AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104420 MtrunA17_Chr1g0158881 88.679 636 5 3 3 571 143 778 0.0 1108
Msa0104420 MtrunA17_Chr3g0135721 48.636 623 233 12 19 567 66 675 0.0 538
Msa0104420 MtrunA17_Chr3g0135761 51.252 599 214 15 32 564 79 665 0.0 533
Msa0104420 MtrunA17_Chr5g0432631 57.424 458 150 6 132 547 207 661 1.55e-171 508
Msa0104420 MtrunA17_Chr8g0362771 47.000 600 240 15 33 567 103 689 4.33e-168 494
Msa0104420 MtrunA17_Chr5g0432641 45.989 561 233 11 31 547 89 623 1.85e-145 434
Msa0104420 MtrunA17_Chr4g0052411 47.884 449 181 4 156 552 230 677 5.30e-128 390
Msa0104420 MtrunA17_Chr7g0217421 54.294 361 156 4 147 500 32 390 1.14e-126 377
Msa0104420 MtrunA17_Chr2g0297281 47.991 448 181 5 156 552 287 733 2.57e-126 388
Msa0104420 MtrunA17_Chr3g0143721 47.473 455 183 5 149 548 244 697 4.42e-126 386
Msa0104420 MtrunA17_Chr7g0248361 48.209 363 174 6 152 503 189 548 3.96e-106 332
Msa0104420 MtrunA17_Chr6g0476861 44.643 392 193 6 125 503 173 553 4.38e-105 331
Msa0104420 MtrunA17_Chr7g0260601 40.206 485 228 9 126 556 214 690 1.59e-103 327
Msa0104420 MtrunA17_Chr4g0031821 43.624 447 195 11 152 547 317 757 2.53e-103 330
Msa0104420 MtrunA17_Chr5g0432391 43.458 428 150 6 151 539 49 423 4.01e-99 307
Msa0104420 MtrunA17_Chr5g0429571 49.311 363 161 10 156 499 314 672 2.69e-95 308
Msa0104420 MtrunA17_Chr3g0104211 48.199 361 168 8 156 499 305 663 4.38e-94 305
Msa0104420 MtrunA17_Chr3g0094871 45.098 357 169 7 157 503 13 352 1.01e-93 294
Msa0104420 MtrunA17_Chr2g0331161 39.310 435 213 9 157 547 417 844 2.62e-81 273
Msa0104420 MtrunA17_Chr8g0388371 43.750 368 180 8 157 500 406 770 1.51e-80 271
Msa0104420 MtrunA17_Chr1g0168321 41.061 358 160 6 152 498 161 478 7.32e-80 260
Msa0104420 MtrunA17_Chr6g0456351 49.259 270 134 2 146 412 308 577 3.93e-72 242
Msa0104420 MtrunA17_Chr3g0135791 47.308 260 94 3 343 564 7 261 5.64e-72 233
Msa0104420 MtrunA17_Chr3g0135781 60.440 182 63 3 132 312 40 213 7.42e-67 216
Msa0104420 MtrunA17_Chr3g0129971 35.666 443 238 9 151 546 292 734 4.08e-59 211
Msa0104420 MtrunA17_Chr1g0180791 40.856 257 143 4 130 381 457 709 2.34e-52 191
Msa0104420 MtrunA17_Chr1g0180791 42.601 223 126 2 157 377 207 429 1.96e-45 171
Msa0104420 MtrunA17_Chr2g0327121 40.625 256 143 4 131 381 460 711 8.65e-52 190
Msa0104420 MtrunA17_Chr2g0327121 42.601 223 126 2 157 377 209 431 6.56e-46 173
Msa0104420 MtrunA17_Chr8g0357301 32.787 366 217 8 165 504 480 842 1.54e-51 190
Msa0104420 MtrunA17_Chr7g0264521 39.689 257 146 4 130 381 458 710 1.19e-50 186
Msa0104420 MtrunA17_Chr7g0264521 42.152 223 127 2 157 377 208 430 5.80e-45 170
Msa0104420 MtrunA17_Chr1g0192151 43.578 218 118 2 151 363 163 380 1.24e-50 180
Msa0104420 MtrunA17_Chr4g0014731 43.578 218 118 2 151 363 164 381 1.62e-50 179
Msa0104420 MtrunA17_Chr3g0141901 43.111 225 121 3 156 374 137 360 2.95e-50 178
Msa0104420 MtrunA17_Chr3g0135741 58.955 134 52 1 343 473 5 138 3.72e-50 169
Msa0104420 MtrunA17_Chr3g0145011 42.667 225 122 3 156 374 140 363 9.86e-50 177
Msa0104420 MtrunA17_Chr4g0050561 38.976 254 149 2 156 403 157 410 2.61e-49 176
Msa0104420 MtrunA17_Chr8g0345461 36.863 255 156 2 151 400 161 415 4.14e-48 173
Msa0104420 MtrunA17_Chr7g0255651 42.918 233 117 4 156 376 283 511 9.64e-48 175
Msa0104420 MtrunA17_Chr7g0255651 30.841 214 135 5 174 376 29 240 1.01e-19 92.8
Msa0104420 MtrunA17_Chr1g0182711 37.600 250 147 3 154 396 187 434 4.83e-47 171
Msa0104420 MtrunA17_Chr7g0262801 37.600 250 147 3 154 396 186 433 8.69e-47 170
Msa0104420 MtrunA17_Chr1g0200081 36.471 255 156 3 151 400 171 424 6.25e-46 167
Msa0104420 MtrunA17_Chr2g0277831 41.593 226 127 4 153 374 532 756 3.31e-44 168
Msa0104420 MtrunA17_Chr2g0277831 43.636 220 119 2 157 371 245 464 1.98e-42 162
Msa0104420 MtrunA17_Chr3g0108321 43.979 191 98 3 151 334 155 343 7.24e-44 160
Msa0104420 MtrunA17_Chr7g0255721 39.516 248 146 3 146 389 676 923 4.89e-43 165
Msa0104420 MtrunA17_Chr7g0255721 39.801 201 119 2 183 381 413 613 2.07e-31 130
Msa0104420 MtrunA17_Chr7g0255691 40.948 232 129 3 156 379 287 518 1.16e-41 158
Msa0104420 MtrunA17_Chr7g0255691 36.681 229 129 6 160 377 22 245 7.73e-28 117
Msa0104420 MtrunA17_Chr3g0086411 37.586 290 146 10 150 418 211 486 1.46e-39 151
Msa0104420 MtrunA17_Chr3g0086411 42.754 138 65 4 242 367 7 142 1.06e-20 95.5
Msa0104420 MtrunA17_Chr7g0255641 37.097 248 152 3 146 389 649 896 7.75e-39 152
Msa0104420 MtrunA17_Chr7g0255641 39.512 205 114 6 170 370 411 609 9.72e-30 124
Msa0104420 MtrunA17_Chr4g0026631 39.655 232 126 8 144 367 116 341 8.02e-39 147
Msa0104420 MtrunA17_Chr2g0316851 38.197 233 134 5 151 374 590 821 8.86e-38 149
Msa0104420 MtrunA17_Chr8g0387641 38.934 244 137 7 142 377 507 746 3.00e-37 147
Msa0104420 MtrunA17_Chr4g0043381 34.866 261 164 4 157 411 839 1099 6.26e-37 147
Msa0104420 MtrunA17_Chr2g0321241 38.793 232 128 8 144 367 121 346 1.28e-36 141
Msa0104420 MtrunA17_Chr1g0202381 38.819 237 135 7 144 373 456 689 1.83e-36 145
Msa0104420 MtrunA17_Chr6g0462581 40.164 244 133 8 142 377 486 724 3.12e-36 144
Msa0104420 MtrunA17_Chr3g0086401 38.000 250 132 6 150 377 381 629 3.95e-36 143
Msa0104420 MtrunA17_Chr3g0086401 37.662 231 125 6 151 367 88 313 2.24e-32 132
Msa0104420 MtrunA17_Chr1g0190401 28.543 501 236 16 159 546 681 1172 5.78e-36 144
Msa0104420 MtrunA17_Chr1g0202371 39.462 223 127 6 156 373 398 617 7.08e-35 140
Msa0104420 MtrunA17_Chr5g0397121 36.641 262 149 8 129 377 481 738 1.25e-34 139
Msa0104420 MtrunA17_Chr1g0204031 38.174 241 139 8 144 377 545 782 1.40e-34 139
Msa0104420 MtrunA17_Chr1g0195741 38.912 239 133 7 142 371 924 1158 2.39e-34 139
Msa0104420 MtrunA17_Chr6g0459561 36.975 238 135 8 144 372 371 602 1.18e-33 135
Msa0104420 MtrunA17_Chr1g0195731 34.520 281 163 9 108 371 878 1154 1.18e-33 137
Msa0104420 MtrunA17_Chr4g0004121 35.793 271 152 8 144 396 231 497 1.86e-33 134
Msa0104420 MtrunA17_Chr3g0116131 37.657 239 136 7 142 371 888 1122 2.78e-33 135
Msa0104420 MtrunA17_Chr7g0255901 35.371 229 141 5 153 375 638 865 1.71e-32 133
Msa0104420 MtrunA17_Chr2g0327231 40.828 169 92 4 146 309 340 505 4.24e-32 129
Msa0104420 MtrunA17_Chr4g0052271 37.168 226 133 6 153 373 118 339 5.57e-32 127
Msa0104420 MtrunA17_Chr4g0033451 34.074 270 167 6 156 416 381 648 5.95e-32 132
Msa0104420 MtrunA17_Chr4g0038101 37.004 227 135 5 157 377 723 947 1.44e-31 130
Msa0104420 MtrunA17_Chr5g0432671 58.163 98 37 1 351 448 3 96 5.84e-30 113
Msa0104420 MtrunA17_Chr3g0127431 37.387 222 128 6 157 371 86 303 6.94e-29 119
Msa0104420 MtrunA17_Chr3g0127401 33.091 275 160 8 157 414 83 350 2.74e-28 116
Msa0104420 MtrunA17_Chr6g0459541 30.435 276 148 9 142 381 29 296 2.05e-27 113
Msa0104420 MtrunA17_Chr7g0246111 35.510 245 144 8 157 390 214 455 8.13e-27 114
Msa0104420 MtrunA17_Chr6g0459551 35.678 199 119 7 137 332 84 276 5.14e-25 107
Msa0104420 MtrunA17_Chr2g0289231 33.190 232 131 7 117 336 268 487 2.52e-23 103
Msa0104420 MtrunA17_Chr4g0047411 33.493 209 121 5 180 371 202 409 8.97e-22 99.8
Msa0104420 MtrunA17_Chr5g0432681 47.000 100 40 3 461 547 1 100 1.83e-15 74.7
Msa0104420 MtrunA17_Chr8g0392971 40.000 85 51 0 360 444 51 135 8.37e-13 66.6
Msa0104420 MtrunA17_Chr4g0039781 28.761 226 126 8 192 389 370 588 4.19e-12 68.9
Msa0104420 MtrunA17_Chr4g0062081 41.558 77 43 2 159 233 11 87 2.94e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104420 AT5G53170.1 76.572 636 80 4 3 571 173 806 0.0 931
Msa0104420 AT2G26140.1 50.247 607 208 11 30 560 80 668 0.0 548
Msa0104420 AT5G15250.1 48.009 452 182 4 156 555 222 672 4.52e-132 401
Msa0104420 AT1G06430.1 48.214 448 180 5 156 552 218 664 3.68e-127 389
Msa0104420 AT1G06430.3 48.214 448 180 5 156 552 218 664 3.68e-127 389
Msa0104420 AT1G06430.2 48.214 448 180 5 156 552 218 664 3.68e-127 389
Msa0104420 AT2G30950.1 47.991 448 181 5 156 552 225 671 1.41e-125 385
Msa0104420 AT2G30950.2 47.991 448 181 5 156 552 225 671 1.41e-125 385
Msa0104420 AT2G30950.3 47.991 448 181 5 156 552 225 671 1.41e-125 385
Msa0104420 AT2G30950.4 47.991 448 181 5 156 552 229 675 1.73e-125 385
Msa0104420 AT5G42270.1 46.813 455 186 5 149 548 242 695 1.33e-123 380
Msa0104420 AT1G50250.1 46.593 455 187 6 149 548 254 707 1.86e-123 380
Msa0104420 AT1G07510.1 41.538 455 209 10 152 554 321 770 1.59e-103 330
Msa0104420 AT2G29080.1 42.729 447 200 8 152 547 316 757 4.59e-103 329
Msa0104420 AT5G15250.2 54.422 294 106 4 156 422 222 514 4.90e-96 303
Msa0104420 AT3G47060.1 48.760 363 163 10 156 499 323 681 7.01e-96 310
Msa0104420 AT5G58870.1 48.209 363 165 10 156 499 327 685 5.76e-95 308
Msa0104420 AT4G23940.1 44.022 368 179 9 157 500 429 793 1.47e-79 269
Msa0104420 AT3G16290.1 37.130 439 231 6 157 554 409 843 6.22e-78 264
Msa0104420 AT3G02450.1 51.210 248 118 2 157 401 333 580 6.73e-73 245
Msa0104420 AT5G64580.1 35.973 442 232 11 151 543 309 748 2.15e-59 212
Msa0104420 AT3G05530.1 44.495 218 116 2 151 363 164 381 3.01e-51 182
Msa0104420 AT3G53230.1 39.676 247 143 3 140 381 464 709 2.68e-50 186
Msa0104420 AT3G53230.1 41.704 223 128 2 157 377 207 429 1.51e-44 169
Msa0104420 AT1G45000.1 43.556 225 120 3 156 374 137 360 4.85e-50 178
Msa0104420 AT1G79560.3 30.909 385 215 9 157 504 492 862 9.80e-50 185
Msa0104420 AT1G79560.2 30.909 385 215 9 157 504 492 862 1.39e-49 185
Msa0104420 AT1G79560.1 31.105 389 209 9 157 504 492 862 1.44e-49 185
Msa0104420 AT5G03340.1 39.676 247 143 3 140 381 463 708 3.03e-49 183
Msa0104420 AT5G03340.1 42.152 223 127 2 157 377 206 428 5.78e-45 171
Msa0104420 AT5G43010.1 42.667 225 122 3 156 374 137 360 5.90e-49 175
Msa0104420 AT1G09100.1 41.810 232 126 3 141 363 149 380 6.51e-49 176
Msa0104420 AT5G19990.2 38.976 254 149 2 156 403 101 354 6.68e-49 174
Msa0104420 AT5G20000.1 38.976 254 149 2 156 403 159 412 1.19e-48 174
Msa0104420 AT5G19990.1 38.976 254 149 2 156 403 159 412 1.33e-48 174
Msa0104420 AT5G19990.3 38.976 254 149 2 156 403 159 412 1.33e-48 174
Msa0104420 AT1G53780.1 37.354 257 152 4 151 400 333 587 1.82e-48 178
Msa0104420 AT1G53780.4 37.354 257 152 4 151 400 333 587 1.82e-48 178
Msa0104420 AT1G53780.2 37.354 257 152 4 151 400 354 608 1.98e-48 178
Msa0104420 AT1G53780.3 37.354 257 152 4 151 400 332 586 2.13e-48 178
Msa0104420 AT3G09840.1 39.300 257 146 4 131 381 457 709 4.53e-48 179
Msa0104420 AT3G09840.1 42.152 223 127 2 157 377 206 428 4.89e-45 171
Msa0104420 AT1G53750.1 36.863 255 156 2 151 400 161 415 6.59e-48 173
Msa0104420 AT3G56690.1 41.423 239 136 3 146 380 712 950 3.20e-46 175
Msa0104420 AT3G56690.1 35.610 205 130 2 170 372 397 601 1.81e-33 136
Msa0104420 AT5G58290.1 38.961 231 132 3 151 374 148 376 3.50e-45 165
Msa0104420 AT4G29040.1 36.000 250 151 3 154 396 184 431 1.67e-44 164
Msa0104420 AT2G20140.1 36.694 248 152 2 154 396 184 431 2.40e-44 163
Msa0104420 AT3G01610.2 43.534 232 117 4 156 374 231 461 4.02e-41 159
Msa0104420 AT3G01610.2 41.071 224 128 4 157 377 527 749 4.33e-37 147
Msa0104420 AT3G01610.1 43.534 232 117 4 156 374 231 461 4.43e-41 159
Msa0104420 AT3G01610.1 41.071 224 128 4 157 377 527 749 4.73e-37 147
Msa0104420 AT2G03670.1 40.244 246 134 3 128 367 263 501 9.43e-41 156
Msa0104420 AT2G03670.1 31.579 247 161 3 159 397 23 269 1.26e-27 117
Msa0104420 AT1G64110.5 39.754 244 135 7 142 377 502 741 4.59e-38 150
Msa0104420 AT1G64110.3 39.754 244 135 7 142 377 502 741 4.59e-38 150
Msa0104420 AT1G64110.1 39.754 244 135 7 142 377 499 738 4.86e-38 150
Msa0104420 AT1G64110.2 39.754 244 135 7 142 377 504 743 5.01e-38 150
Msa0104420 AT1G64110.4 39.754 244 135 7 142 377 504 743 5.01e-38 150
Msa0104420 AT5G08470.1 37.611 226 133 3 157 377 843 1065 1.73e-37 149
Msa0104420 AT5G08470.3 37.611 226 133 3 157 377 834 1056 1.74e-37 149
Msa0104420 AT3G15120.2 38.961 231 133 4 152 374 723 953 4.53e-37 148
Msa0104420 AT3G15120.1 38.961 231 133 4 152 374 713 943 4.74e-37 148
Msa0104420 AT4G28000.3 38.525 244 137 8 142 377 503 741 1.41e-36 145
Msa0104420 AT4G28000.2 38.525 244 137 8 142 377 503 741 1.62e-36 145
Msa0104420 AT4G28000.1 38.525 244 137 8 142 377 501 739 1.63e-36 145
Msa0104420 AT2G27600.1 38.362 232 129 8 144 367 118 343 7.26e-36 139
Msa0104420 AT3G04340.1 27.767 497 251 15 157 547 783 1277 1.14e-35 143
Msa0104420 AT1G05910.1 32.303 356 215 10 71 416 307 646 4.52e-35 142
Msa0104420 AT5G52882.1 38.115 244 138 8 142 377 500 738 1.53e-34 139
Msa0104420 AT1G03000.1 34.934 229 142 5 153 375 654 881 2.96e-34 139
Msa0104420 AT4G02480.1 37.657 239 136 7 142 371 946 1180 5.73e-34 138
Msa0104420 AT1G80350.1 35.379 277 157 8 114 372 189 461 6.23e-34 135
Msa0104420 AT1G02890.1 37.238 239 137 7 142 371 927 1161 1.51e-33 137
Msa0104420 AT2G34560.1 36.842 228 132 7 153 373 99 321 3.93e-33 131
Msa0104420 AT2G34560.2 36.842 228 132 7 153 373 108 330 5.53e-33 130
Msa0104420 AT3G27120.1 36.864 236 138 7 144 372 389 620 1.01e-32 133
Msa0104420 AT2G45500.4 38.298 235 132 8 157 383 82 311 1.36e-32 129
Msa0104420 AT2G45500.3 38.298 235 132 8 157 383 82 311 1.36e-32 129
Msa0104420 AT2G45500.2 38.298 235 132 8 157 383 215 444 8.82e-32 129
Msa0104420 AT2G45500.1 38.298 235 132 8 157 383 219 448 1.18e-31 128
Msa0104420 AT2G45500.5 38.298 235 132 8 157 383 225 454 1.34e-31 128
Msa0104420 AT1G50140.2 37.004 227 135 5 157 377 691 915 3.34e-31 129
Msa0104420 AT1G50140.5 37.004 227 135 5 157 377 691 915 3.34e-31 129
Msa0104420 AT1G50140.3 37.004 227 135 5 157 377 713 937 3.52e-31 129
Msa0104420 AT1G50140.1 37.004 227 135 5 157 377 713 937 3.52e-31 129
Msa0104420 AT1G50140.4 37.004 227 135 5 157 377 713 937 3.52e-31 129
Msa0104420 AT4G24860.1 35.366 246 147 6 144 381 806 1047 1.13e-30 128
Msa0104420 AT4G24860.4 35.366 246 147 6 144 381 779 1020 1.17e-30 128
Msa0104420 AT4G24860.3 35.366 246 147 6 144 381 804 1045 1.17e-30 128
Msa0104420 AT4G24860.2 35.366 246 147 6 144 381 802 1043 1.21e-30 128
Msa0104420 AT3G19740.1 36.564 227 136 5 157 377 703 927 7.00e-30 125
Msa0104420 AT2G03670.2 31.579 247 161 3 159 397 23 269 2.95e-28 117
Msa0104420 AT2G03670.2 38.816 152 87 2 144 289 272 423 7.99e-19 89.7
Msa0104420 AT1G62130.1 33.878 245 142 7 143 381 738 968 4.44e-27 117
Msa0104420 AT1G45000.2 44.286 140 71 3 156 289 137 275 4.86e-27 112
Msa0104420 AT1G62130.2 33.878 245 142 7 143 381 731 961 5.24e-27 117
Msa0104420 AT4G04180.2 32.927 246 134 9 156 387 312 540 8.88e-27 115
Msa0104420 AT4G04180.1 32.927 246 134 9 156 387 317 545 9.67e-27 115
Msa0104420 AT5G53540.1 32.364 275 162 9 157 414 86 353 1.11e-26 112
Msa0104420 AT4G27680.1 35.586 222 132 6 157 371 83 300 2.64e-25 108
Msa0104420 AT4G04910.1 34.615 208 118 5 180 370 239 445 1.96e-21 99.4
Msa0104420 AT1G02890.2 32.218 239 121 9 142 371 927 1133 1.05e-20 97.4
Msa0104420 AT5G08470.2 34.459 148 89 3 157 299 843 987 5.30e-19 91.7

Find 158 sgRNAs with CRISPR-Local

Find 686 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAAGACCGAATAATTA+TGG 0.162907 1_3:+12324221 Msa0104420:CDS
CTGTACGTCTGTCAGGTTTA+TGG 0.212295 1_3:+12320464 Msa0104420:intron
TGTATTATTGTACTAATTAT+AGG 0.232572 1_3:+12326622 Msa0104420:three_prime_UTR
ACTTCCTTGTTTAGCTCCTT+TGG 0.240049 1_3:-12320567 None:intergenic
CTTCCTTGTTTAGCTCCTTT+GGG 0.240432 1_3:-12320566 None:intergenic
TCTTATCATAAGATGATTAT+AGG 0.256040 1_3:+12326724 Msa0104420:three_prime_UTR
TGCTTTAATATCTACATTAT+CGG 0.257297 1_3:-12323970 None:intergenic
TCTTCTTGTTCCTGTTGTTC+TGG 0.277378 1_3:-12326554 None:intergenic
GAGGAATCTGGAAAACCTTC+TGG 0.290339 1_3:+12318827 Msa0104420:CDS
CTGTTCATGCTCAGGTTTGT+TGG 0.298475 1_3:+12323189 Msa0104420:intron
GTATTATTGTACTAATTATA+GGG 0.309620 1_3:+12326623 Msa0104420:three_prime_UTR
TTGGGTGGGATTGGTTCTTC+AGG 0.312707 1_3:+12320519 Msa0104420:CDS
TTGGAGGCAGGAGAAGAAAT+TGG 0.328754 1_3:+12317384 Msa0104420:intron
TGTACGTCTGTCAGGTTTAT+GGG 0.331741 1_3:+12320465 Msa0104420:intron
GTTGCAGAAGAACTTATCTT+TGG 0.341319 1_3:+12325640 Msa0104420:CDS
CGACCACGTACATCTGGATT+TGG 0.346610 1_3:-12323906 None:intergenic
GATGTGCGCCGTCGGTATTA+AGG 0.351476 1_3:-12325486 None:intergenic
ATGCCCCGTGGATCTGCTTT+AGG 0.353616 1_3:+12325529 Msa0104420:CDS
TTTCAGGGGATTCTTCTGAC+TGG 0.361761 1_3:+12321744 Msa0104420:intron
AGCTCGTCTTGATGTTTGTA+TGG 0.361815 1_3:+12325609 Msa0104420:CDS
ATTCTTCTGACTGGGGCACC+TGG 0.362651 1_3:+12321753 Msa0104420:CDS
TATCTTCCTGATGAGGAATC+TGG 0.373257 1_3:+12318815 Msa0104420:CDS
GCTCTGTACCCATAATTATT+CGG 0.373668 1_3:-12324230 None:intergenic
GCAAAAGACCGAATAATTAT+GGG 0.375666 1_3:+12324222 Msa0104420:CDS
TTCAGGGGATTCTTCTGACT+GGG 0.379915 1_3:+12321745 Msa0104420:intron
GCTGTAGGGAATAATATTAA+TGG 0.382293 1_3:+12323571 Msa0104420:intron
CACGATCATATGCATCTCTA+AGG 0.382357 1_3:-12326213 None:intergenic
ACGTGGTCGGCAAGAAATAT+TGG 0.387425 1_3:+12323920 Msa0104420:CDS
CTGACTGGGGCACCTGGAAC+TGG 0.388772 1_3:+12321759 Msa0104420:CDS
ATGATTGTTGCCTTGTGAAT+TGG 0.395594 1_3:-12325508 None:intergenic
GGCTGCTTCTCAGATATTCC+AGG 0.398346 1_3:-12320065 None:intergenic
GCACCAACTTCTTGTTGAAA+TGG 0.405004 1_3:+12323460 Msa0104420:CDS
CAACTTCTTGTTGAAATGGA+TGG 0.407414 1_3:+12323464 Msa0104420:CDS
ATGCTCAGGTTTGTTGGAGT+TGG 0.412642 1_3:+12323195 Msa0104420:intron
CGTGGTACCCCAGGATTCAA+TGG 0.413046 1_3:+12323999 Msa0104420:CDS
TCTTGCCGACCACGTACATC+TGG 0.413497 1_3:-12323912 None:intergenic
GGGATTGGTTCTTCAGGTGT+TGG 0.413971 1_3:+12320525 Msa0104420:CDS
ATGTGCGCCGTCGGTATTAA+GGG 0.414011 1_3:-12325485 None:intergenic
CCAGCTAAATTTACTCGCCT+TGG 0.415935 1_3:+12321313 Msa0104420:CDS
AAGTTGGTGCAATGTCTTCT+TGG 0.418332 1_3:-12323447 None:intergenic
AGAGCTGGATCAAGAATATC+AGG 0.419594 1_3:-12323608 None:intergenic
GAGTTGAAACAGCGGGCATC+TGG 0.423089 1_3:+12320017 Msa0104420:CDS
CACCTGCCCCATTGAATCCT+GGG 0.423171 1_3:-12324007 None:intergenic
TCGTGCCGGTTCGGAATTTG+AGG 0.426524 1_3:+12322042 Msa0104420:CDS
ATCGGAAGCTTGGGTGGGAT+TGG 0.428528 1_3:+12320510 Msa0104420:CDS
TATTGATGTCTCATCATTTG+AGG 0.429070 1_3:-12325569 None:intergenic
TCACCTGCCCCATTGAATCC+TGG 0.435358 1_3:-12324008 None:intergenic
GCTATTAAAGCTGCGGTTGA+AGG 0.440549 1_3:+12324165 Msa0104420:CDS
GGGACCTTGAAGGCTATTGC+TGG 0.440814 1_3:+12321995 Msa0104420:intron
ACGATTACTTCTCCCGTATC+GGG 0.444184 1_3:+12326520 Msa0104420:CDS
AGGAAAACTTCCAGAACAAC+AGG 0.454950 1_3:+12326544 Msa0104420:CDS
GGTCGGGATAATGTCACAAC+TGG 0.455133 1_3:+12325661 Msa0104420:CDS
CCAAGGCGAGTAAATTTAGC+TGG 0.460716 1_3:-12321313 None:intergenic
GTGGTACCCCAGGATTCAAT+GGG 0.461743 1_3:+12324000 Msa0104420:CDS
AACTTCTTGTTGAAATGGAT+GGG 0.469351 1_3:+12323465 Msa0104420:CDS
GGACCTTTGTCATCGTTAGC+AGG 0.472984 1_3:-12326787 None:intergenic
GACGATTACTTCTCCCGTAT+CGG 0.475761 1_3:+12326519 Msa0104420:CDS
GCTAAATTTACTCGCCTTGG+AGG 0.476125 1_3:+12321316 Msa0104420:CDS
TTACTGAGGCCGATGCGAAT+CGG 0.479188 1_3:+12317416 Msa0104420:CDS
ATTGATGTCTCATCATTTGA+GGG 0.480191 1_3:-12325568 None:intergenic
CGGCTGTAGGTTTATCATGC+AGG 0.484405 1_3:-12323950 None:intergenic
TGATAAAGATATTTGAAGAA+AGG 0.484840 1_3:+12318720 Msa0104420:CDS
TGTGAAAGCTCTTCTGAAGA+AGG 0.486191 1_3:+12326234 Msa0104420:CDS
GCAAGAACTTGAGGAGGTTG+TGG 0.486955 1_3:+12321276 Msa0104420:CDS
CATCTCCTCAAATTCCGAAC+CGG 0.488253 1_3:-12322047 None:intergenic
TACACTAGATCTGGCAAACC+TGG 0.489864 1_3:+12324131 Msa0104420:intron
CAGAAGAACTTATCTTTGGT+CGG 0.491737 1_3:+12325644 Msa0104420:CDS
ATTGATGAAATTGATGCCGT+TGG 0.494452 1_3:+12323395 Msa0104420:CDS
AGAAGAACTTATCTTTGGTC+GGG 0.494681 1_3:+12325645 Msa0104420:CDS
CAAGGAAGTGATGCCAGAAA+AGG 0.496681 1_3:+12320581 Msa0104420:CDS
GGTTTGTTGGAGTTGGTGCT+CGG 0.497437 1_3:+12323202 Msa0104420:intron
AGCAGAAGGGGATCTTGTAT+TGG 0.499724 1_3:+12326577 Msa0104420:CDS
GATAAAGATATTTGAAGAAA+GGG 0.501718 1_3:+12318721 Msa0104420:CDS
CATCCATTTCAACAAGAAGT+TGG 0.504444 1_3:-12323463 None:intergenic
TTCCTTGTTTAGCTCCTTTG+GGG 0.505068 1_3:-12320565 None:intergenic
GAAATTAACAGCTTCTCAGT+TGG 0.510238 1_3:+12324194 Msa0104420:CDS
TACCGAGCTTGCGCAATACA+TGG 0.515301 1_3:+12325708 Msa0104420:CDS
GCTCGTCTTGATGTTTGTAT+GGG 0.515952 1_3:+12325610 Msa0104420:CDS
ACCCCAGGATTCAATGGGGC+AGG 0.516888 1_3:+12324005 Msa0104420:CDS
TTGTTGAGCTTAATAAGCAC+AGG 0.518276 1_3:+12317467 Msa0104420:CDS
CTACCAGGTCTCGTTAGAGC+TGG 0.519457 1_3:-12323623 None:intergenic
CCGTGGATCTGCTTTAGGAA+TGG 0.526051 1_3:+12325534 Msa0104420:CDS
AAGGCTATTGCTGGAGAAGC+CGG 0.527024 1_3:+12322004 Msa0104420:intron
GCAATAGCCCGTGGTACCCC+AGG 0.527714 1_3:+12323990 Msa0104420:CDS
TATTAAAATGAAGAATACAT+AGG 0.530822 1_3:-12326917 None:intergenic
CCTTTGGCAGCTTTCCTCCA+AGG 0.531093 1_3:-12321330 None:intergenic
CATTGAATCCTGGGGTACCA+CGG 0.536347 1_3:-12323998 None:intergenic
GATAAGAATTGCATGGGCTA+AGG 0.537144 1_3:-12326708 None:intergenic
AAGAATTGCATGGGCTAAGG+AGG 0.537451 1_3:-12326705 None:intergenic
TAATAGCAGCAATGTTCACC+AGG 0.538384 1_3:-12324149 None:intergenic
TTTGCTACACAGATATTCAA+AGG 0.539756 1_3:-12326760 None:intergenic
ATTGAATCCTGGGGTACCAC+GGG 0.540112 1_3:-12323997 None:intergenic
ATCTTATGATAAGAATTGCA+TGG 0.542431 1_3:-12326715 None:intergenic
AAATACATCGGAAGCTTGGG+TGG 0.543361 1_3:+12320504 Msa0104420:CDS
TACCATGTATTGCGCAAGCT+CGG 0.544845 1_3:-12325710 None:intergenic
AATATCTTTATCACAGACTC+AGG 0.545857 1_3:-12318710 None:intergenic
CGTCTTGATGTTTGTATGGG+AGG 0.550296 1_3:+12325613 Msa0104420:CDS
CAGGAACAAGAAGAAGCAGA+AGG 0.551151 1_3:+12326563 Msa0104420:CDS
CATTCCTAAAGCAGATCCAC+GGG 0.552648 1_3:-12325533 None:intergenic
GTGGTGTAGTATTCTAATAG+TGG 0.555865 1_3:-12326808 None:intergenic
AAAATATTGCCCTCAGCAAG+TGG 0.557403 1_3:-12326827 None:intergenic
GTTGCAAGAGTTGAAACAGC+GGG 0.557627 1_3:+12320010 Msa0104420:intron
TATTATTGTACTAATTATAG+GGG 0.561588 1_3:+12326624 Msa0104420:three_prime_UTR
TCAGGGGATTCTTCTGACTG+GGG 0.564763 1_3:+12321746 Msa0104420:intron
ATATCTACATTATCGGCTGT+AGG 0.564889 1_3:-12323963 None:intergenic
GGAACAAGAAGAAGCAGAAG+GGG 0.569059 1_3:+12326565 Msa0104420:CDS
AGGAACAAGAAGAAGCAGAA+GGG 0.570827 1_3:+12326564 Msa0104420:CDS
TGTACAGTATAAATTCGTAC+AGG 0.571250 1_3:+12326653 Msa0104420:three_prime_UTR
GAATACTACACCACTTGCTG+AGG 0.572514 1_3:+12326817 Msa0104420:three_prime_UTR
CTGTTTCCTAGTTGATCCAA+CGG 0.575192 1_3:-12323411 None:intergenic
GGATGGGTTTGAGCAGAATG+AGG 0.575670 1_3:+12323481 Msa0104420:CDS
ACCAAGGTGGGAATTCCAGA+AGG 0.577989 1_3:-12318842 None:intergenic
TCTTATGATAAGAATTGCAT+GGG 0.579510 1_3:-12326714 None:intergenic
TTACTTCTCCCGTATCGGGA+AGG 0.581959 1_3:+12326524 Msa0104420:CDS
AAAACATGAATTACCAAGGT+GGG 0.583480 1_3:-12318854 None:intergenic
TGAGGCCGATGCGAATCGGT+TGG 0.585106 1_3:+12317420 Msa0104420:CDS
TGAGAAGGCATTACATACAT+TGG 0.587187 1_3:+12326451 Msa0104420:CDS
ACCTTCTGGAATTCCCACCT+TGG 0.590390 1_3:+12318841 Msa0104420:CDS
GACAGAGCTGTGGACAGTAG+AGG 0.595203 1_3:+12318743 Msa0104420:CDS
CCTTGGAGGAAAGCTGCCAA+AGG 0.602817 1_3:+12321330 Msa0104420:CDS
TGCAGAATATCTTCCTGATG+AGG 0.603402 1_3:+12318808 Msa0104420:CDS
CCATTCCTAAAGCAGATCCA+CGG 0.603684 1_3:-12325534 None:intergenic
AGCATCCAACCGATTCGCAT+CGG 0.603784 1_3:-12317425 None:intergenic
TATTAAGGGCAACAATTGCA+TGG 0.607650 1_3:-12325471 None:intergenic
AGAATATCTTCGAGCACTAG+TGG 0.608927 1_3:+12318772 Msa0104420:CDS
GTGAATTGGATGTGCGCCGT+CGG 0.614636 1_3:-12325494 None:intergenic
GGTGCAATGTCTTCTTGGTG+TGG 0.614778 1_3:-12323442 None:intergenic
TGATGCAAAGCAAGAACTTG+AGG 0.615992 1_3:+12321267 Msa0104420:CDS
GCTGCTTCTCAGATATTCCA+GGG 0.618273 1_3:-12320064 None:intergenic
AAGTTCATCTTATACCCCAA+AGG 0.619333 1_3:+12320551 Msa0104420:CDS
ATTGTTGCCCTTAATACCGA+CGG 0.619999 1_3:+12325478 Msa0104420:CDS
GATCCAGCTCTAACGAGACC+TGG 0.626768 1_3:+12323620 Msa0104420:CDS
CATTGCTGCTATTAAAGCTG+CGG 0.632069 1_3:+12324158 Msa0104420:CDS
TACCCCAAAGGAGCTAAACA+AGG 0.634360 1_3:+12320563 Msa0104420:CDS
ACATGTCGATCAAATCTACC+AGG 0.635247 1_3:-12323638 None:intergenic
CGGCGCACATCCAATTCACA+AGG 0.635397 1_3:+12325498 Msa0104420:CDS
AATACATCGGAAGCTTGGGT+GGG 0.641750 1_3:+12320505 Msa0104420:CDS
TGAAGAAAGGGACAGAGCTG+TGG 0.642216 1_3:+12318733 Msa0104420:CDS
TCATCAATGAAAATAATGCA+AGG 0.645297 1_3:-12323380 None:intergenic
TGGATCAACTAGGAAACAGT+GGG 0.648027 1_3:+12323415 Msa0104420:CDS
AGAATTGCATGGGCTAAGGA+GGG 0.648945 1_3:-12326704 None:intergenic
AATACTACACCACTTGCTGA+GGG 0.653077 1_3:+12326818 Msa0104420:three_prime_UTR
ACCTGCCCCATTGAATCCTG+GGG 0.654030 1_3:-12324006 None:intergenic
CAAATCCAGATGTACGTGGT+CGG 0.656095 1_3:+12323907 Msa0104420:CDS
GATATTAAAGCAATAGCCCG+TGG 0.657393 1_3:+12323981 Msa0104420:CDS
AATCCTGCTAACGATGACAA+AGG 0.657812 1_3:+12326784 Msa0104420:three_prime_UTR
TTGGATCAACTAGGAAACAG+TGG 0.663653 1_3:+12323414 Msa0104420:CDS
TGCAAAGCAAGAACTTGAGG+AGG 0.665232 1_3:+12321270 Msa0104420:CDS
TCAACTAGGAAACAGTGGGA+GGG 0.665391 1_3:+12323419 Msa0104420:CDS
ATCAACTAGGAAACAGTGGG+AGG 0.670980 1_3:+12323418 Msa0104420:CDS
TTGATGCCGTTGGATCAACT+AGG 0.681667 1_3:+12323405 Msa0104420:CDS
CTTACTGCTTATCATGAGAG+CGG 0.684706 1_3:+12325448 Msa0104420:CDS
ATTGGCGAAGTTGATTACTG+AGG 0.692137 1_3:+12317402 Msa0104420:CDS
GTACCAAATCCAGATGTACG+TGG 0.724171 1_3:+12323903 Msa0104420:CDS
AGTTGCAAGAGTTGAAACAG+CGG 0.728453 1_3:+12320009 Msa0104420:intron
AAGGCAACAATCATGCCCCG+TGG 0.731484 1_3:+12325517 Msa0104420:CDS
ATTCCTAAAGCAGATCCACG+GGG 0.770989 1_3:-12325532 None:intergenic
TGGTACCCCAGGATTCAATG+GGG 0.791131 1_3:+12324001 Msa0104420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATACTTATAAGT+TGG - chr1_3:12316391-12316410 None:intergenic 10.0%
!!! AATAATTTTTCAGAATTTAT+TGG - chr1_3:12316659-12316678 None:intergenic 10.0%
!!! AATAAATTCTGAAAAATTAT+TGG + chr1_3:12316658-12316677 Msa0104420:intron 10.0%
!! TTATCAAAAAAATTTGTATA+AGG - chr1_3:12319739-12319758 None:intergenic 10.0%
!! TTATTTGGATAATAAAATAA+GGG - chr1_3:12320967-12320986 None:intergenic 10.0%
!! AATTATGATTATATAATACA+TGG - chr1_3:12321181-12321200 None:intergenic 10.0%
!!! ATTTTTAGTATTTTAATGTT+AGG - chr1_3:12324545-12324564 None:intergenic 10.0%
!! ACATTATATAAAAAAAAGAT+TGG - chr1_3:12324633-12324652 None:intergenic 10.0%
!!! TATATTTTTTGTTATATTGT+TGG - chr1_3:12324822-12324841 None:intergenic 10.0%
!!! CAAATATTTTATCAATTTTT+TGG + chr1_3:12325312-12325331 Msa0104420:intron 10.0%
!! AATTTAACAGAAAATGTTAA+CGG + chr1_3:12315627-12315646 Msa0104420:intron 15.0%
!!! TATTTTAATTTTCGATGAAT+TGG - chr1_3:12315712-12315731 None:intergenic 15.0%
!! TTAAGGAATCATTAAATTAT+AGG + chr1_3:12315874-12315893 Msa0104420:intron 15.0%
!! AAATTATAGGAATAATTGTA+TGG + chr1_3:12315887-12315906 Msa0104420:intron 15.0%
!! AATAAATTATGTTTACATGT+GGG - chr1_3:12316180-12316199 None:intergenic 15.0%
!! AAATAAATTATGTTTACATG+TGG - chr1_3:12316181-12316200 None:intergenic 15.0%
!! AAAATAATACGAATTTGAAA+GGG + chr1_3:12316361-12316380 Msa0104420:intron 15.0%
!!! TATTAATCATAAGTTTGTTA+AGG + chr1_3:12317723-12317742 Msa0104420:intron 15.0%
!!! TTGTTGTTATAAATGTTTTT+AGG + chr1_3:12318103-12318122 Msa0104420:intron 15.0%
!! CATGTAAAATAGTTTATTAA+AGG - chr1_3:12318526-12318545 None:intergenic 15.0%
!!! ATGAACATAATAGTTATTTT+CGG + chr1_3:12318614-12318633 Msa0104420:intron 15.0%
!! AAAAAATTAGAAAAAAGTCA+AGG - chr1_3:12319221-12319240 None:intergenic 15.0%
!! AATAATCAAACAATAGAATT+GGG - chr1_3:12320241-12320260 None:intergenic 15.0%
!!! ATATAGATTATTCTTTCTTT+TGG + chr1_3:12320668-12320687 Msa0104420:intron 15.0%
!! AAATGTAGTAAGTATTATAT+TGG - chr1_3:12320904-12320923 None:intergenic 15.0%
!! CTTATTTGGATAATAAAATA+AGG - chr1_3:12320968-12320987 None:intergenic 15.0%
!!! AATAATTCATTTGATAGTAT+TGG - chr1_3:12321088-12321107 None:intergenic 15.0%
!! ATAATAATAATGAAGTTCAA+TGG - chr1_3:12321953-12321972 None:intergenic 15.0%
!! CTAAAAGAAATAAGAAATTA+TGG - chr1_3:12322990-12323009 None:intergenic 15.0%
!! AAGGAAAATTAAAAAAACAT+AGG + chr1_3:12323773-12323792 Msa0104420:intron 15.0%
!! TATATTATATACACATTAAC+CGG - chr1_3:12323843-12323862 None:intergenic 15.0%
!! TAATGTGTATATAATATAGA+TGG + chr1_3:12323845-12323864 Msa0104420:intron 15.0%
!! TAACATTTGAAAATTATGAA+CGG + chr1_3:12324685-12324704 Msa0104420:intron 15.0%
!! TTATTTGTATTGAAAATTGA+GGG + chr1_3:12325060-12325079 Msa0104420:intron 15.0%
!! TATAGATGAAAATAGAAAAT+TGG + chr1_3:12325145-12325164 Msa0104420:intron 15.0%
!! AATAAAATAGACACAAAAAA+TGG - chr1_3:12325338-12325357 None:intergenic 15.0%
!!! TCTATTTTATTTAGCATAAT+TGG + chr1_3:12325347-12325366 Msa0104420:intron 15.0%
!! TTAACAATTGAAATTATGTT+TGG + chr1_3:12326105-12326124 Msa0104420:intron 15.0%
!!! CAATTTTTTCAATGAATTTA+TGG - chr1_3:12326341-12326360 None:intergenic 15.0%
!! CATAAATTCATTGAAAAAAT+TGG + chr1_3:12326339-12326358 Msa0104420:intron 15.0%
!! TAAAAAAATGACAAAAAATG+TGG - chr1_3:12326428-12326447 None:intergenic 15.0%
!! TGTATTATTGTACTAATTAT+AGG + chr1_3:12326622-12326641 Msa0104420:three_prime_UTR 15.0%
!! GTATTATTGTACTAATTATA+GGG + chr1_3:12326623-12326642 Msa0104420:three_prime_UTR 15.0%
!! TATTATTGTACTAATTATAG+GGG + chr1_3:12326624-12326643 Msa0104420:three_prime_UTR 15.0%
!! TATTAAAATGAAGAATACAT+AGG - chr1_3:12326920-12326939 None:intergenic 15.0%
!! TTGAGAAGAAAAAAAAATCA+AGG - chr1_3:12315939-12315958 None:intergenic 20.0%
!! AATAATAAATGCAATTTGTG+TGG - chr1_3:12315992-12316011 None:intergenic 20.0%
!!! TTCTAAAACATCAAAAGTTT+TGG + chr1_3:12316076-12316095 Msa0104420:intron 20.0%
!! CAAAATAATACGAATTTGAA+AGG + chr1_3:12316360-12316379 Msa0104420:intron 20.0%
!! AAATAATACGAATTTGAAAG+GGG + chr1_3:12316362-12316381 Msa0104420:intron 20.0%
!! ATTCTATCGACAATTATATA+AGG - chr1_3:12316457-12316476 None:intergenic 20.0%
!!! TTAATTGAAATTTTTCACTG+CGG - chr1_3:12316520-12316539 None:intergenic 20.0%
!!! ATTTTTCAGCTTATAAATAG+TGG - chr1_3:12316586-12316605 None:intergenic 20.0%
!! ATTTCAGTTAACCAAATATA+TGG - chr1_3:12316715-12316734 None:intergenic 20.0%
!! ACAATATCAATAACAATGAT+AGG - chr1_3:12316779-12316798 None:intergenic 20.0%
!!! TTTTGAATGAGTTTTGTAAT+CGG - chr1_3:12317192-12317211 None:intergenic 20.0%
!!! TTTACATTTTGTATTGTGTT+TGG + chr1_3:12317566-12317585 Msa0104420:intron 20.0%
!!! TTACATTTTGTATTGTGTTT+GGG + chr1_3:12317567-12317586 Msa0104420:intron 20.0%
!! AGAACACTTAATTTACTATT+TGG + chr1_3:12318021-12318040 Msa0104420:intron 20.0%
!! GAACACTTAATTTACTATTT+GGG + chr1_3:12318022-12318041 Msa0104420:intron 20.0%
!!! AATGTATTAGCTATTTCTAT+AGG + chr1_3:12318314-12318333 Msa0104420:intron 20.0%
!! AATGAAAAAACATATGATAG+TGG - chr1_3:12318677-12318696 None:intergenic 20.0%
!! TGATAAAGATATTTGAAGAA+AGG + chr1_3:12318720-12318739 Msa0104420:CDS 20.0%
!! GATAAAGATATTTGAAGAAA+GGG + chr1_3:12318721-12318740 Msa0104420:CDS 20.0%
!! TTAAAGCAATTTGATCAAAA+TGG - chr1_3:12318999-12319018 None:intergenic 20.0%
!! CGAAAAATTCATTTAAACAA+AGG + chr1_3:12319152-12319171 Msa0104420:intron 20.0%
!!! AAAATTATCATCTAAGATGA+CGG + chr1_3:12319348-12319367 Msa0104420:intron 20.0%
!!! ATTCAAACATGATTTAAGTT+GGG + chr1_3:12319386-12319405 Msa0104420:intron 20.0%
!!! AGCAAATCTTTTTTCTTATT+AGG - chr1_3:12319710-12319729 None:intergenic 20.0%
!! TAATAAGAAAAAAGATTTGC+TGG + chr1_3:12319709-12319728 Msa0104420:intron 20.0%
!! ATTTCAGTTCATAATTTACT+TGG + chr1_3:12319948-12319967 Msa0104420:intron 20.0%
!! GAATAATCAAACAATAGAAT+TGG - chr1_3:12320242-12320261 None:intergenic 20.0%
!! TATAAGTAAGAGTAGATTAA+CGG - chr1_3:12320612-12320631 None:intergenic 20.0%
!! TCTACTACAATATTACAATA+TGG + chr1_3:12320644-12320663 Msa0104420:intron 20.0%
!! AATACATGATTGAATAGTTT+AGG + chr1_3:12320693-12320712 Msa0104420:intron 20.0%
!!! ACATGTGAACATTTATTTTA+TGG + chr1_3:12320772-12320791 Msa0104420:intron 20.0%
!!! CATGTGAACATTTATTTTAT+GGG + chr1_3:12320773-12320792 Msa0104420:intron 20.0%
!!! TAAATTTAGCTGGATTTTTT+AGG - chr1_3:12321306-12321325 None:intergenic 20.0%
!!! AATATTTTGTTTATGAAGTC+AGG + chr1_3:12321706-12321725 Msa0104420:intron 20.0%
!! TCCAAAAATTATTCAAATAG+AGG - chr1_3:12322263-12322282 None:intergenic 20.0%
!! TTAAGGAAAGTTTAATATGT+TGG + chr1_3:12323139-12323158 Msa0104420:intron 20.0%
!!! TTTTCTTCTTTATCTTTTGT+AGG + chr1_3:12323355-12323374 Msa0104420:intron 20.0%
!!! ATTTATCATTTTTATGCTGT+AGG + chr1_3:12323556-12323575 Msa0104420:intron 20.0%
!!! TTTATCATTTTTATGCTGTA+GGG + chr1_3:12323557-12323576 Msa0104420:intron 20.0%
!! TCTTCGTAAATTCATTTATA+GGG - chr1_3:12323686-12323705 None:intergenic 20.0%
!! ATATTATATACACATTAACC+GGG - chr1_3:12323842-12323861 None:intergenic 20.0%
!! TGCTTTAATATCTACATTAT+CGG - chr1_3:12323973-12323992 None:intergenic 20.0%
!!! GTTCATAATTTTCAAATGTT+AGG - chr1_3:12324686-12324705 None:intergenic 20.0%
!! ATCATTGAAATAGATAATCA+TGG - chr1_3:12324798-12324817 None:intergenic 20.0%
!! ATTGTAGAAAAAGTTGTTTA+AGG + chr1_3:12324881-12324900 Msa0104420:intron 20.0%
!! TTGTAGAAAAAGTTGTTTAA+GGG + chr1_3:12324882-12324901 Msa0104420:intron 20.0%
!!! TTACACTTTTTAAGTGATAA+AGG + chr1_3:12324954-12324973 Msa0104420:intron 20.0%
!! GTTATTTGTATTGAAAATTG+AGG + chr1_3:12325059-12325078 Msa0104420:intron 20.0%
!! TCTTATCATAAGATGATTAT+AGG + chr1_3:12326724-12326743 Msa0104420:three_prime_UTR 20.0%
!!! TTTTTAGACGGATATTTTAT+TGG + chr1_3:12326869-12326888 Msa0104420:three_prime_UTR 20.0%
! TAAAGAATGTCTTTAGACAT+TGG + chr1_3:12315772-12315791 Msa0104420:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr1_3:12315836-12315855 None:intergenic 25.0%
!! TCCTTTTCTTTTGATGTTTT+AGG + chr1_3:12315837-12315856 Msa0104420:intron 25.0%
! ACCTAAAACATCAAAAGAAA+AGG - chr1_3:12315841-12315860 None:intergenic 25.0%
! AGGTGATTACACAAATATTA+AGG + chr1_3:12315857-12315876 Msa0104420:intron 25.0%
! AAAAATCAAGGAGTAAGTAA+GGG - chr1_3:12315927-12315946 None:intergenic 25.0%
! AAAAAATCAAGGAGTAAGTA+AGG - chr1_3:12315928-12315947 None:intergenic 25.0%
!! GAAAAACACACTTTGAAAAT+TGG - chr1_3:12316022-12316041 None:intergenic 25.0%
!!! TTTTTCAACAAGGGTAAAAT+TGG + chr1_3:12316036-12316055 Msa0104420:intron 25.0%
! AAGCATCAAAAGAAAAGAAA+TGG + chr1_3:12316117-12316136 Msa0104420:intron 25.0%
! ATCAAAAGAAAAGAAATGGA+GGG + chr1_3:12316121-12316140 Msa0104420:intron 25.0%
! ACTAATAAGGACTCTTTAAA+TGG + chr1_3:12316152-12316171 Msa0104420:intron 25.0%
! CATCATTAGTGCATTATTAT+TGG - chr1_3:12316239-12316258 None:intergenic 25.0%
! ATTGTCGATAGAATAAAGAT+TGG + chr1_3:12316463-12316482 Msa0104420:intron 25.0%
! AATCACACAGACTATATATT+TGG - chr1_3:12316543-12316562 None:intergenic 25.0%
! TTAACTAAGTGGAAAAATAG+TGG - chr1_3:12316636-12316655 None:intergenic 25.0%
!! GAATTTATTGGTTAACTAAG+TGG - chr1_3:12316647-12316666 None:intergenic 25.0%
!!! GAAATTTTTCAACAGTACAA+AGG + chr1_3:12316730-12316749 Msa0104420:intron 25.0%
! TATCAATAACAATGATAGGT+AGG - chr1_3:12316775-12316794 None:intergenic 25.0%
!! TATGTACCTATTTTCTTGAA+TGG + chr1_3:12316809-12316828 Msa0104420:intron 25.0%
!! TAAATTAGAGCATCTCTAAT+GGG - chr1_3:12316873-12316892 None:intergenic 25.0%
!! ATAAATTAGAGCATCTCTAA+TGG - chr1_3:12316874-12316893 None:intergenic 25.0%
! TAGAGATGCTCTAATTTATA+TGG + chr1_3:12316875-12316894 Msa0104420:intron 25.0%
! AGAGATGCTCTAATTTATAT+GGG + chr1_3:12316876-12316895 Msa0104420:intron 25.0%
! ATGGTTGAGATTAAAATGAT+GGG - chr1_3:12317114-12317133 None:intergenic 25.0%
!!! TTTGAATGAGTTTTGTAATC+GGG - chr1_3:12317191-12317210 None:intergenic 25.0%
! CAAAACTCATTCAAAATCAA+CGG + chr1_3:12317196-12317215 Msa0104420:intron 25.0%
! TAATGTAGGAATAAGTTAGA+AGG + chr1_3:12317540-12317559 Msa0104420:intron 25.0%
! GCAAGACAAAAAAAAAAGAT+TGG + chr1_3:12317942-12317961 Msa0104420:intron 25.0%
! AGACAAAAAAAAAAGATTGG+AGG + chr1_3:12317945-12317964 Msa0104420:intron 25.0%
!! TGCTTGGGAAAATTTAAAAT+TGG + chr1_3:12317981-12318000 Msa0104420:intron 25.0%
! TAGCTTCTGTTATGAAAATT+AGG + chr1_3:12318133-12318152 Msa0104420:intron 25.0%
! AGCTTCTGTTATGAAAATTA+GGG + chr1_3:12318134-12318153 Msa0104420:intron 25.0%
! TAGTTTATTAAAGGTCTGTT+AGG - chr1_3:12318517-12318536 None:intergenic 25.0%
! AAGAAAAACATGAATTACCA+AGG - chr1_3:12318861-12318880 None:intergenic 25.0%
! TTAACAAATGTCTGTCTATT+AGG + chr1_3:12319015-12319034 Msa0104420:intron 25.0%
! TAAGGTAAAAACTAGAGTAA+GGG - chr1_3:12319064-12319083 None:intergenic 25.0%
! TTAAGGTAAAAACTAGAGTA+AGG - chr1_3:12319065-12319084 None:intergenic 25.0%
!!! TTTTGGAATAGTTGTTCATT+GGG + chr1_3:12319096-12319115 Msa0104420:intron 25.0%
! TTCATTTAAACAAAGGAATC+TGG + chr1_3:12319159-12319178 Msa0104420:intron 25.0%
! TCATTTAAACAAAGGAATCT+GGG + chr1_3:12319160-12319179 Msa0104420:intron 25.0%
!!! CTAATTTTTTAGCCGAATTT+CGG + chr1_3:12319231-12319250 Msa0104420:intron 25.0%
!! AGTAAAAGAAAGACATTTTG+AGG - chr1_3:12319265-12319284 None:intergenic 25.0%
! CATTCAAACATGATTTAAGT+TGG + chr1_3:12319385-12319404 Msa0104420:intron 25.0%
!!! TTCAAACATGATTTAAGTTG+GGG + chr1_3:12319387-12319406 Msa0104420:intron 25.0%
!!! AGCTCAATTTTAGTAAAATG+AGG + chr1_3:12319559-12319578 Msa0104420:intron 25.0%
! TCAATGATAGACATACAATA+GGG + chr1_3:12319590-12319609 Msa0104420:intron 25.0%
! AAGAAAGTTCATGTTAACAA+AGG - chr1_3:12319900-12319919 None:intergenic 25.0%
! ATAAGTAAGAGTAGATTAAC+GGG - chr1_3:12320611-12320630 None:intergenic 25.0%
! AAAATAAGGGAAATGTTAAC+CGG - chr1_3:12320954-12320973 None:intergenic 25.0%
! ATATACTTCAAGAACTAATG+GGG - chr1_3:12321065-12321084 None:intergenic 25.0%
! GATATACTTCAAGAACTAAT+GGG - chr1_3:12321066-12321085 None:intergenic 25.0%
!! AAAGTTTTTACATTCTGCAA+GGG - chr1_3:12321226-12321245 None:intergenic 25.0%
!! AAAAGTTTTTACATTCTGCA+AGG - chr1_3:12321227-12321246 None:intergenic 25.0%
!! GCAGAATGTAAAAACTTTTA+AGG + chr1_3:12321228-12321247 Msa0104420:intron 25.0%
!!! AAAACTTTTAAGGATGTGAA+AGG + chr1_3:12321238-12321257 Msa0104420:CDS 25.0%
!! CAATAACTTTTATAGACCTT+TGG - chr1_3:12321349-12321368 None:intergenic 25.0%
! CAAAGGTCTATAAAAGTTAT+TGG + chr1_3:12321347-12321366 Msa0104420:intron 25.0%
!! TTTTATCTATGCACGTATAA+AGG - chr1_3:12321644-12321663 None:intergenic 25.0%
!! ATTCTATAGTCCTATACTTT+TGG + chr1_3:12321810-12321829 Msa0104420:intron 25.0%
!! TTCTATAGTCCTATACTTTT+GGG + chr1_3:12321811-12321830 Msa0104420:intron 25.0%
!! GCCTCTATTTGAATAATTTT+TGG + chr1_3:12322259-12322278 Msa0104420:intron 25.0%
! TTCACAAACTTGTAGTTATT+TGG - chr1_3:12322333-12322352 None:intergenic 25.0%
! AATTTAACAAGCAAAAGTCA+AGG + chr1_3:12322406-12322425 Msa0104420:intron 25.0%
! AAAAAAAAACACCCTTAATG+CGG + chr1_3:12322585-12322604 Msa0104420:intron 25.0%
! CAGGGAAAAAAATAAAAACA+AGG + chr1_3:12322631-12322650 Msa0104420:intron 25.0%
!! TCTATTTTACGGGTATTTTT+GGG + chr1_3:12322860-12322879 Msa0104420:intron 25.0%
! ATTGTAATGTTCAAATTGTC+TGG - chr1_3:12322936-12322955 None:intergenic 25.0%
!!! TCTTATTTCTTTTAGATCTG+TGG + chr1_3:12322995-12323014 Msa0104420:intron 25.0%
! TCATCAATGAAAATAATGCA+AGG - chr1_3:12323383-12323402 None:intergenic 25.0%
! CTTCGTAAATTCATTTATAG+GGG - chr1_3:12323685-12323704 None:intergenic 25.0%
! CTCTTCGTAAATTCATTTAT+AGG - chr1_3:12323687-12323706 None:intergenic 25.0%
!!! AATTTGTTAATTCTTGCGAT+AGG - chr1_3:12323741-12323760 None:intergenic 25.0%
! ACAAATTAAACAAGAGACAA+AGG + chr1_3:12323754-12323773 Msa0104420:intron 25.0%
! ACTATTTCATTGACAGTATA+TGG - chr1_3:12324599-12324618 None:intergenic 25.0%
!! ATAGATAATCATGGTTAGTT+TGG - chr1_3:12324789-12324808 None:intergenic 25.0%
! TCTACAATAAAGATTGTTGT+TGG - chr1_3:12324869-12324888 None:intergenic 25.0%
!! AAGTTGTTTAAGGGTATAAT+TGG + chr1_3:12324891-12324910 Msa0104420:intron 25.0%
!! AGTTGTTTAAGGGTATAATT+GGG + chr1_3:12324892-12324911 Msa0104420:intron 25.0%
!!! TTGAAAATTGAGGGTATTTT+TGG + chr1_3:12325069-12325088 Msa0104420:intron 25.0%
!! TTAGAAATTACTCTAGGAAA+TGG - chr1_3:12325273-12325292 None:intergenic 25.0%
! ATGCTCAGTTATGTTATTAA+TGG + chr1_3:12325410-12325429 Msa0104420:intron 25.0%
!!! GTATTTTAACTCTCTTCAAA+AGG + chr1_3:12325961-12325980 Msa0104420:intron 25.0%
!!! TTATTTGATTTGCTCTTCTA+AGG + chr1_3:12326129-12326148 Msa0104420:intron 25.0%
! ATCAAACATTGCATAATTCA+GGG - chr1_3:12326369-12326388 None:intergenic 25.0%
! TATCAAACATTGCATAATTC+AGG - chr1_3:12326370-12326389 None:intergenic 25.0%
! TCTTATGATAAGAATTGCAT+GGG - chr1_3:12326717-12326736 None:intergenic 25.0%
! ATCTTATGATAAGAATTGCA+TGG - chr1_3:12326718-12326737 None:intergenic 25.0%
!!! AGAACTGTGTAATTTTTAGA+CGG + chr1_3:12326857-12326876 Msa0104420:three_prime_UTR 25.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr1_3:12315832-12315851 None:intergenic 30.0%
GTGGTGAGTTTCAATAATTA+AGG - chr1_3:12315973-12315992 None:intergenic 30.0%
!! TCAAAGTGTGTTTTTCAACA+AGG + chr1_3:12316026-12316045 Msa0104420:intron 30.0%
!! CAAAGTGTGTTTTTCAACAA+GGG + chr1_3:12316027-12316046 Msa0104420:intron 30.0%
CATCAAAAGAAAAGAAATGG+AGG + chr1_3:12316120-12316139 Msa0104420:intron 30.0%
TAATAACTCTCCATTGAAGT+TGG - chr1_3:12316265-12316284 None:intergenic 30.0%
ATGCTCTAATTTATATGGGA+AGG + chr1_3:12316880-12316899 Msa0104420:intron 30.0%
AAGAAGAGAAGAAAGAGAAA+GGG - chr1_3:12317015-12317034 None:intergenic 30.0%
AAAGAAGAGAAGAAAGAGAA+AGG - chr1_3:12317016-12317035 None:intergenic 30.0%
! GAGAAAGTGATACATTTTGT+GGG - chr1_3:12317070-12317089 None:intergenic 30.0%
GATGGTTGAGATTAAAATGA+TGG - chr1_3:12317115-12317134 None:intergenic 30.0%
!! AGTAAAGTGGATTTTTGTGA+AGG - chr1_3:12317145-12317164 None:intergenic 30.0%
TTCACAAAAATCCACTTTAC+TGG + chr1_3:12317144-12317163 Msa0104420:intron 30.0%
TTGTATTGTGTTTGGGAAAT+TGG + chr1_3:12317574-12317593 Msa0104420:intron 30.0%
TGTATTGTGTTTGGGAAATT+GGG + chr1_3:12317575-12317594 Msa0104420:intron 30.0%
!! TAGTTTGGTTTGAAGATTGT+AGG + chr1_3:12317601-12317620 Msa0104420:intron 30.0%
TCGAGTGATTAAAGAACTTT+AGG + chr1_3:12317647-12317666 Msa0104420:intron 30.0%
CGAGTGATTAAAGAACTTTA+GGG + chr1_3:12317648-12317667 Msa0104420:intron 30.0%
AAAATAAGCTCAATCCAAAC+GGG - chr1_3:12317850-12317869 None:intergenic 30.0%
CAAAATAAGCTCAATCCAAA+CGG - chr1_3:12317849-12317868 None:intergenic 30.0%
CAAAATAAGCTCAATCCAAA+CGG + chr1_3:12317849-12317868 Msa0104420:intron 30.0%
AAAATAAGCTCAATCCAAAC+GGG + chr1_3:12317850-12317869 Msa0104420:intron 30.0%
CCAAAACAAATTCTCTCAAA+CGG - chr1_3:12317894-12317913 None:intergenic 30.0%
!!! TTTTTTTTGTCTTGCCTTAG+TGG - chr1_3:12317937-12317956 None:intergenic 30.0%
AGCAGTACTATACTAATTCT+AGG - chr1_3:12318054-12318073 None:intergenic 30.0%
!! GGTTCTAAGATTAAGAAAAG+AGG + chr1_3:12318155-12318174 Msa0104420:intron 30.0%
ATAAGTTATTCACCCAAACA+GGG - chr1_3:12318255-12318274 None:intergenic 30.0%
AATAAGTTATTCACCCAAAC+AGG - chr1_3:12318256-12318275 None:intergenic 30.0%
GAACTTAAGAAAACAGCTTA+TGG - chr1_3:12318445-12318464 None:intergenic 30.0%
!!! TTTTCTAAGATAGTGACACA+TGG - chr1_3:12318561-12318580 None:intergenic 30.0%
!! ACATAATAGTTATTTTCGGC+TGG + chr1_3:12318618-12318637 Msa0104420:intron 30.0%
!! CATAATAGTTATTTTCGGCT+GGG + chr1_3:12318619-12318638 Msa0104420:intron 30.0%
AATATCTTTATCACAGACTC+AGG - chr1_3:12318713-12318732 None:intergenic 30.0%
AAAACATGAATTACCAAGGT+GGG - chr1_3:12318857-12318876 None:intergenic 30.0%
AAAAACATGAATTACCAAGG+TGG - chr1_3:12318858-12318877 None:intergenic 30.0%
! TTTTTACCTTAAGCTGCTTA+TGG + chr1_3:12319073-12319092 Msa0104420:intron 30.0%
!!! GTTTTGGAATAGTTGTTCAT+TGG + chr1_3:12319095-12319114 Msa0104420:intron 30.0%
TTCAGCCAAAATTCTGTAAA+AGG + chr1_3:12319187-12319206 Msa0104420:intron 30.0%
TCAGCCAAAATTCTGTAAAA+GGG + chr1_3:12319188-12319207 Msa0104420:intron 30.0%
TTAGAAAAAAGTCAAGGATC+AGG - chr1_3:12319215-12319234 None:intergenic 30.0%
!! AAAAGAAAGACATTTTGAGG+CGG - chr1_3:12319262-12319281 None:intergenic 30.0%
AACACAACCATAATGCTAAT+AGG + chr1_3:12319316-12319335 Msa0104420:intron 30.0%
TGTGAAACCTATTAGCATTA+TGG - chr1_3:12319326-12319345 None:intergenic 30.0%
!! TCAAACATGATTTAAGTTGG+GGG + chr1_3:12319388-12319407 Msa0104420:intron 30.0%
! AAACAGCATTACAACTTTTG+TGG - chr1_3:12319500-12319519 None:intergenic 30.0%
ACAAAAGTTGTAATGCTGTT+TGG + chr1_3:12319499-12319518 Msa0104420:intron 30.0%
!!! TAAGCTCTTGTTGGTTTTTA+GGG - chr1_3:12319539-12319558 None:intergenic 30.0%
!!! TTAAGCTCTTGTTGGTTTTT+AGG - chr1_3:12319540-12319559 None:intergenic 30.0%
GTCAATGATAGACATACAAT+AGG + chr1_3:12319589-12319608 Msa0104420:intron 30.0%
! CCACTCAAAGCATTAAAAAA+AGG - chr1_3:12320127-12320146 None:intergenic 30.0%
!!! CCTTTTTTTAATGCTTTGAG+TGG + chr1_3:12320124-12320143 Msa0104420:intron 30.0%
TGAGACACACATATAAGTAT+AGG - chr1_3:12320154-12320173 None:intergenic 30.0%
!!! ATGAAGCTGCTTCATTTTTT+AGG + chr1_3:12320272-12320291 Msa0104420:intron 30.0%
TTGAGAAAAAGAGAGAGATA+GGG - chr1_3:12320400-12320419 None:intergenic 30.0%
ATTGAGAAAAAGAGAGAGAT+AGG - chr1_3:12320401-12320420 None:intergenic 30.0%
GAATACAAGTATGCATCAAA+GGG - chr1_3:12320441-12320460 None:intergenic 30.0%
TGTGTATTAGCAAGAAATCT+GGG + chr1_3:12320716-12320735 Msa0104420:intron 30.0%
TATACTTCAAGAACTAATGG+GGG - chr1_3:12321064-12321083 None:intergenic 30.0%
GGATATACTTCAAGAACTAA+TGG - chr1_3:12321067-12321086 None:intergenic 30.0%
AGCTTCCATATGACAAATAA+GGG - chr1_3:12321121-12321140 None:intergenic 30.0%
CTCTTGCATATACGATATAT+CGG + chr1_3:12321139-12321158 Msa0104420:intron 30.0%
! AAGTTTTTACATTCTGCAAG+GGG - chr1_3:12321225-12321244 None:intergenic 30.0%
CTAACAAACATGTAAAGCTT+TGG + chr1_3:12321534-12321553 Msa0104420:intron 30.0%
! TCATGTTTGTTAGTGCAATT+TGG + chr1_3:12321679-12321698 Msa0104420:intron 30.0%
CTATAGAATTTAACTGACCT+TGG - chr1_3:12321799-12321818 None:intergenic 30.0%
! CAAAAACTTCCCAAAAGTAT+AGG - chr1_3:12321823-12321842 None:intergenic 30.0%
!! CTATACTTTTGGGAAGTTTT+TGG + chr1_3:12321821-12321840 Msa0104420:intron 30.0%
!! TTTTTGGAAGGACTTAAATC+CGG + chr1_3:12321837-12321856 Msa0104420:intron 30.0%
!! ATCTGATTGTTTGCTATATC+TGG + chr1_3:12321974-12321993 Msa0104420:intron 30.0%
!! TCTGATTGTTTGCTATATCT+GGG + chr1_3:12321975-12321994 Msa0104420:intron 30.0%
TGCTAGATTATGTTAAGAAG+TGG + chr1_3:12322082-12322101 Msa0104420:intron 30.0%
GCTAGATTATGTTAAGAAGT+GGG + chr1_3:12322083-12322102 Msa0104420:intron 30.0%
!!! TGACAACTTGTCACTTTTTA+TGG - chr1_3:12322370-12322389 None:intergenic 30.0%
! TAGTTTTTGCAGAATAGAGA+AGG + chr1_3:12322783-12322802 Msa0104420:intron 30.0%
! CTCTATTTTACGGGTATTTT+TGG + chr1_3:12322859-12322878 Msa0104420:intron 30.0%
! TAACTTTGATCTGTGTCTTT+TGG + chr1_3:12323076-12323095 Msa0104420:intron 30.0%
! AAAGCAACAAACCTTCTTTT+TGG - chr1_3:12323253-12323272 None:intergenic 30.0%
AACTTCTTGTTGAAATGGAT+GGG + chr1_3:12323465-12323484 Msa0104420:CDS 30.0%
GCTGTAGGGAATAATATTAA+TGG + chr1_3:12323571-12323590 Msa0104420:intron 30.0%
GATTGAAATAGAAACTGGAA+AGG - chr1_3:12323807-12323826 None:intergenic 30.0%
GTAAGATGACTAACAAATTC+TGG + chr1_3:12323867-12323886 Msa0104420:intron 30.0%
! AGTATATGATTCGCATTGAT+TGG - chr1_3:12324070-12324089 None:intergenic 30.0%
TATATCACATACACTAGATC+TGG + chr1_3:12324122-12324141 Msa0104420:intron 30.0%
TGCAAAAGACCGAATAATTA+TGG + chr1_3:12324221-12324240 Msa0104420:CDS 30.0%
GCAAAAGACCGAATAATTAT+GGG + chr1_3:12324222-12324241 Msa0104420:CDS 30.0%
GCGAAAAACAATGTTTGTAT+CGG + chr1_3:12324251-12324270 Msa0104420:CDS 30.0%
AAAAACAATGTTTGTATCGG+AGG + chr1_3:12324254-12324273 Msa0104420:CDS 30.0%
TGTAGGAATATGTATATGTC+AGG + chr1_3:12324293-12324312 Msa0104420:intron 30.0%
AACATAGGTTTACAACTACA+GGG - chr1_3:12324431-12324450 None:intergenic 30.0%
! TGAGTTTACAACAGTCTTAT+AGG + chr1_3:12324452-12324471 Msa0104420:intron 30.0%
TTCATTGACAGTATATGGAA+TGG - chr1_3:12324594-12324613 None:intergenic 30.0%
ATGTTAGGCAATAAAAAGAG+CGG - chr1_3:12324671-12324690 None:intergenic 30.0%
! TAAGGGTATAATTGGGATAA+TGG + chr1_3:12324899-12324918 Msa0104420:intron 30.0%
GCAACTAACTATTCATTAGA+TGG - chr1_3:12325175-12325194 None:intergenic 30.0%
!! AGTTGATAGGATAGGTAAAT+TGG + chr1_3:12325216-12325235 Msa0104420:intron 30.0%
ATTGATGTCTCATCATTTGA+GGG - chr1_3:12325571-12325590 None:intergenic 30.0%
TATTGATGTCTCATCATTTG+AGG - chr1_3:12325572-12325591 None:intergenic 30.0%
CACAAATGAACATCAACAAA+AGG - chr1_3:12325825-12325844 None:intergenic 30.0%
AGCAGAAAGTAAGATATATC+TGG - chr1_3:12325880-12325899 None:intergenic 30.0%
!! TTCAAAAGGTATCAAGTTGT+GGG + chr1_3:12325975-12325994 Msa0104420:intron 30.0%
AATCGGACCAATTCATATAA+AGG + chr1_3:12326009-12326028 Msa0104420:intron 30.0%
GACATCAACAATCAAATTCA+TGG + chr1_3:12326151-12326170 Msa0104420:intron 30.0%
! GAATCAAAAGCAACTTTTTG+AGG + chr1_3:12326314-12326333 Msa0104420:intron 30.0%
! ATGACTTTTTACATGCCAAA+CGG - chr1_3:12326399-12326418 None:intergenic 30.0%
!!! GTCATTTTTTTAGCATGAGA+AGG + chr1_3:12326436-12326455 Msa0104420:intron 30.0%
TGTACAGTATAAATTCGTAC+AGG + chr1_3:12326653-12326672 Msa0104420:three_prime_UTR 30.0%
TTTGCTACACAGATATTCAA+AGG - chr1_3:12326763-12326782 None:intergenic 30.0%
! GACTGAATGCTAAGATTTTG+TGG - chr1_3:12315557-12315576 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr1_3:12315833-12315852 None:intergenic 35.0%
GAGGGAGTAGTAAACTAATA+AGG + chr1_3:12316139-12316158 Msa0104420:intron 35.0%
AATGATGTGACCAACTTCAA+TGG + chr1_3:12316252-12316271 Msa0104420:intron 35.0%
! CAAAGGGGTGTACATATTAA+AGG - chr1_3:12316495-12316514 None:intergenic 35.0%
! ATTTTTCACTGCGGTACAAA+GGG - chr1_3:12316511-12316530 None:intergenic 35.0%
! AATTTTTCACTGCGGTACAA+AGG - chr1_3:12316512-12316531 None:intergenic 35.0%
GTCACGCAACTTATAAAATG+TGG + chr1_3:12316680-12316699 Msa0104420:intron 35.0%
! GTACCTATTTTCTTGAATGG+AGG + chr1_3:12316812-12316831 Msa0104420:intron 35.0%
AAAGGGAACTACTACTAGTT+TGG - chr1_3:12316998-12317017 None:intergenic 35.0%
TTTCCATTCAATTCACCAAC+TGG + chr1_3:12317043-12317062 Msa0104420:intron 35.0%
! GGAGAAAGTGATACATTTTG+TGG - chr1_3:12317071-12317090 None:intergenic 35.0%
!! AGATTAAAATGATGGGTACG+TGG - chr1_3:12317107-12317126 None:intergenic 35.0%
AATTTGAAGGACCAGTAAAG+TGG - chr1_3:12317158-12317177 None:intergenic 35.0%
ATGGTGATTGTGAGATGTAA+AGG - chr1_3:12317236-12317255 None:intergenic 35.0%
TTGTTGAGCTTAATAAGCAC+AGG + chr1_3:12317467-12317486 Msa0104420:CDS 35.0%
GTATTGTGTTTGGGAAATTG+GGG + chr1_3:12317576-12317595 Msa0104420:intron 35.0%
AAATAAGCTCAATCCAAACG+GGG + chr1_3:12317851-12317870 Msa0104420:intron 35.0%
!! CCGTTTGAGAGAATTTGTTT+TGG + chr1_3:12317891-12317910 Msa0104420:intron 35.0%
AAGAAAAGAGGAAGAGAAAC+TGG + chr1_3:12318167-12318186 Msa0104420:intron 35.0%
TGGGTTTGTAATTCTTGAGA+TGG + chr1_3:12318638-12318657 Msa0104420:intron 35.0%
! AGGACCCTTTTACAGAATTT+TGG - chr1_3:12319195-12319214 None:intergenic 35.0%
!!! ATTTTTTAGCCGAATTTCGG+AGG + chr1_3:12319234-12319253 Msa0104420:intron 35.0%
TTAGCATTATGGTTGTGTTC+AGG - chr1_3:12319315-12319334 None:intergenic 35.0%
!! TCTAAGATGACGGAGAAATT+AGG + chr1_3:12319358-12319377 Msa0104420:intron 35.0%
!! CTAAGATGACGGAGAAATTA+GGG + chr1_3:12319359-12319378 Msa0104420:intron 35.0%
!! TAAGATGACGGAGAAATTAG+GGG + chr1_3:12319360-12319379 Msa0104420:intron 35.0%
AATTGAGCTTAAGCTCTTGT+TGG - chr1_3:12319548-12319567 None:intergenic 35.0%
ATGCATTTGAGAGGAAAGTA+AGG + chr1_3:12319623-12319642 Msa0104420:intron 35.0%
ATAATGACGTTGTTTGACCA+AGG + chr1_3:12319673-12319692 Msa0104420:intron 35.0%
ATTAGGTTTGTCAATGACCT+TGG - chr1_3:12319693-12319712 None:intergenic 35.0%
ATTTCTCCGAAATATGCTTC+TGG + chr1_3:12319795-12319814 Msa0104420:intron 35.0%
! TCAGATCCAGAAGCATATTT+CGG - chr1_3:12319804-12319823 None:intergenic 35.0%
!! ATTTTGTTTACCGTAGCTGT+TGG + chr1_3:12320348-12320367 Msa0104420:intron 35.0%
GGAATACAAGTATGCATCAA+AGG - chr1_3:12320442-12320461 None:intergenic 35.0%
GCTGCACTTCAAAAATACAT+CGG + chr1_3:12320492-12320511 Msa0104420:CDS 35.0%
AAGTTCATCTTATACCCCAA+AGG + chr1_3:12320551-12320570 Msa0104420:CDS 35.0%
!!! ATTAACGGGTTAACCTTTTC+TGG - chr1_3:12320597-12320616 None:intergenic 35.0%
GTGTGTATTAGCAAGAAATC+TGG + chr1_3:12320715-12320734 Msa0104420:intron 35.0%
TTAGCGGGAACTATCTTATT+TGG - chr1_3:12320982-12321001 None:intergenic 35.0%
GTCGATGAAATAGTTAGCAA+TGG - chr1_3:12321010-12321029 None:intergenic 35.0%
CCATATGACAAATAAGGGTA+AGG - chr1_3:12321116-12321135 None:intergenic 35.0%
! CCTTACCCTTATTTGTCATA+TGG + chr1_3:12321113-12321132 Msa0104420:intron 35.0%
GAGCTTCCATATGACAAATA+AGG - chr1_3:12321122-12321141 None:intergenic 35.0%
ATCAGTTCCTAAACAGTGAT+TGG - chr1_3:12321470-12321489 None:intergenic 35.0%
! CTAAGATGATCCTCTTTTCA+GGG + chr1_3:12321729-12321748 Msa0104420:intron 35.0%
! TAAGATGATCCTCTTTTCAG+GGG + chr1_3:12321730-12321749 Msa0104420:intron 35.0%
!! ACTTTTGGGAAGTTTTTGGA+AGG + chr1_3:12321825-12321844 Msa0104420:intron 35.0%
ACGATAGAAAAATGGAACAC+CGG - chr1_3:12322026-12322045 None:intergenic 35.0%
! AGGGGTATATTCTGTTATTC+TGG + chr1_3:12322123-12322142 Msa0104420:intron 35.0%
! TATCCTGGTATACCAGTTTT+GGG - chr1_3:12322224-12322243 None:intergenic 35.0%
GCTCTATTATCATGAAACAG+AGG + chr1_3:12322557-12322576 Msa0104420:intron 35.0%
CTATTATCATGAAACAGAGG+AGG + chr1_3:12322560-12322579 Msa0104420:intron 35.0%
TTTGCAGAATAGAGAAGGAA+AGG + chr1_3:12322788-12322807 Msa0104420:intron 35.0%
TTGCAGAATAGAGAAGGAAA+GGG + chr1_3:12322789-12322808 Msa0104420:intron 35.0%
CCGTAAAATAGAGTCTGTTA+GGG - chr1_3:12322852-12322871 None:intergenic 35.0%
! CCCTAACAGACTCTATTTTA+CGG + chr1_3:12322849-12322868 Msa0104420:intron 35.0%
! CCTAACAGACTCTATTTTAC+GGG + chr1_3:12322850-12322869 Msa0104420:intron 35.0%
CAACAGATGTACTACAATGT+GGG - chr1_3:12322895-12322914 None:intergenic 35.0%
ACAACAGATGTACTACAATG+TGG - chr1_3:12322896-12322915 None:intergenic 35.0%
GTCAGTCTTTCATTGCATTA+AGG + chr1_3:12323122-12323141 Msa0104420:intron 35.0%
GGAAAGTTTAATATGTTGGC+TGG + chr1_3:12323143-12323162 Msa0104420:intron 35.0%
! GTTTAATATGTTGGCTGGTA+TGG + chr1_3:12323148-12323167 Msa0104420:intron 35.0%
! TCATATTTCTGTTCATGCTC+AGG + chr1_3:12323181-12323200 Msa0104420:intron 35.0%
ATTTCAAGCAGCCAAAAAGA+AGG + chr1_3:12323239-12323258 Msa0104420:CDS 35.0%
! GTGTGTTGGTACACTAAAAT+AGG - chr1_3:12323302-12323321 None:intergenic 35.0%
!! ATTTTAGTGTACCAACACAC+AGG + chr1_3:12323302-12323321 Msa0104420:intron 35.0%
! CTTCTACATGTTTCTGATTG+TGG + chr1_3:12323326-12323345 Msa0104420:intron 35.0%
ATTGATGAAATTGATGCCGT+TGG + chr1_3:12323395-12323414 Msa0104420:CDS 35.0%
CATCCATTTCAACAAGAAGT+TGG - chr1_3:12323466-12323485 None:intergenic 35.0%
CAACTTCTTGTTGAAATGGA+TGG + chr1_3:12323464-12323483 Msa0104420:CDS 35.0%
TCCAGTTTCTATTTCAATCC+AGG + chr1_3:12323808-12323827 Msa0104420:intron 35.0%
ACCTGGATTGAAATAGAAAC+TGG - chr1_3:12323812-12323831 None:intergenic 35.0%
! ATATCTACATTATCGGCTGT+AGG - chr1_3:12323966-12323985 None:intergenic 35.0%
!! ATATGATTCGCATTGATTGG+AGG - chr1_3:12324067-12324086 None:intergenic 35.0%
ATTACAGAGAACATCAGTCA+GGG - chr1_3:12324102-12324121 None:intergenic 35.0%
AATTACAGAGAACATCAGTC+AGG - chr1_3:12324103-12324122 None:intergenic 35.0%
GAAATTAACAGCTTCTCAGT+TGG + chr1_3:12324194-12324213 Msa0104420:CDS 35.0%
GCTCTGTACCCATAATTATT+CGG - chr1_3:12324233-12324252 None:intergenic 35.0%
! GAGTCAAAAAAGGTATGTGT+AGG + chr1_3:12324276-12324295 Msa0104420:intron 35.0%
!! AGTTTGCTACTTAAGAACTG+TGG + chr1_3:12324322-12324341 Msa0104420:intron 35.0%
GAACATAGGTTTACAACTAC+AGG - chr1_3:12324432-12324451 None:intergenic 35.0%
CTGTTGTAAACTCAGAACAT+AGG - chr1_3:12324446-12324465 None:intergenic 35.0%
TTGCTAAATCAGTTGTTAGC+TGG + chr1_3:12325191-12325210 Msa0104420:intron 35.0%
! TTACTCTAGGAAATGGTTCA+AGG - chr1_3:12325266-12325285 None:intergenic 35.0%
AGCAGGTTAGAAATTACTCT+AGG - chr1_3:12325279-12325298 None:intergenic 35.0%
!!! TTTGTTTTTGAGCAATCAGC+AGG - chr1_3:12325296-12325315 None:intergenic 35.0%
GCATAATTGGATTGTTGTGT+TGG + chr1_3:12325360-12325379 Msa0104420:intron 35.0%
TATTAAGGGCAACAATTGCA+TGG - chr1_3:12325474-12325493 None:intergenic 35.0%
GTTGCAGAAGAACTTATCTT+TGG + chr1_3:12325640-12325659 Msa0104420:CDS 35.0%
CAGAAGAACTTATCTTTGGT+CGG + chr1_3:12325644-12325663 Msa0104420:CDS 35.0%
AGAAGAACTTATCTTTGGTC+GGG + chr1_3:12325645-12325664 Msa0104420:CDS 35.0%
GTTGATGTTCATTTGTGACT+TGG + chr1_3:12325828-12325847 Msa0104420:intron 35.0%
!! CTTCAAAAGGTATCAAGTTG+TGG + chr1_3:12325974-12325993 Msa0104420:intron 35.0%
GGTCTCTCCTTTATATGAAT+TGG - chr1_3:12326019-12326038 None:intergenic 35.0%
TGTTTGATATCTAGACCGTT+TGG + chr1_3:12326381-12326400 Msa0104420:intron 35.0%
!! TGAGAAGGCATTACATACAT+TGG + chr1_3:12326451-12326470 Msa0104420:CDS 35.0%
GTGGTGTAGTATTCTAATAG+TGG - chr1_3:12326811-12326830 None:intergenic 35.0%
!!! TGCTGAGGGCAATATTTTTT+TGG + chr1_3:12326832-12326851 Msa0104420:three_prime_UTR 35.0%
!! GACTCTAAAAGCATCCACAA+TGG + chr1_3:12315802-12315821 Msa0104420:intron 40.0%
! TTTTTCACTGCGGTACAAAG+GGG - chr1_3:12316510-12316529 None:intergenic 40.0%
GGTCACACAGACCATATATT+TGG + chr1_3:12316701-12316720 Msa0104420:intron 40.0%
GAGCCTCCATTCAAGAAAAT+AGG - chr1_3:12316818-12316837 None:intergenic 40.0%
! ATACATTTTGTGGGACCAGT+TGG - chr1_3:12317061-12317080 None:intergenic 40.0%
!! TAAAATGATGGGTACGTGGA+AGG - chr1_3:12317103-12317122 None:intergenic 40.0%
! TTTTGTAATCGGGTAACAGG+TGG - chr1_3:12317181-12317200 None:intergenic 40.0%
!! GAGTTTTGTAATCGGGTAAC+AGG - chr1_3:12317184-12317203 None:intergenic 40.0%
! ATTGGCGAAGTTGATTACTG+AGG + chr1_3:12317402-12317421 Msa0104420:CDS 40.0%
TGGGAAATTGGGGTTTAGTT+TGG + chr1_3:12317586-12317605 Msa0104420:intron 40.0%
TGTAGGACATGTAAACCAAG+TGG + chr1_3:12317618-12317637 Msa0104420:intron 40.0%
AAACGGTTCGTCTCTAACTA+AGG - chr1_3:12317877-12317896 None:intergenic 40.0%
! AGGACATGCAACAATTTGCT+TGG + chr1_3:12317965-12317984 Msa0104420:intron 40.0%
! GGACATGCAACAATTTGCTT+GGG + chr1_3:12317966-12317985 Msa0104420:intron 40.0%
TCCAAAGATGCAATACACTC+AGG + chr1_3:12318229-12318248 Msa0104420:intron 40.0%
!! GCTGTTTTCATATGCTATCG+TGG + chr1_3:12318379-12318398 Msa0104420:intron 40.0%
CTCGCAAATCTTATGTCTGT+TGG + chr1_3:12318476-12318495 Msa0104420:intron 40.0%
AGAATATCTTCGAGCACTAG+TGG + chr1_3:12318772-12318791 Msa0104420:CDS 40.0%
TGCAGAATATCTTCCTGATG+AGG + chr1_3:12318808-12318827 Msa0104420:CDS 40.0%
TATCTTCCTGATGAGGAATC+TGG + chr1_3:12318815-12318834 Msa0104420:CDS 40.0%
AGTGCTTCATTGTTCACTAG+TGG + chr1_3:12318922-12318941 Msa0104420:intron 40.0%
TAGCTACAAAACAAGATGCC+TGG - chr1_3:12318961-12318980 None:intergenic 40.0%
CCAAAACCATAAGCAGCTTA+AGG - chr1_3:12319082-12319101 None:intergenic 40.0%
! CCTTAAGCTGCTTATGGTTT+TGG + chr1_3:12319079-12319098 Msa0104420:intron 40.0%
! GTCTTTCTTTTACTACCGAG+AGG + chr1_3:12319271-12319290 Msa0104420:intron 40.0%
! TGTGTTCAGGTTATGAGACT+TGG - chr1_3:12319302-12319321 None:intergenic 40.0%
!! AAGATGACGGAGAAATTAGG+GGG + chr1_3:12319361-12319380 Msa0104420:intron 40.0%
!! TGATTTAAGTTGGGGGAATG+AGG + chr1_3:12319395-12319414 Msa0104420:intron 40.0%
GAGAAGTGAATGCATTTGAG+AGG + chr1_3:12319614-12319633 Msa0104420:intron 40.0%
AGTTGCAAGAGTTGAAACAG+CGG + chr1_3:12320009-12320028 Msa0104420:intron 40.0%
TTTACCATAACCACGTGCAA+CGG - chr1_3:12320089-12320108 None:intergenic 40.0%
TACAAGTATGCATCAAAGGG+TGG - chr1_3:12320438-12320457 None:intergenic 40.0%
TGTACGTCTGTCAGGTTTAT+GGG + chr1_3:12320465-12320484 Msa0104420:intron 40.0%
! TTCCTTGTTTAGCTCCTTTG+GGG - chr1_3:12320568-12320587 None:intergenic 40.0%
! CTTCCTTGTTTAGCTCCTTT+GGG - chr1_3:12320569-12320588 None:intergenic 40.0%
! ACTTCCTTGTTTAGCTCCTT+TGG - chr1_3:12320570-12320589 None:intergenic 40.0%
TTAGCAATGGCATCATTAGC+GGG - chr1_3:12320997-12321016 None:intergenic 40.0%
GTTAGCAATGGCATCATTAG+CGG - chr1_3:12320998-12321017 None:intergenic 40.0%
TGTCCAACTTTCTTGTTGAC+TGG - chr1_3:12321032-12321051 None:intergenic 40.0%
TGATGCAAAGCAAGAACTTG+AGG + chr1_3:12321267-12321286 Msa0104420:CDS 40.0%
CTCTAGTCCAATCACTGTTT+AGG + chr1_3:12321460-12321479 Msa0104420:intron 40.0%
! GCTAAGATGATCCTCTTTTC+AGG + chr1_3:12321728-12321747 Msa0104420:intron 40.0%
!! GTTCCATTTTTCTATCGTGC+CGG + chr1_3:12322028-12322047 Msa0104420:CDS 40.0%
!!! ATTTTTCTATCGTGCCGGTT+CGG + chr1_3:12322033-12322052 Msa0104420:CDS 40.0%
GGCACATGATATGCTAGAAA+GGG + chr1_3:12322104-12322123 Msa0104420:intron 40.0%
GCACATGATATGCTAGAAAG+GGG + chr1_3:12322105-12322124 Msa0104420:intron 40.0%
AACGACTATGTTGTCAATCG+TGG + chr1_3:12322176-12322195 Msa0104420:intron 40.0%
ATGTTGTCAATCGTGGATAG+TGG + chr1_3:12322183-12322202 Msa0104420:intron 40.0%
! ATCCTGGTATACCAGTTTTG+GGG - chr1_3:12322223-12322242 None:intergenic 40.0%
! CTATCCTGGTATACCAGTTT+TGG - chr1_3:12322225-12322244 None:intergenic 40.0%
ATGAAGTTGCCATGACTGAA+CGG + chr1_3:12322503-12322522 Msa0104420:intron 40.0%
TTGTCCGAATAGAACAGAGA+AGG - chr1_3:12322611-12322630 None:intergenic 40.0%
TCTGTTCTATTCGGACAACA+GGG + chr1_3:12322613-12322632 Msa0104420:intron 40.0%
TCTGCAAGCAGAACAAGAAA+GGG - chr1_3:12322747-12322766 None:intergenic 40.0%
TTCTGCAAGCAGAACAAGAA+AGG - chr1_3:12322748-12322767 None:intergenic 40.0%
TTCTTGTTCTGCTTGCAGAA+TGG + chr1_3:12322748-12322767 Msa0104420:intron 40.0%
! TGCTTGCAGAATGGATGTTT+TGG + chr1_3:12322757-12322776 Msa0104420:intron 40.0%
AGAGAAGGAAAGGGAATGTT+AGG + chr1_3:12322798-12322817 Msa0104420:intron 40.0%
GAGAAGGAAAGGGAATGTTA+GGG + chr1_3:12322799-12322818 Msa0104420:intron 40.0%
CCCGTAAAATAGAGTCTGTT+AGG - chr1_3:12322853-12322872 None:intergenic 40.0%
CTGTTTCCTAGTTGATCCAA+CGG - chr1_3:12323414-12323433 None:intergenic 40.0%
TTGGATCAACTAGGAAACAG+TGG + chr1_3:12323414-12323433 Msa0104420:CDS 40.0%
TGGATCAACTAGGAAACAGT+GGG + chr1_3:12323415-12323434 Msa0104420:CDS 40.0%
!! AAGTTGGTGCAATGTCTTCT+TGG - chr1_3:12323450-12323469 None:intergenic 40.0%
GCACCAACTTCTTGTTGAAA+TGG + chr1_3:12323460-12323479 Msa0104420:CDS 40.0%
AGAGCTGGATCAAGAATATC+AGG - chr1_3:12323611-12323630 None:intergenic 40.0%
ACATGTCGATCAAATCTACC+AGG - chr1_3:12323641-12323660 None:intergenic 40.0%
! CTGGATTTGGTACAACAATC+TGG - chr1_3:12323896-12323915 None:intergenic 40.0%
GATATTAAAGCAATAGCCCG+TGG + chr1_3:12323981-12324000 Msa0104420:CDS 40.0%
TAATAGCAGCAATGTTCACC+AGG - chr1_3:12324152-12324171 None:intergenic 40.0%
CATTGCTGCTATTAAAGCTG+CGG + chr1_3:12324158-12324177 Msa0104420:CDS 40.0%
TGTATCGGAGGAGTCAAAAA+AGG + chr1_3:12324266-12324285 Msa0104420:CDS 40.0%
TTAAGACAATGCAGCACAGA+AGG - chr1_3:12324394-12324413 None:intergenic 40.0%
TTACAACTACAGGGAAGACT+CGG - chr1_3:12324422-12324441 None:intergenic 40.0%
! CTACCCCTTTCAACACTTTT+GGG - chr1_3:12325109-12325128 None:intergenic 40.0%
! ACTACCCCTTTCAACACTTT+TGG - chr1_3:12325110-12325129 None:intergenic 40.0%
!! TTGTTAGCTGGTGAGTTGAT+AGG + chr1_3:12325203-12325222 Msa0104420:intron 40.0%
AGGAAATGGTTCAAGGTACA+GGG - chr1_3:12325259-12325278 None:intergenic 40.0%
TAGGAAATGGTTCAAGGTAC+AGG - chr1_3:12325260-12325279 None:intergenic 40.0%
CATAACTGAGCATGCATCAA+TGG - chr1_3:12325403-12325422 None:intergenic 40.0%
CTTACTGCTTATCATGAGAG+CGG + chr1_3:12325448-12325467 Msa0104420:CDS 40.0%
ATTGTTGCCCTTAATACCGA+CGG + chr1_3:12325478-12325497 Msa0104420:CDS 40.0%
AGCTCGTCTTGATGTTTGTA+TGG + chr1_3:12325609-12325628 Msa0104420:CDS 40.0%
GCTCGTCTTGATGTTTGTAT+GGG + chr1_3:12325610-12325629 Msa0104420:CDS 40.0%
TGTGGGATGAGTGATACAAT+CGG + chr1_3:12325992-12326011 Msa0104420:intron 40.0%
AGTTTAACAACCTGCAGAAC+AGG - chr1_3:12326193-12326212 None:intergenic 40.0%
CACGATCATATGCATCTCTA+AGG - chr1_3:12326216-12326235 None:intergenic 40.0%
! TGTGAAAGCTCTTCTGAAGA+AGG + chr1_3:12326234-12326253 Msa0104420:CDS 40.0%
AGGAAAACTTCCAGAACAAC+AGG + chr1_3:12326544-12326563 Msa0104420:CDS 40.0%
TCTTCTTGTTCCTGTTGTTC+TGG - chr1_3:12326557-12326576 None:intergenic 40.0%
AGGAACAAGAAGAAGCAGAA+GGG + chr1_3:12326564-12326583 Msa0104420:CDS 40.0%
! GATAAGAATTGCATGGGCTA+AGG - chr1_3:12326711-12326730 None:intergenic 40.0%
AATCCTGCTAACGATGACAA+AGG + chr1_3:12326784-12326803 Msa0104420:three_prime_UTR 40.0%
! AATACTACACCACTTGCTGA+GGG + chr1_3:12326818-12326837 Msa0104420:three_prime_UTR 40.0%
AAAATATTGCCCTCAGCAAG+TGG - chr1_3:12326830-12326849 None:intergenic 40.0%
!! GGACCAGTTGGTGAATTGAA+TGG - chr1_3:12317049-12317068 None:intergenic 45.0%
!! GTACGTGGAAGGTTGATGTT+GGG - chr1_3:12317092-12317111 None:intergenic 45.0%
! TTTTGTGAAGGAGACGTGGA+TGG - chr1_3:12317133-12317152 None:intergenic 45.0%
! GGATTTTTGTGAAGGAGACG+TGG - chr1_3:12317137-12317156 None:intergenic 45.0%
GGGTAACAGGTGGAATTTGA+AGG - chr1_3:12317171-12317190 None:intergenic 45.0%
TTCTTCTCCTGCCTCCAAAA+CGG - chr1_3:12317382-12317401 None:intergenic 45.0%
TTGGAGGCAGGAGAAGAAAT+TGG + chr1_3:12317384-12317403 Msa0104420:intron 45.0%
GGACATGTAAACCAAGTGGT+TGG + chr1_3:12317622-12317641 Msa0104420:intron 45.0%
!! AAAGAACTTTAGGGCCCGTT+TGG + chr1_3:12317657-12317676 Msa0104420:intron 45.0%
!! TAGTGGCTCTAAGTTCAGTC+AGG - chr1_3:12317920-12317939 None:intergenic 45.0%
GACTGAACTTAGAGCCACTA+AGG + chr1_3:12317920-12317939 Msa0104420:intron 45.0%
GCCTGAGTGTATTGCATCTT+TGG - chr1_3:12318233-12318252 None:intergenic 45.0%
AATACACTCAGGCCCTGTTT+GGG + chr1_3:12318240-12318259 Msa0104420:intron 45.0%
! GGTTTTCCAGATTCCTCATC+AGG - chr1_3:12318824-12318843 None:intergenic 45.0%
GAGGAATCTGGAAAACCTTC+TGG + chr1_3:12318827-12318846 Msa0104420:CDS 45.0%
GCTTCATTGTTCACTAGTGG+AGG + chr1_3:12318925-12318944 Msa0104420:intron 45.0%
TCATTGTTCACTAGTGGAGG+TGG + chr1_3:12318928-12318947 Msa0104420:intron 45.0%
!! AGATGACGGAGAAATTAGGG+GGG + chr1_3:12319362-12319381 Msa0104420:intron 45.0%
!! TTTAAGTTGGGGGAATGAGG+TGG + chr1_3:12319398-12319417 Msa0104420:intron 45.0%
GTTGCAAGAGTTGAAACAGC+GGG + chr1_3:12320010-12320029 Msa0104420:intron 45.0%
! GATGAGACTTTTCTGAACCC+TGG + chr1_3:12320047-12320066 Msa0104420:CDS 45.0%
GCTGCTTCTCAGATATTCCA+GGG - chr1_3:12320067-12320086 None:intergenic 45.0%
GTTTACCGTAGCTGTTGGAT+TGG + chr1_3:12320353-12320372 Msa0104420:intron 45.0%
GAGAGAGATAGGGAAACTAG+AGG - chr1_3:12320390-12320409 None:intergenic 45.0%
ATTCCTACTGTACGTCTGTC+AGG + chr1_3:12320457-12320476 Msa0104420:intron 45.0%
AAACCTGACAGACGTACAGT+AGG - chr1_3:12320463-12320482 None:intergenic 45.0%
CTGTACGTCTGTCAGGTTTA+TGG + chr1_3:12320464-12320483 Msa0104420:intron 45.0%
TACCCCAAAGGAGCTAAACA+AGG + chr1_3:12320563-12320582 Msa0104420:CDS 45.0%
CAAGGAAGTGATGCCAGAAA+AGG + chr1_3:12320581-12320600 Msa0104420:CDS 45.0%
TGGGTTGTCAGTGAGTATCT+TGG + chr1_3:12320735-12320754 Msa0104420:intron 45.0%
CGACCAGTCAACAAGAAAGT+TGG + chr1_3:12321026-12321045 Msa0104420:intron 45.0%
ACTTCAAGAACTAATGGGGG+TGG - chr1_3:12321061-12321080 None:intergenic 45.0%
TGCAAAGCAAGAACTTGAGG+AGG + chr1_3:12321270-12321289 Msa0104420:CDS 45.0%
CCAAGGCGAGTAAATTTAGC+TGG - chr1_3:12321316-12321335 None:intergenic 45.0%
CCAGCTAAATTTACTCGCCT+TGG + chr1_3:12321313-12321332 Msa0104420:CDS 45.0%
GCTAAATTTACTCGCCTTGG+AGG + chr1_3:12321316-12321335 Msa0104420:CDS 45.0%
CAGAAGAATCCCCTGAAAAG+AGG - chr1_3:12321742-12321761 None:intergenic 45.0%
TTTCAGGGGATTCTTCTGAC+TGG + chr1_3:12321744-12321763 Msa0104420:intron 45.0%
TTCAGGGGATTCTTCTGACT+GGG + chr1_3:12321745-12321764 Msa0104420:intron 45.0%
! AGCAGAGTTTTTCCAGTTCC+AGG - chr1_3:12321774-12321793 None:intergenic 45.0%
TGGAAAAACTCTGCTAGCCA+AGG + chr1_3:12321779-12321798 Msa0104420:CDS 45.0%
AAGGACTTAAATCCGGACTC+TGG + chr1_3:12321844-12321863 Msa0104420:intron 45.0%
CACAGATAAGAACCAGAGTC+CGG - chr1_3:12321859-12321878 None:intergenic 45.0%
! TGCTATATCTGGGACCTTGA+AGG + chr1_3:12321985-12322004 Msa0104420:intron 45.0%
TTCTCCAGCAATAGCCTTCA+AGG - chr1_3:12322002-12322021 None:intergenic 45.0%
GAACCGGCACGATAGAAAAA+TGG - chr1_3:12322034-12322053 None:intergenic 45.0%
CATCTCCTCAAATTCCGAAC+CGG - chr1_3:12322050-12322069 None:intergenic 45.0%
GGGCACATGATATGCTAGAA+AGG + chr1_3:12322103-12322122 Msa0104420:intron 45.0%
!!! TGGTATACCAGTTTTGGGGT+TGG - chr1_3:12322219-12322238 None:intergenic 45.0%
AACCCCAAAACTGGTATACC+AGG + chr1_3:12322218-12322237 Msa0104420:intron 45.0%
TGGTATACCAGGATAGCATG+TGG + chr1_3:12322229-12322248 Msa0104420:intron 45.0%
TATACCAGGATAGCATGTGG+TGG + chr1_3:12322232-12322251 Msa0104420:intron 45.0%
ATACCAGGATAGCATGTGGT+GGG + chr1_3:12322233-12322252 Msa0104420:intron 45.0%
AACAGAGAAGGCCGCATTAA+GGG - chr1_3:12322599-12322618 None:intergenic 45.0%
CTCTGTTCTATTCGGACAAC+AGG + chr1_3:12322612-12322631 Msa0104420:intron 45.0%
! TGCACTGAAATTGTGCTGCT+TGG + chr1_3:12322672-12322691 Msa0104420:intron 45.0%
CTTGGAGAATACAGATGCAG+TGG + chr1_3:12322690-12322709 Msa0104420:intron 45.0%
AGAATACAGATGCAGTGGCA+GGG + chr1_3:12322695-12322714 Msa0104420:intron 45.0%
AACAAGAAAGGGAACCTCTG+CGG - chr1_3:12322736-12322755 None:intergenic 45.0%
AGTACATCTGTTGTGCCACA+AGG + chr1_3:12322902-12322921 Msa0104420:intron 45.0%
GTACATCTGTTGTGCCACAA+GGG + chr1_3:12322903-12322922 Msa0104420:intron 45.0%
AGATCTGTGGCGCTATACAT+TGG + chr1_3:12323008-12323027 Msa0104420:intron 45.0%
! TGTTGGCTGGTATGGATGAT+AGG + chr1_3:12323156-12323175 Msa0104420:intron 45.0%
CTGTTCATGCTCAGGTTTGT+TGG + chr1_3:12323189-12323208 Msa0104420:intron 45.0%
!! ATGCTCAGGTTTGTTGGAGT+TGG + chr1_3:12323195-12323214 Msa0104420:intron 45.0%
CATGTAGAAGTCCTGTGTGT+TGG - chr1_3:12323316-12323335 None:intergenic 45.0%
TTGATGCCGTTGGATCAACT+AGG + chr1_3:12323405-12323424 Msa0104420:CDS 45.0%
ATCAACTAGGAAACAGTGGG+AGG + chr1_3:12323418-12323437 Msa0104420:CDS 45.0%
TCAACTAGGAAACAGTGGGA+GGG + chr1_3:12323419-12323438 Msa0104420:CDS 45.0%
GTACCAAATCCAGATGTACG+TGG + chr1_3:12323903-12323922 Msa0104420:CDS 45.0%
CAAATCCAGATGTACGTGGT+CGG + chr1_3:12323907-12323926 Msa0104420:CDS 45.0%
ACGTGGTCGGCAAGAAATAT+TGG + chr1_3:12323920-12323939 Msa0104420:CDS 45.0%
TACACTAGATCTGGCAAACC+TGG + chr1_3:12324131-12324150 Msa0104420:intron 45.0%
GCTATTAAAGCTGCGGTTGA+AGG + chr1_3:12324165-12324184 Msa0104420:CDS 45.0%
TACAACTACAGGGAAGACTC+GGG - chr1_3:12324421-12324440 None:intergenic 45.0%
!! TCCAGCCCAAAAGTGTTGAA+AGG + chr1_3:12325101-12325120 Msa0104420:intron 45.0%
!! CCAGCCCAAAAGTGTTGAAA+GGG + chr1_3:12325102-12325121 Msa0104420:intron 45.0%
!! CAGCCCAAAAGTGTTGAAAG+GGG + chr1_3:12325103-12325122 Msa0104420:intron 45.0%
!! AGCTGGTGAGTTGATAGGAT+AGG + chr1_3:12325208-12325227 Msa0104420:intron 45.0%
ATTCCTAAAGCAGATCCACG+GGG - chr1_3:12325535-12325554 None:intergenic 45.0%
CATTCCTAAAGCAGATCCAC+GGG - chr1_3:12325536-12325555 None:intergenic 45.0%
CCATTCCTAAAGCAGATCCA+CGG - chr1_3:12325537-12325556 None:intergenic 45.0%
CGTCTTGATGTTTGTATGGG+AGG + chr1_3:12325613-12325632 Msa0104420:CDS 45.0%
TACCATGTATTGCGCAAGCT+CGG - chr1_3:12325713-12325732 None:intergenic 45.0%
! TATGCTGCTTCCCTGTTATG+TGG + chr1_3:12325734-12325753 Msa0104420:intron 45.0%
GCTGCACTTTCCACATAACA+GGG - chr1_3:12325747-12325766 None:intergenic 45.0%
AGCTGCACTTTCCACATAAC+AGG - chr1_3:12325748-12325767 None:intergenic 45.0%
CGTGACTGCATTTCAGAACT+TGG - chr1_3:12326040-12326059 None:intergenic 45.0%
GACGATTACTTCTCCCGTAT+CGG + chr1_3:12326519-12326538 Msa0104420:CDS 45.0%
ACGATTACTTCTCCCGTATC+GGG + chr1_3:12326520-12326539 Msa0104420:CDS 45.0%
! GAAGTTTTCCTTCCCGATAC+GGG - chr1_3:12326535-12326554 None:intergenic 45.0%
! GGAAGTTTTCCTTCCCGATA+CGG - chr1_3:12326536-12326555 None:intergenic 45.0%
CAGGAACAAGAAGAAGCAGA+AGG + chr1_3:12326563-12326582 Msa0104420:CDS 45.0%
GGAACAAGAAGAAGCAGAAG+GGG + chr1_3:12326565-12326584 Msa0104420:CDS 45.0%
AGCAGAAGGGGATCTTGTAT+TGG + chr1_3:12326577-12326596 Msa0104420:CDS 45.0%
! AGAATTGCATGGGCTAAGGA+GGG - chr1_3:12326707-12326726 None:intergenic 45.0%
! AAGAATTGCATGGGCTAAGG+AGG - chr1_3:12326708-12326727 None:intergenic 45.0%
! GAATACTACACCACTTGCTG+AGG + chr1_3:12326817-12326836 Msa0104420:three_prime_UTR 45.0%
!!! TTTTTTTTTAATTATAATGT+AGG + chr1_3:12317526-12317545 Msa0104420:intron 5.0%
!! ATAAAAATGATAAATAAATT+TGG - chr1_3:12323551-12323570 None:intergenic 5.0%
!! GAATGGAGGGAGTACCATTG+TGG - chr1_3:12315819-12315838 None:intergenic 50.0%
!! GGTACGTGGAAGGTTGATGT+TGG - chr1_3:12317093-12317112 None:intergenic 50.0%
!! TGGTTGATTGGTGGCCGTTT+TGG + chr1_3:12317365-12317384 Msa0104420:intron 50.0%
!! TTGATTGGTGGCCGTTTTGG+AGG + chr1_3:12317368-12317387 Msa0104420:intron 50.0%
TTACTGAGGCCGATGCGAAT+CGG + chr1_3:12317416-12317435 Msa0104420:CDS 50.0%
!! AGCATCCAACCGATTCGCAT+CGG - chr1_3:12317428-12317447 None:intergenic 50.0%
ATCACTCGAGTCCAACCACT+TGG - chr1_3:12317636-12317655 None:intergenic 50.0%
TCTCTAACTAAGGCCCCGTT+TGG - chr1_3:12317867-12317886 None:intergenic 50.0%
CAATACACTCAGGCCCTGTT+TGG + chr1_3:12318239-12318258 Msa0104420:intron 50.0%
TGAAGAAAGGGACAGAGCTG+TGG + chr1_3:12318733-12318752 Msa0104420:CDS 50.0%
!! ACCTTCTGGAATTCCCACCT+TGG + chr1_3:12318841-12318860 Msa0104420:CDS 50.0%
ACCAAGGTGGGAATTCCAGA+AGG - chr1_3:12318845-12318864 None:intergenic 50.0%
!! TGAGACTTGGTTCTGCCTCT+CGG - chr1_3:12319289-12319308 None:intergenic 50.0%
GGGGGAATGAGGTGGAAAAA+TGG + chr1_3:12319406-12319425 Msa0104420:intron 50.0%
GGCTGCTTCTCAGATATTCC+AGG - chr1_3:12320068-12320087 None:intergenic 50.0%
CCAGACCAATCCAACAGCTA+CGG - chr1_3:12320361-12320380 None:intergenic 50.0%
!! TTGGGTGGGATTGGTTCTTC+AGG + chr1_3:12320519-12320538 Msa0104420:CDS 50.0%
!! GGGATTGGTTCTTCAGGTGT+TGG + chr1_3:12320525-12320544 Msa0104420:CDS 50.0%
AGTTTCCTTATCCAGTGCCC+CGG - chr1_3:12320817-12320836 None:intergenic 50.0%
TGATCACTTAACCAGTGCCC+CGG + chr1_3:12320923-12320942 Msa0104420:intron 50.0%
GCAAGAACTTGAGGAGGTTG+TGG + chr1_3:12321276-12321295 Msa0104420:CDS 50.0%
TCAGGGGATTCTTCTGACTG+GGG + chr1_3:12321746-12321765 Msa0104420:intron 50.0%
AAGGCTATTGCTGGAGAAGC+CGG + chr1_3:12322004-12322023 Msa0104420:intron 50.0%
AAGTTGCCATGACTGAACGG+AGG + chr1_3:12322506-12322525 Msa0104420:intron 50.0%
GAACAGAGAAGGCCGCATTA+AGG - chr1_3:12322600-12322619 None:intergenic 50.0%
GCGGCCTTCTCTGTTCTATT+CGG + chr1_3:12322604-12322623 Msa0104420:intron 50.0%
GAGAATACAGATGCAGTGGC+AGG + chr1_3:12322694-12322713 Msa0104420:intron 50.0%
TGTCTGGACTCATTCCCTTG+TGG - chr1_3:12322920-12322939 None:intergenic 50.0%
!! GGTTTGTTGGAGTTGGTGCT+CGG + chr1_3:12323202-12323221 Msa0104420:intron 50.0%
GGTGCAATGTCTTCTTGGTG+TGG - chr1_3:12323445-12323464 None:intergenic 50.0%
! GGATGGGTTTGAGCAGAATG+AGG + chr1_3:12323481-12323500 Msa0104420:CDS 50.0%
TCAATCCAGGTCGTTCTACC+CGG + chr1_3:12323821-12323840 Msa0104420:intron 50.0%
ATTAACCGGGTAGAACGACC+TGG - chr1_3:12323829-12323848 None:intergenic 50.0%
CGACCACGTACATCTGGATT+TGG - chr1_3:12323909-12323928 None:intergenic 50.0%
CGGCTGTAGGTTTATCATGC+AGG - chr1_3:12323953-12323972 None:intergenic 50.0%
! ATTGAATCCTGGGGTACCAC+GGG - chr1_3:12324000-12324019 None:intergenic 50.0%
! CATTGAATCCTGGGGTACCA+CGG - chr1_3:12324001-12324020 None:intergenic 50.0%
GTGGTACCCCAGGATTCAAT+GGG + chr1_3:12324000-12324019 Msa0104420:CDS 50.0%
TGGTACCCCAGGATTCAATG+GGG + chr1_3:12324001-12324020 Msa0104420:CDS 50.0%
! CCCTTTCAACACTTTTGGGC+TGG - chr1_3:12325105-12325124 None:intergenic 50.0%
ATGTGCGCCGTCGGTATTAA+GGG - chr1_3:12325488-12325507 None:intergenic 50.0%
!! CCGTGGATCTGCTTTAGGAA+TGG + chr1_3:12325534-12325553 Msa0104420:CDS 50.0%
GGTCGGGATAATGTCACAAC+TGG + chr1_3:12325661-12325680 Msa0104420:CDS 50.0%
TACCGAGCTTGCGCAATACA+TGG + chr1_3:12325708-12325727 Msa0104420:CDS 50.0%
! GCAGTCACGTATTGATGCAG+AGG + chr1_3:12326051-12326070 Msa0104420:intron 50.0%
! CTGAGCTTTTCCTGTTCTGC+AGG + chr1_3:12326180-12326199 Msa0104420:intron 50.0%
TTACTTCTCCCGTATCGGGA+AGG + chr1_3:12326524-12326543 Msa0104420:CDS 50.0%
GGACCTTTGTCATCGTTAGC+AGG - chr1_3:12326790-12326809 None:intergenic 50.0%
GACAGAGCTGTGGACAGTAG+AGG + chr1_3:12318743-12318762 Msa0104420:CDS 55.0%
GAGGCGGTTCCTCCGAAATT+CGG - chr1_3:12319246-12319265 None:intergenic 55.0%
GAGTTGAAACAGCGGGCATC+TGG + chr1_3:12320017-12320036 Msa0104420:CDS 55.0%
!! CCGTAGCTGTTGGATTGGTC+TGG + chr1_3:12320358-12320377 Msa0104420:intron 55.0%
GTCATGTTAACCAGTGCCCC+CGG + chr1_3:12320795-12320814 Msa0104420:intron 55.0%
TCATGTTAACCAGTGCCCCC+GGG + chr1_3:12320796-12320815 Msa0104420:intron 55.0%
TTTCCTTATCCAGTGCCCCG+GGG - chr1_3:12320815-12320834 None:intergenic 55.0%
GTTTCCTTATCCAGTGCCCC+GGG - chr1_3:12320816-12320835 None:intergenic 55.0%
GATCACTTAACCAGTGCCCC+GGG + chr1_3:12320924-12320943 Msa0104420:intron 55.0%
ATCACTTAACCAGTGCCCCG+GGG + chr1_3:12320925-12320944 Msa0104420:intron 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr1_3:12320944-12320963 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr1_3:12320945-12320964 None:intergenic 55.0%
CCTTTGGCAGCTTTCCTCCA+AGG - chr1_3:12321333-12321352 None:intergenic 55.0%
CCTTGGAGGAAAGCTGCCAA+AGG + chr1_3:12321330-12321349 Msa0104420:CDS 55.0%
! ATTCTTCTGACTGGGGCACC+TGG + chr1_3:12321753-12321772 Msa0104420:CDS 55.0%
GGGACCTTGAAGGCTATTGC+TGG + chr1_3:12321995-12322014 Msa0104420:intron 55.0%
!! TCGTGCCGGTTCGGAATTTG+AGG + chr1_3:12322042-12322061 Msa0104420:CDS 55.0%
TACGCGTCCAACCCCAAAAC+TGG + chr1_3:12322209-12322228 Msa0104420:intron 55.0%
CATCCCACCACATGCTATCC+TGG - chr1_3:12322239-12322258 None:intergenic 55.0%
! CAGGATAGCATGTGGTGGGA+TGG + chr1_3:12322237-12322256 Msa0104420:intron 55.0%
TTGCCATGACTGAACGGAGG+AGG + chr1_3:12322509-12322528 Msa0104420:intron 55.0%
TGCCATGACTGAACGGAGGA+GGG + chr1_3:12322510-12322529 Msa0104420:intron 55.0%
TTCCCTCCTCCGTTCAGTCA+TGG - chr1_3:12322515-12322534 None:intergenic 55.0%
AGATGCAGTGGCAGGGTTGA+CGG + chr1_3:12322702-12322721 Msa0104420:intron 55.0%
! GATCCAGCTCTAACGAGACC+TGG + chr1_3:12323620-12323639 Msa0104420:CDS 55.0%
CTACCAGGTCTCGTTAGAGC+TGG - chr1_3:12323626-12323645 None:intergenic 55.0%
TCTTGCCGACCACGTACATC+TGG - chr1_3:12323915-12323934 None:intergenic 55.0%
CGTGGTACCCCAGGATTCAA+TGG + chr1_3:12323999-12324018 Msa0104420:CDS 55.0%
ACCTGCCCCATTGAATCCTG+GGG - chr1_3:12324009-12324028 None:intergenic 55.0%
CACCTGCCCCATTGAATCCT+GGG - chr1_3:12324010-12324029 None:intergenic 55.0%
TCACCTGCCCCATTGAATCC+TGG - chr1_3:12324011-12324030 None:intergenic 55.0%
GATGTGCGCCGTCGGTATTA+AGG - chr1_3:12325489-12325508 None:intergenic 55.0%
AAGGCAACAATCATGCCCCG+TGG + chr1_3:12325517-12325536 Msa0104420:CDS 55.0%
ATGCCCCGTGGATCTGCTTT+AGG + chr1_3:12325529-12325548 Msa0104420:CDS 55.0%
!!! TTGGTGGCCGTTTTGGAGGC+AGG + chr1_3:12317372-12317391 Msa0104420:intron 60.0%
TGAGGCCGATGCGAATCGGT+TGG + chr1_3:12317420-12317439 Msa0104420:CDS 60.0%
AGTGGAGGTGGAGTGCAACC+AGG + chr1_3:12318940-12318959 Msa0104420:intron 60.0%
TGAGAAGCAGCCGTTGCACG+TGG + chr1_3:12320076-12320095 Msa0104420:intron 60.0%
GCAGCCGTTGCACGTGGTTA+TGG + chr1_3:12320082-12320101 Msa0104420:intron 60.0%
CATGTTAACCAGTGCCCCCG+GGG + chr1_3:12320797-12320816 Msa0104420:intron 60.0%
TTCCTTATCCAGTGCCCCGG+GGG - chr1_3:12320814-12320833 None:intergenic 60.0%
TCACTTAACCAGTGCCCCGG+GGG + chr1_3:12320926-12320945 Msa0104420:intron 60.0%
AATGTTAACCGGTGCCCCCG+GGG - chr1_3:12320943-12320962 None:intergenic 60.0%
ACCCCAGGATTCAATGGGGC+AGG + chr1_3:12324005-12324024 Msa0104420:CDS 60.0%
! CTGACTGGGGCACCTGGAAC+TGG + chr1_3:12321759-12321778 Msa0104420:CDS 65.0%
TGCAGTGGCAGGGTTGACGG+TGG + chr1_3:12322705-12322724 Msa0104420:intron 65.0%
GCAATAGCCCGTGGTACCCC+AGG + chr1_3:12323990-12324009 Msa0104420:CDS 65.0%
!! TGCCCCCGGGGCACTGGATA+AGG + chr1_3:12320809-12320828 Msa0104420:intron 70.0%
TGACGGTGGCTGCTCCGCAG+AGG + chr1_3:12322719-12322738 Msa0104420:intron 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr1_3:12320803-12320822 Msa0104420:intron 75.0%
! ATCCAGTGCCCCGGGGGCAC+TGG - chr1_3:12320808-12320827 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr1_3:12320932-12320951 Msa0104420:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr1_3:12320937-12320956 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 12315516 12326977 12315516 ID=Msa0104420;Name=Msa0104420
chr1_3 mRNA 12315516 12326977 12315516 ID=Msa0104420-mRNA-1;Parent=Msa0104420;Name=Msa0104420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.75|0.70|0.94|1|1|17|373|571
chr1_3 exon 12315516 12315521 12315516 ID=Msa0104420-mRNA-1:exon:4909;Parent=Msa0104420-mRNA-1
chr1_3 exon 12317394 12317488 12317394 ID=Msa0104420-mRNA-1:exon:4910;Parent=Msa0104420-mRNA-1
chr1_3 exon 12318709 12318862 12318709 ID=Msa0104420-mRNA-1:exon:4911;Parent=Msa0104420-mRNA-1
chr1_3 exon 12320011 12320087 12320011 ID=Msa0104420-mRNA-1:exon:4912;Parent=Msa0104420-mRNA-1
chr1_3 exon 12320479 12320602 12320479 ID=Msa0104420-mRNA-1:exon:4913;Parent=Msa0104420-mRNA-1
chr1_3 exon 12321232 12321351 12321232 ID=Msa0104420-mRNA-1:exon:4914;Parent=Msa0104420-mRNA-1
chr1_3 exon 12321750 12321800 12321750 ID=Msa0104420-mRNA-1:exon:4915;Parent=Msa0104420-mRNA-1
chr1_3 exon 12322007 12322068 12322007 ID=Msa0104420-mRNA-1:exon:4916;Parent=Msa0104420-mRNA-1
chr1_3 exon 12323203 12323260 12323203 ID=Msa0104420-mRNA-1:exon:4917;Parent=Msa0104420-mRNA-1
chr1_3 exon 12323377 12323502 12323377 ID=Msa0104420-mRNA-1:exon:4918;Parent=Msa0104420-mRNA-1
chr1_3 exon 12323578 12323658 12323578 ID=Msa0104420-mRNA-1:exon:4919;Parent=Msa0104420-mRNA-1
chr1_3 exon 12323897 12324026 12323897 ID=Msa0104420-mRNA-1:exon:4920;Parent=Msa0104420-mRNA-1
chr1_3 exon 12324139 12324287 12324139 ID=Msa0104420-mRNA-1:exon:4921;Parent=Msa0104420-mRNA-1
chr1_3 exon 12325448 12325555 12325448 ID=Msa0104420-mRNA-1:exon:4922;Parent=Msa0104420-mRNA-1
chr1_3 exon 12325565 12325729 12325565 ID=Msa0104420-mRNA-1:exon:4923;Parent=Msa0104420-mRNA-1
chr1_3 exon 12326202 12326255 12326202 ID=Msa0104420-mRNA-1:exon:4924;Parent=Msa0104420-mRNA-1
chr1_3 exon 12326449 12326977 12326449 ID=Msa0104420-mRNA-1:exon:4925;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12315516 12315521 12315516 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12317394 12317488 12317394 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12318709 12318862 12318709 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12320011 12320087 12320011 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12320479 12320602 12320479 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12321232 12321351 12321232 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12321750 12321800 12321750 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12322007 12322068 12322007 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12323203 12323260 12323203 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12323377 12323502 12323377 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12323578 12323658 12323578 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12323897 12324026 12323897 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12324139 12324287 12324139 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12325448 12325555 12325448 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12325565 12325729 12325565 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12326202 12326255 12326202 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 CDS 12326449 12326604 12326449 ID=Msa0104420-mRNA-1:cds;Parent=Msa0104420-mRNA-1
chr1_3 three_prime_UTR 12326605 12326977 12326605 ID=Msa0104420-mRNA-1:three_prime_utr;Parent=Msa0104420-mRNA-1
Gene Sequence

>Msa0104420

ATGTATGAGAAGAAATTGGCGAAGTTGATTACTGAGGCCGATGCGAATCGGTTGGATGCTGCTAAGCAGACTGCTCTTTTTGTTGAGCTTAATAAGCACAGTCCTGAGTCTGTGATAAAGATATTTGAAGAAAGGGACAGAGCTGTGGACAGTAGAGGAGTTGCAGAATATCTTCGAGCACTAGTGGTCACTAATGCTATTGCAGAATATCTTCCTGATGAGGAATCTGGAAAACCTTCTGGAATTCCCACCTTGTTGCAAGAGTTGAAACAGCGGGCATCTGGTAACATAGATGAGACTTTTCTGAACCCTGGAATATCTGAGAAGCAGCCGTTTATGGGTGCTGCTGCACTTCAAAAATACATCGGAAGCTTGGGTGGGATTGGTTCTTCAGGTGTTGGTTCAAGTTCATCTTATACCCCAAAGGAGCTAAACAAGGAAGTGATGCCAGAAAAGAATGTAAAAACTTTTAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAGGTTGTGGAGTACCTAAAAAATCCAGCTAAATTTACTCGCCTTGGAGGAAAGCTGCCAAAGGGGATTCTTCTGACTGGGGCACCTGGAACTGGAAAAACTCTGCTAGCCAAGGCTATTGCTGGAGAAGCCGGTGTTCCATTTTTCTATCGTGCCGGTTCGGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGGCGTGTAAGATCGTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGCATTATTTTCATTGATGAAATTGATGCCGTTGGATCAACTAGGAAACAGTGGGAGGGCCACACCAAGAAGACATTGCACCAACTTCTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCTGCAACAAACTTGCCTGATATTCTTGATCCAGCTCTAACGAGACCTGGTAGATTTGATCGACATATTGTTGTACCAAATCCAGATGTACGTGGTCGGCAAGAAATATTGGAACTCTACCTGCATGATAAACCTACAGCCGATAATGTAGATATTAAAGCAATAGCCCGTGGTACCCCAGGATTCAATGGGGCAGATCTGGCAAACCTGGTGAACATTGCTGCTATTAAAGCTGCGGTTGAAGGTGCAGAGAAATTAACAGCTTCTCAGTTGGAGTTTGCAAAAGACCGAATAATTATGGGTACAGAGCGAAAAACAATGTTTGTATCGGAGGAGTCAAAAAAGCTTACTGCTTATCATGAGAGCGGCCATGCAATTGTTGCCCTTAATACCGACGGCGCACATCCAATTCACAAGGCAACAATCATGCCCCGTGGATCTGCTTTAGGAATGCTTCCCTCAAATGATGAGACATCAATAAGTAAGAAGCAGTTGTTAGCTCGTCTTGATGTTTGTATGGGAGGACGAGTTGCAGAAGAACTTATCTTTGGTCGGGATAATGTCACAACTGGAGCTAGTAGTGATCTTCAATCAGCTACCGAGCTTGCGCAATACATGGTTGTTAAACTCCTTAGAGATGCATATGATCGTGTGAAAGCTCTTCTGAAGAAGCATGAGAAGGCATTACATACATTGGCAAATGCATTATTAGAGTGTGAGACACTTAGTGCAGAAGAAATCAGACGATTACTTCTCCCGTATCGGGAAGGAAAACTTCCAGAACAACAGGAACAAGAAGAAGCAGAAGGGGATCTTGTATTGGCGTAA
Protein sequence

>Msa0104420

MYEKKLAKLITEADANRLDAAKQTALFVELNKHSPESVIKIFEERDRAVDSRGVAEYLRALVVTNAIAEYLPDEESGKPSGIPTLLQELKQRASGNIDETFLNPGISEKQPFMGAAALQKYIGSLGGIGSSGVGSSSSYTPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLHDKPTADNVDIKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTASQLEFAKDRIIMGTERKTMFVSEESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMLPSNDETSISKKQLLARLDVCMGGRVAEELIFGRDNVTTGASSDLQSATELAQYMVVKLLRDAYDRVKALLKKHEKALHTLANALLECETLSAEEIRRLLLPYREGKLPEQQEQEEAEGDLVLA*