AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087110 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1087110 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1087110 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1087110 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1087110 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1087110 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1087110 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1087110 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1087110 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1087110 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087110 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1087110 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1087110 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1087110 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1087110 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1087110 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 7_2:-87732048 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 7_2:+87734234 Msa1087110:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 7_2:+87733280 Msa1087110:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 7_2:+87734308 Msa1087110:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 7_2:+87732926 Msa1087110:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 7_2:-87733268 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 7_2:+87734335 Msa1087110:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 7_2:+87732111 Msa1087110:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 7_2:+87734374 Msa1087110:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 7_2:-87733860 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 7_2:+87733297 Msa1087110:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 7_2:-87734346 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 7_2:-87734160 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 7_2:-87733887 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 7_2:-87734153 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 7_2:-87732047 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 7_2:+87734204 Msa1087110:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 7_2:-87734364 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 7_2:-87733265 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 7_2:-87733306 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 7_2:-87733264 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 7_2:+87733263 Msa1087110:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 7_2:-87732087 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 7_2:-87732066 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 7_2:-87734243 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 7_2:-87732075 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 7_2:-87732918 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 7_2:-87733859 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 7_2:+87733860 Msa1087110:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 7_2:+87734106 Msa1087110:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 7_2:+87732015 Msa1087110:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 7_2:-87732095 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 7_2:+87733262 Msa1087110:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 7_2:+87734354 Msa1087110:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 7_2:+87734038 Msa1087110:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 7_2:+87734297 Msa1087110:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 7_2:+87734392 Msa1087110:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 7_2:-87734244 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 7_2:-87732103 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 7_2:-87734737 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 7_2:+87733787 Msa1087110:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 7_2:-87734906 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 7_2:+87734890 Msa1087110:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 7_2:+87734349 Msa1087110:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 7_2:+87732016 Msa1087110:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 7_2:+87734348 Msa1087110:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 7_2:+87733834 Msa1087110:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 7_2:+87732934 Msa1087110:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 7_2:+87733788 Msa1087110:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 7_2:+87734398 Msa1087110:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 7_2:+87733873 Msa1087110:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 7_2:-87732088 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 7_2:-87734315 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 7_2:-87732045 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 7_2:+87733852 Msa1087110:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 7_2:-87732908 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 7_2:+87733264 Msa1087110:CDS
AGGACCATATAATATTTATG+GGG 0.632114 7_2:-87732046 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 7_2:-87732072 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 7_2:-87732885 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 7_2:+87733810 Msa1087110:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 7_2:+87734873 Msa1087110:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 7_2:+87734060 Msa1087110:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 7_2:+87733789 Msa1087110:intron
GACCATATAATATTTATGGG+GGG 0.666516 7_2:-87732044 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 7_2:-87732086 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 7_2:-87733828 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 7_2:+87734164 Msa1087110:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 7_2:+87734246 Msa1087110:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 7_2:-87732882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - chr7_2:87732297-87732316 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + chr7_2:87732306-87732325 Msa1087110:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - chr7_2:87732672-87732691 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - chr7_2:87732673-87732692 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + chr7_2:87732676-87732695 Msa1087110:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + chr7_2:87732307-87732326 Msa1087110:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + chr7_2:87733112-87733131 Msa1087110:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - chr7_2:87733943-87733962 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - chr7_2:87733944-87733963 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - chr7_2:87733945-87733964 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + chr7_2:87734619-87734638 Msa1087110:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - chr7_2:87732050-87732069 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - chr7_2:87732051-87732070 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + chr7_2:87732359-87732378 Msa1087110:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - chr7_2:87732509-87732528 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + chr7_2:87732509-87732528 Msa1087110:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - chr7_2:87732854-87732873 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr7_2:87733473-87733492 Msa1087110:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + chr7_2:87733518-87733537 Msa1087110:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + chr7_2:87733941-87733960 Msa1087110:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + chr7_2:87734516-87734535 Msa1087110:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + chr7_2:87734610-87734629 Msa1087110:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + chr7_2:87734630-87734649 Msa1087110:intron 20.0%
! AGGACCATATAATATTTATG+GGG - chr7_2:87732049-87732068 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTCTCGAA+GGG - chr7_2:87732240-87732259 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + chr7_2:87732349-87732368 Msa1087110:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + chr7_2:87732365-87732384 Msa1087110:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - chr7_2:87732414-87732433 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - chr7_2:87732460-87732479 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - chr7_2:87732508-87732527 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + chr7_2:87732526-87732545 Msa1087110:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - chr7_2:87732631-87732650 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - chr7_2:87732632-87732651 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - chr7_2:87732752-87732771 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - chr7_2:87732753-87732772 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - chr7_2:87732754-87732773 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + chr7_2:87732855-87732874 Msa1087110:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - chr7_2:87732860-87732879 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - chr7_2:87732997-87733016 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr7_2:87733220-87733239 Msa1087110:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr7_2:87733296-87733315 Msa1087110:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr7_2:87733297-87733316 Msa1087110:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr7_2:87733364-87733383 Msa1087110:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr7_2:87733374-87733393 Msa1087110:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr7_2:87733437-87733456 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + chr7_2:87733519-87733538 Msa1087110:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr7_2:87733573-87733592 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr7_2:87733773-87733792 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - chr7_2:87733924-87733943 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - chr7_2:87734030-87734049 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + chr7_2:87734038-87734057 Msa1087110:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - chr7_2:87734068-87734087 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - chr7_2:87734502-87734521 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - chr7_2:87734789-87734808 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + chr7_2:87734873-87734892 Msa1087110:CDS 25.0%
GACCATATAATATTTATGGG+GGG - chr7_2:87732047-87732066 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - chr7_2:87732048-87732067 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + chr7_2:87732131-87732150 Msa1087110:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + chr7_2:87732132-87732151 Msa1087110:CDS 30.0%
!!! CAGTTTTTTTTTTCTCGAAG+GGG - chr7_2:87732239-87732258 None:intergenic 30.0%
!!! GTCAGTTTTTTTTTTCTCGA+AGG - chr7_2:87732241-87732260 None:intergenic 30.0%
TAGTTAATCCTATTTCGGAT+AGG - chr7_2:87732409-87732428 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + chr7_2:87732409-87732428 Msa1087110:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - chr7_2:87732459-87732478 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - chr7_2:87732461-87732480 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - chr7_2:87732626-87732645 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - chr7_2:87732666-87732685 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + chr7_2:87732720-87732739 Msa1087110:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + chr7_2:87732797-87732816 Msa1087110:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr7_2:87733353-87733372 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr7_2:87733354-87733373 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr7_2:87733352-87733371 Msa1087110:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr7_2:87733369-87733388 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr7_2:87733367-87733386 Msa1087110:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr7_2:87733373-87733392 Msa1087110:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr7_2:87733763-87733782 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr7_2:87733787-87733806 Msa1087110:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr7_2:87733889-87733908 Msa1087110:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - chr7_2:87734016-87734035 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - chr7_2:87734025-87734044 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + chr7_2:87734060-87734079 Msa1087110:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + chr7_2:87734074-87734093 Msa1087110:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + chr7_2:87734106-87734125 Msa1087110:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - chr7_2:87734196-87734215 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + chr7_2:87734335-87734354 Msa1087110:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + chr7_2:87734474-87734493 Msa1087110:intron 30.0%
TATGGATCCATACATAACAT+AGG - chr7_2:87734484-87734503 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + chr7_2:87734490-87734509 Msa1087110:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + chr7_2:87734564-87734583 Msa1087110:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - chr7_2:87734740-87734759 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + chr7_2:87734739-87734758 Msa1087110:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + chr7_2:87734756-87734775 Msa1087110:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - chr7_2:87734778-87734797 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - chr7_2:87734830-87734849 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + chr7_2:87734830-87734849 Msa1087110:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + chr7_2:87732042-87732061 Msa1087110:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + chr7_2:87732111-87732130 Msa1087110:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + chr7_2:87732138-87732157 Msa1087110:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + chr7_2:87732139-87732158 Msa1087110:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + chr7_2:87732256-87732275 Msa1087110:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - chr7_2:87732333-87732352 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - chr7_2:87732665-87732684 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + chr7_2:87732784-87732803 Msa1087110:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - chr7_2:87732790-87732809 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - chr7_2:87732888-87732907 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr7_2:87733151-87733170 Msa1087110:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr7_2:87733179-87733198 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr7_2:87733351-87733370 Msa1087110:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr7_2:87733575-87733594 Msa1087110:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr7_2:87733603-87733622 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr7_2:87733605-87733624 Msa1087110:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr7_2:87733673-87733692 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr7_2:87733683-87733702 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr7_2:87733684-87733703 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr7_2:87733741-87733760 Msa1087110:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - chr7_2:87733762-87733781 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr7_2:87733786-87733805 Msa1087110:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr7_2:87733788-87733807 Msa1087110:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr7_2:87733890-87733909 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr7_2:87733888-87733907 Msa1087110:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr7_2:87733890-87733909 Msa1087110:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - chr7_2:87734163-87734182 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + chr7_2:87734163-87734182 Msa1087110:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - chr7_2:87734195-87734214 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - chr7_2:87734247-87734266 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + chr7_2:87734392-87734411 Msa1087110:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + chr7_2:87734439-87734458 Msa1087110:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + chr7_2:87734775-87734794 Msa1087110:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - chr7_2:87732233-87732252 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - chr7_2:87732268-87732287 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + chr7_2:87732539-87732558 Msa1087110:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - chr7_2:87732570-87732589 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - chr7_2:87732585-87732604 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + chr7_2:87732590-87732609 Msa1087110:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - chr7_2:87732597-87732616 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - chr7_2:87732664-87732683 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - chr7_2:87732783-87732802 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - chr7_2:87732837-87732856 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - chr7_2:87732841-87732860 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - chr7_2:87732962-87732981 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + chr7_2:87732961-87732980 Msa1087110:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr7_2:87733309-87733328 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr7_2:87733330-87733349 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + chr7_2:87733523-87733542 Msa1087110:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr7_2:87733682-87733701 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr7_2:87733693-87733712 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr7_2:87733703-87733722 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr7_2:87733733-87733752 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr7_2:87733747-87733766 Msa1087110:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr7_2:87733789-87733808 Msa1087110:intron 40.0%
ACAATGTGATATCTCACACC+AGG - chr7_2:87733831-87733850 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr7_2:87733834-87733853 Msa1087110:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + chr7_2:87734162-87734181 Msa1087110:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + chr7_2:87734164-87734183 Msa1087110:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + chr7_2:87734204-87734223 Msa1087110:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + chr7_2:87734234-87734253 Msa1087110:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - chr7_2:87734246-87734265 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + chr7_2:87734246-87734265 Msa1087110:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + chr7_2:87734276-87734295 Msa1087110:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - chr7_2:87734308-87734327 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + chr7_2:87734308-87734327 Msa1087110:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - chr7_2:87734318-87734337 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - chr7_2:87734349-87734368 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + chr7_2:87734349-87734368 Msa1087110:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - chr7_2:87734385-87734404 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - chr7_2:87734454-87734473 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + chr7_2:87734583-87734602 Msa1087110:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + chr7_2:87734584-87734603 Msa1087110:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + chr7_2:87732015-87732034 Msa1087110:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - chr7_2:87732069-87732088 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - chr7_2:87732089-87732108 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - chr7_2:87732090-87732109 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - chr7_2:87732098-87732117 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - chr7_2:87732106-87732125 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + chr7_2:87732398-87732417 Msa1087110:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - chr7_2:87732571-87732590 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - chr7_2:87732663-87732682 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + chr7_2:87732875-87732894 Msa1087110:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + chr7_2:87732879-87732898 Msa1087110:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - chr7_2:87732885-87732904 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - chr7_2:87732933-87732952 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - chr7_2:87732934-87732953 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - chr7_2:87732935-87732954 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + chr7_2:87732934-87732953 Msa1087110:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + chr7_2:87733280-87733299 Msa1087110:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr7_2:87733384-87733403 Msa1087110:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + chr7_2:87733528-87733547 Msa1087110:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr7_2:87733545-87733564 Msa1087110:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr7_2:87733618-87733637 Msa1087110:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr7_2:87733793-87733812 Msa1087110:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr7_2:87733794-87733813 Msa1087110:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr7_2:87733810-87733829 Msa1087110:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr7_2:87733862-87733881 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + chr7_2:87733968-87733987 Msa1087110:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - chr7_2:87734156-87734175 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + chr7_2:87734268-87734287 Msa1087110:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - chr7_2:87734283-87734302 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - chr7_2:87734307-87734326 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + chr7_2:87734348-87734367 Msa1087110:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + chr7_2:87734398-87734417 Msa1087110:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + chr7_2:87734585-87734604 Msa1087110:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - chr7_2:87734909-87734928 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + chr7_2:87732016-87732035 Msa1087110:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - chr7_2:87732037-87732056 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - chr7_2:87732075-87732094 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - chr7_2:87732078-87732097 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - chr7_2:87732091-87732110 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + chr7_2:87732178-87732197 Msa1087110:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - chr7_2:87732214-87732233 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - chr7_2:87732662-87732681 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr7_2:87733312-87733331 Msa1087110:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr7_2:87733587-87733606 Msa1087110:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr7_2:87733626-87733645 Msa1087110:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr7_2:87733718-87733737 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr7_2:87733800-87733819 Msa1087110:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr7_2:87733863-87733882 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr7_2:87733860-87733879 Msa1087110:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr7_2:87733873-87733892 Msa1087110:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - chr7_2:87733972-87733991 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - chr7_2:87734262-87734281 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - chr7_2:87734367-87734386 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + chr7_2:87734374-87734393 Msa1087110:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - chr7_2:87732190-87732209 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - chr7_2:87732193-87732212 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - chr7_2:87732228-87732247 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - chr7_2:87732229-87732248 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - chr7_2:87732660-87732679 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - chr7_2:87732661-87732680 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr7_2:87733262-87733281 Msa1087110:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr7_2:87733263-87733282 Msa1087110:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - chr7_2:87733271-87733290 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr7_2:87733714-87733733 Msa1087110:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr7_2:87733852-87733871 Msa1087110:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - chr7_2:87733973-87733992 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + chr7_2:87733973-87733992 Msa1087110:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + chr7_2:87734354-87734373 Msa1087110:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + chr7_2:87734890-87734909 Msa1087110:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - chr7_2:87732227-87732246 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - chr7_2:87732911-87732930 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - chr7_2:87732928-87732947 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + chr7_2:87732926-87732945 Msa1087110:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - chr7_2:87733267-87733286 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + chr7_2:87733264-87733283 Msa1087110:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - chr7_2:87733268-87733287 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - chr7_2:87732921-87732940 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + chr7_2:87734297-87734316 Msa1087110:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87732001 87734930 87732001 ID=Msa1087110;Name=Msa1087110
chr7_2 mRNA 87732001 87734930 87732001 ID=Msa1087110-mRNA-1;Parent=Msa1087110;Name=Msa1087110-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
chr7_2 exon 87732001 87732153 87732001 ID=Msa1087110-mRNA-1:exon:23990;Parent=Msa1087110-mRNA-1
chr7_2 exon 87732875 87732964 87732875 ID=Msa1087110-mRNA-1:exon:23991;Parent=Msa1087110-mRNA-1
chr7_2 exon 87733225 87733318 87733225 ID=Msa1087110-mRNA-1:exon:23992;Parent=Msa1087110-mRNA-1
chr7_2 exon 87733802 87733894 87733802 ID=Msa1087110-mRNA-1:exon:23993;Parent=Msa1087110-mRNA-1
chr7_2 exon 87734049 87734285 87734049 ID=Msa1087110-mRNA-1:exon:23994;Parent=Msa1087110-mRNA-1
chr7_2 exon 87734298 87734444 87734298 ID=Msa1087110-mRNA-1:exon:23995;Parent=Msa1087110-mRNA-1
chr7_2 exon 87734737 87734930 87734737 ID=Msa1087110-mRNA-1:exon:23996;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87732001 87732153 87732001 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87732875 87732964 87732875 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87733225 87733318 87733225 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87733802 87733894 87733802 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87734049 87734285 87734049 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87734298 87734444 87734298 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
chr7_2 CDS 87734737 87734930 87734737 ID=Msa1087110-mRNA-1:cds;Parent=Msa1087110-mRNA-1
Gene Sequence

>Msa1087110

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1087110

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI