AlfalfaGEDB | Msa0908530

M. sativa cultivar zhongmu-4 / Msa0908530

KEGG: K02992|K05573
GO: -
PFAM: PF00177.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908530	AES69829.1	66.758	364	42	6	52	336	26	389	1.08e-134	414

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908530	sp\|Q9GE26\|RR7_AMBTC	93.182	132	5	1	144	271	23	154	1.07e-81	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0095190	Msa0908530	0.820828	5.580510e-53	-8.615850e-47
Msa0126750	Msa0908530	0.809917	1.492652e-50	-8.615850e-47
Msa0139800	Msa0908530	0.829506	4.956447e-55	-8.615850e-47
Msa0139810	Msa0908530	0.819436	1.162569e-52	-8.615850e-47
Msa0202640	Msa0908530	0.847268	1.287221e-59	-8.615850e-47
Msa0221840	Msa0908530	0.808159	3.551881e-50	-8.615850e-47
Msa0263770	Msa0908530	0.868162	8.013236e-66	-8.615850e-47
Msa0268170	Msa0908530	0.851474	8.671135e-61	-8.615850e-47
Msa0268190	Msa0908530	0.817285	3.569314e-52	-8.615850e-47
Msa0268250	Msa0908530	0.866591	2.550244e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908530	MtrunA17_CPg0492421	88.806	134	9	2	144	271	23	156	1.71e-76	231
Msa0908530	MtrunA17_Chr4g0016101	88.806	134	9	2	144	271	23	156	1.71e-76	231
Msa0908530	MtrunA17_Chr3g0090841	88.806	134	9	2	144	271	23	156	1.71e-76	231
Msa0908530	MtrunA17_CPg0492431	96.875	64	2	0	273	336	4	67	5.37e-35	129
Msa0908530	MtrunA17_Chr3g0090851	96.875	64	2	0	273	336	4	67	5.37e-35	129
Msa0908530	MtrunA17_Chr4g0016091	96.875	64	2	0	273	336	4	67	5.37e-35	129
Msa0908530	MtrunA17_Chr4g0002541	83.333	60	10	0	146	205	1	60	8.38e-28	103
Msa0908530	MtrunA17_Chr4g0057401	87.179	39	5	0	233	271	1	39	6.31e-15	68.2
Msa0908530	MtrunA17_CPg0492401	78.947	38	8	0	52	89	6	43	4.76e-14	65.9
Msa0908530	MtrunA17_Chr7g0234981	82.353	34	6	0	110	143	49	82	7.44e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908530	ATCG00900.1	92.424	132	6	1	144	271	23	154	7.33e-82	245
Msa0908530	ATCG01240.1	92.424	132	6	1	144	271	23	154	7.33e-82	245
Msa0908530	ATCG00905.1	91.176	34	3	0	110	143	41	74	4.09e-14	67.4
Msa0908530	ATCG01230.1	91.176	34	3	0	110	143	41	74	4.09e-14	67.4
Msa0908530	ATMG01270.1	30.657	137	87	3	144	273	12	147	1.30e-11	62.4
Msa0908530	AT2G07696.1	30.657	137	87	3	144	273	12	147	1.30e-11	62.4

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Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTCCAGGTCGAAATA+TGG	0.317789	6_2:+9719402	Msa0908530:CDS
AAAAGGATTCCTATTCTAAA+GGG	0.399720	6_2:+9718391	Msa0908530:CDS
AAAGGAAGAGACTCATAGAA+TGG	0.548096	6_2:+9719486	Msa0908530:CDS
AAGTTTAGTAATGAGCATAA+CGG	0.644237	6_2:+9719967	Msa0908530:CDS
AATTAGTGGATGCTGCCAAA+GGG	0.575951	6_2:+9719443	Msa0908530:CDS
ACAATGTGATATCTCACACC+AGG	0.678462	6_2:-9718922	None:intergenic
ACAGCGACAAAATGGAAGAC+TGG	0.588097	6_2:+9718028	Msa0908530:CDS
ACCCACCAAAGCACGAAAGC+GGG	0.461764	6_2:+9718357	Msa0908530:CDS
ACGTATTGCTTGACGTAAAA+CGG	0.405511	6_2:-9719254	None:intergenic
AGAGACTCATAGAATGGCAG+AGG	0.593635	6_2:+9719492	Msa0908530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACCATATAATATTTATGGG+GGG	-	chr6_2:9717140-9717159	None:intergenic	30.0%
GGACCATATAATATTTATGG+GGG	-	chr6_2:9717141-9717160	None:intergenic	30.0%
TGGAAAAATTCACATTGCAT+TGG	+	chr6_2:9717224-9717243	Msa0908530:CDS	30.0%
GGAAAAATTCACATTGCATT+GGG	+	chr6_2:9717225-9717244	Msa0908530:CDS	30.0%
TAGTTAATCCTATTTCGGAT+AGG	-	chr6_2:9717503-9717522	None:intergenic	30.0%
ATCCGAAATAGGATTAACTA+TGG	+	chr6_2:9717503-9717522	Msa0908530:intron	30.0%
AAATCGTCTTTAGTTAGATG+GGG	-	chr6_2:9717553-9717572	None:intergenic	30.0%
CAAAATCGTCTTTAGTTAGA+TGG	-	chr6_2:9717555-9717574	None:intergenic	30.0%
TATCACTACAACAAGCATAA+TGG	+	chr6_2:9717814-9717833	Msa0908530:intron	30.0%
AGTGAAAAGGATGATTCATT+CGG	+	chr6_2:9717891-9717910	Msa0908530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	9717094	9720024	9717094	ID=Msa0908530;Name=Msa0908530
chr6_2	mRNA	9717094	9720024	9717094	ID=Msa0908530-mRNA-1;Parent=Msa0908530;Name=Msa0908530-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0\|0\|0\|1\|0\|0\|7\|0\|336
chr6_2	exon	9717094	9717246	9717094	ID=Msa0908530-mRNA-1:exon:2401;Parent=Msa0908530-mRNA-1
chr6_2	exon	9717969	9718058	9717969	ID=Msa0908530-mRNA-1:exon:2402;Parent=Msa0908530-mRNA-1
chr6_2	exon	9718319	9718412	9718319	ID=Msa0908530-mRNA-1:exon:2403;Parent=Msa0908530-mRNA-1
chr6_2	exon	9718896	9718988	9718896	ID=Msa0908530-mRNA-1:exon:2404;Parent=Msa0908530-mRNA-1
chr6_2	exon	9719143	9719379	9719143	ID=Msa0908530-mRNA-1:exon:2405;Parent=Msa0908530-mRNA-1
chr6_2	exon	9719392	9719538	9719392	ID=Msa0908530-mRNA-1:exon:2406;Parent=Msa0908530-mRNA-1
chr6_2	exon	9719831	9720024	9719831	ID=Msa0908530-mRNA-1:exon:2407;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9717094	9717246	9717094	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9717969	9718058	9717969	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9718319	9718412	9718319	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9718896	9718988	9718896	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9719143	9719379	9719143	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9719392	9719538	9719392	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1
chr6_2	CDS	9719831	9720024	9719831	ID=Msa0908530-mRNA-1:cds;Parent=Msa0908530-mRNA-1

Gene Sequence

>Msa0908530

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa0908530

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI