AlfalfaGEDB | Msa1391100

M. sativa cultivar zhongmu-4 / Msa1391100

KEGG: K02992
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391100	YP_009141653.1	100.000	131	0	0	1	131	25	155	1.21e-90	269

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391100	sp\|P07135\|RR7_SOYBN	96.947	131	4	0	1	131	25	155	1.13e-90	262

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391100	A0A0F6NLW0	100.000	131	0	0	1	131	25	155	5.78e-91	269

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0095190	Msa1391100	0.829288	5.597352e-55	-8.615850e-47
Msa1354380	Msa1391100	0.800273	1.557033e-48	-8.615850e-47
Msa1354420	Msa1391100	0.901022	4.074969e-78	-8.615850e-47
Msa1354430	Msa1391100	0.845452	4.025019e-59	-8.615850e-47
Msa1354480	Msa1391100	0.870738	1.162837e-66	-8.615850e-47
Msa1354490	Msa1391100	0.934467	3.861362e-96	-8.615850e-47
Msa1354500	Msa1391100	0.849288	3.560158e-60	-8.615850e-47
Msa1354550	Msa1391100	0.906040	2.266614e-80	-8.615850e-47
Msa1354560	Msa1391100	0.827562	1.460784e-54	-8.615850e-47
Msa1354610	Msa1391100	0.885617	6.969804e-72	-8.615850e-47
Msa1354620	Msa1391100	0.918986	7.910296e-87	-8.615850e-47
Msa1354630	Msa1391100	0.858188	9.776948e-63	-8.615850e-47
Msa1354680	Msa1391100	0.848219	7.048219e-60	-8.615850e-47
Msa1354690	Msa1391100	0.888045	8.359471e-73	-8.615850e-47
Msa1354700	Msa1391100	0.842437	2.587958e-58	-8.615850e-47
Msa1354740	Msa1391100	0.864370	1.276440e-64	-8.615850e-47
Msa1354750	Msa1391100	0.926219	6.328053e-91	-8.615850e-47
Msa1354760	Msa1391100	0.854109	1.532429e-61	-8.615850e-47
Msa1354810	Msa1391100	0.893406	6.477469e-75	-8.615850e-47
Msa1354820	Msa1391100	0.851867	6.709289e-61	-8.615850e-47
Msa1354900	Msa1391100	0.810420	1.163253e-50	-8.615850e-47
Msa1354910	Msa1391100	0.837101	6.340034e-57	-8.615850e-47
Msa1354920	Msa1391100	0.819331	1.228176e-52	-8.615850e-47
Msa1354930	Msa1391100	0.825344	4.934587e-54	-8.615850e-47
Msa1354980	Msa1391100	0.894259	2.918309e-75	-8.615850e-47
Msa1354990	Msa1391100	0.852631	4.067843e-61	-8.615850e-47
Msa1355070	Msa1391100	0.805923	1.055914e-49	-8.615850e-47
Msa1355080	Msa1391100	0.833651	4.718408e-56	-8.615850e-47
Msa1355090	Msa1391100	0.825646	4.183597e-54	-8.615850e-47
Msa1355100	Msa1391100	0.804308	2.298953e-49	-8.615850e-47
Msa1365890	Msa1391100	0.885680	6.601371e-72	-8.615850e-47
Msa1365900	Msa1391100	0.840367	9.073794e-58	-8.615850e-47
Msa1365950	Msa1391100	0.840681	7.509480e-58	-8.615850e-47
Msa1365960	Msa1391100	0.888591	5.153281e-73	-8.615850e-47
Msa1365970	Msa1391100	0.847091	1.439702e-59	-8.615850e-47
Msa1366080	Msa1391100	0.886588	3.000188e-72	-8.615850e-47
Msa1366090	Msa1391100	0.826141	3.192394e-54	-8.615850e-47
Msa1368230	Msa1391100	0.890783	7.205978e-74	-8.615850e-47
Msa1368240	Msa1391100	0.852118	5.693796e-61	-8.615850e-47
Msa1368290	Msa1391100	0.802300	5.990916e-49	-8.615850e-47
Msa1380600	Msa1391100	0.831828	1.337694e-55	-8.615850e-47
Msa1380620	Msa1391100	0.825361	4.887734e-54	-8.615850e-47
Msa1380680	Msa1391100	0.800795	1.218971e-48	-8.615850e-47
Msa1380690	Msa1391100	0.805009	1.641384e-49	-8.615850e-47
Msa1385410	Msa1391100	0.864920	8.591105e-65	-8.615850e-47
Msa1385420	Msa1391100	0.829748	4.326502e-55	-8.615850e-47
Msa1391090	Msa1391100	0.873794	1.115172e-67	-8.615850e-47
Msa1391100	Msa1391110	0.851327	9.542576e-61	-8.615850e-47
Msa1391100	Msa1391160	0.884617	1.645484e-71	-8.615850e-47
Msa1391100	Msa1391170	0.868921	4.558792e-66	-8.615850e-47
Msa1391100	Msa1391220	0.873706	1.194824e-67	-8.615850e-47
Msa1391100	Msa1391230	0.920409	1.327109e-87	-8.615850e-47
Msa1391100	Msa1391240	0.856546	2.990628e-62	-8.615850e-47
Msa1391100	Msa1394030	0.822541	2.241371e-53	-8.615850e-47
Msa1391100	Msa1394040	0.843951	1.021793e-58	-8.615850e-47
Msa1391100	Msa1394150	0.842118	3.142244e-58	-8.615850e-47
Msa1391100	Msa1394160	0.814472	1.514093e-51	-8.615850e-47
Msa1391100	Msa1394170	0.808415	3.132347e-50	-8.615850e-47
Msa1391100	Msa1394210	0.829512	4.939675e-55	-8.615850e-47
Msa1391100	Msa1394220	0.815770	7.795745e-52	-8.615850e-47
Msa1391100	Msa1394230	0.808234	3.423776e-50	-8.615850e-47
Msa1391100	Msa1460120	0.840206	9.996146e-58	-8.615850e-47
Msa1391100	Msa1460130	0.839029	2.023320e-57	-8.615850e-47
Msa0727020	Msa1391100	0.802344	5.864809e-49	-8.615850e-47
Msa0139800	Msa1391100	0.806359	8.549191e-50	-8.615850e-47
Msa0202640	Msa1391100	0.821409	4.099961e-53	-8.615850e-47
Msa1305090	Msa1391100	0.838564	2.668644e-57	-8.615850e-47
Msa0370210	Msa1391100	0.827046	1.942467e-54	-8.615850e-47
Msa0398630	Msa1391100	0.824481	7.884220e-54	-8.615850e-47
Msa0405420	Msa1391100	0.811328	7.395498e-51	-8.615850e-47
Msa0405430	Msa1391100	0.870928	1.007245e-66	-8.615850e-47
Msa0405440	Msa1391100	0.842283	2.843156e-58	-8.615850e-47
Msa0405510	Msa1391100	0.829073	6.310521e-55	-8.615850e-47
Msa0405520	Msa1391100	0.866149	3.522200e-65	-8.615850e-47
Msa0405530	Msa1391100	0.844068	9.502400e-59	-8.615850e-47
Msa0983630	Msa1391100	0.899374	2.110633e-77	-8.615850e-47
Msa0983640	Msa1391100	0.857312	1.778746e-62	-8.615850e-47
Msa0983720	Msa1391100	0.806636	7.470862e-50	-8.615850e-47
Msa1022050	Msa1391100	0.884620	1.641696e-71	-8.615850e-47
Msa1022060	Msa1391100	0.821962	3.054900e-53	-8.615850e-47
Msa1064410	Msa1391100	0.852132	5.640118e-61	-8.615850e-47
Msa1086070	Msa1391100	0.804313	2.293880e-49	-8.615850e-47
Msa1086080	Msa1391100	0.833374	5.533529e-56	-8.615850e-47
Msa1086090	Msa1391100	0.826128	3.214466e-54	-8.615850e-47
Msa1086100	Msa1391100	0.830926	2.230763e-55	-8.615850e-47
Msa1086140	Msa1391100	0.848799	4.868867e-60	-8.615850e-47
Msa1086150	Msa1391100	0.806837	6.776463e-50	-8.615850e-47
Msa1086180	Msa1391100	0.802393	5.730679e-49	-8.615850e-47
Msa1086190	Msa1391100	0.848880	4.622528e-60	-8.615850e-47
Msa1086200	Msa1391100	0.815810	7.638664e-52	-8.615850e-47
Msa1086210	Msa1391100	0.825469	4.609592e-54	-8.615850e-47
Msa1086250	Msa1391100	0.811229	7.771166e-51	-8.615850e-47
Msa1086260	Msa1391100	0.802947	4.405677e-49	-8.615850e-47
Msa1086270	Msa1391100	0.828553	8.432567e-55	-8.615850e-47
Msa1086280	Msa1391100	0.809106	2.229017e-50	-8.615850e-47
Msa1086380	Msa1391100	0.811189	7.927174e-51	-8.615850e-47
Msa1086450	Msa1391100	0.809640	1.712330e-50	-8.615850e-47
Msa1086470	Msa1391100	0.803661	3.134589e-49	-8.615850e-47
Msa1086550	Msa1391100	0.845224	4.639502e-59	-8.615850e-47
Msa1086560	Msa1391100	0.866559	2.609320e-65	-8.615850e-47
Msa1086590	Msa1391100	0.886981	2.130304e-72	-8.615850e-47
Msa1086600	Msa1391100	0.841918	3.550331e-58	-8.615850e-47
Msa1086720	Msa1391100	0.867723	1.109197e-65	-8.615850e-47
Msa1086730	Msa1391100	0.932031	1.566531e-94	-8.615850e-47
Msa1086740	Msa1391100	0.859188	4.915664e-63	-8.615850e-47
Msa1086790	Msa1391100	0.895426	9.690028e-76	-8.615850e-47
Msa1086800	Msa1391100	0.869657	2.626742e-66	-8.615850e-47
Msa1086880	Msa1391100	0.822063	2.894213e-53	-8.615850e-47
Msa1086890	Msa1391100	0.834394	3.074362e-56	-8.615850e-47
Msa1086900	Msa1391100	0.802834	4.647099e-49	-8.615850e-47
Msa1086910	Msa1391100	0.814374	1.592045e-51	-8.615850e-47
Msa1086960	Msa1391100	0.874865	4.836102e-68	-8.615850e-47
Msa1086970	Msa1391100	0.856476	3.135654e-62	-8.615850e-47
Msa1087030	Msa1391100	0.845110	4.981147e-59	-8.615850e-47
Msa1087040	Msa1391100	0.916019	2.943882e-85	-8.615850e-47
Msa1087050	Msa1391100	0.859046	5.421659e-63	-8.615850e-47
Msa1087110	Msa1391100	0.891947	2.492216e-74	-8.615850e-47
Msa1087120	Msa1391100	0.866939	1.975248e-65	-8.615850e-47
Msa0263770	Msa1391100	0.854385	1.274886e-61	-8.615850e-47
Msa0268170	Msa1391100	0.809963	1.458870e-50	-8.615850e-47
Msa0268250	Msa1391100	0.871069	9.048937e-67	-8.615850e-47
Msa0268260	Msa1391100	0.914632	1.526946e-84	-8.615850e-47
Msa0268270	Msa1391100	0.862215	5.933888e-64	-8.615850e-47
Msa0268300	Msa1391100	0.869155	3.825499e-66	-8.615850e-47
Msa0268310	Msa1391100	0.883122	5.860332e-71	-8.615850e-47
Msa0268390	Msa1391100	0.807503	4.895963e-50	-8.615850e-47
Msa0268400	Msa1391100	0.811092	8.322508e-51	-8.615850e-47
Msa0268410	Msa1391100	0.816412	5.604908e-52	-8.615850e-47
Msa0268550	Msa1391100	0.825983	3.481451e-54	-8.615850e-47
Msa0268560	Msa1391100	0.847171	1.368635e-59	-8.615850e-47
Msa0268570	Msa1391100	0.806651	7.416509e-50	-8.615850e-47
Msa0268580	Msa1391100	0.833331	5.671032e-56	-8.615850e-47
Msa0268630	Msa1391100	0.837962	3.814211e-57	-8.615850e-47
Msa0268640	Msa1391100	0.823477	1.356234e-53	-8.615850e-47
Msa0268740	Msa1391100	0.833100	6.475450e-56	-8.615850e-47
Msa0268750	Msa1391100	0.813544	2.425366e-51	-8.615850e-47
Msa0268760	Msa1391100	0.830153	3.447183e-55	-8.615850e-47
Msa0268830	Msa1391100	0.846384	2.247507e-59	-8.615850e-47
Msa0268840	Msa1391100	0.826410	2.755073e-54	-8.615850e-47
Msa0268940	Msa1391100	0.806719	7.175062e-50	-8.615850e-47
Msa0268950	Msa1391100	0.817991	2.474729e-52	-8.615850e-47
Msa0268960	Msa1391100	0.823988	1.029575e-53	-8.615850e-47
Msa0269040	Msa1391100	0.849160	3.864733e-60	-8.615850e-47
Msa0269050	Msa1391100	0.826870	2.140077e-54	-8.615850e-47
Msa0269130	Msa1391100	0.860560	1.896616e-63	-8.615850e-47
Msa0269140	Msa1391100	0.925785	1.144551e-90	-8.615850e-47
Msa0269150	Msa1391100	0.869967	2.081548e-66	-8.615850e-47
Msa0344180	Msa1391100	0.839579	1.456014e-57	-8.615850e-47
Msa0344190	Msa1391100	0.828533	8.528681e-55	-8.615850e-47
Msa0344300	Msa1391100	0.806069	9.836650e-50	-8.615850e-47
Msa0344310	Msa1391100	0.844143	9.072793e-59	-8.615850e-47
Msa1143120	Msa1391100	0.839349	1.671081e-57	-8.615850e-47
Msa1143130	Msa1391100	0.813209	2.873703e-51	-8.615850e-47
Msa1143160	Msa1391100	0.819450	1.153906e-52	-8.615850e-47
Msa1143170	Msa1391100	0.817588	3.051286e-52	-8.615850e-47
Msa1143180	Msa1391100	0.822259	2.607061e-53	-8.615850e-47
Msa0582510	Msa1391100	0.843111	1.712818e-58	-8.615850e-47
Msa0582520	Msa1391100	0.806141	9.500477e-50	-8.615850e-47
Msa0582630	Msa1391100	0.825702	4.059238e-54	-8.615850e-47
Msa0582640	Msa1391100	0.844734	6.291197e-59	-8.615850e-47
Msa0582650	Msa1391100	0.812137	4.932093e-51	-8.615850e-47
Msa0582660	Msa1391100	0.831277	1.828723e-55	-8.615850e-47
Msa0582690	Msa1391100	0.838921	2.157140e-57	-8.615850e-47
Msa0582700	Msa1391100	0.817223	3.685351e-52	-8.615850e-47
Msa0582750	Msa1391100	0.819619	1.056188e-52	-8.615850e-47
Msa0582760	Msa1391100	0.827689	1.361566e-54	-8.615850e-47
Msa0582780	Msa1391100	0.832396	9.681955e-56	-8.615850e-47
Msa0582810	Msa1391100	0.837476	5.081813e-57	-8.615850e-47
Msa0582820	Msa1391100	0.835801	1.358387e-56	-8.615850e-47
Msa0582910	Msa1391100	0.832458	9.347612e-56	-8.615850e-47
Msa0582920	Msa1391100	0.820393	7.025519e-53	-8.615850e-47
Msa0582930	Msa1391100	0.835687	1.451239e-56	-8.615850e-47
Msa0591290	Msa1391100	0.850666	1.464827e-60	-8.615850e-47
Msa0591310	Msa1391100	0.843006	1.826216e-58	-8.615850e-47
Msa0591350	Msa1391100	0.866099	3.650776e-65	-8.615850e-47
Msa0591360	Msa1391100	0.828913	6.903092e-55	-8.615850e-47
Msa0591370	Msa1391100	0.804819	1.798708e-49	-8.615850e-47
Msa0591380	Msa1391100	0.816506	5.340275e-52	-8.615850e-47
Msa0867680	Msa1391100	0.865674	4.976024e-65	-8.615850e-47
Msa0867690	Msa1391100	0.837066	6.470245e-57	-8.615850e-47
Msa0876520	Msa1391100	0.822020	2.961353e-53	-8.615850e-47
Msa0908220	Msa1391100	0.861849	7.685422e-64	-8.615850e-47
Msa0908230	Msa1391100	0.907505	4.714395e-81	-8.615850e-47
Msa0908240	Msa1391100	0.853729	1.970577e-61	-8.615850e-47
Msa0908310	Msa1391100	0.921415	3.684262e-88	-8.615850e-47
Msa0908320	Msa1391100	0.845032	5.230694e-59	-8.615850e-47
Msa0908370	Msa1391100	0.899283	2.309605e-77	-8.615850e-47
Msa0908380	Msa1391100	0.819347	1.217965e-52	-8.615850e-47
Msa0908430	Msa1391100	0.836738	7.847510e-57	-8.615850e-47
Msa0908440	Msa1391100	0.922311	1.159774e-88	-8.615850e-47
Msa0908450	Msa1391100	0.865760	4.673233e-65	-8.615850e-47
Msa0908480	Msa1391100	0.807084	6.006212e-50	-8.615850e-47
Msa0908530	Msa1391100	0.898889	3.406670e-77	-8.615850e-47
Msa0908540	Msa1391100	0.855302	6.909528e-62	-8.615850e-47
Msa0908590	Msa1391100	0.837165	6.104787e-57	-8.615850e-47
Msa0908600	Msa1391100	0.912300	2.279819e-83	-8.615850e-47
Msa0908610	Msa1391100	0.815906	7.271909e-52	-8.615850e-47
Msa0908650	Msa1391100	0.841235	5.373222e-58	-8.615850e-47
Msa0908660	Msa1391100	0.915705	4.284168e-85	-8.615850e-47
Msa0908670	Msa1391100	0.868411	6.661696e-66	-8.615850e-47
Msa0908720	Msa1391100	0.897462	1.373875e-76	-8.615850e-47
Msa0908730	Msa1391100	0.855927	4.540012e-62	-8.615850e-47
Msa0911190	Msa1391100	0.830492	2.848613e-55	-8.615850e-47
Msa0911200	Msa1391100	0.822255	2.612326e-53	-8.615850e-47
Msa0911230	Msa1391100	0.815817	7.613269e-52	-8.615850e-47
Msa0924830	Msa1391100	0.821864	3.217728e-53	-8.615850e-47
Msa0924870	Msa1391100	0.815024	1.142435e-51	-8.615850e-47
Msa0924880	Msa1391100	0.818517	1.880692e-52	-8.615850e-47
Msa0924890	Msa1391100	0.805118	1.557739e-49	-8.615850e-47
Msa0924930	Msa1391100	0.900131	9.954048e-78	-8.615850e-47
Msa0924940	Msa1391100	0.849215	3.731265e-60	-8.615850e-47
Msa0925100	Msa1391100	0.852540	4.317234e-61	-8.615850e-47
Msa0925110	Msa1391100	0.847846	8.928252e-60	-8.615850e-47
Msa0931070	Msa1391100	0.835863	1.310021e-56	-8.615850e-47
Msa0931080	Msa1391100	0.811936	5.456807e-51	-8.615850e-47
Msa0931130	Msa1391100	0.838485	2.796444e-57	-8.615850e-47
Msa0931140	Msa1391100	0.811025	8.606617e-51	-8.615850e-47
Msa0931210	Msa1391100	0.816564	5.183141e-52	-8.615850e-47
Msa0931220	Msa1391100	0.828493	8.719344e-55	-8.615850e-47
Msa0931230	Msa1391100	0.803698	3.079326e-49	-8.615850e-47
Msa0931240	Msa1391100	0.839359	1.661027e-57	-8.615850e-47
Msa0931260	Msa1391100	0.848508	5.860107e-60	-8.615850e-47
Msa0931270	Msa1391100	0.820467	6.754033e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391100	MtrunA17_CPg0492421	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1391100	MtrunA17_Chr4g0016101	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1391100	MtrunA17_Chr3g0090841	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1391100	MtrunA17_Chr4g0002541	83.333	60	10	0	1	60	1	60	3.60e-30	103
Msa1391100	MtrunA17_Chr4g0057401	87.500	40	5	0	92	131	1	40	1.06e-17	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391100	ATCG00900.1	95.420	131	6	0	1	131	25	155	7.02e-91	260
Msa1391100	ATCG01240.1	95.420	131	6	0	1	131	25	155	7.02e-91	260
Msa1391100	ATMG01270.1	33.824	136	80	3	2	131	15	146	3.86e-18	75.5
Msa1391100	AT2G07696.1	33.824	136	80	3	2	131	15	146	3.86e-18	75.5

Find 25 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGCCATTCGTTGGTTATT+AGG	0.268444	tig0021410:-24078	Msa1391100:CDS
CATCAAGTTCCCGTTGAAAT+AGG	0.307921	tig0021410:-24120	Msa1391100:CDS
AAAACGTCCAGGTCGAAATA+TGG	0.317789	tig0021410:-24046	Msa1391100:CDS
CAAATTAAGTTCCGAATTAG+TGG	0.342047	tig0021410:-24019	Msa1391100:CDS
TGGCGATGCCATACGCAAAA+AGG	0.366109	tig0021410:-23980	Msa1391100:CDS
TTTGGCAGCATCCACTAATT+CGG	0.404543	tig0021410:+24008	None:intergenic
ACGTATTGCTTGACGTAAAA+CGG	0.405511	tig0021410:+24194	None:intergenic
GCTTGACGTAAAACGGATAG+TGG	0.418362	tig0021410:+24201	None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG	0.427761	tig0021410:-24150	Msa1391100:CDS
TATGGCATCGCCATTCCCTT+TGG	0.436234	tig0021410:+23990	None:intergenic
TGTGTGGATCCTATTTCAAC+GGG	0.470768	tig0021410:+24111	None:intergenic
TTATCTATCGAGCTATGAAA+AGG	0.512086	tig0021410:-24248	Msa1391100:CDS
GAAAAGCACTTGCCATTCGT+TGG	0.526859	tig0021410:-24086	Msa1391100:CDS
GTGGATGCTGCCAAAGGGAA+TGG	0.532446	tig0021410:-24000	Msa1391100:CDS
GGCGCATCCCGAAAACGTCC+AGG	0.540732	tig0021410:-24057	Msa1391100:CDS
AAAGGAAGAGACTCATAGAA+TGG	0.548096	tig0021410:-23962	Msa1391100:CDS
TTGTGTGGATCCTATTTCAA+CGG	0.548545	tig0021410:+24110	None:intergenic
AATTAGTGGATGCTGCCAAA+GGG	0.575951	tig0021410:-24005	Msa1391100:CDS
GAATTAGTGGATGCTGCCAA+AGG	0.584526	tig0021410:-24006	Msa1391100:CDS
AGAGACTCATAGAATGGCAG+AGG	0.593635	tig0021410:-23956	Msa1391100:CDS
TTGAAAGCCATATTTCGACC+TGG	0.605724	tig0021410:+24039	None:intergenic
TGCGCCTAATAACCAACGAA+TGG	0.620213	tig0021410:+24074	None:intergenic
GTTAACCGTATTATGAAACA+CGG	0.650772	tig0021410:-24294	Msa1391100:CDS
TTTACGTCAAGCAATACGTG+GGG	0.715577	tig0021410:-24190	Msa1391100:CDS
GTTGAAATAGGATCCACACA+AGG	0.731975	tig0021410:-24108	Msa1391100:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTTTCCGTGTTTCATAATA+CGG	+	tig0021410:23941-23960	None:intergenic	25.0%
	GTTAACCGTATTATGAAACA+CGG	-	tig0021410:23933-23952	Msa1391100:CDS	30.0%
	GAAACACGGAAAAAAATCAT+TGG	-	tig0021410:23947-23966	Msa1391100:CDS	30.0%
	TTATCTATCGAGCTATGAAA+AGG	-	tig0021410:23979-23998	Msa1391100:CDS	30.0%
!!	TCTTGCTTTTACTGCTATAT+CGG	+	tig0021410:24069-24088	None:intergenic	30.0%
	CAAATTAAGTTCCGAATTAG+TGG	-	tig0021410:24208-24227	Msa1391100:CDS	30.0%
	ACGTATTGCTTGACGTAAAA+CGG	+	tig0021410:24036-24055	None:intergenic	35.0%
!	TTTTACGTCAAGCAATACGT+GGG	-	tig0021410:24036-24055	Msa1391100:CDS	35.0%
!!	CTTGCTTTTACTGCTATATC+GGG	+	tig0021410:24068-24087	None:intergenic	35.0%
	TTGTGTGGATCCTATTTCAA+CGG	+	tig0021410:24120-24139	None:intergenic	35.0%
	AAAGGAAGAGACTCATAGAA+TGG	-	tig0021410:24265-24284	Msa1391100:CDS	35.0%
!	GTTTTACGTCAAGCAATACG+TGG	-	tig0021410:24035-24054	Msa1391100:CDS	40.0%
	TTTACGTCAAGCAATACGTG+GGG	-	tig0021410:24037-24056	Msa1391100:CDS	40.0%
	GTAAAAGCAAGACGCGTAAA+CGG	-	tig0021410:24077-24096	Msa1391100:CDS	40.0%
	CATCAAGTTCCCGTTGAAAT+AGG	-	tig0021410:24107-24126	Msa1391100:CDS	40.0%
	TGTGTGGATCCTATTTCAAC+GGG	+	tig0021410:24119-24138	None:intergenic	40.0%
	GTTGAAATAGGATCCACACA+AGG	-	tig0021410:24119-24138	Msa1391100:CDS	40.0%
!	CTTGCCATTCGTTGGTTATT+AGG	-	tig0021410:24149-24168	Msa1391100:CDS	40.0%
!	TATTTCGACCTGGACGTTTT+CGG	+	tig0021410:24181-24200	None:intergenic	40.0%
	AAAACGTCCAGGTCGAAATA+TGG	-	tig0021410:24181-24200	Msa1391100:CDS	40.0%
	TTGAAAGCCATATTTCGACC+TGG	+	tig0021410:24191-24210	None:intergenic	40.0%
	TTTGGCAGCATCCACTAATT+CGG	+	tig0021410:24222-24241	None:intergenic	40.0%
!	AATTAGTGGATGCTGCCAAA+GGG	-	tig0021410:24222-24241	Msa1391100:CDS	40.0%
!	AGTCTCTTCCTTTTTGCGTA+TGG	+	tig0021410:24258-24277	None:intergenic	40.0%
	GCTTGACGTAAAACGGATAG+TGG	+	tig0021410:24029-24048	None:intergenic	45.0%
!!	GAAAAGCACTTGCCATTCGT+TGG	-	tig0021410:24141-24160	Msa1391100:CDS	45.0%
	TGCGCCTAATAACCAACGAA+TGG	+	tig0021410:24156-24175	None:intergenic	45.0%
!	ATTTCGACCTGGACGTTTTC+GGG	+	tig0021410:24180-24199	None:intergenic	45.0%
!	GAATTAGTGGATGCTGCCAA+AGG	-	tig0021410:24221-24240	Msa1391100:CDS	45.0%
	AGAGACTCATAGAATGGCAG+AGG	-	tig0021410:24271-24290	Msa1391100:CDS	45.0%
!	GGCAAGTGCTTTTCCTTGTG+TGG	+	tig0021410:24135-24154	None:intergenic	50.0%
	TATGGCATCGCCATTCCCTT+TGG	+	tig0021410:24240-24259	None:intergenic	50.0%
	TGGCGATGCCATACGCAAAA+AGG	-	tig0021410:24247-24266	Msa1391100:CDS	50.0%
	GTGGATGCTGCCAAAGGGAA+TGG	-	tig0021410:24227-24246	Msa1391100:CDS	55.0%
	GGCGCATCCCGAAAACGTCC+AGG	-	tig0021410:24170-24189	Msa1391100:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0021410	gene	23927	24322	23927	ID=Msa1391100;Name=Msa1391100
tig0021410	mRNA	23927	24322	23927	ID=Msa1391100-mRNA-1;Parent=Msa1391100;Name=Msa1391100-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|131
tig0021410	exon	23927	24322	23927	ID=Msa1391100-mRNA-1:exon:12542;Parent=Msa1391100-mRNA-1
tig0021410	CDS	23927	24322	23927	ID=Msa1391100-mRNA-1:cds;Parent=Msa1391100-mRNA-1

Gene Sequence

>Msa1391100

ATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

>Msa1391100

MLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFR*