556-17257575 Msa0760670:intron 25.0%
! TAGTTTAATCCATTTGTAGA+AGG - chr5_2:17257771-17257790 Msa0760670:five_prime_UTR 25.0%
TTATCCTGTGCTTAAAAATG+AGG + chr5_2:17257008-17257027 None:intergenic 30.0%
! GTTGGTGAGTATATAAATGT+TGG + chr5_2:17257187-17257206 None:intergenic 30.0%
! AATAGAGAATTGTGACTTGT+TGG + chr5_2:17257205-17257224 None:intergenic 30.0%
ACCAATACAATCAACCTTAA+AGG - chr5_2:17257260-17257279 Msa0760670:CDS 30.0%
CCAATACAATCAACCTTAAA+GGG - chr5_2:17257261-17257280 Msa0760670:CDS 30.0%
!!! TTGTTTTTTTTCTTTGGGGT+AGG + chr5_2:17257303-17257322 None:intergenic 30.0%
!! CTTCTTGTTTGTTCTTTTTG+AGG + chr5_2:17257338-17257357 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_2:17257428-17257447 Msa0760670:intron 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_2:17257471-17257490 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_2:17257523-17257542 Msa0760670:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_2:17257524-17257543 Msa0760670:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_2:17257552-17257571 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_2:17257555-17257574 Msa0760670:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_2:17257667-17257686 Msa0760670:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_2:17257681-17257700 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_2:17257681-17257700 Msa0760670:intron 30.0%
TTATCCTGTGCTTAAAAATG+AGG + chr5_2:17257008-17257027 None:intergenic 30.0%
! GTTGGTGAGTATATAAATGT+TGG + chr5_2:17257187-17257206 None:intergenic 30.0%
! AATAGAGAATTGTGACTTGT+TGG + chr5_2:17257205-17257224 None:intergenic 30.0%
ACCAATACAATCAACCTTAA+AGG - chr5_2:17257260-17257279 Msa0760670:CDS 30.0%
CCAATACAATCAACCTTAAA+GGG - chr5_2:17257261-17257280 Msa0760670:CDS 30.0%
!!! TTGTTTTTTTTCTTTGGGGT+AGG + chr5_2:17257303-17257322 None:intergenic 30.0%
!! CTTCTTGTTTGTTCTTTTTG+AGG + chr5_2:17257338-17257357 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_2:17257428-17257447 Msa0760670:intron 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_2:17257471-17257490 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_2:17257523-17257542 Msa0760670:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_2:17257524-17257543 Msa0760670:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_2:17257552-17257571 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_2:17257555-17257574 Msa0760670:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_2:17257667-17257686 Msa0760670:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_2:17257681-17257700 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_2:17257681-17257700 Msa0760670:intron 30.0%
AGTAGTGTGAGTGAGATAAT+AGG + chr5_2:17256735-17256754 None:intergenic 35.0%
GATGAAGATTACTACATAGG+TGG + chr5_2:17256785-17256804 None:intergenic 35.0%
GTGGATGAAGATTACTACAT+AGG + chr5_2:17256788-17256807 None:intergenic 35.0%
!! TCTACCTCATTTTTAAGCAC+AGG - chr5_2:17257001-17257020 Msa0760670:CDS 35.0%
CAGGATAACATGAACAACTT+AGG - chr5_2:17257020-17257039 Msa0760670:CDS 35.0%
ACATGAACAACTTAGGAACT+AGG - chr5_2:17257027-17257046 Msa0760670:CDS 35.0%
GAACTAGGATAGTACTACAT+AGG - chr5_2:17257042-17257061 Msa0760670:CDS 35.0%
!! CCCTTTAAGGTTGATTGTAT+TGG + chr5_2:17257264-17257283 None:intergenic 35.0%
GAACAAACAAGAAGATGATG+AGG - chr5_2:17257344-17257363 Msa0760670:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_2:17257417-17257436 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_2:17257420-17257439 Msa0760670:intron 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_2:17257540-17257559 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCTCTTTT+AGG - chr5_2:17257570-17257589 Msa0760670:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_2:17257684-17257703 Msa0760670:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_2:17257783-17257802 None:intergenic 35.0%
AGTAGTGTGAGTGAGATAAT+AGG + chr5_2:17256735-17256754 None:intergenic 35.0%
GATGAAGATTACTACATAGG+TGG + chr5_2:17256785-17256804 None:intergenic 35.0%
GTGGATGAAGATTACTACAT+AGG + chr5_2:17256788-17256807 None:intergenic 35.0%
!! TCTACCTCATTTTTAAGCAC+AGG - chr5_2:17257001-17257020 Msa0760670:CDS 35.0%
CAGGATAACATGAACAACTT+AGG - chr5_2:17257020-17257039 Msa0760670:CDS 35.0%
ACATGAACAACTTAGGAACT+AGG - chr5_2:17257027-17257046 Msa0760670:CDS 35.0%
GAACTAGGATAGTACTACAT+AGG - chr5_2:17257042-17257061 Msa0760670:CDS 35.0%
!! CCCTTTAAGGTTGATTGTAT+TGG + chr5_2:17257264-17257283 None:intergenic 35.0%
GAACAAACAAGAAGATGATG+AGG - chr5_2:17257344-17257363 Msa0760670:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_2:17257417-17257436 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_2:17257420-17257439 Msa0760670:intron 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_2:17257540-17257559 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCTCTTTT+AGG - chr5_2:17257570-17257589 Msa0760670:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_2:17257684-17257703 Msa0760670:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_2:17257783-17257802 None:intergenic 35.0%
TATCTCACTCACACTACTAC+TGG - chr5_2:17256737-17256756 Msa0760670:three_prime_UTR 40.0%
ATCTCACTCACACTACTACT+GGG - chr5_2:17256738-17256757 Msa0760670:three_prime_UTR 40.0%
GGACATCATGGTATGATATG+TGG + chr5_2:17256807-17256826 None:intergenic 40.0%
! AAGTGTGGATTGAGAACTGT+GGG + chr5_2:17256842-17256861 None:intergenic 40.0%
! AAAGTGTGGATTGAGAACTG+TGG + chr5_2:17256843-17256862 None:intergenic 40.0%
CAATCCACACTTTCTTCACA+AGG - chr5_2:17256850-17256869 Msa0760670:CDS 40.0%
ATCAACCTTAAAGGGTCCAA+AGG - chr5_2:17257269-17257288 Msa0760670:CDS 40.0%
TCAACCTTAAAGGGTCCAAA+GGG - chr5_2:17257270-17257289 Msa0760670:CDS 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_2:17257277-17257296 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_2:17257276-17257295 Msa0760670:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_2:17257384-17257403 Msa0760670:intron 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_2:17257442-17257461 Msa0760670:intron 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_2:17257459-17257478 Msa0760670:intron 40.0%
!! GCTCTTTTAGGAGTCAGTTA+CGG - chr5_2:17257582-17257601 Msa0760670:intron 40.0%
!! CTCTTTTAGGAGTCAGTTAC+GGG - chr5_2:17257583-17257602 Msa0760670:intron 40.0%
AAAAGTGAGCCTTCTCTCAA+TGG + chr5_2:17257630-17257649 None:intergenic 40.0%
! ATTGAGAGAAGGCTCACTTT+TGG - chr5_2:17257629-17257648 Msa0760670:intron 40.0%
!! TTGAGAGAAGGCTCACTTTT+GGG - chr5_2:17257630-17257649 Msa0760670:intron 40.0%
GGACTGAAGCACAAAAGAAT+TGG - chr5_2:17257655-17257674 Msa0760670:intron 40.0%
TATCTCACTCACACTACTAC+TGG - chr5_2:17256737-17256756 Msa0760670:three_prime_UTR 40.0%
ATCTCACTCACACTACTACT+GGG - chr5_2:17256738-17256757 Msa0760670:three_prime_UTR 40.0%
GGACATCATGGTATGATATG+TGG + chr5_2:17256807-17256826 None:intergenic 40.0%
! AAGTGTGGATTGAGAACTGT+GGG + chr5_2:17256842-17256861 None:intergenic 40.0%
! AAAGTGTGGATTGAGAACTG+TGG + chr5_2:17256843-17256862 None:intergenic 40.0%
CAATCCACACTTTCTTCACA+AGG - chr5_2:17256850-17256869 Msa0760670:CDS 40.0%
ATCAACCTTAAAGGGTCCAA+AGG - chr5_2:17257269-17257288 Msa0760670:CDS 40.0%
TCAACCTTAAAGGGTCCAAA+GGG - chr5_2:17257270-17257289 Msa0760670:CDS 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_2:17257277-17257296 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_2:17257276-17257295 Msa0760670:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_2:17257384-17257403 Msa0760670:intron 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_2:17257442-17257461 Msa0760670:intron 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_2:17257459-17257478 Msa0760670:intron 40.0%
!! GCTCTTTTAGGAGTCAGTTA+CGG - chr5_2:17257582-17257601 Msa0760670:intron 40.0%
!! CTCTTTTAGGAGTCAGTTAC+GGG - chr5_2:17257583-17257602 Msa0760670:intron 40.0%
AAAAGTGAGCCTTCTCTCAA+TGG + chr5_2:17257630-17257649 None:intergenic 40.0%
! ATTGAGAGAAGGCTCACTTT+TGG - chr5_2:17257629-17257648 Msa0760670:intron 40.0%
!! TTGAGAGAAGGCTCACTTTT+GGG - chr5_2:17257630-17257649 Msa0760670:intron 40.0%
GGACTGAAGCACAAAAGAAT+TGG - chr5_2:17257655-17257674 Msa0760670:intron 40.0%
AATAGGTGCTCCAGAGGATA+AGG + chr5_2:17256718-17256737 None:intergenic 45.0%
TGAGATAATAGGTGCTCCAG+AGG + chr5_2:17256724-17256743 None:intergenic 45.0%
GGAACCTTGTGAAGAAAGTG+TGG + chr5_2:17256857-17256876 None:intergenic 45.0%
AGAAGAGAGAGAGAGAGAGA+AGG + chr5_2:17256878-17256897 None:intergenic 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_2:17257441-17257460 Msa0760670:intron 45.0%
!! ACGGGATTGTTTCTGCTAGT+TGG - chr5_2:17257601-17257620 Msa0760670:intron 45.0%
!! CGGGATTGTTTCTGCTAGTT+GGG - chr5_2:17257602-17257621 Msa0760670:intron 45.0%
AGTTGGGATCCATTGAGAGA+AGG - chr5_2:17257618-17257637 Msa0760670:intron 45.0%
ACTTAGAGGTGGATCTCAGA+AGG - chr5_2:17257695-17257714 Msa0760670:CDS 45.0%
AATAGGTGCTCCAGAGGATA+AGG + chr5_2:17256718-17256737 None:intergenic 45.0%
TGAGATAATAGGTGCTCCAG+AGG + chr5_2:17256724-17256743 None:intergenic 45.0%
GGAACCTTGTGAAGAAAGTG+TGG + chr5_2:17256857-17256876 None:intergenic 45.0%
AGAAGAGAGAGAGAGAGAGA+AGG + chr5_2:17256878-17256897 None:intergenic 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_2:17257441-17257460 Msa0760670:intron 45.0%
!! ACGGGATTGTTTCTGCTAGT+TGG - chr5_2:17257601-17257620 Msa0760670:intron 45.0%
!! CGGGATTGTTTCTGCTAGTT+GGG - chr5_2:17257602-17257621 Msa0760670:intron 45.0%
AGTTGGGATCCATTGAGAGA+AGG - chr5_2:17257618-17257637 Msa0760670:intron 45.0%
ACTTAGAGGTGGATCTCAGA+AGG - chr5_2:17257695-17257714 Msa0760670:CDS 45.0%
!!! TTTTTTTTTATCAATTTTAT+TGG - chr5_2:17257812-17257831 Msa0760670:five_prime_UTR 5.0%
!!! TTTTTTTTTATCAATTTTAT+TGG - chr5_2:17257812-17257831 Msa0760670:five_prime_UTR 5.0%
!! AGGAGCTGTAGTGGACATCA+TGG + chr5_2:17256819-17256838 None:intergenic 50.0%
! TGTGGATTGAGAACTGTGGG+AGG + chr5_2:17256839-17256858 None:intergenic 50.0%
!! GAGAAGGCTCACTTTTGGGA+TGG - chr5_2:17257634-17257653 Msa0760670:intron 50.0%
!! AGGAGCTGTAGTGGACATCA+TGG + chr5_2:17256819-17256838 None:intergenic 50.0%
! TGTGGATTGAGAACTGTGGG+AGG + chr5_2:17256839-17256858 None:intergenic 50.0%
!! GAGAAGGCTCACTTTTGGGA+TGG - chr5_2:17257634-17257653 Msa0760670:intron 50.0%
AACTGTGGGAGGAGCTGTAG+TGG + chr5_2:17256828-17256847 None:intergenic 55.0%
GGGGTAGGTCCAAATCCCTT+TGG + chr5_2:17257288-17257307 None:intergenic 55.0%
AACTGTGGGAGGAGCTGTAG+TGG + chr5_2:17256828-17256847 None:intergenic 55.0%
GGGGTAGGTCCAAATCCCTT+TGG + chr5_2:17257288-17257307 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 17256711 17257853 17256711 ID=Msa0760670;Name=Msa0760670
chr5_2 mRNA 17256711 17257853 17256711 ID=Msa0760670-mRNA-1;Parent=Msa0760670;Name=Msa0760670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|131|201
chr5_2 exon 17256711 17257393 17256711 ID=Msa0760670-mRNA-1:exon:7657;Parent=Msa0760670-mRNA-1
chr5_2 exon 17257693 17257853 17257693 ID=Msa0760670-mRNA-1:exon:7656;Parent=Msa0760670-mRNA-1
chr5_2 five_prime_UTR 17257747 17257853 17257747 ID=Msa0760670-mRNA-1:five_prime_utr;Parent=Msa0760670-mRNA-1
chr5_2 CDS 17257693 17257746 17257693 ID=Msa0760670-mRNA-1:cds;Parent=Msa0760670-mRNA-1
chr5_2 CDS 17256842 17257393 17256842 ID=Msa0760670-mRNA-1:cds;Parent=Msa0760670-mRNA-1
chr5_2 three_prime_UTR 17256711 17256841 17256711 ID=Msa0760670-mRNA-1:three_prime_utr;Parent=Msa0760670-mRNA-1
Gene Sequence

>Msa0760670

ATGATGTCCACTACAGCTCCTCCCACAGTTCTCAATCCACACTTTCTTCACAAGCATGTTAGACACACCAACATTTATATACTCACCAACAAGTCACAATTCTCTATTCATAAATCATCACAATTTCACTTCTCTCACATTGTACCAATACAATCAACCTTAAAGGGTCCAAAGGGATTTGGACCTACCCCAAAGAAAAAAAACAAGACAATCAAGAACCTCAAAAAGAACAAACAAGAAGATGATGAGGAAGAAGAAGAAGAAGAAGAAGAAGATAGAAGAGAGCAAGGAATCATTCCTGAAGTAGTGACAAACAGAATGATAGGTAGAATGGCATTGTCTGTTGGGATTCCATTAAGTGTTGGTCTTTTGTTCTTTCCATTTTTTTACTATCTTAAAGTTGGTTTGAAAATTGATGTGCCAAATTGGGTTCCATTTCTTGTGTCTTTCTTCTTTTTTGGGTCTGCTCTTTTAGGAGTCAGTTACGGGATTGTTTCTGCTAGTTGGGATCCATTGAGAGAAGGCTCACTTTTGGGATGGACTGAAGCACAAAAGAATTGGCCTGTTTTTTGGAAATCACTTAGAGGTGGATCTCAGAAGGATTAG
Protein sequence

>Msa0760670

MMSTTAPPTVLNPHFLHKHVRHTNIYILTNKSQFSIHKSSQFHFSHIVPIQSTLKGPKGFGPTPKKKNKTIKNLKKNKQEDDEEEEEEEEEDRREQGIIPEVVTNRMIGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSASWDPLREGSLLGWTEAQKNWPVFWKSLRGGSQKD*