AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983630 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0983630 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0983630 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0983630 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0983630 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0983630 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0983630 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa0983630 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa0983630 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa0983630 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983630 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa0983630 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa0983630 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa0983630 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa0983630 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa0983630 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 6_4:-26755569 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 6_4:+26757756 Msa0983630:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 6_4:+26756802 Msa0983630:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 6_4:+26757830 Msa0983630:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 6_4:+26756448 Msa0983630:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 6_4:-26756790 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 6_4:+26757857 Msa0983630:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 6_4:+26755632 Msa0983630:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 6_4:+26757896 Msa0983630:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 6_4:-26757382 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 6_4:+26756819 Msa0983630:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 6_4:-26757868 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 6_4:-26757682 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 6_4:-26757409 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 6_4:-26757675 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 6_4:-26755568 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 6_4:+26757726 Msa0983630:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 6_4:-26757886 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 6_4:-26756787 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 6_4:-26756828 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 6_4:-26756786 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 6_4:+26756785 Msa0983630:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 6_4:-26755608 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 6_4:-26755587 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 6_4:-26757765 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 6_4:-26755596 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 6_4:-26756440 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 6_4:-26757381 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 6_4:+26757382 Msa0983630:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 6_4:+26757628 Msa0983630:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 6_4:+26755536 Msa0983630:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 6_4:-26755616 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 6_4:+26756784 Msa0983630:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 6_4:+26757876 Msa0983630:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 6_4:+26757560 Msa0983630:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 6_4:+26757819 Msa0983630:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 6_4:+26757914 Msa0983630:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 6_4:-26757766 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 6_4:-26755624 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 6_4:-26758259 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 6_4:+26757309 Msa0983630:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 6_4:-26758428 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 6_4:+26758412 Msa0983630:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 6_4:+26757871 Msa0983630:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 6_4:+26755537 Msa0983630:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 6_4:+26757870 Msa0983630:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 6_4:+26757356 Msa0983630:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 6_4:+26756456 Msa0983630:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 6_4:+26757310 Msa0983630:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 6_4:+26757920 Msa0983630:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 6_4:+26757395 Msa0983630:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 6_4:-26755609 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 6_4:-26757837 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 6_4:-26755566 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 6_4:+26757374 Msa0983630:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 6_4:-26756430 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 6_4:+26756786 Msa0983630:CDS
AGGACCATATAATATTTATG+GGG 0.632114 6_4:-26755567 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 6_4:-26755593 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 6_4:-26756407 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 6_4:+26757332 Msa0983630:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 6_4:+26758395 Msa0983630:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 6_4:+26757582 Msa0983630:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 6_4:+26757311 Msa0983630:intron
GACCATATAATATTTATGGG+GGG 0.666516 6_4:-26755565 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 6_4:-26755607 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 6_4:-26757350 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 6_4:+26757686 Msa0983630:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 6_4:+26757768 Msa0983630:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 6_4:-26756404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - chr6_4:26755819-26755838 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + chr6_4:26755828-26755847 Msa0983630:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - chr6_4:26756194-26756213 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - chr6_4:26756195-26756214 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + chr6_4:26756198-26756217 Msa0983630:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + chr6_4:26755829-26755848 Msa0983630:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + chr6_4:26756634-26756653 Msa0983630:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - chr6_4:26757465-26757484 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - chr6_4:26757466-26757485 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - chr6_4:26757467-26757486 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + chr6_4:26758141-26758160 Msa0983630:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - chr6_4:26755571-26755590 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - chr6_4:26755572-26755591 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + chr6_4:26755881-26755900 Msa0983630:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - chr6_4:26756031-26756050 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + chr6_4:26756031-26756050 Msa0983630:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - chr6_4:26756376-26756395 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr6_4:26756995-26757014 Msa0983630:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + chr6_4:26757040-26757059 Msa0983630:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + chr6_4:26757463-26757482 Msa0983630:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + chr6_4:26758038-26758057 Msa0983630:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + chr6_4:26758132-26758151 Msa0983630:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + chr6_4:26758152-26758171 Msa0983630:intron 20.0%
! AGGACCATATAATATTTATG+GGG - chr6_4:26755570-26755589 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - chr6_4:26755760-26755779 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - chr6_4:26755761-26755780 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - chr6_4:26755762-26755781 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + chr6_4:26755871-26755890 Msa0983630:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + chr6_4:26755887-26755906 Msa0983630:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - chr6_4:26755936-26755955 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - chr6_4:26755982-26756001 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - chr6_4:26756030-26756049 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + chr6_4:26756048-26756067 Msa0983630:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - chr6_4:26756153-26756172 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - chr6_4:26756154-26756173 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - chr6_4:26756274-26756293 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - chr6_4:26756275-26756294 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - chr6_4:26756276-26756295 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + chr6_4:26756377-26756396 Msa0983630:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - chr6_4:26756382-26756401 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - chr6_4:26756519-26756538 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr6_4:26756742-26756761 Msa0983630:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr6_4:26756818-26756837 Msa0983630:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr6_4:26756819-26756838 Msa0983630:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr6_4:26756886-26756905 Msa0983630:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr6_4:26756896-26756915 Msa0983630:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr6_4:26756959-26756978 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + chr6_4:26757041-26757060 Msa0983630:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr6_4:26757095-26757114 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr6_4:26757295-26757314 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - chr6_4:26757446-26757465 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - chr6_4:26757552-26757571 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + chr6_4:26757560-26757579 Msa0983630:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - chr6_4:26757590-26757609 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - chr6_4:26758024-26758043 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - chr6_4:26758311-26758330 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + chr6_4:26758395-26758414 Msa0983630:CDS 25.0%
GACCATATAATATTTATGGG+GGG - chr6_4:26755568-26755587 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - chr6_4:26755569-26755588 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + chr6_4:26755652-26755671 Msa0983630:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + chr6_4:26755653-26755672 Msa0983630:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - chr6_4:26755931-26755950 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + chr6_4:26755931-26755950 Msa0983630:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - chr6_4:26755981-26756000 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - chr6_4:26755983-26756002 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - chr6_4:26756148-26756167 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - chr6_4:26756188-26756207 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + chr6_4:26756242-26756261 Msa0983630:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + chr6_4:26756319-26756338 Msa0983630:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr6_4:26756875-26756894 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr6_4:26756876-26756895 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr6_4:26756874-26756893 Msa0983630:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr6_4:26756891-26756910 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr6_4:26756889-26756908 Msa0983630:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr6_4:26756895-26756914 Msa0983630:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr6_4:26757285-26757304 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr6_4:26757309-26757328 Msa0983630:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr6_4:26757411-26757430 Msa0983630:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - chr6_4:26757538-26757557 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - chr6_4:26757547-26757566 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + chr6_4:26757582-26757601 Msa0983630:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + chr6_4:26757596-26757615 Msa0983630:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + chr6_4:26757628-26757647 Msa0983630:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - chr6_4:26757718-26757737 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + chr6_4:26757857-26757876 Msa0983630:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + chr6_4:26757996-26758015 Msa0983630:intron 30.0%
TATGGATCCATACATAACAT+AGG - chr6_4:26758006-26758025 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + chr6_4:26758012-26758031 Msa0983630:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + chr6_4:26758086-26758105 Msa0983630:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - chr6_4:26758262-26758281 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + chr6_4:26758261-26758280 Msa0983630:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + chr6_4:26758278-26758297 Msa0983630:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - chr6_4:26758300-26758319 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - chr6_4:26758352-26758371 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + chr6_4:26758352-26758371 Msa0983630:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + chr6_4:26755563-26755582 Msa0983630:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + chr6_4:26755632-26755651 Msa0983630:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + chr6_4:26755659-26755678 Msa0983630:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + chr6_4:26755660-26755679 Msa0983630:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + chr6_4:26755778-26755797 Msa0983630:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - chr6_4:26755855-26755874 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - chr6_4:26756187-26756206 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + chr6_4:26756306-26756325 Msa0983630:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - chr6_4:26756312-26756331 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - chr6_4:26756410-26756429 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr6_4:26756673-26756692 Msa0983630:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr6_4:26756701-26756720 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr6_4:26756873-26756892 Msa0983630:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr6_4:26757097-26757116 Msa0983630:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr6_4:26757125-26757144 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr6_4:26757127-26757146 Msa0983630:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr6_4:26757195-26757214 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr6_4:26757205-26757224 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr6_4:26757206-26757225 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr6_4:26757263-26757282 Msa0983630:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - chr6_4:26757284-26757303 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr6_4:26757308-26757327 Msa0983630:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr6_4:26757310-26757329 Msa0983630:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr6_4:26757412-26757431 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr6_4:26757410-26757429 Msa0983630:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr6_4:26757412-26757431 Msa0983630:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - chr6_4:26757685-26757704 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + chr6_4:26757685-26757704 Msa0983630:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - chr6_4:26757717-26757736 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - chr6_4:26757769-26757788 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + chr6_4:26757914-26757933 Msa0983630:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + chr6_4:26757961-26757980 Msa0983630:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + chr6_4:26758297-26758316 Msa0983630:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - chr6_4:26755754-26755773 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - chr6_4:26755790-26755809 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + chr6_4:26756061-26756080 Msa0983630:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - chr6_4:26756092-26756111 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - chr6_4:26756107-26756126 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + chr6_4:26756112-26756131 Msa0983630:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - chr6_4:26756119-26756138 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - chr6_4:26756186-26756205 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - chr6_4:26756305-26756324 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - chr6_4:26756359-26756378 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - chr6_4:26756363-26756382 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - chr6_4:26756484-26756503 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + chr6_4:26756483-26756502 Msa0983630:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr6_4:26756831-26756850 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr6_4:26756852-26756871 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + chr6_4:26757045-26757064 Msa0983630:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr6_4:26757204-26757223 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr6_4:26757215-26757234 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr6_4:26757225-26757244 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr6_4:26757255-26757274 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr6_4:26757269-26757288 Msa0983630:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr6_4:26757311-26757330 Msa0983630:intron 40.0%
ACAATGTGATATCTCACACC+AGG - chr6_4:26757353-26757372 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr6_4:26757356-26757375 Msa0983630:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + chr6_4:26757684-26757703 Msa0983630:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + chr6_4:26757686-26757705 Msa0983630:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + chr6_4:26757726-26757745 Msa0983630:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + chr6_4:26757756-26757775 Msa0983630:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - chr6_4:26757768-26757787 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + chr6_4:26757768-26757787 Msa0983630:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + chr6_4:26757798-26757817 Msa0983630:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - chr6_4:26757830-26757849 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + chr6_4:26757830-26757849 Msa0983630:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - chr6_4:26757840-26757859 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - chr6_4:26757871-26757890 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + chr6_4:26757871-26757890 Msa0983630:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - chr6_4:26757907-26757926 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - chr6_4:26757976-26757995 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + chr6_4:26758105-26758124 Msa0983630:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + chr6_4:26758106-26758125 Msa0983630:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + chr6_4:26755536-26755555 Msa0983630:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - chr6_4:26755590-26755609 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - chr6_4:26755610-26755629 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - chr6_4:26755611-26755630 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - chr6_4:26755619-26755638 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - chr6_4:26755627-26755646 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + chr6_4:26755920-26755939 Msa0983630:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - chr6_4:26756093-26756112 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - chr6_4:26756185-26756204 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + chr6_4:26756397-26756416 Msa0983630:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + chr6_4:26756401-26756420 Msa0983630:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - chr6_4:26756407-26756426 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - chr6_4:26756455-26756474 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - chr6_4:26756456-26756475 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - chr6_4:26756457-26756476 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + chr6_4:26756456-26756475 Msa0983630:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + chr6_4:26756802-26756821 Msa0983630:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr6_4:26756906-26756925 Msa0983630:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + chr6_4:26757050-26757069 Msa0983630:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr6_4:26757067-26757086 Msa0983630:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr6_4:26757140-26757159 Msa0983630:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr6_4:26757315-26757334 Msa0983630:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr6_4:26757316-26757335 Msa0983630:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr6_4:26757332-26757351 Msa0983630:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr6_4:26757384-26757403 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + chr6_4:26757490-26757509 Msa0983630:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - chr6_4:26757678-26757697 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + chr6_4:26757790-26757809 Msa0983630:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - chr6_4:26757805-26757824 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - chr6_4:26757829-26757848 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + chr6_4:26757870-26757889 Msa0983630:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + chr6_4:26757920-26757939 Msa0983630:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + chr6_4:26758107-26758126 Msa0983630:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - chr6_4:26758431-26758450 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + chr6_4:26755537-26755556 Msa0983630:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - chr6_4:26755558-26755577 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - chr6_4:26755596-26755615 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - chr6_4:26755599-26755618 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - chr6_4:26755612-26755631 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + chr6_4:26755699-26755718 Msa0983630:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - chr6_4:26755735-26755754 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - chr6_4:26756184-26756203 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr6_4:26756834-26756853 Msa0983630:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr6_4:26757109-26757128 Msa0983630:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr6_4:26757148-26757167 Msa0983630:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr6_4:26757240-26757259 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr6_4:26757322-26757341 Msa0983630:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr6_4:26757385-26757404 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr6_4:26757382-26757401 Msa0983630:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr6_4:26757395-26757414 Msa0983630:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - chr6_4:26757494-26757513 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - chr6_4:26757784-26757803 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - chr6_4:26757889-26757908 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + chr6_4:26757896-26757915 Msa0983630:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - chr6_4:26755711-26755730 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - chr6_4:26755714-26755733 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - chr6_4:26755749-26755768 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - chr6_4:26755750-26755769 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - chr6_4:26756182-26756201 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - chr6_4:26756183-26756202 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr6_4:26756784-26756803 Msa0983630:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr6_4:26756785-26756804 Msa0983630:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - chr6_4:26756793-26756812 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr6_4:26757236-26757255 Msa0983630:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr6_4:26757374-26757393 Msa0983630:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - chr6_4:26757495-26757514 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + chr6_4:26757495-26757514 Msa0983630:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + chr6_4:26757876-26757895 Msa0983630:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + chr6_4:26758412-26758431 Msa0983630:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - chr6_4:26755748-26755767 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - chr6_4:26756433-26756452 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - chr6_4:26756450-26756469 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + chr6_4:26756448-26756467 Msa0983630:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - chr6_4:26756789-26756808 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + chr6_4:26756786-26756805 Msa0983630:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - chr6_4:26756790-26756809 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - chr6_4:26756443-26756462 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + chr6_4:26757819-26757838 Msa0983630:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 26755522 26758452 26755522 ID=Msa0983630;Name=Msa0983630
chr6_4 mRNA 26755522 26758452 26755522 ID=Msa0983630-mRNA-1;Parent=Msa0983630;Name=Msa0983630-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
chr6_4 exon 26755522 26755674 26755522 ID=Msa0983630-mRNA-1:exon:7564;Parent=Msa0983630-mRNA-1
chr6_4 exon 26756397 26756486 26756397 ID=Msa0983630-mRNA-1:exon:7565;Parent=Msa0983630-mRNA-1
chr6_4 exon 26756747 26756840 26756747 ID=Msa0983630-mRNA-1:exon:7566;Parent=Msa0983630-mRNA-1
chr6_4 exon 26757324 26757416 26757324 ID=Msa0983630-mRNA-1:exon:7567;Parent=Msa0983630-mRNA-1
chr6_4 exon 26757571 26757807 26757571 ID=Msa0983630-mRNA-1:exon:7568;Parent=Msa0983630-mRNA-1
chr6_4 exon 26757820 26757966 26757820 ID=Msa0983630-mRNA-1:exon:7569;Parent=Msa0983630-mRNA-1
chr6_4 exon 26758259 26758452 26758259 ID=Msa0983630-mRNA-1:exon:7570;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26755522 26755674 26755522 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26756397 26756486 26756397 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26756747 26756840 26756747 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26757324 26757416 26757324 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26757571 26757807 26757571 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26757820 26757966 26757820 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
chr6_4 CDS 26758259 26758452 26758259 ID=Msa0983630-mRNA-1:cds;Parent=Msa0983630-mRNA-1
Gene Sequence

>Msa0983630

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa0983630

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI