AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476890 MtrunA17_Chr3g0137531 96.899 129 3 1 127 254 1 129 4.88e-83 244
Msa0476890 MtrunA17_Chr3g0137531 72.441 127 30 2 1 125 1 124 3.47e-42 140
Msa0476890 MtrunA17_Chr3g0137521 98.400 125 2 0 1 125 1 125 4.17e-79 234
Msa0476890 MtrunA17_Chr3g0137521 74.615 130 29 2 127 253 1 129 1.41e-54 172
Msa0476890 MtrunA17_Chr1g0149481 56.627 166 32 4 127 254 1 164 1.39e-47 155
Msa0476890 MtrunA17_Chr1g0149481 57.862 159 31 3 1 124 1 158 2.93e-47 154
Msa0476890 MtrunA17_Chr1g0149491 59.477 153 35 3 127 254 1 151 4.59e-43 143
Msa0476890 MtrunA17_Chr1g0149491 59.589 146 36 2 1 124 1 145 1.10e-41 140
Msa0476890 MtrunA17_Chr1g0149471 79.762 84 16 1 171 254 128 210 1.47e-39 136
Msa0476890 MtrunA17_Chr1g0149471 78.481 79 16 1 46 124 127 204 1.26e-34 123
Msa0476890 MtrunA17_Chr4g0060391 50.000 120 58 2 135 254 6 123 1.95e-31 112
Msa0476890 MtrunA17_Chr4g0060391 52.137 117 51 2 8 124 6 117 9.84e-31 110
Msa0476890 MtrunA17_Chr2g0290521 61.538 104 37 3 21 122 18 120 4.03e-31 112
Msa0476890 MtrunA17_Chr2g0290521 55.670 97 41 2 157 253 32 126 4.55e-26 99.0
Msa0476890 MtrunA17_Chr4g0056371 51.639 122 53 3 8 124 6 126 1.17e-29 108
Msa0476890 MtrunA17_Chr4g0056371 63.095 84 30 1 171 254 50 132 2.02e-29 107
Msa0476890 MtrunA17_Chr4g0056391 56.818 88 36 2 168 254 57 143 5.63e-27 101
Msa0476890 MtrunA17_Chr4g0056391 63.415 82 28 2 44 124 57 137 5.81e-27 101
Msa0476890 MtrunA17_Chr4g0056411 40.000 170 57 6 127 253 1 168 2.37e-26 100
Msa0476890 MtrunA17_Chr4g0056411 64.198 81 27 2 45 124 84 163 4.93e-26 100
Msa0476890 MtrunA17_Chr4g0056401 57.647 85 34 2 171 254 51 134 5.08e-26 99.0
Msa0476890 MtrunA17_Chr4g0056401 60.000 80 30 2 46 124 50 128 2.81e-25 97.1
Msa0476890 MtrunA17_Chr5g0399081 47.619 84 41 2 171 253 95 176 2.58e-21 88.2
Msa0476890 MtrunA17_Chr5g0399081 43.902 82 43 2 44 124 92 171 2.60e-18 80.1
Msa0476890 MtrunA17_Chr4g0056381 57.143 84 33 3 171 253 105 186 6.17e-21 87.0
Msa0476890 MtrunA17_Chr4g0056381 57.500 80 31 3 47 125 105 182 6.82e-19 81.6
Msa0476890 MtrunA17_Chr5g0399091 46.429 84 42 2 171 253 88 169 1.08e-20 86.3
Msa0476890 MtrunA17_Chr5g0399091 42.683 82 44 2 44 124 85 164 1.01e-17 78.2
Msa0476890 MtrunA17_Chr2g0290571 48.750 80 38 2 174 253 122 198 2.71e-15 72.4
Msa0476890 MtrunA17_Chr2g0290571 45.333 75 38 2 50 124 122 193 4.77e-13 66.2
Msa0476890 MtrunA17_Chr3g0120411 46.512 86 45 1 168 253 251 335 2.17e-14 71.6
Msa0476890 MtrunA17_Chr3g0120411 43.210 81 45 1 44 124 251 330 7.72e-11 61.2
Msa0476890 MtrunA17_Chr2g0290561 46.250 80 40 1 174 253 118 194 4.65e-14 68.9
Msa0476890 MtrunA17_Chr2g0290561 43.421 76 40 1 50 125 118 190 2.47e-13 67.0
Msa0476890 MtrunA17_Chr2g0290531 41.772 79 40 3 178 254 186 260 3.30e-11 62.0
Msa0476890 MtrunA17_Chr2g0290531 47.945 73 32 3 54 124 186 254 3.50e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476890 AT2G45180.1 69.048 84 25 1 171 254 52 134 2.97e-32 115
Msa0476890 AT2G45180.1 74.074 81 20 1 44 124 49 128 1.55e-31 113
Msa0476890 AT4G12500.1 39.326 178 57 4 127 254 1 177 2.36e-30 112
Msa0476890 AT4G12500.1 64.634 82 27 2 44 124 91 171 5.79e-27 103
Msa0476890 AT4G12490.1 60.000 95 36 2 161 254 89 182 4.64e-30 111
Msa0476890 AT4G12490.1 41.243 177 50 4 1 124 1 176 1.42e-27 104
Msa0476890 AT4G12480.1 60.920 87 32 2 169 254 83 168 4.39e-29 108
Msa0476890 AT4G12480.1 63.415 82 28 2 44 124 82 162 2.53e-26 101
Msa0476890 AT4G12470.1 58.889 90 35 2 166 254 73 161 5.33e-29 107
Msa0476890 AT4G12470.1 60.000 85 32 2 42 125 73 156 6.76e-26 99.8
Msa0476890 AT5G46900.1 64.835 91 28 3 164 254 41 127 2.46e-28 105
Msa0476890 AT5G46900.1 70.238 84 21 3 41 124 42 121 1.89e-26 100
Msa0476890 AT4G12520.1 52.941 119 54 2 137 254 12 129 3.90e-28 104
Msa0476890 AT4G12520.1 53.968 126 53 5 1 124 1 123 1.14e-25 98.2
Msa0476890 AT4G12510.1 52.941 119 54 2 137 254 12 129 3.90e-28 104
Msa0476890 AT4G12510.1 53.968 126 53 5 1 124 1 123 1.14e-25 98.2
Msa0476890 AT1G62510.1 61.176 85 31 2 170 253 66 149 1.36e-27 103
Msa0476890 AT1G62510.1 67.500 80 24 2 46 124 66 144 2.20e-27 103
Msa0476890 AT5G46890.1 52.000 125 51 5 135 254 7 127 5.09e-27 101
Msa0476890 AT5G46890.1 54.762 126 50 5 1 124 1 121 3.28e-26 99.8
Msa0476890 AT4G00165.1 54.545 99 41 3 29 124 26 123 8.27e-27 101
Msa0476890 AT4G00165.1 47.664 107 49 3 153 253 23 128 1.38e-24 95.5
Msa0476890 AT4G00165.2 54.545 99 41 3 29 124 26 123 8.27e-27 101
Msa0476890 AT4G00165.2 47.664 107 49 3 153 253 23 128 1.38e-24 95.5
Msa0476890 AT1G12090.1 62.195 82 29 2 173 253 57 137 1.26e-26 100
Msa0476890 AT1G12090.1 66.667 78 24 2 49 125 57 133 7.77e-26 99.0
Msa0476890 AT4G22460.1 54.639 97 44 0 25 121 28 124 7.91e-26 99.0
Msa0476890 AT4G22460.1 48.077 104 49 2 154 252 28 131 6.04e-23 91.3
Msa0476890 AT1G12100.1 44.628 121 61 4 7 124 9 126 2.16e-25 97.8
Msa0476890 AT1G12100.1 47.525 101 50 3 156 254 33 132 8.70e-23 90.9
Msa0476890 AT4G12550.1 50.000 92 44 2 164 254 21 111 2.77e-24 94.0
Msa0476890 AT4G12550.1 56.790 81 33 2 45 124 26 105 8.27e-24 92.8
Msa0476890 AT4G12530.1 50.000 86 42 1 168 253 31 115 1.72e-21 87.0
Msa0476890 AT4G12530.1 45.679 81 43 1 44 124 31 110 4.81e-17 75.1
Msa0476890 AT4G12545.1 50.000 92 41 3 164 254 21 108 2.52e-21 86.3
Msa0476890 AT4G12545.1 56.790 81 30 3 45 124 26 102 1.48e-20 84.3
Msa0476890 AT3G22142.1 52.381 84 37 3 171 253 1397 1478 3.68e-19 87.0
Msa0476890 AT3G22142.1 56.944 72 27 3 47 116 1397 1466 6.42e-17 80.5
Msa0476890 AT2G10940.2 55.422 83 34 3 44 125 205 285 1.70e-17 80.5
Msa0476890 AT2G10940.2 47.727 88 43 3 168 254 205 290 2.92e-17 79.7
Msa0476890 AT2G10940.1 55.422 83 34 3 44 125 205 285 1.70e-17 80.5
Msa0476890 AT2G10940.1 47.727 88 43 3 168 254 205 290 2.92e-17 79.7
Msa0476890 AT3G22120.2 51.190 84 39 2 171 253 267 349 1.99e-17 80.9
Msa0476890 AT3G22120.2 49.367 79 38 2 47 124 267 344 1.86e-14 72.4
Msa0476890 AT3G22120.1 51.190 84 39 2 171 253 250 332 4.11e-17 79.7
Msa0476890 AT3G22120.1 49.367 79 38 2 47 124 250 327 3.47e-14 71.6
Msa0476890 AT4G15160.2 49.412 85 40 3 171 253 99 182 1.07e-15 73.6
Msa0476890 AT4G15160.2 48.750 80 39 2 47 125 99 177 7.04e-15 71.2
Msa0476890 AT4G15160.1 49.412 85 40 3 171 253 181 264 2.82e-15 73.9
Msa0476890 AT4G15160.1 48.750 80 39 2 47 125 181 259 2.31e-14 71.2
Msa0476890 AT4G22490.1 38.043 92 53 3 163 253 28 116 9.54e-14 66.6
Msa0476890 AT4G22490.1 31.818 88 57 2 37 124 27 111 8.32e-11 58.5
Msa0476890 AT1G62500.1 42.529 87 47 3 168 253 209 293 1.40e-13 69.3
Msa0476890 AT1G62500.1 43.056 72 39 2 47 117 212 282 9.06e-12 64.3
Msa0476890 AT4G22470.1 23.223 211 150 5 45 253 174 374 1.55e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAACTTTAAGGTATCTT+TGG 0.166346 3_3:-80792335 None:intergenic
TAAATGTTGTGCATTGATTA+AGG 0.202840 3_3:+80789497 Msa0476890:CDS
AGCACAAACCCCTAACTTTA+AGG 0.205248 3_3:-80792344 None:intergenic
ATCTTTGGGGCAGTGACCTT+GGG 0.214560 3_3:-80792320 None:intergenic
AGCACAAACCCCTAGCTTTA+AGG 0.218235 3_3:-80789424 None:intergenic
TTGTCTTTGCACTGCAATTA+AGG 0.231170 3_3:+80792465 Msa0476890:CDS
AATCAAAGGTTTGGCTGATT+TGG 0.237754 3_3:+80792432 Msa0476890:CDS
GGGTTGGTTAATGTTGTTAT+TGG 0.240421 3_3:+80789456 Msa0476890:CDS
TCCTTAGGGCATTGACCTTT+GGG 0.253417 3_3:-80789399 None:intergenic
ATCCTTAGGGCATTGACCTT+TGG 0.263717 3_3:-80789400 None:intergenic
TAAAATGGTGGCAAAGAATT+TGG 0.290687 3_3:-80792212 None:intergenic
CCTAACTTTAAGGTATCTTT+GGG 0.293316 3_3:-80792334 None:intergenic
GATTAAGGGTTTGGCTGATT+TGG 0.309202 3_3:+80789512 Msa0476890:CDS
AAGAGAAAGCACTAAAATTA+AGG 0.315935 3_3:-80789295 None:intergenic
GAAGGTGTTGGCTTTGGCTT+TGG 0.321243 3_3:-80792295 None:intergenic
TGGGGTGAAGGTGTTGGCTT+TGG 0.321997 3_3:-80792301 None:intergenic
CCCAAAGATACCTTAAAGTT+AGG 0.331524 3_3:+80792334 Msa0476890:CDS
TTGTCTTTGCACTGCACTTA+AGG 0.338630 3_3:+80789545 Msa0476890:CDS
CCTAGCTTTAAGGTATCCTT+AGG 0.341849 3_3:-80789414 None:intergenic
AAATGTTGTGCATTGATTAA+GGG 0.358491 3_3:+80789498 Msa0476890:CDS
TATCTTTGGGGCAGTGACCT+TGG 0.380498 3_3:-80792321 None:intergenic
CCAAAGATACCTTAAAGTTA+GGG 0.385359 3_3:+80792335 Msa0476890:CDS
AGGATCCAGGTGAGGGTGAT+AGG 0.388310 3_3:-80792517 None:intergenic
GGGCAGTGACCTTGGGGTGA+AGG 0.389809 3_3:-80792313 None:intergenic
AAGGAGAGAGAGTACTAAAA+TGG 0.390388 3_3:-80792227 None:intergenic
ATCACCCTCACCTGGATCCT+TGG 0.406696 3_3:+80792520 Msa0476890:CDS
GTTGTTGGGAATCCTGCTTC+AGG 0.413980 3_3:+80792391 Msa0476890:CDS
GAAGGTGTTGGCTTTGGTGA+TGG 0.414445 3_3:-80789354 None:intergenic
CTCAACATTTACTGAGGCTA+AGG 0.420857 3_3:+80792255 Msa0476890:CDS
CCTTTGGGTGAAGGTGGAAC+AGG 0.427685 3_3:-80789384 None:intergenic
GTTATTGGAAACCCTCCTTC+AGG 0.428430 3_3:+80789471 Msa0476890:CDS
TTGTGCATTGATTAAGGGTT+TGG 0.429971 3_3:+80789503 Msa0476890:CDS
AGGAGCACGCTGAGCGTGAT+AGG 0.432511 3_3:-80789597 None:intergenic
GGGCATTGACCTTTGGGTGA+AGG 0.436950 3_3:-80789393 None:intergenic
AATTAAGGCAGAGAATTTGT+TGG 0.438270 3_3:-80789280 None:intergenic
TTGACAAGCACCAAGGATCC+AGG 0.457767 3_3:-80792530 None:intergenic
GCAGGTGAAGGTGTTGGCTT+TGG 0.458002 3_3:-80789360 None:intergenic
GACTGGTTAATGTTGTTGTT+GGG 0.463209 3_3:+80792377 Msa0476890:CDS
TAAGGGTTTGGCTGATTTGG+AGG 0.464987 3_3:+80789515 Msa0476890:CDS
GTTGGCTTTGGCTTTGGTGA+TGG 0.465834 3_3:-80792289 None:intergenic
TTGTGCAATAATCAAAGGTT+TGG 0.466120 3_3:+80792423 Msa0476890:CDS
GGACTGGTTAATGTTGTTGT+TGG 0.480624 3_3:+80792376 Msa0476890:CDS
GGTGAAGGTGGAACAGGAGC+AGG 0.481606 3_3:-80789378 None:intergenic
GCACTTAAGGCTAATGTGCT+TGG 0.487972 3_3:+80789558 Msa0476890:CDS
TGACCTTGGGGTGAAGGTGT+TGG 0.502306 3_3:-80792307 None:intergenic
CCTAAGGATACCTTAAAGCT+AGG 0.505679 3_3:+80789414 Msa0476890:CDS
CTAAGGATACCTTAAAGCTA+GGG 0.512185 3_3:+80789415 Msa0476890:CDS
GGTGTTGGCTTTGGTGATGG+TGG 0.522065 3_3:-80789351 None:intergenic
AATTGTTGTGCAATAATCAA+AGG 0.523157 3_3:+80792418 Msa0476890:CDS
GCAATTAAGGCCAATGTGCT+CGG 0.533371 3_3:+80792478 Msa0476890:CDS
CATTGACCTTTGGGTGAAGG+TGG 0.538821 3_3:-80789390 None:intergenic
TCTTTGGGGCAGTGACCTTG+GGG 0.545751 3_3:-80792319 None:intergenic
CCTTAGGCACATTGAAAACC+AGG 0.555069 3_3:-80792565 None:intergenic
CAAAGATACCTTAAAGTTAG+GGG 0.560461 3_3:+80792336 Msa0476890:CDS
ACATTGGAAACCAGGAGGGA+CGG 0.567925 3_3:-80789637 None:intergenic
CCTGTTCCACCTTCACCCAA+AGG 0.572122 3_3:+80789384 Msa0476890:CDS
CTAGCTTTAAGGTATCCTTA+GGG 0.574702 3_3:-80789413 None:intergenic
AACATTTACTACCTGAAGGA+GGG 0.575828 3_3:-80789482 None:intergenic
ACAGGAGCAGGTGAAGGTGT+TGG 0.576951 3_3:-80789366 None:intergenic
TGATGGTGGACAATTAGCTT+CGG 0.580942 3_3:-80789337 None:intergenic
ACCCAAAGGTCAATGCCCTA+AGG 0.586732 3_3:+80789398 Msa0476890:CDS
ATGTACCTATCACCCTCACC+TGG 0.591606 3_3:+80792512 Msa0476890:CDS
CAGTAAATGTTGAGTAAGCA+AGG 0.592270 3_3:-80792246 None:intergenic
GGTGGAACAGGAGCAGGTGA+AGG 0.595926 3_3:-80789372 None:intergenic
AGCTTCGGTGAATGTTGAGT+AGG 0.595958 3_3:-80789322 None:intergenic
TCAACATTTACTGAGGCTAA+GGG 0.596026 3_3:+80792256 Msa0476890:CDS
CAAGTTTATTCCGAGCACAT+TGG 0.596849 3_3:-80792488 None:intergenic
GGTGGCAAAGAATTTGGTGT+TGG 0.599992 3_3:-80792206 None:intergenic
CAACAATTACTACCTGAAGC+AGG 0.602543 3_3:-80792403 None:intergenic
CAACATTTACTACCTGAAGG+AGG 0.605436 3_3:-80789483 None:intergenic
AGCACCAAGGATCCAGGTGA+GGG 0.612333 3_3:-80792524 None:intergenic
AAGCCAACACCTTCACCCCA+AGG 0.614009 3_3:+80792304 Msa0476890:CDS
TGCTTACTCAACATTTACTG+AGG 0.622636 3_3:+80792249 Msa0476890:CDS
GCACAACATTTACTACCTGA+AGG 0.630292 3_3:-80789486 None:intergenic
GAGAGAGAGTACTAAAATGG+TGG 0.630559 3_3:-80792224 None:intergenic
AAGCACCAAGGATCCAGGTG+AGG 0.645068 3_3:-80792525 None:intergenic
TAAGGATACCTTAAAGCTAG+GGG 0.646982 3_3:+80789416 Msa0476890:CDS
AGGGACATTGGAAACCAGGA+GGG 0.669232 3_3:-80789641 None:intergenic
AGGCACATTGAAAACCAGGA+GGG 0.674973 3_3:-80792561 None:intergenic
CTAACTTTAAGGTATCTTTG+GGG 0.708820 3_3:-80792333 None:intergenic
TAGGCACATTGAAAACCAGG+AGG 0.727521 3_3:-80792562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGTTTTATTAATTTATAT+GGG - chr3_3:80789834-80789853 None:intergenic 10.0%
!! AAATGAATATAAGATAATTT+AGG - chr3_3:80790040-80790059 None:intergenic 10.0%
!!! TGATTTTTAATTAATTGATT+TGG + chr3_3:80791008-80791027 Msa0476890:intron 10.0%
!!! TGTAACATTTTTTATGTTAT+CGG + chr3_3:80789775-80789794 Msa0476890:intron 15.0%
!!! GTACGTTTTATTAATTTATA+TGG - chr3_3:80789835-80789854 None:intergenic 15.0%
!!! GCAAAACTTTTTTTTATTAT+TGG - chr3_3:80789869-80789888 None:intergenic 15.0%
!!! AATAAAAAAAAGTTTTGCAA+AGG + chr3_3:80789871-80789890 Msa0476890:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+GGG - chr3_3:80790144-80790163 None:intergenic 15.0%
!!! AGTTTTTTTTGCTTATAATT+TGG - chr3_3:80790145-80790164 None:intergenic 15.0%
!!! AACTTTTTTGCTTATAATAT+GGG - chr3_3:80790180-80790199 None:intergenic 15.0%
!!! AAACTTTTTTGCTTATAATA+TGG - chr3_3:80790181-80790200 None:intergenic 15.0%
!!! TTTTTTCTTATAATTTAGGA+TGG + chr3_3:80790419-80790438 Msa0476890:intron 15.0%
!!! CTTAATTATTTTGCTTTTTT+TGG - chr3_3:80790559-80790578 None:intergenic 15.0%
!! CAAAAAAAGCAAAATAATTA+AGG + chr3_3:80790557-80790576 Msa0476890:intron 15.0%
!! TAAAATAATAGATAGTTATG+TGG + chr3_3:80790588-80790607 Msa0476890:intron 15.0%
!!! ATTTTTAGAAATAGATGTTA+TGG - chr3_3:80790854-80790873 None:intergenic 15.0%
!!! ATTTGGTAAAATATTGATTT+TGG + chr3_3:80791025-80791044 Msa0476890:intron 15.0%
!! TTAAGTATAAAAATCATGTT+TGG + chr3_3:80791118-80791137 Msa0476890:intron 15.0%
!!! TTTTTTTTTTTTTGGTTACA+AGG - chr3_3:80791288-80791307 None:intergenic 15.0%
!!! GTTTTCGTTTTTTTTTTTTT+TGG - chr3_3:80791296-80791315 None:intergenic 15.0%
!!! AAAAATGAGTTGTAATATTT+TGG - chr3_3:80792002-80792021 None:intergenic 15.0%
!!! TTTTGGTCAAACTAATAATT+TGG + chr3_3:80790002-80790021 Msa0476890:intron 20.0%
!! GATGTAAAAACAATTTGTAT+TGG - chr3_3:80790316-80790335 None:intergenic 20.0%
!! TTTCTATGAAACTTATTTCA+AGG + chr3_3:80790336-80790355 Msa0476890:intron 20.0%
!! ATGAACTTCTAATGATAAAA+CGG - chr3_3:80791663-80791682 None:intergenic 20.0%
!! ATATCATCTCATAGATAAAA+TGG + chr3_3:80791924-80791943 Msa0476890:intron 20.0%
!! AGATAATAACAAATGAGAAA+AGG + chr3_3:80791957-80791976 Msa0476890:intron 20.0%
!!! ATTGCTACATTTAATTTGTA+AGG + chr3_3:80792164-80792183 Msa0476890:intron 20.0%
!!! AAGAGAAAGCACTAAAATTA+AGG - chr3_3:80789298-80789317 None:intergenic 25.0%
!!! TAAATGTTGTGCATTGATTA+AGG + chr3_3:80789497-80789516 Msa0476890:CDS 25.0%
!!! AAATGTTGTGCATTGATTAA+GGG + chr3_3:80789498-80789517 Msa0476890:CDS 25.0%
!! AAAAAAGTTTTGCAAAGGAA+TGG + chr3_3:80789876-80789895 Msa0476890:intron 25.0%
!! TCAAAAAATCATCTTTTCCA+AGG + chr3_3:80790229-80790248 Msa0476890:intron 25.0%
!! AATTGCATTTAATTTCTCCT+TGG - chr3_3:80790249-80790268 None:intergenic 25.0%
!! TTTCTTATAATTTAGGATGG+AGG + chr3_3:80790422-80790441 Msa0476890:intron 25.0%
!! TTCTTATAATTTAGGATGGA+GGG + chr3_3:80790423-80790442 Msa0476890:intron 25.0%
!! TTATGTGGTCTTTCTTTTAA+GGG + chr3_3:80790603-80790622 Msa0476890:intron 25.0%
! TTATTAAAAAGCTTCTGAGT+TGG - chr3_3:80790694-80790713 None:intergenic 25.0%
! AGTTTCCCATATCAAATTTA+AGG + chr3_3:80790776-80790795 Msa0476890:intron 25.0%
! GTTTCCCATATCAAATTTAA+GGG + chr3_3:80790777-80790796 Msa0476890:intron 25.0%
! CATACCCTTAAATTTGATAT+GGG - chr3_3:80790784-80790803 None:intergenic 25.0%
! ACATACCCTTAAATTTGATA+TGG - chr3_3:80790785-80790804 None:intergenic 25.0%
!! TCAAATTTAAGGGTATGTTT+AGG + chr3_3:80790787-80790806 Msa0476890:intron 25.0%
! TTTAGGTAAGTTTGATTGAT+TGG - chr3_3:80790909-80790928 None:intergenic 25.0%
!!! TCCTCTTTTAAAATTGATTG+CGG - chr3_3:80790933-80790952 None:intergenic 25.0%
! AAAGTTAGTTAAAAGTGAAC+TGG + chr3_3:80791051-80791070 Msa0476890:intron 25.0%
!!! AGTATATTTTAATTTCACCG+TGG - chr3_3:80791342-80791361 None:intergenic 25.0%
!! ATTGCATGATTTTGTATGTT+TGG - chr3_3:80791458-80791477 None:intergenic 25.0%
! TTTGAATTTGAATCCTTAGA+GGG - chr3_3:80791576-80791595 None:intergenic 25.0%
!!! AAGCCAATACAATTGATTTT+TGG + chr3_3:80791795-80791814 Msa0476890:intron 25.0%
!!! AGCCAATACAATTGATTTTT+GGG + chr3_3:80791796-80791815 Msa0476890:intron 25.0%
!!! ATTTGTGTTGCCTTTAAAAT+AGG + chr3_3:80792109-80792128 Msa0476890:intron 25.0%
!!! AATGAGTGAACCTATTTTAA+AGG - chr3_3:80792122-80792141 None:intergenic 25.0%
! AATTGTTGTGCAATAATCAA+AGG + chr3_3:80792418-80792437 Msa0476890:CDS 25.0%
AATTAAGGCAGAGAATTTGT+TGG - chr3_3:80789283-80789302 None:intergenic 30.0%
TAAAACAATGACAATGACAG+TGG - chr3_3:80789923-80789942 None:intergenic 30.0%
! GTAGATTTCTTAACGTGTTT+TGG + chr3_3:80789985-80790004 Msa0476890:intron 30.0%
TTTGCTTATAATATGGGACA+AGG - chr3_3:80790174-80790193 None:intergenic 30.0%
! TTCTGTTTTACTAAGTAGCT+TGG + chr3_3:80790495-80790514 Msa0476890:intron 30.0%
! GTTATGTGGTCTTTCTTTTA+AGG + chr3_3:80790602-80790621 Msa0476890:intron 30.0%
!! ATGTTTAGGTTGATGGTATA+AGG + chr3_3:80790801-80790820 Msa0476890:intron 30.0%
TTAAAATTGATTGCGGCTTT+AGG - chr3_3:80790926-80790945 None:intergenic 30.0%
AAAAGTGAAATGTGTAGCTT+TGG - chr3_3:80791147-80791166 None:intergenic 30.0%
!! AAGTTGTAGTTTGTAGCTTT+TGG + chr3_3:80791380-80791399 Msa0476890:intron 30.0%
!! AGTTGTAGTTTGTAGCTTTT+GGG + chr3_3:80791381-80791400 Msa0476890:intron 30.0%
!! TTTTGGGAAAACACTGAAAA+TGG + chr3_3:80791397-80791416 Msa0476890:intron 30.0%
TTCCGCATGAGAAAAAAATA+TGG + chr3_3:80791479-80791498 Msa0476890:intron 30.0%
TCCGCATGAGAAAAAAATAT+GGG + chr3_3:80791480-80791499 Msa0476890:intron 30.0%
!!! TCCCATATTTTTTTCTCATG+CGG - chr3_3:80791484-80791503 None:intergenic 30.0%
GTTTGAATTTGAATCCTTAG+AGG - chr3_3:80791577-80791596 None:intergenic 30.0%
!!! AGTTTTGGATTTGAAAGTCA+CGG - chr3_3:80791638-80791657 None:intergenic 30.0%
! AATGATAAAACGGCAAGTTT+TGG - chr3_3:80791653-80791672 None:intergenic 30.0%
!! ATTGTATTGGCTTGATCAAA+CGG - chr3_3:80791788-80791807 None:intergenic 30.0%
CACCCAAAAATCAATTGTAT+TGG - chr3_3:80791801-80791820 None:intergenic 30.0%
CTGTAAAAGAACATGTTTGT+TGG - chr3_3:80791830-80791849 None:intergenic 30.0%
TCATCTCATAGATAAAATGG+TGG + chr3_3:80791927-80791946 Msa0476890:intron 30.0%
CATCTCATAGATAAAATGGT+GGG + chr3_3:80791928-80791947 Msa0476890:intron 30.0%
TTCCACTCAATTAGATTTCT+AGG + chr3_3:80792074-80792093 Msa0476890:intron 30.0%
AACCTAGAAATCTAATTGAG+TGG - chr3_3:80792079-80792098 None:intergenic 30.0%
TAAAGGCAACACAAATTGTA+AGG - chr3_3:80792105-80792124 None:intergenic 30.0%
AAATGTAGCAATATGTGTGT+TGG - chr3_3:80792156-80792175 None:intergenic 30.0%
TGTAAGGTAAACTATAGTCA+TGG + chr3_3:80792180-80792199 Msa0476890:intron 30.0%
TAAAATGGTGGCAAAGAATT+TGG - chr3_3:80792215-80792234 None:intergenic 30.0%
!! CTAACTTTAAGGTATCTTTG+GGG - chr3_3:80792336-80792355 None:intergenic 30.0%
!! CCTAACTTTAAGGTATCTTT+GGG - chr3_3:80792337-80792356 None:intergenic 30.0%
CCAAAGATACCTTAAAGTTA+GGG + chr3_3:80792335-80792354 Msa0476890:CDS 30.0%
CAAAGATACCTTAAAGTTAG+GGG + chr3_3:80792336-80792355 Msa0476890:CDS 30.0%
TTGTGCAATAATCAAAGGTT+TGG + chr3_3:80792423-80792442 Msa0476890:CDS 30.0%
!! CTAGCTTTAAGGTATCCTTA+GGG - chr3_3:80789416-80789435 None:intergenic 35.0%
CTAAGGATACCTTAAAGCTA+GGG + chr3_3:80789415-80789434 Msa0476890:CDS 35.0%
TAAGGATACCTTAAAGCTAG+GGG + chr3_3:80789416-80789435 Msa0476890:CDS 35.0%
!! GGGTTGGTTAATGTTGTTAT+TGG + chr3_3:80789456-80789475 Msa0476890:CDS 35.0%
AACATTTACTACCTGAAGGA+GGG - chr3_3:80789485-80789504 None:intergenic 35.0%
!! TTGTGCATTGATTAAGGGTT+TGG + chr3_3:80789503-80789522 Msa0476890:CDS 35.0%
CAACCTAATTGGAATCCTTA+GGG - chr3_3:80789663-80789682 None:intergenic 35.0%
ACAACCTAATTGGAATCCTT+AGG - chr3_3:80789664-80789683 None:intergenic 35.0%
ACAATGAGACACAACCTAAT+TGG - chr3_3:80789674-80789693 None:intergenic 35.0%
! TGCTTATAATTTGGGACAGA+GGG - chr3_3:80790136-80790155 None:intergenic 35.0%
! TTGCTTATAATTTGGGACAG+AGG - chr3_3:80790137-80790156 None:intergenic 35.0%
! AAAAAGCTTCTGAGTTGGAT+TGG - chr3_3:80790689-80790708 None:intergenic 35.0%
!! TAAGGGTATGTTTAGGTTGA+TGG + chr3_3:80790794-80790813 Msa0476890:intron 35.0%
!! TTTAGGTTGATGGTATAAGG+TGG + chr3_3:80790804-80790823 Msa0476890:intron 35.0%
GAAATAGAGCTGAGTGAAAT+AGG - chr3_3:80790885-80790904 None:intergenic 35.0%
!! GCCGCAATCAATTTTAAAAG+AGG + chr3_3:80790929-80790948 Msa0476890:intron 35.0%
AAAGTGAACTGGACTATGTT+TGG + chr3_3:80791062-80791081 Msa0476890:intron 35.0%
! GTTGTCTGAAATGCTTATGT+TGG + chr3_3:80791246-80791265 Msa0476890:intron 35.0%
TGGAAACAAACATGCATCTA+AGG - chr3_3:80791322-80791341 None:intergenic 35.0%
TAGATGCATGTTTGTTTCCA+CGG + chr3_3:80791322-80791341 Msa0476890:intron 35.0%
GAAAACACTGAAAATGGTTG+TGG + chr3_3:80791403-80791422 Msa0476890:intron 35.0%
!! ATATGGGACATCGATTTCTA+TGG + chr3_3:80791496-80791515 Msa0476890:intron 35.0%
!! TATGGGACATCGATTTCTAT+GGG + chr3_3:80791497-80791516 Msa0476890:intron 35.0%
AATGCAAAGAAAACCCTCTA+AGG + chr3_3:80791560-80791579 Msa0476890:intron 35.0%
! AGAAGTTTTCTCCACTTTCA+TGG - chr3_3:80791606-80791625 None:intergenic 35.0%
!! TCATAGATAAAATGGTGGGT+GGG + chr3_3:80791932-80791951 Msa0476890:intron 35.0%
! TTTGTGATAACGTTTCCAGT+CGG - chr3_3:80792045-80792064 None:intergenic 35.0%
!! AAGGAGAGAGAGTACTAAAA+TGG - chr3_3:80792230-80792249 None:intergenic 35.0%
CAGTAAATGTTGAGTAAGCA+AGG - chr3_3:80792249-80792268 None:intergenic 35.0%
TGCTTACTCAACATTTACTG+AGG + chr3_3:80792249-80792268 Msa0476890:CDS 35.0%
TCAACATTTACTGAGGCTAA+GGG + chr3_3:80792256-80792275 Msa0476890:CDS 35.0%
CCCAAAGATACCTTAAAGTT+AGG + chr3_3:80792334-80792353 Msa0476890:CDS 35.0%
!! CCCTAACTTTAAGGTATCTT+TGG - chr3_3:80792338-80792357 None:intergenic 35.0%
! GACTGGTTAATGTTGTTGTT+GGG + chr3_3:80792377-80792396 Msa0476890:CDS 35.0%
AATCAAAGGTTTGGCTGATT+TGG + chr3_3:80792432-80792451 Msa0476890:CDS 35.0%
TTGTCTTTGCACTGCAATTA+AGG + chr3_3:80792465-80792484 Msa0476890:CDS 35.0%
!!! TTGTTTTTTGACAAGCACCA+AGG - chr3_3:80792540-80792559 None:intergenic 35.0%
!! TGATGGTGGACAATTAGCTT+CGG - chr3_3:80789340-80789359 None:intergenic 40.0%
!! CCTAGCTTTAAGGTATCCTT+AGG - chr3_3:80789417-80789436 None:intergenic 40.0%
CCTAAGGATACCTTAAAGCT+AGG + chr3_3:80789414-80789433 Msa0476890:CDS 40.0%
!! GGGTTTGTGCTGATCTTTTA+GGG + chr3_3:80789436-80789455 Msa0476890:CDS 40.0%
!!! TTGTGCTGATCTTTTAGGGT+TGG + chr3_3:80789440-80789459 Msa0476890:CDS 40.0%
CAACATTTACTACCTGAAGG+AGG - chr3_3:80789486-80789505 None:intergenic 40.0%
GCACAACATTTACTACCTGA+AGG - chr3_3:80789489-80789508 None:intergenic 40.0%
GATTAAGGGTTTGGCTGATT+TGG + chr3_3:80789512-80789531 Msa0476890:CDS 40.0%
TTGTCTTTGCACTGCACTTA+AGG + chr3_3:80789545-80789564 Msa0476890:CDS 40.0%
!!! CGGTTTTTTGACATGCACTA+AGG - chr3_3:80789620-80789639 None:intergenic 40.0%
ATTGGAATCCTTAGGGACAT+TGG - chr3_3:80789656-80789675 None:intergenic 40.0%
TGTCCCTAAGGATTCCAATT+AGG + chr3_3:80789657-80789676 Msa0476890:intron 40.0%
!! TCTTTCTTTTAAGGGCGAAG+TGG + chr3_3:80790611-80790630 Msa0476890:intron 40.0%
ATTGTTGAAGCCAAAACACG+CGG - chr3_3:80790980-80790999 None:intergenic 40.0%
! CTCATAGATAAAATGGTGGG+TGG + chr3_3:80791931-80791950 Msa0476890:intron 40.0%
ACAAATGAGAAAAGGCCCAT+AGG + chr3_3:80791965-80791984 Msa0476890:intron 40.0%
TTGGATGATACAGAGCCTAT+GGG - chr3_3:80791983-80792002 None:intergenic 40.0%
TTTGGATGATACAGAGCCTA+TGG - chr3_3:80791984-80792003 None:intergenic 40.0%
!! AAGCTTACAAAAGTACCGAC+TGG + chr3_3:80792027-80792046 Msa0476890:intron 40.0%
!! CAATATGTGTGTTGGTTGAG+AGG - chr3_3:80792148-80792167 None:intergenic 40.0%
!! GAGAGAGAGTACTAAAATGG+TGG - chr3_3:80792227-80792246 None:intergenic 40.0%
CTCAACATTTACTGAGGCTA+AGG + chr3_3:80792255-80792274 Msa0476890:CDS 40.0%
AGCACAAACCCCTAACTTTA+AGG - chr3_3:80792347-80792366 None:intergenic 40.0%
!!! TTGTGCTGATGTTTTAGGAC+TGG + chr3_3:80792360-80792379 Msa0476890:CDS 40.0%
!! GGACTGGTTAATGTTGTTGT+TGG + chr3_3:80792376-80792395 Msa0476890:CDS 40.0%
CAACAATTACTACCTGAAGC+AGG - chr3_3:80792406-80792425 None:intergenic 40.0%
CAAGTTTATTCCGAGCACAT+TGG - chr3_3:80792491-80792510 None:intergenic 40.0%
TGTCAAAAAACAATCCCTCC+TGG + chr3_3:80792547-80792566 Msa0476890:CDS 40.0%
AGCTTCGGTGAATGTTGAGT+AGG - chr3_3:80789325-80789344 None:intergenic 45.0%
!! TCCTTAGGGCATTGACCTTT+GGG - chr3_3:80789402-80789421 None:intergenic 45.0%
!! ATCCTTAGGGCATTGACCTT+TGG - chr3_3:80789403-80789422 None:intergenic 45.0%
!! AGCACAAACCCCTAGCTTTA+AGG - chr3_3:80789427-80789446 None:intergenic 45.0%
!! GGGGTTTGTGCTGATCTTTT+AGG + chr3_3:80789435-80789454 Msa0476890:CDS 45.0%
GTTATTGGAAACCCTCCTTC+AGG + chr3_3:80789471-80789490 Msa0476890:CDS 45.0%
!! TAAGGGTTTGGCTGATTTGG+AGG + chr3_3:80789515-80789534 Msa0476890:CDS 45.0%
GCACTTAAGGCTAATGTGCT+TGG + chr3_3:80789558-80789577 Msa0476890:CDS 45.0%
TGCTGAACGCACGTAACATT+TGG - chr3_3:80790103-80790122 None:intergenic 45.0%
! CAAACACTAACCGCGTGTTT+TGG + chr3_3:80790967-80790986 Msa0476890:intron 45.0%
!! TTCGCTTAGCTTGCAAGTCA+CGG - chr3_3:80791432-80791451 None:intergenic 45.0%
TTCTCCACTTTCATGGCGTT+GGG - chr3_3:80791599-80791618 None:intergenic 45.0%
TTTCTCCACTTTCATGGCGT+TGG - chr3_3:80791600-80791619 None:intergenic 45.0%
!! GGTGGCAAAGAATTTGGTGT+TGG - chr3_3:80792209-80792228 None:intergenic 45.0%
!! GGGGTTTGTGCTGATGTTTT+AGG + chr3_3:80792355-80792374 Msa0476890:CDS 45.0%
GCAATTAAGGCCAATGTGCT+CGG + chr3_3:80792478-80792497 Msa0476890:CDS 45.0%
AGGCACATTGAAAACCAGGA+GGG - chr3_3:80792564-80792583 None:intergenic 45.0%
TAGGCACATTGAAAACCAGG+AGG - chr3_3:80792565-80792584 None:intergenic 45.0%
!!! ATTTTTTTTTCTTATAATTT+AGG + chr3_3:80790415-80790434 Msa0476890:intron 5.0%
!! GAAGGTGTTGGCTTTGGTGA+TGG - chr3_3:80789357-80789376 None:intergenic 50.0%
CATTGACCTTTGGGTGAAGG+TGG - chr3_3:80789393-80789412 None:intergenic 50.0%
ACCCAAAGGTCAATGCCCTA+AGG + chr3_3:80789398-80789417 Msa0476890:CDS 50.0%
TGTCAAAAAACCGTCCCTCC+TGG + chr3_3:80789627-80789646 Msa0476890:CDS 50.0%
ACATTGGAAACCAGGAGGGA+CGG - chr3_3:80789640-80789659 None:intergenic 50.0%
AGGGACATTGGAAACCAGGA+GGG - chr3_3:80789644-80789663 None:intergenic 50.0%
TAGGGACATTGGAAACCAGG+AGG - chr3_3:80789645-80789664 None:intergenic 50.0%
CCTTAGGGACATTGGAAACC+AGG - chr3_3:80789648-80789667 None:intergenic 50.0%
CCTGGTTTCCAATGTCCCTA+AGG + chr3_3:80789645-80789664 Msa0476890:intron 50.0%
TTAAGGGCGAAGTGGTAGCA+CGG + chr3_3:80790619-80790638 Msa0476890:intron 50.0%
!! TCGCTTAGCTTGCAAGTCAC+GGG - chr3_3:80791431-80791450 None:intergenic 50.0%
CAAACCCAACGCCATGAAAG+TGG + chr3_3:80791592-80791611 Msa0476890:intron 50.0%
!! GTTGGCTTTGGCTTTGGTGA+TGG - chr3_3:80792292-80792311 None:intergenic 50.0%
!! GAAGGTGTTGGCTTTGGCTT+TGG - chr3_3:80792298-80792317 None:intergenic 50.0%
!! ATCTTTGGGGCAGTGACCTT+GGG - chr3_3:80792323-80792342 None:intergenic 50.0%
!! TATCTTTGGGGCAGTGACCT+TGG - chr3_3:80792324-80792343 None:intergenic 50.0%
GTTGTTGGGAATCCTGCTTC+AGG + chr3_3:80792391-80792410 Msa0476890:CDS 50.0%
ATGTACCTATCACCCTCACC+TGG + chr3_3:80792512-80792531 Msa0476890:CDS 50.0%
TTGACAAGCACCAAGGATCC+AGG - chr3_3:80792533-80792552 None:intergenic 50.0%
!! GGTGTTGGCTTTGGTGATGG+TGG - chr3_3:80789354-80789373 None:intergenic 55.0%
!! GCAGGTGAAGGTGTTGGCTT+TGG - chr3_3:80789363-80789382 None:intergenic 55.0%
! ACAGGAGCAGGTGAAGGTGT+TGG - chr3_3:80789369-80789388 None:intergenic 55.0%
CCTTTGGGTGAAGGTGGAAC+AGG - chr3_3:80789387-80789406 None:intergenic 55.0%
CCTGTTCCACCTTCACCCAA+AGG + chr3_3:80789384-80789403 Msa0476890:CDS 55.0%
!! GGGCATTGACCTTTGGGTGA+AGG - chr3_3:80789396-80789415 None:intergenic 55.0%
!! TGGGGTGAAGGTGTTGGCTT+TGG - chr3_3:80792304-80792323 None:intergenic 55.0%
AAGCCAACACCTTCACCCCA+AGG + chr3_3:80792304-80792323 Msa0476890:CDS 55.0%
! TGACCTTGGGGTGAAGGTGT+TGG - chr3_3:80792310-80792329 None:intergenic 55.0%
!! TCTTTGGGGCAGTGACCTTG+GGG - chr3_3:80792322-80792341 None:intergenic 55.0%
AGGATCCAGGTGAGGGTGAT+AGG - chr3_3:80792520-80792539 None:intergenic 55.0%
ATCACCCTCACCTGGATCCT+TGG + chr3_3:80792520-80792539 Msa0476890:CDS 55.0%
AGCACCAAGGATCCAGGTGA+GGG - chr3_3:80792527-80792546 None:intergenic 55.0%
AAGCACCAAGGATCCAGGTG+AGG - chr3_3:80792528-80792547 None:intergenic 55.0%
GGTGGAACAGGAGCAGGTGA+AGG - chr3_3:80789375-80789394 None:intergenic 60.0%
GGTGAAGGTGGAACAGGAGC+AGG - chr3_3:80789381-80789400 None:intergenic 60.0%
! AGGAGCACGCTGAGCGTGAT+AGG - chr3_3:80789600-80789619 None:intergenic 60.0%
GGGCAGTGACCTTGGGGTGA+AGG - chr3_3:80792316-80792335 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80789273 80792585 80789273 ID=Msa0476890;Name=Msa0476890
chr3_3 mRNA 80789273 80792585 80789273 ID=Msa0476890-mRNA-1;Parent=Msa0476890;Name=Msa0476890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|254
chr3_3 exon 80789273 80789648 80789273 ID=Msa0476890-mRNA-1:exon:22226;Parent=Msa0476890-mRNA-1
chr3_3 exon 80792197 80792585 80792197 ID=Msa0476890-mRNA-1:exon:22227;Parent=Msa0476890-mRNA-1
chr3_3 CDS 80789273 80789648 80789273 ID=Msa0476890-mRNA-1:cds;Parent=Msa0476890-mRNA-1
chr3_3 CDS 80792197 80792585 80792197 ID=Msa0476890-mRNA-1:cds;Parent=Msa0476890-mRNA-1
Gene Sequence

>Msa0476890

ATGGCTTCCAACAAATTCTCTGCCTTAATTTTAGTGCTTTCTCTTCTTGCCTACTCAACATTCACCGAAGCTAATTGTCCACCATCACCAAAGCCAACACCTTCACCTGCTCCTGTTCCACCTTCACCCAAAGGTCAATGCCCTAAGGATACCTTAAAGCTAGGGGTTTGTGCTGATCTTTTAGGGTTGGTTAATGTTGTTATTGGAAACCCTCCTTCAGGTAGTAAATGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAGGCTGCACTTTGTCTTTGCACTGCACTTAAGGCTAATGTGCTTGGAATCAACTTGAACGTGCCTATCACGCTCAGCGTGCTCCTTAGTGCATGTCAAAAAACCGTCCCTCCTGTCATGGCTTCCAACACCAAATTCTTTGCCACCATTTTAGTACTCTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAACACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGGAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTCGGAATAAACTTGAATGTACCTATCACCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA

Protein sequence

>Msa0476890

MASNKFSALILVLSLLAYSTFTEANCPPSPKPTPSPAPVPPSPKGQCPKDTLKLGVCADLLGLVNVVIGNPPSGSKCCALIKGLADLEAALCLCTALKANVLGINLNVPITLSVLLSACQKTVPPVMASNTKFFATILVLSLLAYSTFTEAKGSCSPSPKPKPTPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPITLTWILGACQKTIPPGFQCA*