AlfalfaGEDB | Msa1368230

M. sativa cultivar zhongmu-4 / Msa1368230

KEGG: K02992
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368230	YP_009141653.1	100.000	131	0	0	1	131	25	155	1.21e-90	269

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368230	sp\|P07135\|RR7_SOYBN	96.947	131	4	0	1	131	25	155	1.13e-90	262

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368230	A0A0F6NLW0	100.000	131	0	0	1	131	25	155	5.78e-91	269

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0095190	Msa1368230	0.802208	6.255410e-49	-8.615850e-47
Msa1354420	Msa1368230	0.889733	1.859360e-73	-8.615850e-47
Msa1354430	Msa1368230	0.850951	1.218340e-60	-8.615850e-47
Msa1354480	Msa1368230	0.867048	1.823969e-65	-8.615850e-47
Msa1354490	Msa1368230	0.889966	1.508382e-73	-8.615850e-47
Msa1354500	Msa1368230	0.861026	1.369504e-63	-8.615850e-47
Msa1354550	Msa1368230	0.903132	4.758097e-79	-8.615850e-47
Msa1354560	Msa1368230	0.831311	1.794005e-55	-8.615850e-47
Msa1354610	Msa1368230	0.863690	2.079820e-64	-8.615850e-47
Msa1354620	Msa1368230	0.913611	5.035989e-84	-8.615850e-47
Msa1354630	Msa1368230	0.854586	1.115484e-61	-8.615850e-47
Msa1354680	Msa1368230	0.857370	1.710044e-62	-8.615850e-47
Msa1354690	Msa1368230	0.904982	6.937672e-80	-8.615850e-47
Msa1354700	Msa1368230	0.831932	1.261249e-55	-8.615850e-47
Msa1354740	Msa1368230	0.852971	3.251599e-61	-8.615850e-47
Msa1354750	Msa1368230	0.910405	1.943836e-82	-8.615850e-47
Msa1354760	Msa1368230	0.854530	1.157806e-61	-8.615850e-47
Msa1354810	Msa1368230	0.897090	1.969638e-76	-8.615850e-47
Msa1354820	Msa1368230	0.852827	3.575697e-61	-8.615850e-47
Msa1354900	Msa1368230	0.804667	1.935372e-49	-8.615850e-47
Msa1354910	Msa1368230	0.834254	3.333401e-56	-8.615850e-47
Msa1354920	Msa1368230	0.820023	8.538933e-53	-8.615850e-47
Msa1354930	Msa1368230	0.825619	4.246056e-54	-8.615850e-47
Msa1354980	Msa1368230	0.888034	8.443075e-73	-8.615850e-47
Msa1354990	Msa1368230	0.856781	2.550861e-62	-8.615850e-47
Msa1355070	Msa1368230	0.802000	6.905401e-49	-8.615850e-47
Msa1355080	Msa1368230	0.844346	8.000558e-59	-8.615850e-47
Msa1355090	Msa1368230	0.813239	2.830690e-51	-8.615850e-47
Msa1355100	Msa1368230	0.825129	5.546419e-54	-8.615850e-47
Msa1365890	Msa1368230	0.891232	4.792073e-74	-8.615850e-47
Msa1365900	Msa1368230	0.823536	1.313854e-53	-8.615850e-47
Msa1365950	Msa1368230	0.851478	8.648857e-61	-8.615850e-47
Msa1365960	Msa1368230	0.870901	1.028012e-66	-8.615850e-47
Msa1365970	Msa1368230	0.861441	1.023786e-63	-8.615850e-47
Msa1366080	Msa1368230	0.916116	2.622608e-85	-8.615850e-47
Msa1366090	Msa1368230	0.828742	7.592427e-55	-8.615850e-47
Msa1368230	Msa1368240	0.860726	1.689405e-63	-8.615850e-47
Msa1368230	Msa1380590	0.801530	8.620552e-49	-8.615850e-47
Msa1368230	Msa1380600	0.847921	8.516965e-60	-8.615850e-47
Msa1368230	Msa1380620	0.829018	6.508739e-55	-8.615850e-47
Msa1368230	Msa1380690	0.815646	8.309878e-52	-8.615850e-47
Msa1368230	Msa1385410	0.881828	1.735293e-70	-8.615850e-47
Msa1368230	Msa1385420	0.817319	3.507358e-52	-8.615850e-47
Msa1368230	Msa1391090	0.848340	6.525843e-60	-8.615850e-47
Msa1368230	Msa1391100	0.890783	7.205978e-74	-8.615850e-47
Msa1368230	Msa1391110	0.844582	6.916191e-59	-8.615850e-47
Msa1368230	Msa1391160	0.873403	1.510504e-67	-8.615850e-47
Msa1368230	Msa1391170	0.853410	2.434915e-61	-8.615850e-47
Msa1368230	Msa1391220	0.841296	5.177748e-58	-8.615850e-47
Msa1368230	Msa1391230	0.893134	8.335008e-75	-8.615850e-47
Msa1368230	Msa1391240	0.868390	6.767343e-66	-8.615850e-47
Msa1368230	Msa1394030	0.810146	1.332782e-50	-8.615850e-47
Msa1368230	Msa1394040	0.856770	2.569983e-62	-8.615850e-47
Msa1368230	Msa1394150	0.833222	6.036513e-56	-8.615850e-47
Msa1368230	Msa1394160	0.812785	3.559983e-51	-8.615850e-47
Msa1368230	Msa1394210	0.833871	4.157898e-56	-8.615850e-47
Msa1368230	Msa1394220	0.814019	1.906912e-51	-8.615850e-47
Msa1368230	Msa1394230	0.805830	1.104435e-49	-8.615850e-47
Msa1368230	Msa1460120	0.836322	1.001801e-56	-8.615850e-47
Msa1368230	Msa1460130	0.860799	1.605886e-63	-8.615850e-47
Msa0139800	Msa1368230	0.802510	5.421069e-49	-8.615850e-47
Msa0202640	Msa1368230	0.829697	4.452607e-55	-8.615850e-47
Msa1305090	Msa1368230	0.839053	1.993838e-57	-8.615850e-47
Msa0370210	Msa1368230	0.815210	1.038782e-51	-8.615850e-47
Msa0398630	Msa1368230	0.805481	1.307554e-49	-8.615850e-47
Msa0405420	Msa1368230	0.844558	7.016449e-59	-8.615850e-47
Msa0405430	Msa1368230	0.851392	9.144476e-61	-8.615850e-47
Msa0405440	Msa1368230	0.840165	1.024705e-57	-8.615850e-47
Msa0405510	Msa1368230	0.864929	8.533302e-65	-8.615850e-47
Msa0405520	Msa1368230	0.840132	1.045064e-57	-8.615850e-47
Msa0405530	Msa1368230	0.847594	1.047666e-59	-8.615850e-47
Msa0983630	Msa1368230	0.911973	3.311808e-83	-8.615850e-47
Msa0983640	Msa1368230	0.841229	5.391841e-58	-8.615850e-47
Msa0983720	Msa1368230	0.806999	6.262790e-50	-8.615850e-47
Msa1022050	Msa1368230	0.901385	2.827317e-78	-8.615850e-47
Msa1022060	Msa1368230	0.822311	2.535235e-53	-8.615850e-47
Msa1064410	Msa1368230	0.837893	3.972662e-57	-8.615850e-47
Msa1086070	Msa1368230	0.809514	1.822134e-50	-8.615850e-47
Msa1086080	Msa1368230	0.836627	8.374651e-57	-8.615850e-47
Msa1086090	Msa1368230	0.810780	9.721351e-51	-8.615850e-47
Msa1086100	Msa1368230	0.805447	1.329310e-49	-8.615850e-47
Msa1086140	Msa1368230	0.825961	3.523416e-54	-8.615850e-47
Msa1086150	Msa1368230	0.815511	8.903579e-52	-8.615850e-47
Msa1086180	Msa1368230	0.806506	7.958997e-50	-8.615850e-47
Msa1086190	Msa1368230	0.841888	3.614962e-58	-8.615850e-47
Msa1086200	Msa1368230	0.817001	4.135886e-52	-8.615850e-47
Msa1086210	Msa1368230	0.809740	1.629459e-50	-8.615850e-47
Msa1086250	Msa1368230	0.807964	3.908299e-50	-8.615850e-47
Msa1086270	Msa1368230	0.837325	5.554789e-57	-8.615850e-47
Msa1086280	Msa1368230	0.812911	3.341094e-51	-8.615850e-47
Msa1086380	Msa1368230	0.817778	2.764188e-52	-8.615850e-47
Msa1086450	Msa1368230	0.812464	4.184988e-51	-8.615850e-47
Msa1086470	Msa1368230	0.806771	6.995250e-50	-8.615850e-47
Msa1086550	Msa1368230	0.842857	2.001579e-58	-8.615850e-47
Msa1086560	Msa1368230	0.806461	8.135883e-50	-8.615850e-47
Msa1086590	Msa1368230	0.876320	1.533462e-68	-8.615850e-47
Msa1086600	Msa1368230	0.860541	1.921915e-63	-8.615850e-47
Msa1086720	Msa1368230	0.861615	9.061394e-64	-8.615850e-47
Msa1086730	Msa1368230	0.904353	1.341444e-79	-8.615850e-47
Msa1086740	Msa1368230	0.863304	2.739928e-64	-8.615850e-47
Msa1086790	Msa1368230	0.891946	2.495592e-74	-8.615850e-47
Msa1086800	Msa1368230	0.857506	1.558451e-62	-8.615850e-47
Msa1086880	Msa1368230	0.807116	5.914906e-50	-8.615850e-47
Msa1086890	Msa1368230	0.832349	9.945372e-56	-8.615850e-47
Msa1086900	Msa1368230	0.813955	1.969824e-51	-8.615850e-47
Msa1086960	Msa1368230	0.877947	4.175577e-69	-8.615850e-47
Msa1086970	Msa1368230	0.849710	2.714587e-60	-8.615850e-47
Msa1087030	Msa1368230	0.864030	1.629625e-64	-8.615850e-47
Msa1087040	Msa1368230	0.881795	1.783445e-70	-8.615850e-47
Msa1087050	Msa1368230	0.860867	1.531402e-63	-8.615850e-47
Msa1087110	Msa1368230	0.894409	2.534960e-75	-8.615850e-47
Msa1087120	Msa1368230	0.833035	6.720259e-56	-8.615850e-47
Msa0263770	Msa1368230	0.839636	1.407740e-57	-8.615850e-47
Msa0268170	Msa1368230	0.803291	3.738325e-49	-8.615850e-47
Msa0268250	Msa1368230	0.855520	5.969258e-62	-8.615850e-47
Msa0268260	Msa1368230	0.880874	3.831145e-70	-8.615850e-47
Msa0268270	Msa1368230	0.875082	4.077271e-68	-8.615850e-47
Msa0268300	Msa1368230	0.863447	2.472608e-64	-8.615850e-47
Msa0268310	Msa1368230	0.848716	5.132820e-60	-8.615850e-47
Msa0268390	Msa1368230	0.825298	5.059449e-54	-8.615850e-47
Msa0268400	Msa1368230	0.800083	1.702258e-48	-8.615850e-47
Msa0268410	Msa1368230	0.816050	6.751043e-52	-8.615850e-47
Msa0268550	Msa1368230	0.824254	8.919174e-54	-8.615850e-47
Msa0268560	Msa1368230	0.833457	5.275259e-56	-8.615850e-47
Msa0268570	Msa1368230	0.804096	2.544654e-49	-8.615850e-47
Msa0268580	Msa1368230	0.822800	1.951627e-53	-8.615850e-47
Msa0268630	Msa1368230	0.818332	2.071365e-52	-8.615850e-47
Msa0268640	Msa1368230	0.818350	2.052315e-52	-8.615850e-47
Msa0268740	Msa1368230	0.848673	5.276017e-60	-8.615850e-47
Msa0268750	Msa1368230	0.809361	1.965111e-50	-8.615850e-47
Msa0268830	Msa1368230	0.840193	1.007755e-57	-8.615850e-47
Msa0268840	Msa1368230	0.813823	2.106035e-51	-8.615850e-47
Msa0268940	Msa1368230	0.812086	5.058735e-51	-8.615850e-47
Msa0268950	Msa1368230	0.845919	3.007170e-59	-8.615850e-47
Msa0268960	Msa1368230	0.823379	1.430011e-53	-8.615850e-47
Msa0269040	Msa1368230	0.835828	1.336840e-56	-8.615850e-47
Msa0269050	Msa1368230	0.825093	5.657578e-54	-8.615850e-47
Msa0269130	Msa1368230	0.864550	1.121458e-64	-8.615850e-47
Msa0269140	Msa1368230	0.916664	1.357283e-85	-8.615850e-47
Msa0269150	Msa1368230	0.879645	1.052607e-69	-8.615850e-47
Msa0344190	Msa1368230	0.823203	1.572069e-53	-8.615850e-47
Msa0344300	Msa1368230	0.807117	5.910760e-50	-8.615850e-47
Msa0344310	Msa1368230	0.839400	1.620761e-57	-8.615850e-47
Msa1143120	Msa1368230	0.831681	1.454592e-55	-8.615850e-47
Msa1143160	Msa1368230	0.834291	3.263727e-56	-8.615850e-47
Msa1143170	Msa1368230	0.821992	3.005816e-53	-8.615850e-47
Msa1143180	Msa1368230	0.817304	3.535131e-52	-8.615850e-47
Msa0582510	Msa1368230	0.834848	2.363245e-56	-8.615850e-47
Msa0582520	Msa1368230	0.816211	6.215299e-52	-8.615850e-47
Msa0582630	Msa1368230	0.834342	3.167704e-56	-8.615850e-47
Msa0582640	Msa1368230	0.843091	1.733943e-58	-8.615850e-47
Msa0582650	Msa1368230	0.803055	4.184534e-49	-8.615850e-47
Msa0582660	Msa1368230	0.819752	9.847958e-53	-8.615850e-47
Msa0582690	Msa1368230	0.834239	3.363371e-56	-8.615850e-47
Msa0582700	Msa1368230	0.817127	3.873755e-52	-8.615850e-47
Msa0582750	Msa1368230	0.817086	3.957906e-52	-8.615850e-47
Msa0582760	Msa1368230	0.851105	1.102388e-60	-8.615850e-47
Msa0582780	Msa1368230	0.829096	6.230433e-55	-8.615850e-47
Msa0582810	Msa1368230	0.839669	1.380049e-57	-8.615850e-47
Msa0582820	Msa1368230	0.812749	3.624954e-51	-8.615850e-47
Msa0582910	Msa1368230	0.837002	6.718338e-57	-8.615850e-47
Msa0582920	Msa1368230	0.803093	4.108331e-49	-8.615850e-47
Msa0582930	Msa1368230	0.822583	2.191853e-53	-8.615850e-47
Msa0591290	Msa1368230	0.837140	6.196658e-57	-8.615850e-47
Msa0591310	Msa1368230	0.842920	1.925078e-58	-8.615850e-47
Msa0591350	Msa1368230	0.859198	4.881485e-63	-8.615850e-47
Msa0591360	Msa1368230	0.812531	4.044904e-51	-8.615850e-47
Msa0591380	Msa1368230	0.821065	4.920612e-53	-8.615850e-47
Msa0867680	Msa1368230	0.888411	6.048463e-73	-8.615850e-47
Msa0867690	Msa1368230	0.838521	2.737351e-57	-8.615850e-47
Msa0876520	Msa1368230	0.821521	3.863747e-53	-8.615850e-47
Msa0908220	Msa1368230	0.853743	1.952896e-61	-8.615850e-47
Msa0908230	Msa1368230	0.899197	2.513990e-77	-8.615850e-47
Msa0908240	Msa1368230	0.849214	3.732888e-60	-8.615850e-47
Msa0908310	Msa1368230	0.878644	2.377454e-69	-8.615850e-47
Msa0908320	Msa1368230	0.845875	3.090907e-59	-8.615850e-47
Msa0908370	Msa1368230	0.880186	6.753163e-70	-8.615850e-47
Msa0908380	Msa1368230	0.821497	3.913624e-53	-8.615850e-47
Msa0908430	Msa1368230	0.845410	4.132428e-59	-8.615850e-47
Msa0908440	Msa1368230	0.920925	6.896610e-88	-8.615850e-47
Msa0908450	Msa1368230	0.866293	3.170395e-65	-8.615850e-47
Msa0908480	Msa1368230	0.809752	1.619637e-50	-8.615850e-47
Msa0908530	Msa1368230	0.893488	6.000382e-75	-8.615850e-47
Msa0908540	Msa1368230	0.868821	4.909776e-66	-8.615850e-47
Msa0908590	Msa1368230	0.832240	1.058072e-55	-8.615850e-47
Msa0908600	Msa1368230	0.899751	1.453397e-77	-8.615850e-47
Msa0908610	Msa1368230	0.823881	1.090680e-53	-8.615850e-47
Msa0908650	Msa1368230	0.854216	1.426527e-61	-8.615850e-47
Msa0908660	Msa1368230	0.911391	6.411772e-83	-8.615850e-47
Msa0908670	Msa1368230	0.877872	4.432542e-69	-8.615850e-47
Msa0908720	Msa1368230	0.881268	2.765170e-70	-8.615850e-47
Msa0908730	Msa1368230	0.854414	1.250573e-61	-8.615850e-47
Msa0911190	Msa1368230	0.834081	3.683853e-56	-8.615850e-47
Msa0911200	Msa1368230	0.839647	1.398307e-57	-8.615850e-47
Msa0911230	Msa1368230	0.806140	9.503249e-50	-8.615850e-47
Msa0924830	Msa1368230	0.818979	1.477482e-52	-8.615850e-47
Msa0924870	Msa1368230	0.819612	1.059826e-52	-8.615850e-47
Msa0924890	Msa1368230	0.801754	7.757264e-49	-8.615850e-47
Msa0924930	Msa1368230	0.893465	6.127755e-75	-8.615850e-47
Msa0924940	Msa1368230	0.834745	2.509394e-56	-8.615850e-47
Msa0925100	Msa1368230	0.876352	1.495463e-68	-8.615850e-47
Msa0925110	Msa1368230	0.849093	4.034322e-60	-8.615850e-47
Msa0931070	Msa1368230	0.832733	7.989408e-56	-8.615850e-47
Msa0931130	Msa1368230	0.826366	2.822509e-54	-8.615850e-47
Msa0931140	Msa1368230	0.818506	1.892227e-52	-8.615850e-47
Msa0931220	Msa1368230	0.824895	6.300605e-54	-8.615850e-47
Msa0931230	Msa1368230	0.801511	8.699194e-49	-8.615850e-47
Msa0931240	Msa1368230	0.801048	1.082037e-48	-8.615850e-47
Msa0931260	Msa1368230	0.844048	9.624423e-59	-8.615850e-47
Msa0931270	Msa1368230	0.825551	4.408013e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368230	MtrunA17_CPg0492421	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1368230	MtrunA17_Chr4g0016101	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1368230	MtrunA17_Chr3g0090841	91.729	133	9	1	1	131	25	157	1.30e-85	246
Msa1368230	MtrunA17_Chr4g0002541	83.333	60	10	0	1	60	1	60	3.60e-30	103
Msa1368230	MtrunA17_Chr4g0057401	87.500	40	5	0	92	131	1	40	1.06e-17	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368230	ATCG00900.1	95.420	131	6	0	1	131	25	155	7.02e-91	260
Msa1368230	ATCG01240.1	95.420	131	6	0	1	131	25	155	7.02e-91	260
Msa1368230	ATMG01270.1	33.824	136	80	3	2	131	15	146	3.86e-18	75.5
Msa1368230	AT2G07696.1	33.824	136	80	3	2	131	15	146	3.86e-18	75.5

Find 25 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGCCATTCGTTGGTTATT+AGG	0.268444	tig0018631:-1077	Msa1368230:CDS
CATCAAGTTCCCGTTGAAAT+AGG	0.307921	tig0018631:-1119	Msa1368230:CDS
AAAACGTCCAGGTCGAAATA+TGG	0.317789	tig0018631:-1045	Msa1368230:CDS
CAAATTAAGTTCCGAATTAG+TGG	0.342047	tig0018631:-1018	Msa1368230:CDS
TGGCGATGCCATACGCAAAA+AGG	0.366109	tig0018631:-979	Msa1368230:CDS
TTTGGCAGCATCCACTAATT+CGG	0.404543	tig0018631:+1007	None:intergenic
ACGTATTGCTTGACGTAAAA+CGG	0.405511	tig0018631:+1193	None:intergenic
GCTTGACGTAAAACGGATAG+TGG	0.418362	tig0018631:+1200	None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG	0.427761	tig0018631:-1149	Msa1368230:CDS
TATGGCATCGCCATTCCCTT+TGG	0.436234	tig0018631:+989	None:intergenic
TGTGTGGATCCTATTTCAAC+GGG	0.470768	tig0018631:+1110	None:intergenic
TTATCTATCGAGCTATGAAA+AGG	0.512086	tig0018631:-1247	Msa1368230:CDS
GAAAAGCACTTGCCATTCGT+TGG	0.526859	tig0018631:-1085	Msa1368230:CDS
GTGGATGCTGCCAAAGGGAA+TGG	0.532446	tig0018631:-999	Msa1368230:CDS
GGCGCATCCCGAAAACGTCC+AGG	0.540732	tig0018631:-1056	Msa1368230:CDS
AAAGGAAGAGACTCATAGAA+TGG	0.548096	tig0018631:-961	Msa1368230:CDS
TTGTGTGGATCCTATTTCAA+CGG	0.548545	tig0018631:+1109	None:intergenic
AATTAGTGGATGCTGCCAAA+GGG	0.575951	tig0018631:-1004	Msa1368230:CDS
GAATTAGTGGATGCTGCCAA+AGG	0.584526	tig0018631:-1005	Msa1368230:CDS
AGAGACTCATAGAATGGCAG+AGG	0.593635	tig0018631:-955	Msa1368230:CDS
TTGAAAGCCATATTTCGACC+TGG	0.605724	tig0018631:+1038	None:intergenic
TGCGCCTAATAACCAACGAA+TGG	0.620213	tig0018631:+1073	None:intergenic
GTTAACCGTATTATGAAACA+CGG	0.650772	tig0018631:-1293	Msa1368230:CDS
TTTACGTCAAGCAATACGTG+GGG	0.715577	tig0018631:-1189	Msa1368230:CDS
GTTGAAATAGGATCCACACA+AGG	0.731975	tig0018631:-1107	Msa1368230:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTTTCCGTGTTTCATAATA+CGG	+	tig0018631:940-959	None:intergenic	25.0%
	GTTAACCGTATTATGAAACA+CGG	-	tig0018631:932-951	Msa1368230:CDS	30.0%
	GAAACACGGAAAAAAATCAT+TGG	-	tig0018631:946-965	Msa1368230:CDS	30.0%
	TTATCTATCGAGCTATGAAA+AGG	-	tig0018631:978-997	Msa1368230:CDS	30.0%
!!	TCTTGCTTTTACTGCTATAT+CGG	+	tig0018631:1068-1087	None:intergenic	30.0%
	CAAATTAAGTTCCGAATTAG+TGG	-	tig0018631:1207-1226	Msa1368230:CDS	30.0%
	ACGTATTGCTTGACGTAAAA+CGG	+	tig0018631:1035-1054	None:intergenic	35.0%
!	TTTTACGTCAAGCAATACGT+GGG	-	tig0018631:1035-1054	Msa1368230:CDS	35.0%
!!	CTTGCTTTTACTGCTATATC+GGG	+	tig0018631:1067-1086	None:intergenic	35.0%
	TTGTGTGGATCCTATTTCAA+CGG	+	tig0018631:1119-1138	None:intergenic	35.0%
	AAAGGAAGAGACTCATAGAA+TGG	-	tig0018631:1264-1283	Msa1368230:CDS	35.0%
!	GTTTTACGTCAAGCAATACG+TGG	-	tig0018631:1034-1053	Msa1368230:CDS	40.0%
	TTTACGTCAAGCAATACGTG+GGG	-	tig0018631:1036-1055	Msa1368230:CDS	40.0%
	GTAAAAGCAAGACGCGTAAA+CGG	-	tig0018631:1076-1095	Msa1368230:CDS	40.0%
	CATCAAGTTCCCGTTGAAAT+AGG	-	tig0018631:1106-1125	Msa1368230:CDS	40.0%
	TGTGTGGATCCTATTTCAAC+GGG	+	tig0018631:1118-1137	None:intergenic	40.0%
	GTTGAAATAGGATCCACACA+AGG	-	tig0018631:1118-1137	Msa1368230:CDS	40.0%
!	CTTGCCATTCGTTGGTTATT+AGG	-	tig0018631:1148-1167	Msa1368230:CDS	40.0%
!	TATTTCGACCTGGACGTTTT+CGG	+	tig0018631:1180-1199	None:intergenic	40.0%
	AAAACGTCCAGGTCGAAATA+TGG	-	tig0018631:1180-1199	Msa1368230:CDS	40.0%
	TTGAAAGCCATATTTCGACC+TGG	+	tig0018631:1190-1209	None:intergenic	40.0%
	TTTGGCAGCATCCACTAATT+CGG	+	tig0018631:1221-1240	None:intergenic	40.0%
!	AATTAGTGGATGCTGCCAAA+GGG	-	tig0018631:1221-1240	Msa1368230:CDS	40.0%
!	AGTCTCTTCCTTTTTGCGTA+TGG	+	tig0018631:1257-1276	None:intergenic	40.0%
	GCTTGACGTAAAACGGATAG+TGG	+	tig0018631:1028-1047	None:intergenic	45.0%
!!	GAAAAGCACTTGCCATTCGT+TGG	-	tig0018631:1140-1159	Msa1368230:CDS	45.0%
	TGCGCCTAATAACCAACGAA+TGG	+	tig0018631:1155-1174	None:intergenic	45.0%
!	ATTTCGACCTGGACGTTTTC+GGG	+	tig0018631:1179-1198	None:intergenic	45.0%
!	GAATTAGTGGATGCTGCCAA+AGG	-	tig0018631:1220-1239	Msa1368230:CDS	45.0%
	AGAGACTCATAGAATGGCAG+AGG	-	tig0018631:1270-1289	Msa1368230:CDS	45.0%
!	GGCAAGTGCTTTTCCTTGTG+TGG	+	tig0018631:1134-1153	None:intergenic	50.0%
	TATGGCATCGCCATTCCCTT+TGG	+	tig0018631:1239-1258	None:intergenic	50.0%
	TGGCGATGCCATACGCAAAA+AGG	-	tig0018631:1246-1265	Msa1368230:CDS	50.0%
	GTGGATGCTGCCAAAGGGAA+TGG	-	tig0018631:1226-1245	Msa1368230:CDS	55.0%
	GGCGCATCCCGAAAACGTCC+AGG	-	tig0018631:1169-1188	Msa1368230:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0018631	gene	926	1321	926	ID=Msa1368230;Name=Msa1368230
tig0018631	mRNA	926	1321	926	ID=Msa1368230-mRNA-1;Parent=Msa1368230;Name=Msa1368230-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|131
tig0018631	exon	926	1321	926	ID=Msa1368230-mRNA-1:exon:385;Parent=Msa1368230-mRNA-1
tig0018631	CDS	926	1321	926	ID=Msa1368230-mRNA-1:cds;Parent=Msa1368230-mRNA-1

Gene Sequence

>Msa1368230

ATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

>Msa1368230

MLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFR*