Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354680 | AES69829.1 | 54.706 | 170 | 33 | 2 | 1 | 126 | 1 | 170 | 2.48e-47 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354680 | sp|A4GGC9|RR12_PHAVU | 93.333 | 45 | 3 | 0 | 84 | 128 | 79 | 123 | 2.05e-22 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354680 | G7J101 | 54.706 | 170 | 33 | 2 | 1 | 126 | 1 | 170 | 1.19e-47 | 173 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354680 | 0.803043 | 4.208737e-49 | -8.615850e-47 |
| Msa0095210 | Msa1354680 | 0.801631 | 8.218152e-49 | -8.615850e-47 |
| Msa1354420 | Msa1354680 | 0.920868 | 7.415617e-88 | -8.615850e-47 |
| Msa1354430 | Msa1354680 | 0.837771 | 4.269099e-57 | -8.615850e-47 |
| Msa1354480 | Msa1354680 | 0.835361 | 1.755225e-56 | -8.615850e-47 |
| Msa1354490 | Msa1354680 | 0.855766 | 5.062105e-62 | -8.615850e-47 |
| Msa1354500 | Msa1354680 | 0.941073 | 7.826903e-101 | -8.615850e-47 |
| Msa1354550 | Msa1354680 | 0.923189 | 3.685672e-89 | -8.615850e-47 |
| Msa1354560 | Msa1354680 | 0.840013 | 1.122746e-57 | -8.615850e-47 |
| Msa1354610 | Msa1354680 | 0.849832 | 2.509878e-60 | -8.615850e-47 |
| Msa1354620 | Msa1354680 | 0.849130 | 3.939284e-60 | -8.615850e-47 |
| Msa1354630 | Msa1354680 | 0.932015 | 1.603408e-94 | -8.615850e-47 |
| Msa1354680 | Msa1354690 | 0.867653 | 1.167834e-65 | -8.615850e-47 |
| Msa1354680 | Msa1354700 | 0.829491 | 4.996799e-55 | -8.615850e-47 |
| Msa1354680 | Msa1354740 | 0.849920 | 2.372454e-60 | -8.615850e-47 |
| Msa1354680 | Msa1354750 | 0.841629 | 4.230641e-58 | -8.615850e-47 |
| Msa1354680 | Msa1354760 | 0.934437 | 4.045127e-96 | -8.615850e-47 |
| Msa1354680 | Msa1354810 | 0.916203 | 2.361739e-85 | -8.615850e-47 |
| Msa1354680 | Msa1354820 | 0.834707 | 2.564573e-56 | -8.615850e-47 |
| Msa1354680 | Msa1354910 | 0.811463 | 6.913502e-51 | -8.615850e-47 |
| Msa1354680 | Msa1354920 | 0.853028 | 3.132140e-61 | -8.615850e-47 |
| Msa1354680 | Msa1354980 | 0.910635 | 1.502826e-82 | -8.615850e-47 |
| Msa1354680 | Msa1354990 | 0.847782 | 9.300106e-60 | -8.615850e-47 |
| Msa1354680 | Msa1355080 | 0.830303 | 3.168056e-55 | -8.615850e-47 |
| Msa1354680 | Msa1355090 | 0.835586 | 1.539392e-56 | -8.615850e-47 |
| Msa1354680 | Msa1365890 | 0.900600 | 6.228058e-78 | -8.615850e-47 |
| Msa1354680 | Msa1365900 | 0.817057 | 4.016395e-52 | -8.615850e-47 |
| Msa1354680 | Msa1365950 | 0.806522 | 7.896596e-50 | -8.615850e-47 |
| Msa1354680 | Msa1365960 | 0.835173 | 1.957780e-56 | -8.615850e-47 |
| Msa1354680 | Msa1365970 | 0.932068 | 1.481464e-94 | -8.615850e-47 |
| Msa1354680 | Msa1366080 | 0.891567 | 3.531439e-74 | -8.615850e-47 |
| Msa1354680 | Msa1366090 | 0.808942 | 2.416653e-50 | -8.615850e-47 |
| Msa1354680 | Msa1368230 | 0.857370 | 1.710044e-62 | -8.615850e-47 |
| Msa1354680 | Msa1368240 | 0.921231 | 4.664246e-88 | -8.615850e-47 |
| Msa1354680 | Msa1380610 | 0.832766 | 7.836073e-56 | -8.615850e-47 |
| Msa1354680 | Msa1385410 | 0.879385 | 1.301683e-69 | -8.615850e-47 |
| Msa1354680 | Msa1385420 | 0.819534 | 1.104197e-52 | -8.615850e-47 |
| Msa1354680 | Msa1391090 | 0.810016 | 1.421029e-50 | -8.615850e-47 |
| Msa1354680 | Msa1391100 | 0.848219 | 7.048219e-60 | -8.615850e-47 |
| Msa1354680 | Msa1391110 | 0.916071 | 2.765612e-85 | -8.615850e-47 |
| Msa1354680 | Msa1391160 | 0.867464 | 1.342925e-65 | -8.615850e-47 |
| Msa1354680 | Msa1391170 | 0.832081 | 1.158508e-55 | -8.615850e-47 |
| Msa1354680 | Msa1391220 | 0.821787 | 3.352668e-53 | -8.615850e-47 |
| Msa1354680 | Msa1391230 | 0.828705 | 7.747306e-55 | -8.615850e-47 |
| Msa1354680 | Msa1391240 | 0.918414 | 1.605399e-86 | -8.615850e-47 |
| Msa1354680 | Msa1394030 | 0.845369 | 4.239840e-59 | -8.615850e-47 |
| Msa1354680 | Msa1394040 | 0.830190 | 3.376065e-55 | -8.615850e-47 |
| Msa1354680 | Msa1394150 | 0.819171 | 1.336264e-52 | -8.615850e-47 |
| Msa1354680 | Msa1394160 | 0.838489 | 2.790488e-57 | -8.615850e-47 |
| Msa1354680 | Msa1394210 | 0.845288 | 4.460001e-59 | -8.615850e-47 |
| Msa1354680 | Msa1460120 | 0.848054 | 7.825051e-60 | -8.615850e-47 |
| Msa1354680 | Msa1460130 | 0.837417 | 5.263428e-57 | -8.615850e-47 |
| Msa0202640 | Msa1354680 | 0.845685 | 3.481320e-59 | -8.615850e-47 |
| Msa1305090 | Msa1354680 | 0.823787 | 1.147920e-53 | -8.615850e-47 |
| Msa0405420 | Msa1354680 | 0.850912 | 1.249414e-60 | -8.615850e-47 |
| Msa0405430 | Msa1354680 | 0.839002 | 2.056361e-57 | -8.615850e-47 |
| Msa0405440 | Msa1354680 | 0.904801 | 8.396621e-80 | -8.615850e-47 |
| Msa0405510 | Msa1354680 | 0.834441 | 2.991966e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354680 | 0.813365 | 2.655627e-51 | -8.615850e-47 |
| Msa0405530 | Msa1354680 | 0.920667 | 9.567856e-88 | -8.615850e-47 |
| Msa0983630 | Msa1354680 | 0.873747 | 1.156950e-67 | -8.615850e-47 |
| Msa0983640 | Msa1354680 | 0.806118 | 9.604982e-50 | -8.615850e-47 |
| Msa1022050 | Msa1354680 | 0.905749 | 3.088444e-80 | -8.615850e-47 |
| Msa1022060 | Msa1354680 | 0.825360 | 4.891560e-54 | -8.615850e-47 |
| Msa1064410 | Msa1354680 | 0.856135 | 3.946867e-62 | -8.615850e-47 |
| Msa1086050 | Msa1354680 | 0.806021 | 1.006858e-49 | -8.615850e-47 |
| Msa1086080 | Msa1354680 | 0.817863 | 2.645064e-52 | -8.615850e-47 |
| Msa1086090 | Msa1354680 | 0.850597 | 1.532516e-60 | -8.615850e-47 |
| Msa1086140 | Msa1354680 | 0.843427 | 1.410675e-58 | -8.615850e-47 |
| Msa1086190 | Msa1354680 | 0.835539 | 1.582112e-56 | -8.615850e-47 |
| Msa1086200 | Msa1354680 | 0.856876 | 2.391775e-62 | -8.615850e-47 |
| Msa1086270 | Msa1354680 | 0.833044 | 6.685994e-56 | -8.615850e-47 |
| Msa1086300 | Msa1354680 | 0.802449 | 5.581786e-49 | -8.615850e-47 |
| Msa1086510 | Msa1354680 | 0.810873 | 9.280224e-51 | -8.615850e-47 |
| Msa1086550 | Msa1354680 | 0.810890 | 9.204130e-51 | -8.615850e-47 |
| Msa1086590 | Msa1354680 | 0.813836 | 2.091889e-51 | -8.615850e-47 |
| Msa1086600 | Msa1354680 | 0.844088 | 9.387905e-59 | -8.615850e-47 |
| Msa1086720 | Msa1354680 | 0.844563 | 6.998558e-59 | -8.615850e-47 |
| Msa1086730 | Msa1354680 | 0.853793 | 1.888636e-61 | -8.615850e-47 |
| Msa1086740 | Msa1354680 | 0.937374 | 3.841065e-98 | -8.615850e-47 |
| Msa1086790 | Msa1354680 | 0.904304 | 1.412031e-79 | -8.615850e-47 |
| Msa1086800 | Msa1354680 | 0.840201 | 1.002837e-57 | -8.615850e-47 |
| Msa1086890 | Msa1354680 | 0.823293 | 1.497487e-53 | -8.615850e-47 |
| Msa1086900 | Msa1354680 | 0.840415 | 8.814823e-58 | -8.615850e-47 |
| Msa1086960 | Msa1354680 | 0.908274 | 2.043859e-81 | -8.615850e-47 |
| Msa1086970 | Msa1354680 | 0.823078 | 1.680869e-53 | -8.615850e-47 |
| Msa1087030 | Msa1354680 | 0.832458 | 9.347462e-56 | -8.615850e-47 |
| Msa1087040 | Msa1354680 | 0.842370 | 2.695077e-58 | -8.615850e-47 |
| Msa1087050 | Msa1354680 | 0.921705 | 2.539156e-88 | -8.615850e-47 |
| Msa1087110 | Msa1354680 | 0.916811 | 1.136704e-85 | -8.615850e-47 |
| Msa1087120 | Msa1354680 | 0.831056 | 2.071622e-55 | -8.615850e-47 |
| Msa1091700 | Msa1354680 | 0.806087 | 9.750675e-50 | -8.615850e-47 |
| Msa0263770 | Msa1354680 | 0.867326 | 1.486274e-65 | -8.615850e-47 |
| Msa0268190 | Msa1354680 | 0.803790 | 2.945902e-49 | -8.615850e-47 |
| Msa0268210 | Msa1354680 | 0.819804 | 9.579418e-53 | -8.615850e-47 |
| Msa0268250 | Msa1354680 | 0.825060 | 5.760266e-54 | -8.615850e-47 |
| Msa0268260 | Msa1354680 | 0.853428 | 2.405525e-61 | -8.615850e-47 |
| Msa0268270 | Msa1354680 | 0.925848 | 1.051248e-90 | -8.615850e-47 |
| Msa0268300 | Msa1354680 | 0.886214 | 4.154027e-72 | -8.615850e-47 |
| Msa0268310 | Msa1354680 | 0.844755 | 6.210886e-59 | -8.615850e-47 |
| Msa0268410 | Msa1354680 | 0.801941 | 7.099547e-49 | -8.615850e-47 |
| Msa0268430 | Msa1354680 | 0.811043 | 8.526184e-51 | -8.615850e-47 |
| Msa0268450 | Msa1354680 | 0.809091 | 2.245512e-50 | -8.615850e-47 |
| Msa0268560 | Msa1354680 | 0.822311 | 2.535066e-53 | -8.615850e-47 |
| Msa0268570 | Msa1354680 | 0.843646 | 1.232894e-58 | -8.615850e-47 |
| Msa0268580 | Msa1354680 | 0.805745 | 1.150584e-49 | -8.615850e-47 |
| Msa0268630 | Msa1354680 | 0.822190 | 2.704199e-53 | -8.615850e-47 |
| Msa0268670 | Msa1354680 | 0.806546 | 7.805555e-50 | -8.615850e-47 |
| Msa0268740 | Msa1354680 | 0.819500 | 1.123923e-52 | -8.615850e-47 |
| Msa0268750 | Msa1354680 | 0.858489 | 7.956801e-63 | -8.615850e-47 |
| Msa0268830 | Msa1354680 | 0.856099 | 4.043461e-62 | -8.615850e-47 |
| Msa0268840 | Msa1354680 | 0.802534 | 5.359522e-49 | -8.615850e-47 |
| Msa0268860 | Msa1354680 | 0.815368 | 9.580577e-52 | -8.615850e-47 |
| Msa0268880 | Msa1354680 | 0.808360 | 3.217293e-50 | -8.615850e-47 |
| Msa0268950 | Msa1354680 | 0.823995 | 1.025477e-53 | -8.615850e-47 |
| Msa0268960 | Msa1354680 | 0.854560 | 1.135059e-61 | -8.615850e-47 |
| Msa0269040 | Msa1354680 | 0.836617 | 8.426993e-57 | -8.615850e-47 |
| Msa0269070 | Msa1354680 | 0.822228 | 2.650025e-53 | -8.615850e-47 |
| Msa0269140 | Msa1354680 | 0.858491 | 7.943635e-63 | -8.615850e-47 |
| Msa0269150 | Msa1354680 | 0.937216 | 4.964108e-98 | -8.615850e-47 |
| Msa0344190 | Msa1354680 | 0.811581 | 6.518387e-51 | -8.615850e-47 |
| Msa0344310 | Msa1354680 | 0.831179 | 1.933375e-55 | -8.615850e-47 |
| Msa1143120 | Msa1354680 | 0.844134 | 9.123972e-59 | -8.615850e-47 |
| Msa1143170 | Msa1354680 | 0.844899 | 5.681700e-59 | -8.615850e-47 |
| Msa0484040 | Msa1354680 | 0.827180 | 1.804152e-54 | -8.615850e-47 |
| Msa0582510 | Msa1354680 | 0.837080 | 6.418084e-57 | -8.615850e-47 |
| Msa0582540 | Msa1354680 | 0.818619 | 1.783601e-52 | -8.615850e-47 |
| Msa0582640 | Msa1354680 | 0.809099 | 2.236986e-50 | -8.615850e-47 |
| Msa0582650 | Msa1354680 | 0.835800 | 1.358996e-56 | -8.615850e-47 |
| Msa0582690 | Msa1354680 | 0.850962 | 1.209150e-60 | -8.615850e-47 |
| Msa0582730 | Msa1354680 | 0.805945 | 1.044860e-49 | -8.615850e-47 |
| Msa0582760 | Msa1354680 | 0.813803 | 2.127318e-51 | -8.615850e-47 |
| Msa0582770 | Msa1354680 | 0.841973 | 3.434271e-58 | -8.615850e-47 |
| Msa0582810 | Msa1354680 | 0.857904 | 1.187672e-62 | -8.615850e-47 |
| Msa0582840 | Msa1354680 | 0.804080 | 2.564383e-49 | -8.615850e-47 |
| Msa0582910 | Msa1354680 | 0.816504 | 5.345557e-52 | -8.615850e-47 |
| Msa0582920 | Msa1354680 | 0.845103 | 5.004595e-59 | -8.615850e-47 |
| Msa0591310 | Msa1354680 | 0.850656 | 1.474543e-60 | -8.615850e-47 |
| Msa0591350 | Msa1354680 | 0.879439 | 1.245170e-69 | -8.615850e-47 |
| Msa0591360 | Msa1354680 | 0.834254 | 3.332920e-56 | -8.615850e-47 |
| Msa0591380 | Msa1354680 | 0.824786 | 6.681943e-54 | -8.615850e-47 |
| Msa0867680 | Msa1354680 | 0.856500 | 3.085408e-62 | -8.615850e-47 |
| Msa0867690 | Msa1354680 | 0.842891 | 1.960331e-58 | -8.615850e-47 |
| Msa0876520 | Msa1354680 | 0.849741 | 2.661326e-60 | -8.615850e-47 |
| Msa0908220 | Msa1354680 | 0.840900 | 6.578943e-58 | -8.615850e-47 |
| Msa0908230 | Msa1354680 | 0.865399 | 6.074610e-65 | -8.615850e-47 |
| Msa0908240 | Msa1354680 | 0.934449 | 3.970548e-96 | -8.615850e-47 |
| Msa0908310 | Msa1354680 | 0.901476 | 2.577066e-78 | -8.615850e-47 |
| Msa0908320 | Msa1354680 | 0.840839 | 6.828176e-58 | -8.615850e-47 |
| Msa0908370 | Msa1354680 | 0.917135 | 7.677524e-86 | -8.615850e-47 |
| Msa0908380 | Msa1354680 | 0.824747 | 6.825136e-54 | -8.615850e-47 |
| Msa0908430 | Msa1354680 | 0.841286 | 5.211742e-58 | -8.615850e-47 |
| Msa0908440 | Msa1354680 | 0.875002 | 4.340333e-68 | -8.615850e-47 |
| Msa0908450 | Msa1354680 | 0.928818 | 1.685134e-92 | -8.615850e-47 |
| Msa0908480 | Msa1354680 | 0.862916 | 3.609501e-64 | -8.615850e-47 |
| Msa0908530 | Msa1354680 | 0.904527 | 1.117834e-79 | -8.615850e-47 |
| Msa0908540 | Msa1354680 | 0.822184 | 2.713565e-53 | -8.615850e-47 |
| Msa0908590 | Msa1354680 | 0.835158 | 1.974825e-56 | -8.615850e-47 |
| Msa0908600 | Msa1354680 | 0.837767 | 4.278934e-57 | -8.615850e-47 |
| Msa0908610 | Msa1354680 | 0.908617 | 1.406018e-81 | -8.615850e-47 |
| Msa0908650 | Msa1354680 | 0.827757 | 1.311334e-54 | -8.615850e-47 |
| Msa0908660 | Msa1354680 | 0.837859 | 4.053951e-57 | -8.615850e-47 |
| Msa0908670 | Msa1354680 | 0.929772 | 4.299151e-93 | -8.615850e-47 |
| Msa0908720 | Msa1354680 | 0.897975 | 8.341775e-77 | -8.615850e-47 |
| Msa0908730 | Msa1354680 | 0.815557 | 8.697885e-52 | -8.615850e-47 |
| Msa0911190 | Msa1354680 | 0.924744 | 4.675700e-90 | -8.615850e-47 |
| Msa0911200 | Msa1354680 | 0.828327 | 9.559432e-55 | -8.615850e-47 |
| Msa0911230 | Msa1354680 | 0.905972 | 2.438992e-80 | -8.615850e-47 |
| Msa0924830 | Msa1354680 | 0.835133 | 2.003648e-56 | -8.615850e-47 |
| Msa0924880 | Msa1354680 | 0.851053 | 1.140298e-60 | -8.615850e-47 |
| Msa0924920 | Msa1354680 | 0.868710 | 5.334044e-66 | -8.615850e-47 |
| Msa0924930 | Msa1354680 | 0.863189 | 2.973780e-64 | -8.615850e-47 |
| Msa0924940 | Msa1354680 | 0.842023 | 3.331263e-58 | -8.615850e-47 |
| Msa0925100 | Msa1354680 | 0.896971 | 2.208781e-76 | -8.615850e-47 |
| Msa0925110 | Msa1354680 | 0.854437 | 1.231960e-61 | -8.615850e-47 |
| Msa0931070 | Msa1354680 | 0.841322 | 5.098124e-58 | -8.615850e-47 |
| Msa0931110 | Msa1354680 | 0.804793 | 1.821708e-49 | -8.615850e-47 |
| Msa0931130 | Msa1354680 | 0.853847 | 1.823408e-61 | -8.615850e-47 |
| Msa0931160 | Msa1354680 | 0.805463 | 1.318667e-49 | -8.615850e-47 |
| Msa0931220 | Msa1354680 | 0.820578 | 6.370030e-53 | -8.615850e-47 |
| Msa0931230 | Msa1354680 | 0.830166 | 3.422579e-55 | -8.615850e-47 |
| Msa0931260 | Msa1354680 | 0.862013 | 6.842910e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354680 | MtrunA17_Chr7g0234981 | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.33e-21 | 81.3 |
| Msa1354680 | MtrunA17_CPg0492401 | 69.767 | 43 | 13 | 0 | 21 | 63 | 1 | 43 | 4.13e-15 | 64.7 |
| Msa1354680 | MtrunA17_MTg0491661 | 66.667 | 42 | 14 | 0 | 87 | 128 | 82 | 123 | 3.85e-14 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354680 | ATCG00905.1 | 91.111 | 45 | 4 | 0 | 84 | 128 | 41 | 85 | 6.90e-23 | 85.9 |
| Msa1354680 | ATCG01230.1 | 91.111 | 45 | 4 | 0 | 84 | 128 | 41 | 85 | 6.90e-23 | 85.9 |
| Msa1354680 | AT2G07675.1 | 61.905 | 42 | 16 | 0 | 87 | 128 | 82 | 123 | 5.01e-12 | 58.9 |
| Msa1354680 | ATMG00980.1 | 61.905 | 42 | 16 | 0 | 87 | 128 | 82 | 123 | 5.01e-12 | 58.9 |
Find 37 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0014543:-451744 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0014543:+451711 | Msa1354680:CDS |
| AGCGGGGATCTTTCACAAAA+AGG | 0.310040 | tig0014543:+451103 | Msa1354680:CDS |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0014543:+450749 | Msa1354680:CDS |
| AGATCCCCGCTTTCGTGCTT+TGG | 0.334118 | tig0014543:-451091 | None:intergenic |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0014543:-451683 | None:intergenic |
| AAAAGGATTCCTATTCTAAA+GGG | 0.399720 | tig0014543:+451120 | Msa1354680:CDS |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0014543:+451712 | Msa1354680:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0014543:-451710 | None:intergenic |
| TCCCCGCTTTCGTGCTTTGG+TGG | 0.445504 | tig0014543:-451088 | None:intergenic |
| GGTTATGCACCCTTTAGAAT+AGG | 0.446599 | tig0014543:-451129 | None:intergenic |
| CCCCGCTTTCGTGCTTTGGT+GGG | 0.449392 | tig0014543:-451087 | None:intergenic |
| ACCCACCAAAGCACGAAAGC+GGG | 0.461764 | tig0014543:+451086 | Msa1354680:CDS |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0014543:-450419 | None:intergenic |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0014543:-450741 | None:intergenic |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0014543:-450393 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0014543:-451682 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0014543:+451683 | Msa1354680:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0014543:-450407 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0014543:+450351 | None:intergenic |
| GACCCACCAAAGCACGAAAG+CGG | 0.528018 | tig0014543:+451085 | Msa1354680:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0014543:+450364 | Msa1354680:CDS |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0014543:+451610 | Msa1354680:intron |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0014543:+451657 | Msa1354680:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0014543:-450392 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0014543:+450757 | Msa1354680:CDS |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0014543:+451611 | Msa1354680:intron |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0014543:+451696 | Msa1354680:CDS |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0014543:+451675 | Msa1354680:CDS |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0014543:-450731 | None:intergenic |
| CCCACCAAAGCACGAAAGCG+GGG | 0.626295 | tig0014543:+451087 | Msa1354680:CDS |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0014543:+451713 | Msa1354680:CDS |
| ATTGTACCATCCTAAAAGCA+AGG | 0.638231 | tig0014543:-450708 | None:intergenic |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0014543:+451633 | Msa1354680:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0014543:+451612 | Msa1354680:intron |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0014543:-451651 | None:intergenic |
| GTACCATCCTAAAAGCAAGG+AGG | 0.768564 | tig0014543:-450705 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATTACATTTTTCA+GGG | - | tig0014543:450496-450515 | None:intergenic | 10.0% |
| !!! | AAAATGTAATTTTTTTTCTT+AGG | + | tig0014543:450499-450518 | Msa1354680:intron | 10.0% |
| !!! | AAAAAAAATTACATTTTTCA+GGG | - | tig0014543:450496-450515 | None:intergenic | 10.0% |
| !!! | AAAATGTAATTTTTTTTCTT+AGG | + | tig0014543:450499-450518 | Msa1354680:intron | 10.0% |
| !!! | GAAAAAAAATTACATTTTTC+AGG | - | tig0014543:450497-450516 | None:intergenic | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | + | tig0014543:450935-450954 | Msa1354680:intron | 15.0% |
| !!! | GAAAAAAAATTACATTTTTC+AGG | - | tig0014543:450497-450516 | None:intergenic | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | + | tig0014543:450935-450954 | Msa1354680:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | - | tig0014543:450677-450696 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | + | tig0014543:451296-451315 | Msa1354680:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | + | tig0014543:451341-451360 | Msa1354680:intron | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | - | tig0014543:450677-450696 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | + | tig0014543:451296-451315 | Msa1354680:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | + | tig0014543:451341-451360 | Msa1354680:intron | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | - | tig0014543:450456-450475 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | - | tig0014543:450457-450476 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | - | tig0014543:450575-450594 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | - | tig0014543:450576-450595 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | - | tig0014543:450577-450596 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | + | tig0014543:450678-450697 | Msa1354680:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | - | tig0014543:450683-450702 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | - | tig0014543:450820-450839 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | + | tig0014543:451043-451062 | Msa1354680:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | + | tig0014543:451119-451138 | Msa1354680:CDS | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | + | tig0014543:451120-451139 | Msa1354680:CDS | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | + | tig0014543:451187-451206 | Msa1354680:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | + | tig0014543:451197-451216 | Msa1354680:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | - | tig0014543:451260-451279 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | + | tig0014543:451342-451361 | Msa1354680:intron | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | - | tig0014543:451396-451415 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | - | tig0014543:451596-451615 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | - | tig0014543:450456-450475 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | - | tig0014543:450457-450476 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | - | tig0014543:450575-450594 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | - | tig0014543:450576-450595 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | - | tig0014543:450577-450596 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | + | tig0014543:450678-450697 | Msa1354680:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | - | tig0014543:450683-450702 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | - | tig0014543:450820-450839 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | + | tig0014543:451043-451062 | Msa1354680:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | + | tig0014543:451119-451138 | Msa1354680:CDS | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | + | tig0014543:451120-451139 | Msa1354680:CDS | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | + | tig0014543:451187-451206 | Msa1354680:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | + | tig0014543:451197-451216 | Msa1354680:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | - | tig0014543:451260-451279 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | + | tig0014543:451342-451361 | Msa1354680:intron | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | - | tig0014543:451396-451415 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | - | tig0014543:451596-451615 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | - | tig0014543:450451-450470 | None:intergenic | 30.0% |
| !!! | AATTACATTTTTCAGGGTCT+CGG | - | tig0014543:450490-450509 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | + | tig0014543:450543-450562 | Msa1354680:intron | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | + | tig0014543:450620-450639 | Msa1354680:intron | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | - | tig0014543:451176-451195 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | - | tig0014543:451177-451196 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | + | tig0014543:451175-451194 | Msa1354680:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | - | tig0014543:451192-451211 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | + | tig0014543:451190-451209 | Msa1354680:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | + | tig0014543:451196-451215 | Msa1354680:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | - | tig0014543:451586-451605 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | + | tig0014543:451610-451629 | Msa1354680:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | + | tig0014543:451712-451731 | Msa1354680:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | - | tig0014543:450451-450470 | None:intergenic | 30.0% |
| !!! | AATTACATTTTTCAGGGTCT+CGG | - | tig0014543:450490-450509 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | + | tig0014543:450543-450562 | Msa1354680:intron | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | + | tig0014543:450620-450639 | Msa1354680:intron | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | - | tig0014543:451176-451195 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | - | tig0014543:451177-451196 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | + | tig0014543:451175-451194 | Msa1354680:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | - | tig0014543:451192-451211 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | + | tig0014543:451190-451209 | Msa1354680:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | + | tig0014543:451196-451215 | Msa1354680:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | - | tig0014543:451586-451605 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | + | tig0014543:451610-451629 | Msa1354680:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | + | tig0014543:451712-451731 | Msa1354680:CDS | 30.0% |
| !!! | ATTACATTTTTCAGGGTCTC+GGG | - | tig0014543:450489-450508 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | + | tig0014543:450607-450626 | Msa1354680:intron | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | - | tig0014543:450613-450632 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | - | tig0014543:450711-450730 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | + | tig0014543:450974-450993 | Msa1354680:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | - | tig0014543:451002-451021 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | + | tig0014543:451174-451193 | Msa1354680:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | + | tig0014543:451398-451417 | Msa1354680:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | - | tig0014543:451426-451445 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | + | tig0014543:451428-451447 | Msa1354680:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | - | tig0014543:451496-451515 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | - | tig0014543:451506-451525 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | - | tig0014543:451507-451526 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | + | tig0014543:451564-451583 | Msa1354680:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | - | tig0014543:451585-451604 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | + | tig0014543:451609-451628 | Msa1354680:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | + | tig0014543:451611-451630 | Msa1354680:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | - | tig0014543:451713-451732 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | + | tig0014543:451711-451730 | Msa1354680:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | + | tig0014543:451713-451732 | Msa1354680:CDS | 35.0% |
| !!! | ATTACATTTTTCAGGGTCTC+GGG | - | tig0014543:450489-450508 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | + | tig0014543:450607-450626 | Msa1354680:intron | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | - | tig0014543:450613-450632 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | - | tig0014543:450711-450730 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | + | tig0014543:450974-450993 | Msa1354680:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | - | tig0014543:451002-451021 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | + | tig0014543:451174-451193 | Msa1354680:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | + | tig0014543:451398-451417 | Msa1354680:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | - | tig0014543:451426-451445 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | + | tig0014543:451428-451447 | Msa1354680:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | - | tig0014543:451496-451515 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | - | tig0014543:451506-451525 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | - | tig0014543:451507-451526 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | + | tig0014543:451564-451583 | Msa1354680:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | - | tig0014543:451585-451604 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | + | tig0014543:451609-451628 | Msa1354680:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | + | tig0014543:451611-451630 | Msa1354680:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | - | tig0014543:451713-451732 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | + | tig0014543:451711-451730 | Msa1354680:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | + | tig0014543:451713-451732 | Msa1354680:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | + | tig0014543:450364-450383 | Msa1354680:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | - | tig0014543:450395-450414 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | - | tig0014543:450410-450429 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | + | tig0014543:450415-450434 | Msa1354680:intron | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | - | tig0014543:450422-450441 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | - | tig0014543:450488-450507 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | - | tig0014543:450606-450625 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | - | tig0014543:450660-450679 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | - | tig0014543:450664-450683 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | - | tig0014543:450785-450804 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | + | tig0014543:450784-450803 | Msa1354680:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | - | tig0014543:451132-451151 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | - | tig0014543:451153-451172 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | + | tig0014543:451346-451365 | Msa1354680:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | - | tig0014543:451505-451524 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | - | tig0014543:451516-451535 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | - | tig0014543:451526-451545 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | - | tig0014543:451556-451575 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | + | tig0014543:451570-451589 | Msa1354680:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | + | tig0014543:451612-451631 | Msa1354680:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | - | tig0014543:451654-451673 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | + | tig0014543:451657-451676 | Msa1354680:CDS | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | + | tig0014543:450364-450383 | Msa1354680:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | - | tig0014543:450395-450414 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | - | tig0014543:450410-450429 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | + | tig0014543:450415-450434 | Msa1354680:intron | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | - | tig0014543:450422-450441 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | - | tig0014543:450488-450507 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | - | tig0014543:450606-450625 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | - | tig0014543:450660-450679 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | - | tig0014543:450664-450683 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | - | tig0014543:450785-450804 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | + | tig0014543:450784-450803 | Msa1354680:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | - | tig0014543:451132-451151 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | - | tig0014543:451153-451172 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | + | tig0014543:451346-451365 | Msa1354680:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | - | tig0014543:451505-451524 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | - | tig0014543:451516-451535 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | - | tig0014543:451526-451545 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | - | tig0014543:451556-451575 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | + | tig0014543:451570-451589 | Msa1354680:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | + | tig0014543:451612-451631 | Msa1354680:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | - | tig0014543:451654-451673 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | + | tig0014543:451657-451676 | Msa1354680:CDS | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | - | tig0014543:450396-450415 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | - | tig0014543:450487-450506 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | + | tig0014543:450698-450717 | Msa1354680:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | + | tig0014543:450702-450721 | Msa1354680:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | - | tig0014543:450708-450727 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | - | tig0014543:450756-450775 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | - | tig0014543:450757-450776 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | - | tig0014543:450758-450777 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | + | tig0014543:450757-450776 | Msa1354680:CDS | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | + | tig0014543:451103-451122 | Msa1354680:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | + | tig0014543:451207-451226 | Msa1354680:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | + | tig0014543:451351-451370 | Msa1354680:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | + | tig0014543:451368-451387 | Msa1354680:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | + | tig0014543:451441-451460 | Msa1354680:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | + | tig0014543:451616-451635 | Msa1354680:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | + | tig0014543:451617-451636 | Msa1354680:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | + | tig0014543:451633-451652 | Msa1354680:CDS | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | - | tig0014543:451685-451704 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | - | tig0014543:450396-450415 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | - | tig0014543:450487-450506 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | + | tig0014543:450698-450717 | Msa1354680:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | + | tig0014543:450702-450721 | Msa1354680:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | - | tig0014543:450708-450727 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | - | tig0014543:450756-450775 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | - | tig0014543:450757-450776 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | - | tig0014543:450758-450777 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | + | tig0014543:450757-450776 | Msa1354680:CDS | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | + | tig0014543:451103-451122 | Msa1354680:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | + | tig0014543:451207-451226 | Msa1354680:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | + | tig0014543:451351-451370 | Msa1354680:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | + | tig0014543:451368-451387 | Msa1354680:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | + | tig0014543:451441-451460 | Msa1354680:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | + | tig0014543:451616-451635 | Msa1354680:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | + | tig0014543:451617-451636 | Msa1354680:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | + | tig0014543:451633-451652 | Msa1354680:CDS | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | - | tig0014543:451685-451704 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | - | tig0014543:450486-450505 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | + | tig0014543:451135-451154 | Msa1354680:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | + | tig0014543:451410-451429 | Msa1354680:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | + | tig0014543:451449-451468 | Msa1354680:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | - | tig0014543:451541-451560 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | + | tig0014543:451623-451642 | Msa1354680:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | - | tig0014543:451686-451705 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | + | tig0014543:451683-451702 | Msa1354680:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | + | tig0014543:451696-451715 | Msa1354680:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | - | tig0014543:450486-450505 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | + | tig0014543:451135-451154 | Msa1354680:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | + | tig0014543:451410-451429 | Msa1354680:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | + | tig0014543:451449-451468 | Msa1354680:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | - | tig0014543:451541-451560 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | + | tig0014543:451623-451642 | Msa1354680:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | - | tig0014543:451686-451705 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | + | tig0014543:451683-451702 | Msa1354680:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | + | tig0014543:451696-451715 | Msa1354680:CDS | 50.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | - | tig0014543:450485-450504 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | + | tig0014543:451085-451104 | Msa1354680:CDS | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | + | tig0014543:451086-451105 | Msa1354680:CDS | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | - | tig0014543:451094-451113 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | + | tig0014543:451537-451556 | Msa1354680:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | + | tig0014543:451675-451694 | Msa1354680:CDS | 55.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | - | tig0014543:450485-450504 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | + | tig0014543:451085-451104 | Msa1354680:CDS | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | + | tig0014543:451086-451105 | Msa1354680:CDS | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | - | tig0014543:451094-451113 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | + | tig0014543:451537-451556 | Msa1354680:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | + | tig0014543:451675-451694 | Msa1354680:CDS | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | - | tig0014543:450734-450753 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | - | tig0014543:450751-450770 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | + | tig0014543:450749-450768 | Msa1354680:CDS | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | - | tig0014543:451090-451109 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | + | tig0014543:451087-451106 | Msa1354680:CDS | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | - | tig0014543:451091-451110 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | - | tig0014543:450734-450753 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | - | tig0014543:450751-450770 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | + | tig0014543:450749-450768 | Msa1354680:CDS | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | - | tig0014543:451090-451109 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | + | tig0014543:451087-451106 | Msa1354680:CDS | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | - | tig0014543:451091-451110 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | - | tig0014543:450744-450763 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | - | tig0014543:450744-450763 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 450353 | 451752 | 450353 | ID=Msa1354680;Name=Msa1354680 |
| tig0014543 | mRNA | 450353 | 451752 | 450353 | ID=Msa1354680-mRNA-1;Parent=Msa1354680;Name=Msa1354680-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0.25|4|0|128 |
| tig0014543 | exon | 450353 | 450429 | 450353 | ID=Msa1354680-mRNA-1:exon:9176;Parent=Msa1354680-mRNA-1 |
| tig0014543 | exon | 450700 | 450787 | 450700 | ID=Msa1354680-mRNA-1:exon:9177;Parent=Msa1354680-mRNA-1 |
| tig0014543 | exon | 451048 | 451141 | 451048 | ID=Msa1354680-mRNA-1:exon:9178;Parent=Msa1354680-mRNA-1 |
| tig0014543 | exon | 451625 | 451752 | 451625 | ID=Msa1354680-mRNA-1:exon:9179;Parent=Msa1354680-mRNA-1 |
| tig0014543 | CDS | 450353 | 450429 | 450353 | ID=Msa1354680-mRNA-1:cds;Parent=Msa1354680-mRNA-1 |
| tig0014543 | CDS | 450700 | 450787 | 450700 | ID=Msa1354680-mRNA-1:cds;Parent=Msa1354680-mRNA-1 |
| tig0014543 | CDS | 451048 | 451141 | 451048 | ID=Msa1354680-mRNA-1:cds;Parent=Msa1354680-mRNA-1 |
| tig0014543 | CDS | 451625 | 451752 | 451625 | ID=Msa1354680-mRNA-1:cds;Parent=Msa1354680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
