AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876520 MtrunA17_Chr7g0234981 89.655 87 9 0 285 371 7 93 9.45e-50 162
Msa0876520 MtrunA17_Chr7g0237681 62.712 118 32 1 144 249 1 118 5.16e-43 145
Msa0876520 MtrunA17_Chr3g0121651 51.111 135 47 2 96 211 1 135 7.38e-38 133
Msa0876520 MtrunA17_Chr8g0383831 59.130 115 33 2 149 251 1 113 3.48e-35 125
Msa0876520 MtrunA17_MTg0491661 67.470 83 27 0 289 371 41 123 1.13e-33 121
Msa0876520 MtrunA17_Chr3g0141711 52.308 130 50 3 1 120 12 139 1.67e-31 116
Msa0876520 MtrunA17_Chr1g0194331 41.212 165 53 2 54 174 1 165 3.80e-31 116
Msa0876520 MtrunA17_Chr5g0425751 40.642 187 69 3 75 251 6 160 5.98e-30 112
Msa0876520 MtrunA17_Chr3g0086871 56.863 102 30 2 121 210 46 145 4.59e-29 110
Msa0876520 MtrunA17_Chr3g0106371 66.667 78 26 0 174 251 451 528 3.59e-25 107
Msa0876520 MtrunA17_Chr3g0118311 42.657 143 62 3 121 251 56 190 9.80e-25 99.8
Msa0876520 MtrunA17_Chr8g0347241 39.474 152 47 2 96 202 1 152 8.27e-23 93.6
Msa0876520 MtrunA17_Chr8g0389551 40.000 150 44 3 96 200 1 149 1.72e-21 89.7
Msa0876520 MtrunA17_Chr4g0067851 75.556 45 11 0 121 165 13 57 7.91e-18 76.6
Msa0876520 MtrunA17_Chr3g0132481 45.570 79 31 1 122 188 22 100 8.29e-15 70.1
Msa0876520 MtrunA17_Chr6g0487541 60.870 46 18 0 174 219 1 46 8.29e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876520 ATCG00905.1 98.824 85 1 0 287 371 1 85 2.30e-55 176
Msa0876520 ATCG01230.1 98.824 85 1 0 287 371 1 85 2.30e-55 176
Msa0876520 AT2G07675.1 52.893 121 50 2 251 371 10 123 5.79e-34 122
Msa0876520 ATMG00980.1 52.893 121 50 2 251 371 10 123 5.79e-34 122

Find 68 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCTTTCGAAGTAAT+TGG 0.147507 6_1:-14759268 None:intergenic
GGGGCTAAAATAATTTATTT+TGG 0.180484 6_1:-14759619 None:intergenic
ACATTTATGTCTGACAATTT+TGG 0.182009 6_1:+14757390 Msa0876520:CDS
CAACAAGGTCGTTCTAAATA+TGG 0.216871 6_1:+14759586 Msa0876520:CDS
CAGAATGTTCTTGTAAATTA+TGG 0.231614 6_1:-14759468 None:intergenic
ATTATCTTTGCAATTCAAAA+AGG 0.286642 6_1:+14757513 Msa0876520:CDS
TCCTAAAGCACAACATGTTT+TGG 0.316511 6_1:+14756826 Msa0876520:CDS
AAGGCGTGTCTAGATACTTT+TGG 0.324995 6_1:+14757055 Msa0876520:CDS
ACCAAAACATGTTGTGCTTT+AGG 0.329826 6_1:-14756827 None:intergenic
TTGATGAAAGATCGACCTTT+AGG 0.336169 6_1:+14757217 Msa0876520:CDS
CTCTTTGAACTTTATGTAGA+AGG 0.342714 6_1:-14757437 None:intergenic
GAATATCCTGAGCATGAATA+TGG 0.347274 6_1:-14756973 None:intergenic
ACAAGACAGAAAGTATTTCT+TGG 0.369801 6_1:+14756908 Msa0876520:CDS
AAGTATCTAGACACGCCTTA+TGG 0.370704 6_1:-14757051 None:intergenic
CCTTTACTCCGACAGCATCT+AGG 0.372692 6_1:-14759558 None:intergenic
ACTTTACGTAAGGCAGAGTT+TGG 0.377633 6_1:-14759388 None:intergenic
AACAAGGTCGTTCTAAATAT+GGG 0.408379 6_1:+14759587 Msa0876520:CDS
AAAATTTAGACATGAGTAGA+AGG 0.411577 6_1:-14757564 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 6_1:-14759585 None:intergenic
CACTTGTGAGATTGGGAACT+AGG 0.422949 6_1:+14757310 Msa0876520:CDS
TGTTTCACCACTTGTGAGAT+TGG 0.433331 6_1:+14757302 Msa0876520:CDS
TTGTAAATTATGGCCAATAC+CGG 0.438557 6_1:-14759458 None:intergenic
CATTCTGTAGTCTTAGTAAG+AGG 0.441296 6_1:+14759484 Msa0876520:CDS
TATAAAAGCATGTTGATTGT+CGG 0.451619 6_1:-14757367 None:intergenic
CAAGACAGAAAGTATTTCTT+GGG 0.455691 6_1:+14756909 Msa0876520:CDS
AATACAACATTCATTAATCT+AGG 0.462998 6_1:-14757483 None:intergenic
AGCTATCCATATTCATGCTC+AGG 0.468267 6_1:+14756967 Msa0876520:CDS
AGGTCGATCTTTCATCAAGT+TGG 0.485251 6_1:-14757212 None:intergenic
GCCAGAGTACGCTTAACCTC+TGG 0.485872 6_1:+14759412 Msa0876520:CDS
GTTTCACCACTTGTGAGATT+GGG 0.486597 6_1:+14757303 Msa0876520:CDS
AGAAAGTATTTCTTGGGTGT+TGG 0.489872 6_1:+14756915 Msa0876520:CDS
ACTGCTTATATACCCGGTAT+TGG 0.491318 6_1:+14759445 Msa0876520:CDS
CAATAGATGTTATGATGTAC+AGG 0.498403 6_1:+14757241 Msa0876520:CDS
AAGAAATACTTTCTGTCTTG+TGG 0.500120 6_1:-14756906 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 6_1:-14759557 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 6_1:+14759558 Msa0876520:CDS
CATAACATCTATTGACCTAA+AGG 0.507664 6_1:-14757232 None:intergenic
GGTCAACGATCTTTAGTGCT+AGG 0.519470 6_1:-14757416 None:intergenic
AATGTTATGGATGGTCTTTG+TGG 0.524194 6_1:+14756752 Msa0876520:CDS
ATTGAACGAGGAGCCGTATG+AGG 0.537706 6_1:+14759285 Msa0876520:CDS
TACTCTGGCAACTTTACGTA+AGG 0.546111 6_1:-14759398 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 6_1:+14759485 Msa0876520:CDS
GGTTCTGTAGAGTGGCAGTA+AGG 0.572203 6_1:+14759324 Msa0876520:intron
TCCAGAGGTTAAGCGTACTC+TGG 0.572579 6_1:-14759413 None:intergenic
ATGATGTACAGGTGGGTAGG+AGG 0.572898 6_1:+14757252 Msa0876520:CDS
ACTTGTGAGATTGGGAACTA+GGG 0.577639 6_1:+14757311 Msa0876520:CDS
GAAATCACTGCTTATATACC+CGG 0.578898 6_1:+14759439 Msa0876520:CDS
TGGTTAAAGAAGAAGTTCAC+AGG 0.580392 6_1:-14757192 None:intergenic
CATATATGTGTGGATTTGAC+TGG 0.581315 6_1:+14757279 Msa0876520:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 6_1:+14759532 Msa0876520:CDS
GTTATGATGTACAGGTGGGT+AGG 0.589070 6_1:+14757249 Msa0876520:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 6_1:+14759486 Msa0876520:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 6_1:+14759571 Msa0876520:CDS
TAAAGAGAAAGTGGGATGAG+TGG 0.601259 6_1:+14756710 None:intergenic
TGTAAATTATGGCCAATACC+GGG 0.601960 6_1:-14759457 None:intergenic
TAGATGTTATGATGTACAGG+TGG 0.601987 6_1:+14757244 Msa0876520:CDS
CTAGTTCCCAATCTCACAAG+TGG 0.605409 6_1:-14757309 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 6_1:+14759550 Msa0876520:CDS
GACACGCCTTATGGAAAACA+TGG 0.619630 6_1:-14757042 None:intergenic
AGCAGTGATTTCAAATCCAG+AGG 0.620729 6_1:-14759428 None:intergenic
ACAAGGTCGTTCTAAATATG+GGG 0.627597 6_1:+14759588 Msa0876520:CDS
AGATGTTATGATGTACAGGT+GGG 0.634544 6_1:+14757245 Msa0876520:CDS
GGAAGGGTTAAGGATTTACC+TGG 0.642987 6_1:+14759508 Msa0876520:CDS
AGGAGGAAAACATATATGTG+TGG 0.652353 6_1:+14757269 Msa0876520:CDS
GAGTGGAGATTATCGAACGA+AGG 0.659654 6_1:+14759243 Msa0876520:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 6_1:+14759487 Msa0876520:CDS
ACAATGTGATATCTCACACC+AGG 0.678462 6_1:-14759526 None:intergenic
TACTTCGAAAGAATTGAACG+AGG 0.737159 6_1:+14759273 Msa0876520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATAATAA+AGG + chr6_1:14757616-14757635 Msa0876520:intron 0.0%
!!! TTATTTTTTATTTTAATATA+AGG - chr6_1:14758371-14758390 None:intergenic 0.0%
!! CATAGAATAGAAAATATTAA+TGG + chr6_1:14758810-14758829 Msa0876520:intron 15.0%
!! GTCTCATCAATAAAAAATAA+AGG - chr6_1:14757019-14757038 None:intergenic 20.0%
!! AATACAACATTCATTAATCT+AGG - chr6_1:14757486-14757505 None:intergenic 20.0%
!! ATTATCTTTGCAATTCAAAA+AGG + chr6_1:14757513-14757532 Msa0876520:CDS 20.0%
!! AAAACAAAGGAATATAGATA+TGG + chr6_1:14758193-14758212 Msa0876520:intron 20.0%
!!! CAATATATAACAAACACTTT+TGG + chr6_1:14758344-14758363 Msa0876520:intron 20.0%
!! ATATAATAGAAGCTTGATAT+TGG + chr6_1:14758502-14758521 Msa0876520:intron 20.0%
!!! AACCTTAAATTAAAGTTGAT+CGG + chr6_1:14758571-14758590 Msa0876520:intron 20.0%
!! ATCTATCTATAATGATCAAT+TGG - chr6_1:14758905-14758924 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr6_1:14759171-14759190 Msa0876520:intron 20.0%
!!! AATTAGTTCTCGTTATTTTT+AGG + chr6_1:14759216-14759235 Msa0876520:intron 20.0%
!!! ATTAGTTCTCGTTATTTTTA+GGG + chr6_1:14759217-14759236 Msa0876520:intron 20.0%
! AATACATGCATAACTTTGTT+AGG + chr6_1:14757115-14757134 Msa0876520:intron 25.0%
! ATACATGCATAACTTTGTTA+GGG + chr6_1:14757116-14757135 Msa0876520:intron 25.0%
!! TCCTTTTTGATATATTCATG+CGG + chr6_1:14757142-14757161 Msa0876520:intron 25.0%
!! TATAAAAGCATGTTGATTGT+CGG - chr6_1:14757370-14757389 None:intergenic 25.0%
!! ACATTTATGTCTGACAATTT+TGG + chr6_1:14757390-14757409 Msa0876520:CDS 25.0%
! AAAATTTAGACATGAGTAGA+AGG - chr6_1:14757567-14757586 None:intergenic 25.0%
!! CTTTAGATTCCAAAATTTTG+AGG + chr6_1:14757774-14757793 Msa0876520:intron 25.0%
! ATCATACTTATGAAATCTAG+AGG + chr6_1:14757910-14757929 Msa0876520:intron 25.0%
!! CTTTAAGAATTTGAACACAT+TGG + chr6_1:14757939-14757958 Msa0876520:intron 25.0%
!! ATTTCAAGAAGTTTTCTACA+TGG - chr6_1:14757972-14757991 None:intergenic 25.0%
! AAAAAGTTACACATGATAAG+TGG - chr6_1:14758096-14758115 None:intergenic 25.0%
!! ATCCGATCAACTTTAATTTA+AGG - chr6_1:14758576-14758595 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr6_1:14758918-14758937 Msa0876520:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr6_1:14758994-14759013 Msa0876520:intron 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr6_1:14758995-14759014 Msa0876520:intron 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr6_1:14759062-14759081 Msa0876520:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr6_1:14759072-14759091 Msa0876520:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr6_1:14759135-14759154 None:intergenic 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr6_1:14759271-14759290 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr6_1:14759471-14759490 None:intergenic 25.0%
!! CTCTGATTTTGACAATGTTA+TGG + chr6_1:14756739-14756758 Msa0876520:CDS 30.0%
!! GATTTTGACAATGTTATGGA+TGG + chr6_1:14756743-14756762 Msa0876520:CDS 30.0%
AAGAAATACTTTCTGTCTTG+TGG - chr6_1:14756909-14756928 None:intergenic 30.0%
!! ACAAGACAGAAAGTATTTCT+TGG + chr6_1:14756908-14756927 Msa0876520:CDS 30.0%
!! CAAGACAGAAAGTATTTCTT+GGG + chr6_1:14756909-14756928 Msa0876520:CDS 30.0%
! CCTTTTTGATATATTCATGC+GGG + chr6_1:14757143-14757162 Msa0876520:intron 30.0%
CATAACATCTATTGACCTAA+AGG - chr6_1:14757235-14757254 None:intergenic 30.0%
CAATAGATGTTATGATGTAC+AGG + chr6_1:14757241-14757260 Msa0876520:CDS 30.0%
CTCTTTGAACTTTATGTAGA+AGG - chr6_1:14757440-14757459 None:intergenic 30.0%
TAAGAATTTGAACACATTGG+AGG + chr6_1:14757942-14757961 Msa0876520:intron 30.0%
AAGAATTTGAACACATTGGA+GGG + chr6_1:14757943-14757962 Msa0876520:intron 30.0%
! AGGAAATTGGATATTTGCTA+AGG - chr6_1:14758002-14758021 None:intergenic 30.0%
AGGAAAACATCTTAAACGAT+TGG + chr6_1:14758230-14758249 Msa0876520:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr6_1:14759051-14759070 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr6_1:14759052-14759071 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr6_1:14759050-14759069 Msa0876520:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr6_1:14759067-14759086 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr6_1:14759065-14759084 Msa0876520:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr6_1:14759071-14759090 Msa0876520:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr6_1:14759461-14759480 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr6_1:14759485-14759504 Msa0876520:CDS 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr6_1:14759587-14759606 Msa0876520:CDS 30.0%
AATGTTATGGATGGTCTTTG+TGG + chr6_1:14756752-14756771 Msa0876520:CDS 35.0%
!! CTATAGCAGTTTTAGTAGCA+AGG + chr6_1:14756793-14756812 Msa0876520:CDS 35.0%
! TCCTAAAGCACAACATGTTT+TGG + chr6_1:14756826-14756845 Msa0876520:CDS 35.0%
ACCAAAACATGTTGTGCTTT+AGG - chr6_1:14756830-14756849 None:intergenic 35.0%
!! AGAAAGTATTTCTTGGGTGT+TGG + chr6_1:14756915-14756934 Msa0876520:CDS 35.0%
GAATATCCTGAGCATGAATA+TGG - chr6_1:14756976-14756995 None:intergenic 35.0%
CCCGCATGAATATATCAAAA+AGG - chr6_1:14757146-14757165 None:intergenic 35.0%
ATGAGTATTTGTGAAGAAGG+AGG + chr6_1:14757167-14757186 Msa0876520:intron 35.0%
TGGTTAAAGAAGAAGTTCAC+AGG - chr6_1:14757195-14757214 None:intergenic 35.0%
TTGATGAAAGATCGACCTTT+AGG + chr6_1:14757217-14757236 Msa0876520:CDS 35.0%
TAGATGTTATGATGTACAGG+TGG + chr6_1:14757244-14757263 Msa0876520:CDS 35.0%
AGATGTTATGATGTACAGGT+GGG + chr6_1:14757245-14757264 Msa0876520:CDS 35.0%
AGGAGGAAAACATATATGTG+TGG + chr6_1:14757269-14757288 Msa0876520:CDS 35.0%
CATATATGTGTGGATTTGAC+TGG + chr6_1:14757279-14757298 Msa0876520:CDS 35.0%
TGCAATTCAAAAAGGCTTAG+CGG + chr6_1:14757521-14757540 Msa0876520:CDS 35.0%
TAAACCAACGATGATATGAG+CGG - chr6_1:14758045-14758064 None:intergenic 35.0%
!! TCATATCATCGTTGGTTTAG+CGG + chr6_1:14758046-14758065 Msa0876520:intron 35.0%
AGTTACACATGATAAGTGGA+AGG - chr6_1:14758092-14758111 None:intergenic 35.0%
GGAATATAGATATGGAGACA+TGG + chr6_1:14758201-14758220 Msa0876520:intron 35.0%
ATTGGATATGTTCAGAGTGA+AGG + chr6_1:14758248-14758267 Msa0876520:intron 35.0%
TTGGATATGTTCAGAGTGAA+GGG + chr6_1:14758249-14758268 Msa0876520:intron 35.0%
! CTTGAGACTCCAAAATTTTG+AGG + chr6_1:14758396-14758415 Msa0876520:intron 35.0%
ATCGGATCATTGAAGTTTGT+TGG + chr6_1:14758589-14758608 Msa0876520:intron 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr6_1:14758849-14758868 Msa0876520:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr6_1:14758877-14758896 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr6_1:14759049-14759068 Msa0876520:intron 35.0%
!!! GTTCTCGTTATTTTTAGGGA+AGG + chr6_1:14759221-14759240 Msa0876520:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr6_1:14759273-14759292 Msa0876520:CDS 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr6_1:14759301-14759320 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr6_1:14759303-14759322 Msa0876520:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr6_1:14759371-14759390 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr6_1:14759381-14759400 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr6_1:14759382-14759401 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr6_1:14759439-14759458 Msa0876520:CDS 35.0%
TGTAAATTATGGCCAATACC+GGG - chr6_1:14759460-14759479 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr6_1:14759484-14759503 Msa0876520:CDS 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr6_1:14759486-14759505 Msa0876520:CDS 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr6_1:14759588-14759607 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr6_1:14759586-14759605 Msa0876520:CDS 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr6_1:14759588-14759607 Msa0876520:CDS 35.0%
AGCTATCCATATTCATGCTC+AGG + chr6_1:14756967-14756986 Msa0876520:CDS 40.0%
AAGTATCTAGACACGCCTTA+TGG - chr6_1:14757054-14757073 None:intergenic 40.0%
! AAGGCGTGTCTAGATACTTT+TGG + chr6_1:14757055-14757074 Msa0876520:CDS 40.0%
! CGTGTCTAGATACTTTTGGA+GGG + chr6_1:14757059-14757078 Msa0876520:CDS 40.0%
GGCATGAGTATTTGTGAAGA+AGG + chr6_1:14757164-14757183 Msa0876520:intron 40.0%
AGGTCGATCTTTCATCAAGT+TGG - chr6_1:14757215-14757234 None:intergenic 40.0%
TGTTTCACCACTTGTGAGAT+TGG + chr6_1:14757302-14757321 Msa0876520:CDS 40.0%
GTTTCACCACTTGTGAGATT+GGG + chr6_1:14757303-14757322 Msa0876520:CDS 40.0%
ACTTGTGAGATTGGGAACTA+GGG + chr6_1:14757311-14757330 Msa0876520:CDS 40.0%
AATTCAAAAAGGCTTAGCGG+TGG + chr6_1:14757524-14757543 Msa0876520:CDS 40.0%
! GGAGCTGAACCTCAAAATTT+TGG - chr6_1:14757786-14757805 None:intergenic 40.0%
TAACAAGTGCAGGGTGAATA+AGG - chr6_1:14757807-14757826 None:intergenic 40.0%
! TATTCACCCTGCACTTGTTA+AGG + chr6_1:14757807-14757826 Msa0876520:intron 40.0%
! ATTCACCCTGCACTTGTTAA+GGG + chr6_1:14757808-14757827 Msa0876520:intron 40.0%
AGCGACGTAGAAAAGGAAAT+TGG - chr6_1:14758015-14758034 None:intergenic 40.0%
GTTCAATAGCGACGTAGAAA+AGG - chr6_1:14758022-14758041 None:intergenic 40.0%
AAACCAACGATGATATGAGC+GGG - chr6_1:14758044-14758063 None:intergenic 40.0%
ATATGGAGACATGGCAAAAG+AGG + chr6_1:14758210-14758229 Msa0876520:intron 40.0%
TGGATATGTTCAGAGTGAAG+GGG + chr6_1:14758250-14758269 Msa0876520:intron 40.0%
! GGAGCTGAACCTCAAAATTT+TGG - chr6_1:14757786-14757805 None:intergenic 40.0%
! ATTCACCCTGCACTTGTTAA+GGG + chr6_1:14757808-14757827 Msa0876520:intron 40.0%
AGCGGGTATCTTTCACAAAA+AGG + chr6_1:14758978-14758997 Msa0876520:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr6_1:14759007-14759026 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr6_1:14759028-14759047 None:intergenic 40.0%
!!! CGTTATTTTTAGGGAAGGAG+TGG + chr6_1:14759226-14759245 Msa0876520:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr6_1:14759380-14759399 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr6_1:14759391-14759410 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr6_1:14759401-14759420 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr6_1:14759431-14759450 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr6_1:14759445-14759464 Msa0876520:CDS 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr6_1:14759487-14759506 Msa0876520:CDS 40.0%
ACAATGTGATATCTCACACC+AGG - chr6_1:14759529-14759548 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr6_1:14759532-14759551 Msa0876520:CDS 40.0%
! GACGTGCCATGTTTTCCATA+AGG + chr6_1:14757036-14757055 Msa0876520:CDS 45.0%
GACACGCCTTATGGAAAACA+TGG - chr6_1:14757045-14757064 None:intergenic 45.0%
! GCGTGTCTAGATACTTTTGG+AGG + chr6_1:14757058-14757077 Msa0876520:CDS 45.0%
GTTATGATGTACAGGTGGGT+AGG + chr6_1:14757249-14757268 Msa0876520:CDS 45.0%
CTAGTTCCCAATCTCACAAG+TGG - chr6_1:14757312-14757331 None:intergenic 45.0%
CACTTGTGAGATTGGGAACT+AGG + chr6_1:14757310-14757329 Msa0876520:CDS 45.0%
GGTCAACGATCTTTAGTGCT+AGG - chr6_1:14757419-14757438 None:intergenic 45.0%
! CTGATCAAGGGTGTGATCAA+TGG + chr6_1:14757837-14757856 Msa0876520:intron 45.0%
AACAAGTGCAGGGTGAATGA+AGG - chr6_1:14758429-14758448 None:intergenic 45.0%
! CATTCACCCTGCACTTGTTA+AGG + chr6_1:14758430-14758449 Msa0876520:intron 45.0%
TCCTTCTCATCACGCAAGAA+AGG + chr6_1:14758652-14758671 Msa0876520:intron 45.0%
TCCTTTCTTGCGTGATGAGA+AGG - chr6_1:14758656-14758675 None:intergenic 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr6_1:14759082-14759101 Msa0876520:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr6_1:14759243-14759262 Msa0876520:CDS 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr6_1:14759316-14759335 Msa0876520:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr6_1:14759491-14759510 Msa0876520:CDS 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr6_1:14759492-14759511 Msa0876520:CDS 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr6_1:14759508-14759527 Msa0876520:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr6_1:14759560-14759579 None:intergenic 45.0%
!!! GTTTTTTTTTTTTTAATATA+AGG - chr6_1:14757755-14757774 None:intergenic 5.0%
!! TATATATATATATAAAACAA+AGG + chr6_1:14758180-14758199 Msa0876520:intron 5.0%
ATGATGTACAGGTGGGTAGG+AGG + chr6_1:14757252-14757271 Msa0876520:CDS 50.0%
! ACCCTGCACTTGTTAAGGGA+CGG + chr6_1:14757812-14757831 Msa0876520:intron 50.0%
TTAAGGGACGGGTCTGATCA+AGG + chr6_1:14757824-14757843 Msa0876520:intron 50.0%
TAAGGGACGGGTCTGATCAA+GGG + chr6_1:14757825-14757844 Msa0876520:intron 50.0%
GAACCCGCTCATATCATCGT+TGG + chr6_1:14758038-14758057 Msa0876520:intron 50.0%
CCTGTCCCTTAACAAGTGCA+GGG - chr6_1:14758439-14758458 None:intergenic 50.0%
ACCTGTCCCTTAACAAGTGC+AGG - chr6_1:14758440-14758459 None:intergenic 50.0%
AGATACCCGCTTTCGTGCTT+TGG - chr6_1:14758969-14758988 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr6_1:14759010-14759029 Msa0876520:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr6_1:14759285-14759304 Msa0876520:CDS 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr6_1:14759324-14759343 Msa0876520:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr6_1:14759416-14759435 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr6_1:14759498-14759517 Msa0876520:CDS 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr6_1:14759561-14759580 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr6_1:14759558-14759577 Msa0876520:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr6_1:14759571-14759590 Msa0876520:CDS 50.0%
CCCGTCCCTTAACAAGTGCA+GGG - chr6_1:14757816-14757835 None:intergenic 55.0%
! CCCTGCACTTGTTAAGGGAC+GGG + chr6_1:14757813-14757832 Msa0876520:intron 55.0%
ACCCGTCCCTTAACAAGTGC+AGG - chr6_1:14757817-14757836 None:intergenic 55.0%
! CCCTGCACTTGTTAAGGGAC+AGG + chr6_1:14757813-14757832 Msa0876520:intron 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr6_1:14758960-14758979 Msa0876520:intron 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr6_1:14758961-14758980 Msa0876520:intron 55.0%
ACCCGCTTTCGTGCTTTGGT+GGG - chr6_1:14758965-14758984 None:intergenic 55.0%
TACCCGCTTTCGTGCTTTGG+TGG - chr6_1:14758966-14758985 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr6_1:14759412-14759431 Msa0876520:CDS 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr6_1:14759550-14759569 Msa0876520:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 14756725 14759627 14756725 ID=Msa0876520;Name=Msa0876520
chr6_1 mRNA 14756725 14759627 14756725 ID=Msa0876520-mRNA-1;Parent=Msa0876520;Name=Msa0876520-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.25|1|1|4|0|371
chr6_1 exon 14756725 14757084 14756725 ID=Msa0876520-mRNA-1:exon:4218;Parent=Msa0876520-mRNA-1
chr6_1 exon 14757183 14757575 14757183 ID=Msa0876520-mRNA-1:exon:4219;Parent=Msa0876520-mRNA-1
chr6_1 exon 14759238 14759306 14759238 ID=Msa0876520-mRNA-1:exon:4220;Parent=Msa0876520-mRNA-1
chr6_1 exon 14759334 14759627 14759334 ID=Msa0876520-mRNA-1:exon:4221;Parent=Msa0876520-mRNA-1
chr6_1 CDS 14756725 14757084 14756725 ID=Msa0876520-mRNA-1:cds;Parent=Msa0876520-mRNA-1
chr6_1 CDS 14757183 14757575 14757183 ID=Msa0876520-mRNA-1:cds;Parent=Msa0876520-mRNA-1
chr6_1 CDS 14759238 14759306 14759238 ID=Msa0876520-mRNA-1:cds;Parent=Msa0876520-mRNA-1
chr6_1 CDS 14759334 14759627 14759334 ID=Msa0876520-mRNA-1:cds;Parent=Msa0876520-mRNA-1
Gene Sequence

>Msa0876520

ATGAGTGGTATGAACTCTGATTTTGACAATGTTATGGATGGTCTTTGTGGTGCGATTCTAGATTGTTACTATAGCAGTTTTAGTAGCAAGGACTTCGTCTCTCCTAAAGCACAACATGTTTTGGTGAGTGCTTTTTCTTTTATTAAAATTGTTCAAGATATGAAAGTGAAGTTTGACATGACCACAAGACAGAAAGTATTTCTTGGGTGTTGGCAAGAAGAACATGCTCAAGATTTTCTTCTAGCTATCCATATTCATGCTCAGGATATTCTTCAATATCGCTTAATGATTCCTTTATTTTTTATTGATGAGACGTGCCATGTTTTCCATAAGGCGTGTCTAGATACTTTTGGAGGGCATAAGGAGGCACCTGTGAACTTCTTCTTTAACCAACTTGATGAAAGATCGACCTTTAGGTCAATAGATGTTATGATGTACAGGTGGGTAGGAGGAAAACATATATGTGTGGATTTGACTGGTGTTTCACCACTTGTGAGATTGGGAACTAGGGATTTCATGTTGTCTAAACATGAGAAATCGAGTTCCGACAATCAACATGCTTTTATAACATTTATGTCTGACAATTTTGGCTTCCTAGCACTAAAGATCGTTGACCTTCTACATAAAGTTCAAAGAGTCATGCATAGCAACACTATGTCTCCTAGATTAATGAATGTTGTATTTATAAGAATTATCTTTGCAATTCAAAAAGGCTTAGCGGTGGATCTTATTGCTCGCTTGCCTTCTACTCATGGAAGGAGTGGAGATTATCGAACGAAGGATCCAATTACTTCGAAAGAATTGAACGAGGAGCCGTATGAGAGTGGCAGTAAGGATGACTTATCTGTCAACTTTTCCACTATTACCCCTAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGGTCGTTCTAAATATGGGGCAAAAAAGCCAAAATAA

Protein sequence

>Msa0876520

MSGMNSDFDNVMDGLCGAILDCYYSSFSSKDFVSPKAQHVLVSAFSFIKIVQDMKVKFDMTTRQKVFLGCWQEEHAQDFLLAIHIHAQDILQYRLMIPLFFIDETCHVFHKACLDTFGGHKEAPVNFFFNQLDERSTFRSIDVMMYRWVGGKHICVDLTGVSPLVRLGTRDFMLSKHEKSSSDNQHAFITFMSDNFGFLALKIVDLLHKVQRVMHSNTMSPRLMNVVFIRIIFAIQKGLAVDLIARLPSTHGRSGDYRTKDPITSKELNEEPYESGSKDDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGAKKPK*