Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908610 | AES69829.1 | 75.581 | 172 | 11 | 2 | 1 | 149 | 1 | 164 | 3.78e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908610 | sp|A4GYN8|RR12B_POPTR | 94.681 | 94 | 5 | 0 | 61 | 154 | 39 | 132 | 3.30e-57 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126750 | Msa0908610 | 0.815397 | 9.439361e-52 | -8.615850e-47 |
| Msa0202640 | Msa0908610 | 0.838704 | 2.454715e-57 | -8.615850e-47 |
| Msa0221840 | Msa0908610 | 0.804815 | 1.801833e-49 | -8.615850e-47 |
| Msa0405420 | Msa0908610 | 0.829061 | 6.355220e-55 | -8.615850e-47 |
| Msa0405430 | Msa0908610 | 0.815771 | 7.792504e-52 | -8.615850e-47 |
| Msa0405440 | Msa0908610 | 0.905807 | 2.905520e-80 | -8.615850e-47 |
| Msa0405510 | Msa0908610 | 0.821462 | 3.986478e-53 | -8.615850e-47 |
| Msa0405530 | Msa0908610 | 0.925593 | 1.486451e-90 | -8.615850e-47 |
| Msa0263770 | Msa0908610 | 0.846832 | 1.695702e-59 | -8.615850e-47 |
| Msa0268190 | Msa0908610 | 0.819687 | 1.019155e-52 | -8.615850e-47 |
| Msa0268210 | Msa0908610 | 0.821480 | 3.948270e-53 | -8.615850e-47 |
| Msa0268250 | Msa0908610 | 0.815867 | 7.419806e-52 | -8.615850e-47 |
| Msa0268260 | Msa0908610 | 0.803581 | 3.256176e-49 | -8.615850e-47 |
| Msa0268270 | Msa0908610 | 0.922057 | 1.611036e-88 | -8.615850e-47 |
| Msa0268300 | Msa0908610 | 0.864068 | 1.586302e-64 | -8.615850e-47 |
| Msa0268310 | Msa0908610 | 0.815879 | 7.373947e-52 | -8.615850e-47 |
| Msa0268430 | Msa0908610 | 0.823506 | 1.335508e-53 | -8.615850e-47 |
| Msa0268450 | Msa0908610 | 0.813063 | 3.093977e-51 | -8.615850e-47 |
| Msa0268530 | Msa0908610 | 0.801950 | 7.069356e-49 | -8.615850e-47 |
| Msa0268570 | Msa0908610 | 0.831972 | 1.232909e-55 | -8.615850e-47 |
| Msa0268630 | Msa0908610 | 0.824533 | 7.665030e-54 | -8.615850e-47 |
| Msa0268660 | Msa0908610 | 0.806052 | 9.919399e-50 | -8.615850e-47 |
| Msa0268670 | Msa0908610 | 0.816405 | 5.625186e-52 | -8.615850e-47 |
| Msa0268740 | Msa0908610 | 0.814672 | 1.367770e-51 | -8.615850e-47 |
| Msa0268750 | Msa0908610 | 0.848155 | 7.340805e-60 | -8.615850e-47 |
| Msa0268830 | Msa0908610 | 0.849979 | 2.283581e-60 | -8.615850e-47 |
| Msa0268860 | Msa0908610 | 0.822405 | 2.411521e-53 | -8.615850e-47 |
| Msa0268880 | Msa0908610 | 0.809638 | 1.713996e-50 | -8.615850e-47 |
| Msa0268920 | Msa0908610 | 0.800010 | 1.761297e-48 | -8.615850e-47 |
| Msa0268950 | Msa0908610 | 0.808679 | 2.751084e-50 | -8.615850e-47 |
| Msa0268960 | Msa0908610 | 0.853419 | 2.420079e-61 | -8.615850e-47 |
| Msa0269040 | Msa0908610 | 0.842490 | 2.504634e-58 | -8.615850e-47 |
| Msa0269070 | Msa0908610 | 0.821170 | 4.655108e-53 | -8.615850e-47 |
| Msa0269140 | Msa0908610 | 0.828367 | 9.354202e-55 | -8.615850e-47 |
| Msa0269150 | Msa0908610 | 0.946046 | 9.716306e-105 | -8.615850e-47 |
| Msa0344190 | Msa0908610 | 0.805797 | 1.122037e-49 | -8.615850e-47 |
| Msa0344310 | Msa0908610 | 0.817251 | 3.632541e-52 | -8.615850e-47 |
| Msa0484040 | Msa0908610 | 0.819122 | 1.370445e-52 | -8.615850e-47 |
| Msa0582510 | Msa0908610 | 0.837386 | 5.359754e-57 | -8.615850e-47 |
| Msa0582540 | Msa0908610 | 0.815111 | 1.092714e-51 | -8.615850e-47 |
| Msa0582610 | Msa0908610 | 0.800764 | 1.236947e-48 | -8.615850e-47 |
| Msa0582650 | Msa0908610 | 0.839609 | 1.430663e-57 | -8.615850e-47 |
| Msa0582690 | Msa0908610 | 0.836550 | 8.765188e-57 | -8.615850e-47 |
| Msa0582720 | Msa0908610 | 0.804526 | 2.070401e-49 | -8.615850e-47 |
| Msa0582730 | Msa0908610 | 0.811183 | 7.953507e-51 | -8.615850e-47 |
| Msa0582760 | Msa0908610 | 0.811228 | 7.775906e-51 | -8.615850e-47 |
| Msa0582770 | Msa0908610 | 0.848364 | 6.423315e-60 | -8.615850e-47 |
| Msa0582810 | Msa0908610 | 0.841414 | 4.820505e-58 | -8.615850e-47 |
| Msa0582840 | Msa0908610 | 0.814882 | 1.228409e-51 | -8.615850e-47 |
| Msa0582910 | Msa0908610 | 0.813069 | 3.084048e-51 | -8.615850e-47 |
| Msa0582920 | Msa0908610 | 0.850950 | 1.219159e-60 | -8.615850e-47 |
| Msa0591310 | Msa0908610 | 0.837755 | 4.309295e-57 | -8.615850e-47 |
| Msa0591350 | Msa0908610 | 0.876563 | 1.264444e-68 | -8.615850e-47 |
| Msa0591360 | Msa0908610 | 0.804497 | 2.099930e-49 | -8.615850e-47 |
| Msa0591380 | Msa0908610 | 0.820478 | 6.714331e-53 | -8.615850e-47 |
| Msa0867680 | Msa0908610 | 0.874285 | 7.608977e-68 | -8.615850e-47 |
| Msa0867690 | Msa0908610 | 0.831128 | 1.989141e-55 | -8.615850e-47 |
| Msa0876520 | Msa0908610 | 0.838117 | 3.478021e-57 | -8.615850e-47 |
| Msa0908220 | Msa0908610 | 0.833087 | 6.523686e-56 | -8.615850e-47 |
| Msa0908230 | Msa0908610 | 0.843167 | 1.655011e-58 | -8.615850e-47 |
| Msa0908240 | Msa0908610 | 0.950525 | 1.375024e-108 | -8.615850e-47 |
| Msa0908310 | Msa0908610 | 0.880302 | 6.141163e-70 | -8.615850e-47 |
| Msa0908320 | Msa0908610 | 0.836376 | 9.702745e-57 | -8.615850e-47 |
| Msa0908370 | Msa0908610 | 0.889845 | 1.680959e-73 | -8.615850e-47 |
| Msa0908380 | Msa0908610 | 0.837497 | 5.020296e-57 | -8.615850e-47 |
| Msa0908430 | Msa0908610 | 0.857899 | 1.191490e-62 | -8.615850e-47 |
| Msa0908440 | Msa0908610 | 0.854685 | 1.043749e-61 | -8.615850e-47 |
| Msa0908450 | Msa0908610 | 0.962423 | 7.357813e-121 | -8.615850e-47 |
| Msa0908480 | Msa0908610 | 0.854698 | 1.034791e-61 | -8.615850e-47 |
| Msa0908530 | Msa0908610 | 0.907918 | 3.012225e-81 | -8.615850e-47 |
| Msa0908540 | Msa0908610 | 0.831821 | 1.343235e-55 | -8.615850e-47 |
| Msa0908590 | Msa0908610 | 0.832851 | 7.467548e-56 | -8.615850e-47 |
| Msa0908600 | Msa0908610 | 0.814726 | 1.330518e-51 | -8.615850e-47 |
| Msa0908610 | Msa0908650 | 0.832040 | 1.185828e-55 | -8.615850e-47 |
| Msa0908610 | Msa0908660 | 0.822561 | 2.218150e-53 | -8.615850e-47 |
| Msa0908610 | Msa0908670 | 0.960925 | 4.126791e-119 | -8.615850e-47 |
| Msa0908610 | Msa0908720 | 0.893003 | 9.416983e-75 | -8.615850e-47 |
| Msa0908610 | Msa0908730 | 0.803571 | 3.272090e-49 | -8.615850e-47 |
| Msa0908610 | Msa0911190 | 0.906010 | 2.341206e-80 | -8.615850e-47 |
| Msa0908610 | Msa0911200 | 0.822750 | 2.004204e-53 | -8.615850e-47 |
| Msa0908610 | Msa0911230 | 0.882157 | 1.318039e-70 | -8.615850e-47 |
| Msa0908610 | Msa0924830 | 0.822434 | 2.374288e-53 | -8.615850e-47 |
| Msa0908610 | Msa0924880 | 0.831755 | 1.394698e-55 | -8.615850e-47 |
| Msa0908610 | Msa0924920 | 0.879595 | 1.095864e-69 | -8.615850e-47 |
| Msa0908610 | Msa0924930 | 0.818099 | 2.339327e-52 | -8.615850e-47 |
| Msa0908610 | Msa0924940 | 0.837697 | 4.461754e-57 | -8.615850e-47 |
| Msa0908610 | Msa0925100 | 0.897679 | 1.112906e-76 | -8.615850e-47 |
| Msa0908610 | Msa0925110 | 0.855692 | 5.318152e-62 | -8.615850e-47 |
| Msa0908610 | Msa0931070 | 0.818966 | 1.487089e-52 | -8.615850e-47 |
| Msa0908610 | Msa0931110 | 0.805239 | 1.469224e-49 | -8.615850e-47 |
| Msa0908610 | Msa0931130 | 0.830598 | 2.684242e-55 | -8.615850e-47 |
| Msa0908610 | Msa0931160 | 0.805860 | 1.088495e-49 | -8.615850e-47 |
| Msa0908610 | Msa0931230 | 0.825808 | 3.831023e-54 | -8.615850e-47 |
| Msa0908610 | Msa0931260 | 0.841287 | 5.207159e-58 | -8.615850e-47 |
| Msa0908610 | Msa0983630 | 0.866475 | 2.775127e-65 | -8.615850e-47 |
| Msa0908610 | Msa0983640 | 0.825025 | 5.868848e-54 | -8.615850e-47 |
| Msa0908610 | Msa1022050 | 0.886979 | 2.132978e-72 | -8.615850e-47 |
| Msa0908610 | Msa1022060 | 0.825640 | 4.198555e-54 | -8.615850e-47 |
| Msa0908610 | Msa1064410 | 0.844745 | 6.250085e-59 | -8.615850e-47 |
| Msa0908610 | Msa1086090 | 0.834583 | 2.755477e-56 | -8.615850e-47 |
| Msa0908610 | Msa1086140 | 0.824405 | 8.215292e-54 | -8.615850e-47 |
| Msa0908610 | Msa1086190 | 0.805923 | 1.056110e-49 | -8.615850e-47 |
| Msa0908610 | Msa1086200 | 0.851597 | 8.002662e-61 | -8.615850e-47 |
| Msa0908610 | Msa1086270 | 0.824620 | 7.312144e-54 | -8.615850e-47 |
| Msa0908610 | Msa1086300 | 0.810242 | 1.270279e-50 | -8.615850e-47 |
| Msa0908610 | Msa1086320 | 0.810978 | 8.808102e-51 | -8.615850e-47 |
| Msa0908610 | Msa1086470 | 0.800427 | 1.448707e-48 | -8.615850e-47 |
| Msa0908610 | Msa1086490 | 0.806719 | 7.176116e-50 | -8.615850e-47 |
| Msa0908610 | Msa1086550 | 0.806367 | 8.515244e-50 | -8.615850e-47 |
| Msa0908610 | Msa1086600 | 0.846332 | 2.322028e-59 | -8.615850e-47 |
| Msa0908610 | Msa1086670 | 0.825590 | 4.314128e-54 | -8.615850e-47 |
| Msa0908610 | Msa1086720 | 0.841009 | 6.161698e-58 | -8.615850e-47 |
| Msa0908610 | Msa1086730 | 0.844367 | 7.901330e-59 | -8.615850e-47 |
| Msa0908610 | Msa1086740 | 0.937108 | 5.911083e-98 | -8.615850e-47 |
| Msa0908610 | Msa1086790 | 0.898942 | 3.233132e-77 | -8.615850e-47 |
| Msa0908610 | Msa1086800 | 0.838557 | 2.679418e-57 | -8.615850e-47 |
| Msa0908610 | Msa1086860 | 0.812805 | 3.524014e-51 | -8.615850e-47 |
| Msa0908610 | Msa1086890 | 0.811134 | 8.148200e-51 | -8.615850e-47 |
| Msa0908610 | Msa1086900 | 0.846903 | 1.621495e-59 | -8.615850e-47 |
| Msa0908610 | Msa1086960 | 0.915012 | 9.754017e-85 | -8.615850e-47 |
| Msa0908610 | Msa1086970 | 0.825117 | 5.582773e-54 | -8.615850e-47 |
| Msa0908610 | Msa1087030 | 0.835818 | 1.344757e-56 | -8.615850e-47 |
| Msa0908610 | Msa1087040 | 0.825836 | 3.771391e-54 | -8.615850e-47 |
| Msa0908610 | Msa1087050 | 0.922044 | 1.638409e-88 | -8.615850e-47 |
| Msa0908610 | Msa1087110 | 0.922700 | 6.992367e-89 | -8.615850e-47 |
| Msa0908610 | Msa1087120 | 0.820824 | 5.592645e-53 | -8.615850e-47 |
| Msa0908610 | Msa1143120 | 0.837246 | 5.821284e-57 | -8.615850e-47 |
| Msa0908610 | Msa1143170 | 0.836574 | 8.639971e-57 | -8.615850e-47 |
| Msa0908610 | Msa1305090 | 0.811495 | 6.803680e-51 | -8.615850e-47 |
| Msa0908610 | Msa1354420 | 0.889448 | 2.400216e-73 | -8.615850e-47 |
| Msa0908610 | Msa1354430 | 0.831943 | 1.252992e-55 | -8.615850e-47 |
| Msa0908610 | Msa1354480 | 0.823918 | 1.069233e-53 | -8.615850e-47 |
| Msa0908610 | Msa1354490 | 0.824035 | 1.003533e-53 | -8.615850e-47 |
| Msa0908610 | Msa1354500 | 0.947089 | 1.323323e-105 | -8.615850e-47 |
| Msa0908610 | Msa1354550 | 0.890611 | 8.428400e-74 | -8.615850e-47 |
| Msa0908610 | Msa1354560 | 0.835188 | 1.940142e-56 | -8.615850e-47 |
| Msa0908610 | Msa1354610 | 0.856863 | 2.412016e-62 | -8.615850e-47 |
| Msa0908610 | Msa1354620 | 0.828965 | 6.704373e-55 | -8.615850e-47 |
| Msa0908610 | Msa1354630 | 0.946654 | 3.055906e-105 | -8.615850e-47 |
| Msa0908610 | Msa1354680 | 0.908617 | 1.406018e-81 | -8.615850e-47 |
| Msa0908610 | Msa1354690 | 0.830008 | 3.740790e-55 | -8.615850e-47 |
| Msa0908610 | Msa1354700 | 0.817299 | 3.543372e-52 | -8.615850e-47 |
| Msa0908610 | Msa1354740 | 0.837042 | 6.562451e-57 | -8.615850e-47 |
| Msa0908610 | Msa1354750 | 0.845206 | 4.693041e-59 | -8.615850e-47 |
| Msa0908610 | Msa1354760 | 0.951476 | 1.885139e-109 | -8.615850e-47 |
| Msa0908610 | Msa1354810 | 0.902437 | 9.701637e-79 | -8.615850e-47 |
| Msa0908610 | Msa1354820 | 0.827731 | 1.330831e-54 | -8.615850e-47 |
| Msa0908610 | Msa1354910 | 0.803915 | 2.775660e-49 | -8.615850e-47 |
| Msa0908610 | Msa1354920 | 0.846643 | 1.909692e-59 | -8.615850e-47 |
| Msa0908610 | Msa1354980 | 0.895923 | 6.036582e-76 | -8.615850e-47 |
| Msa0908610 | Msa1354990 | 0.849208 | 3.747698e-60 | -8.615850e-47 |
| Msa0908610 | Msa1355080 | 0.822051 | 2.912244e-53 | -8.615850e-47 |
| Msa0908610 | Msa1355090 | 0.841491 | 4.601121e-58 | -8.615850e-47 |
| Msa0908610 | Msa1365890 | 0.877493 | 6.011780e-69 | -8.615850e-47 |
| Msa0908610 | Msa1365900 | 0.806299 | 8.800845e-50 | -8.615850e-47 |
| Msa0908610 | Msa1365950 | 0.823660 | 1.228945e-53 | -8.615850e-47 |
| Msa0908610 | Msa1365970 | 0.915020 | 9.661038e-85 | -8.615850e-47 |
| Msa0908610 | Msa1366080 | 0.879981 | 7.991271e-70 | -8.615850e-47 |
| Msa0908610 | Msa1366090 | 0.817822 | 2.702164e-52 | -8.615850e-47 |
| Msa0908610 | Msa1368230 | 0.823881 | 1.090680e-53 | -8.615850e-47 |
| Msa0908610 | Msa1368240 | 0.919678 | 3.333315e-87 | -8.615850e-47 |
| Msa0908610 | Msa1380610 | 0.808201 | 3.479453e-50 | -8.615850e-47 |
| Msa0908610 | Msa1385410 | 0.848448 | 6.089607e-60 | -8.615850e-47 |
| Msa0908610 | Msa1391090 | 0.813919 | 2.005804e-51 | -8.615850e-47 |
| Msa0908610 | Msa1391100 | 0.815906 | 7.271909e-52 | -8.615850e-47 |
| Msa0908610 | Msa1391110 | 0.930132 | 2.553115e-93 | -8.615850e-47 |
| Msa0908610 | Msa1391160 | 0.841040 | 6.044882e-58 | -8.615850e-47 |
| Msa0908610 | Msa1391170 | 0.841715 | 4.015449e-58 | -8.615850e-47 |
| Msa0908610 | Msa1391220 | 0.819011 | 1.453072e-52 | -8.615850e-47 |
| Msa0908610 | Msa1391240 | 0.926034 | 8.154168e-91 | -8.615850e-47 |
| Msa0908610 | Msa1394030 | 0.833122 | 6.391744e-56 | -8.615850e-47 |
| Msa0908610 | Msa1394040 | 0.817573 | 3.074761e-52 | -8.615850e-47 |
| Msa0908610 | Msa1394150 | 0.806450 | 8.177342e-50 | -8.615850e-47 |
| Msa0908610 | Msa1394160 | 0.832424 | 9.530577e-56 | -8.615850e-47 |
| Msa0908610 | Msa1394210 | 0.824205 | 9.158833e-54 | -8.615850e-47 |
| Msa0908610 | Msa1394250 | 0.810759 | 9.824854e-51 | -8.615850e-47 |
| Msa0908610 | Msa1460120 | 0.828048 | 1.116401e-54 | -8.615850e-47 |
| Msa0908610 | Msa1460130 | 0.823202 | 1.572824e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908610 | MtrunA17_Chr7g0234981 | 84.706 | 85 | 13 | 0 | 70 | 154 | 6 | 90 | 1.45e-45 | 144 |
| Msa0908610 | MtrunA17_MTg0491661 | 64.103 | 78 | 28 | 0 | 75 | 152 | 41 | 118 | 5.07e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908610 | ATCG00905.1 | 96.341 | 82 | 3 | 0 | 73 | 154 | 1 | 82 | 2.34e-51 | 159 |
| Msa0908610 | ATCG01230.1 | 96.341 | 82 | 3 | 0 | 73 | 154 | 1 | 82 | 2.34e-51 | 159 |
| Msa0908610 | AT2G07675.1 | 57.303 | 89 | 38 | 0 | 64 | 152 | 30 | 118 | 6.93e-30 | 105 |
| Msa0908610 | ATMG00980.1 | 57.303 | 89 | 38 | 0 | 64 | 152 | 30 | 118 | 6.93e-30 | 105 |
Find 39 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | 6_2:+9755155 | None:intergenic |
| CCAACAAGGTCGTTCTAATA+TGG | 0.226445 | 6_2:-9755188 | Msa0908610:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | 6_2:+9755305 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | 6_2:-9756149 | Msa0908610:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | 6_2:+9755215 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | 6_2:+9755385 | None:intergenic |
| CCATATTAGAACGACCTTGT+TGG | 0.433030 | 6_2:+9755188 | None:intergenic |
| CAACAAGGTCGTTCTAATAT+GGG | 0.433378 | 6_2:-9755187 | Msa0908610:CDS |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | 6_2:+9755315 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | 6_2:-9755289 | Msa0908610:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | 6_2:-9756355 | Msa0908610:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | 6_2:+9756481 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | 6_2:-9755361 | Msa0908610:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | 6_2:+9756157 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | 6_2:-9755328 | Msa0908610:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | 6_2:+9756507 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | 6_2:+9755216 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | 6_2:-9755215 | Msa0908610:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | 6_2:+9756493 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | 6_2:-9756549 | Msa0908610:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | 6_2:-9756536 | Msa0908610:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | 6_2:+9755375 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | 6_2:-9755288 | Msa0908610:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | 6_2:-9755449 | Msa0908610:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | 6_2:+9755360 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | 6_2:-9755334 | Msa0908610:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | 6_2:-9755241 | Msa0908610:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | 6_2:+9756508 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | 6_2:-9756141 | Msa0908610:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | 6_2:-9755287 | Msa0908610:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | 6_2:-9755202 | Msa0908610:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | 6_2:+9755316 | None:intergenic |
| AACAAGGTCGTTCTAATATG+GGG | 0.615392 | 6_2:-9755186 | Msa0908610:CDS |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | 6_2:-9755223 | Msa0908610:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | 6_2:+9755345 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | 6_2:+9756167 | None:intergenic |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | 6_2:-9755265 | Msa0908610:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | 6_2:-9755286 | Msa0908610:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | 6_2:+9755247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | chr6_2:9755303-9755322 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | chr6_2:9755304-9755323 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | chr6_2:9755307-9755326 | Msa0908610:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | chr6_2:9755303-9755322 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | chr6_2:9755304-9755323 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | chr6_2:9755307-9755326 | Msa0908610:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_2:9755743-9755762 | Msa0908610:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_2:9755743-9755762 | Msa0908610:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_2:9755485-9755504 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_2:9756104-9756123 | Msa0908610:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | chr6_2:9756149-9756168 | Msa0908610:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_2:9755485-9755504 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_2:9756104-9756123 | Msa0908610:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | chr6_2:9756149-9756168 | Msa0908610:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | chr6_2:9755262-9755281 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | chr6_2:9755263-9755282 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | chr6_2:9755383-9755402 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | chr6_2:9755384-9755403 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | chr6_2:9755385-9755404 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_2:9755486-9755505 | Msa0908610:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_2:9755491-9755510 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_2:9755628-9755647 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_2:9755851-9755870 | Msa0908610:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_2:9755927-9755946 | Msa0908610:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_2:9755928-9755947 | Msa0908610:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr6_2:9755995-9756014 | Msa0908610:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_2:9756005-9756024 | Msa0908610:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr6_2:9756068-9756087 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | chr6_2:9756150-9756169 | Msa0908610:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr6_2:9756204-9756223 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr6_2:9756404-9756423 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | chr6_2:9755262-9755281 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | chr6_2:9755263-9755282 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | chr6_2:9755383-9755402 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | chr6_2:9755384-9755403 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | chr6_2:9755385-9755404 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_2:9755486-9755505 | Msa0908610:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_2:9755491-9755510 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_2:9755628-9755647 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_2:9755851-9755870 | Msa0908610:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_2:9755927-9755946 | Msa0908610:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_2:9755928-9755947 | Msa0908610:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr6_2:9755995-9756014 | Msa0908610:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_2:9756005-9756024 | Msa0908610:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr6_2:9756068-9756087 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | chr6_2:9756150-9756169 | Msa0908610:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr6_2:9756204-9756223 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr6_2:9756404-9756423 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | chr6_2:9755257-9755276 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | chr6_2:9755297-9755316 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | chr6_2:9755351-9755370 | Msa0908610:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | chr6_2:9755428-9755447 | Msa0908610:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr6_2:9755984-9756003 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr6_2:9755985-9756004 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr6_2:9755983-9756002 | Msa0908610:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr6_2:9756000-9756019 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr6_2:9755998-9756017 | Msa0908610:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_2:9756004-9756023 | Msa0908610:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr6_2:9756394-9756413 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr6_2:9756418-9756437 | Msa0908610:intron | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | chr6_2:9755257-9755276 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | chr6_2:9755297-9755316 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | chr6_2:9755351-9755370 | Msa0908610:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | chr6_2:9755428-9755447 | Msa0908610:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr6_2:9755984-9756003 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr6_2:9755985-9756004 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr6_2:9755983-9756002 | Msa0908610:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr6_2:9756000-9756019 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr6_2:9755998-9756017 | Msa0908610:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_2:9756004-9756023 | Msa0908610:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr6_2:9756394-9756413 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr6_2:9756418-9756437 | Msa0908610:intron | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | chr6_2:9755296-9755315 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | chr6_2:9755415-9755434 | Msa0908610:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | chr6_2:9755421-9755440 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_2:9755519-9755538 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_2:9755782-9755801 | Msa0908610:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr6_2:9755810-9755829 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr6_2:9755982-9756001 | Msa0908610:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr6_2:9756206-9756225 | Msa0908610:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_2:9756234-9756253 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_2:9756236-9756255 | Msa0908610:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_2:9756304-9756323 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_2:9756314-9756333 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_2:9756315-9756334 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr6_2:9756372-9756391 | Msa0908610:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr6_2:9756393-9756412 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr6_2:9756417-9756436 | Msa0908610:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr6_2:9756419-9756438 | Msa0908610:intron | 35.0% |
| CAACAAGGTCGTTCTAATAT+GGG | - | chr6_2:9756519-9756538 | Msa0908610:CDS | 35.0% | |
| AACAAGGTCGTTCTAATATG+GGG | - | chr6_2:9756520-9756539 | Msa0908610:CDS | 35.0% | |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | chr6_2:9755296-9755315 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | chr6_2:9755415-9755434 | Msa0908610:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | chr6_2:9755421-9755440 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_2:9755519-9755538 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_2:9755782-9755801 | Msa0908610:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr6_2:9755810-9755829 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr6_2:9755982-9756001 | Msa0908610:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr6_2:9756206-9756225 | Msa0908610:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_2:9756234-9756253 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_2:9756236-9756255 | Msa0908610:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_2:9756304-9756323 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_2:9756314-9756333 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_2:9756315-9756334 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr6_2:9756372-9756391 | Msa0908610:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr6_2:9756393-9756412 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr6_2:9756417-9756436 | Msa0908610:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr6_2:9756419-9756438 | Msa0908610:intron | 35.0% |
| CAACAAGGTCGTTCTAATAT+GGG | - | chr6_2:9756519-9756538 | Msa0908610:CDS | 35.0% | |
| AACAAGGTCGTTCTAATATG+GGG | - | chr6_2:9756520-9756539 | Msa0908610:CDS | 35.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | chr6_2:9755170-9755189 | Msa0908610:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | chr6_2:9755201-9755220 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | chr6_2:9755216-9755235 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | chr6_2:9755221-9755240 | Msa0908610:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | chr6_2:9755228-9755247 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | chr6_2:9755295-9755314 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | chr6_2:9755414-9755433 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_2:9755468-9755487 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_2:9755472-9755491 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_2:9755593-9755612 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_2:9755592-9755611 | Msa0908610:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_2:9755940-9755959 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_2:9755961-9755980 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | chr6_2:9756154-9756173 | Msa0908610:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_2:9756313-9756332 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_2:9756324-9756343 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_2:9756334-9756353 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr6_2:9756364-9756383 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr6_2:9756378-9756397 | Msa0908610:CDS | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr6_2:9756420-9756439 | Msa0908610:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr6_2:9756462-9756481 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_2:9756465-9756484 | Msa0908610:intron | 40.0% | |
| CCATATTAGAACGACCTTGT+TGG | + | chr6_2:9756521-9756540 | None:intergenic | 40.0% | |
| CCAACAAGGTCGTTCTAATA+TGG | - | chr6_2:9756518-9756537 | Msa0908610:CDS | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | chr6_2:9755170-9755189 | Msa0908610:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | chr6_2:9755201-9755220 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | chr6_2:9755216-9755235 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | chr6_2:9755221-9755240 | Msa0908610:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | chr6_2:9755228-9755247 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | chr6_2:9755295-9755314 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | chr6_2:9755414-9755433 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_2:9755468-9755487 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_2:9755472-9755491 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_2:9755593-9755612 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_2:9755592-9755611 | Msa0908610:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_2:9755940-9755959 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_2:9755961-9755980 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | chr6_2:9756154-9756173 | Msa0908610:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_2:9756313-9756332 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_2:9756324-9756343 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_2:9756334-9756353 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr6_2:9756364-9756383 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr6_2:9756378-9756397 | Msa0908610:CDS | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr6_2:9756420-9756439 | Msa0908610:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr6_2:9756462-9756481 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_2:9756465-9756484 | Msa0908610:intron | 40.0% | |
| CCATATTAGAACGACCTTGT+TGG | + | chr6_2:9756521-9756540 | None:intergenic | 40.0% | |
| CCAACAAGGTCGTTCTAATA+TGG | - | chr6_2:9756518-9756537 | Msa0908610:CDS | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | chr6_2:9755202-9755221 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | chr6_2:9755294-9755313 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_2:9755506-9755525 | Msa0908610:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_2:9755510-9755529 | Msa0908610:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_2:9755516-9755535 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr6_2:9755564-9755583 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_2:9755565-9755584 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_2:9755566-9755585 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_2:9755565-9755584 | Msa0908610:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | chr6_2:9755911-9755930 | Msa0908610:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr6_2:9756015-9756034 | Msa0908610:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_2:9756159-9756178 | Msa0908610:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_2:9756176-9756195 | Msa0908610:CDS | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr6_2:9756249-9756268 | Msa0908610:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_2:9756424-9756443 | Msa0908610:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_2:9756425-9756444 | Msa0908610:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_2:9756441-9756460 | Msa0908610:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr6_2:9756493-9756512 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | chr6_2:9755202-9755221 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | chr6_2:9755294-9755313 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_2:9755506-9755525 | Msa0908610:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_2:9755510-9755529 | Msa0908610:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_2:9755516-9755535 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr6_2:9755564-9755583 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_2:9755565-9755584 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_2:9755566-9755585 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_2:9755565-9755584 | Msa0908610:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | chr6_2:9755911-9755930 | Msa0908610:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr6_2:9756015-9756034 | Msa0908610:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_2:9756159-9756178 | Msa0908610:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_2:9756176-9756195 | Msa0908610:CDS | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr6_2:9756249-9756268 | Msa0908610:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_2:9756424-9756443 | Msa0908610:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_2:9756425-9756444 | Msa0908610:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_2:9756441-9756460 | Msa0908610:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr6_2:9756493-9756512 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | chr6_2:9755293-9755312 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_2:9755943-9755962 | Msa0908610:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr6_2:9756218-9756237 | Msa0908610:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr6_2:9756257-9756276 | Msa0908610:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr6_2:9756349-9756368 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_2:9756431-9756450 | Msa0908610:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr6_2:9756494-9756513 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr6_2:9756491-9756510 | Msa0908610:intron | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_2:9756504-9756523 | Msa0908610:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | chr6_2:9755293-9755312 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_2:9755943-9755962 | Msa0908610:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr6_2:9756218-9756237 | Msa0908610:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr6_2:9756257-9756276 | Msa0908610:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr6_2:9756349-9756368 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_2:9756431-9756450 | Msa0908610:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr6_2:9756494-9756513 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr6_2:9756491-9756510 | Msa0908610:intron | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_2:9756504-9756523 | Msa0908610:CDS | 50.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | chr6_2:9755291-9755310 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | chr6_2:9755292-9755311 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | chr6_2:9755893-9755912 | Msa0908610:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr6_2:9755894-9755913 | Msa0908610:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | chr6_2:9755902-9755921 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr6_2:9756345-9756364 | Msa0908610:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr6_2:9756483-9756502 | Msa0908610:intron | 55.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | chr6_2:9755291-9755310 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | chr6_2:9755292-9755311 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | chr6_2:9755893-9755912 | Msa0908610:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr6_2:9755894-9755913 | Msa0908610:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | chr6_2:9755902-9755921 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr6_2:9756345-9756364 | Msa0908610:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr6_2:9756483-9756502 | Msa0908610:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr6_2:9755542-9755561 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr6_2:9755559-9755578 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr6_2:9755557-9755576 | Msa0908610:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | chr6_2:9755898-9755917 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | chr6_2:9755895-9755914 | Msa0908610:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | chr6_2:9755899-9755918 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr6_2:9755542-9755561 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr6_2:9755559-9755578 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr6_2:9755557-9755576 | Msa0908610:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | chr6_2:9755898-9755917 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | chr6_2:9755895-9755914 | Msa0908610:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | chr6_2:9755899-9755918 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr6_2:9755552-9755571 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr6_2:9755552-9755571 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9755159 | 9756569 | 9755159 | ID=Msa0908610;Name=Msa0908610 |
| chr6_2 | mRNA | 9755159 | 9756569 | 9755159 | ID=Msa0908610-mRNA-1;Parent=Msa0908610;Name=Msa0908610-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|160 |
| chr6_2 | exon | 9756493 | 9756569 | 9756493 | ID=Msa0908610-mRNA-1:exon:2386;Parent=Msa0908610-mRNA-1 |
| chr6_2 | exon | 9756356 | 9756399 | 9756356 | ID=Msa0908610-mRNA-1:exon:2385;Parent=Msa0908610-mRNA-1 |
| chr6_2 | exon | 9756142 | 9756200 | 9756142 | ID=Msa0908610-mRNA-1:exon:2384;Parent=Msa0908610-mRNA-1 |
| chr6_2 | exon | 9755159 | 9755461 | 9755159 | ID=Msa0908610-mRNA-1:exon:2383;Parent=Msa0908610-mRNA-1 |
| chr6_2 | CDS | 9756493 | 9756569 | 9756493 | ID=Msa0908610-mRNA-1:cds;Parent=Msa0908610-mRNA-1 |
| chr6_2 | CDS | 9756356 | 9756399 | 9756356 | ID=Msa0908610-mRNA-1:cds;Parent=Msa0908610-mRNA-1 |
| chr6_2 | CDS | 9756142 | 9756200 | 9756142 | ID=Msa0908610-mRNA-1:cds;Parent=Msa0908610-mRNA-1 |
| chr6_2 | CDS | 9755159 | 9755461 | 9755159 | ID=Msa0908610-mRNA-1:cds;Parent=Msa0908610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
