Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086590 | XP_038696004.1 | 73.158 | 190 | 43 | 3 | 22 | 207 | 45 | 230 | 4.55e-71 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086590 | sp|P0CC61|NU2C2_EUCGG | 91.463 | 82 | 7 | 0 | 126 | 207 | 4 | 85 | 1.66e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086590 | A0A3S4Q2V5 | 71.579 | 190 | 38 | 5 | 27 | 207 | 50 | 232 | 4.39e-71 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0405420 | Msa1086590 | 0.823613 | 1.260514e-53 | -8.615850e-47 |
| Msa0405430 | Msa1086590 | 0.850771 | 1.369237e-60 | -8.615850e-47 |
| Msa0405510 | Msa1086590 | 0.844535 | 7.118646e-59 | -8.615850e-47 |
| Msa0405520 | Msa1086590 | 0.845236 | 4.605168e-59 | -8.615850e-47 |
| Msa0983630 | Msa1086590 | 0.871190 | 8.253625e-67 | -8.615850e-47 |
| Msa0983640 | Msa1086590 | 0.837548 | 4.871777e-57 | -8.615850e-47 |
| Msa1022050 | Msa1086590 | 0.853026 | 3.136266e-61 | -8.615850e-47 |
| Msa1022060 | Msa1086590 | 0.823155 | 1.612382e-53 | -8.615850e-47 |
| Msa1064410 | Msa1086590 | 0.800570 | 1.354342e-48 | -8.615850e-47 |
| Msa1086080 | Msa1086590 | 0.803428 | 3.502860e-49 | -8.615850e-47 |
| Msa1086190 | Msa1086590 | 0.806821 | 6.830068e-50 | -8.615850e-47 |
| Msa1086550 | Msa1086590 | 0.811383 | 7.194520e-51 | -8.615850e-47 |
| Msa1086560 | Msa1086590 | 0.832591 | 8.664223e-56 | -8.615850e-47 |
| Msa1086590 | Msa1086600 | 0.831841 | 1.328105e-55 | -8.615850e-47 |
| Msa1086590 | Msa1086720 | 0.823967 | 1.041223e-53 | -8.615850e-47 |
| Msa1086590 | Msa1086730 | 0.873917 | 1.014017e-67 | -8.615850e-47 |
| Msa1086590 | Msa1086740 | 0.821357 | 4.216119e-53 | -8.615850e-47 |
| Msa1086590 | Msa1086790 | 0.864427 | 1.225190e-64 | -8.615850e-47 |
| Msa1086590 | Msa1086800 | 0.829315 | 5.513256e-55 | -8.615850e-47 |
| Msa1086590 | Msa1086890 | 0.803855 | 2.856250e-49 | -8.615850e-47 |
| Msa1086590 | Msa1086960 | 0.838351 | 3.028805e-57 | -8.615850e-47 |
| Msa1086590 | Msa1086970 | 0.840061 | 1.090863e-57 | -8.615850e-47 |
| Msa1086590 | Msa1087030 | 0.821512 | 3.882380e-53 | -8.615850e-47 |
| Msa1086590 | Msa1087040 | 0.877683 | 5.161125e-69 | -8.615850e-47 |
| Msa1086590 | Msa1087050 | 0.827818 | 1.268137e-54 | -8.615850e-47 |
| Msa1086590 | Msa1087110 | 0.857789 | 1.284643e-62 | -8.615850e-47 |
| Msa1086590 | Msa1087120 | 0.847482 | 1.124882e-59 | -8.615850e-47 |
| Msa1086590 | Msa1143120 | 0.804699 | 1.905791e-49 | -8.615850e-47 |
| Msa1086590 | Msa1305090 | 0.804410 | 2.189384e-49 | -8.615850e-47 |
| Msa1086590 | Msa1354420 | 0.863826 | 1.886422e-64 | -8.615850e-47 |
| Msa1086590 | Msa1354430 | 0.836031 | 1.187684e-56 | -8.615850e-47 |
| Msa1086590 | Msa1354480 | 0.839612 | 1.427642e-57 | -8.615850e-47 |
| Msa1086590 | Msa1354490 | 0.884885 | 1.308499e-71 | -8.615850e-47 |
| Msa1086590 | Msa1354500 | 0.811543 | 6.642189e-51 | -8.615850e-47 |
| Msa1086590 | Msa1354550 | 0.879302 | 1.391983e-69 | -8.615850e-47 |
| Msa1086590 | Msa1354560 | 0.820525 | 6.551971e-53 | -8.615850e-47 |
| Msa1086590 | Msa1354610 | 0.833443 | 5.318713e-56 | -8.615850e-47 |
| Msa1086590 | Msa1354620 | 0.870477 | 1.416719e-66 | -8.615850e-47 |
| Msa1086590 | Msa1354630 | 0.815213 | 1.037279e-51 | -8.615850e-47 |
| Msa1086590 | Msa1354680 | 0.813836 | 2.091889e-51 | -8.615850e-47 |
| Msa1086590 | Msa1354690 | 0.856393 | 3.316745e-62 | -8.615850e-47 |
| Msa1086590 | Msa1354700 | 0.815971 | 7.033228e-52 | -8.615850e-47 |
| Msa1086590 | Msa1354740 | 0.837420 | 5.254336e-57 | -8.615850e-47 |
| Msa1086590 | Msa1354750 | 0.896739 | 2.762483e-76 | -8.615850e-47 |
| Msa1086590 | Msa1354760 | 0.809239 | 2.087284e-50 | -8.615850e-47 |
| Msa1086590 | Msa1354810 | 0.869690 | 2.563973e-66 | -8.615850e-47 |
| Msa1086590 | Msa1354820 | 0.829246 | 5.731684e-55 | -8.615850e-47 |
| Msa1086590 | Msa1354910 | 0.814871 | 1.235497e-51 | -8.615850e-47 |
| Msa1086590 | Msa1354980 | 0.863426 | 2.510146e-64 | -8.615850e-47 |
| Msa1086590 | Msa1354990 | 0.827137 | 1.846900e-54 | -8.615850e-47 |
| Msa1086590 | Msa1355080 | 0.800240 | 1.581220e-48 | -8.615850e-47 |
| Msa1086590 | Msa1365890 | 0.866440 | 2.847877e-65 | -8.615850e-47 |
| Msa1086590 | Msa1365900 | 0.810187 | 1.305818e-50 | -8.615850e-47 |
| Msa1086590 | Msa1365950 | 0.808167 | 3.538333e-50 | -8.615850e-47 |
| Msa1086590 | Msa1365960 | 0.886053 | 4.779580e-72 | -8.615850e-47 |
| Msa1086590 | Msa1365970 | 0.812848 | 3.447598e-51 | -8.615850e-47 |
| Msa1086590 | Msa1366080 | 0.860384 | 2.145080e-63 | -8.615850e-47 |
| Msa1086590 | Msa1366090 | 0.802679 | 5.004027e-49 | -8.615850e-47 |
| Msa1086590 | Msa1368230 | 0.876320 | 1.533462e-68 | -8.615850e-47 |
| Msa1086590 | Msa1380600 | 0.805171 | 1.518054e-49 | -8.615850e-47 |
| Msa1086590 | Msa1385410 | 0.870542 | 1.348738e-66 | -8.615850e-47 |
| Msa1086590 | Msa1385420 | 0.842490 | 2.504638e-58 | -8.615850e-47 |
| Msa1086590 | Msa1391090 | 0.803111 | 4.074296e-49 | -8.615850e-47 |
| Msa1086590 | Msa1391100 | 0.886981 | 2.130304e-72 | -8.615850e-47 |
| Msa1086590 | Msa1391160 | 0.870946 | 9.933041e-67 | -8.615850e-47 |
| Msa1086590 | Msa1391170 | 0.817716 | 2.855201e-52 | -8.615850e-47 |
| Msa1086590 | Msa1391220 | 0.844783 | 6.104206e-59 | -8.615850e-47 |
| Msa1086590 | Msa1391230 | 0.886683 | 2.763990e-72 | -8.615850e-47 |
| Msa1086590 | Msa1391240 | 0.808173 | 3.527865e-50 | -8.615850e-47 |
| Msa1086590 | Msa1394040 | 0.802777 | 4.775889e-49 | -8.615850e-47 |
| Msa1086590 | Msa1460120 | 0.832135 | 1.123782e-55 | -8.615850e-47 |
| Msa1086590 | Msa1460130 | 0.824721 | 6.921746e-54 | -8.615850e-47 |
| Msa0263770 | Msa1086590 | 0.840920 | 6.500522e-58 | -8.615850e-47 |
| Msa0268250 | Msa1086590 | 0.817776 | 2.767363e-52 | -8.615850e-47 |
| Msa0268260 | Msa1086590 | 0.886686 | 2.756165e-72 | -8.615850e-47 |
| Msa0268270 | Msa1086590 | 0.829685 | 4.481714e-55 | -8.615850e-47 |
| Msa0268300 | Msa1086590 | 0.848499 | 5.896875e-60 | -8.615850e-47 |
| Msa0268310 | Msa1086590 | 0.845848 | 3.143835e-59 | -8.615850e-47 |
| Msa0268400 | Msa1086590 | 0.809110 | 2.225036e-50 | -8.615850e-47 |
| Msa0268560 | Msa1086590 | 0.802778 | 4.774047e-49 | -8.615850e-47 |
| Msa0268580 | Msa1086590 | 0.800574 | 1.351903e-48 | -8.615850e-47 |
| Msa0268950 | Msa1086590 | 0.801265 | 9.770859e-49 | -8.615850e-47 |
| Msa0269130 | Msa1086590 | 0.821903 | 3.151439e-53 | -8.615850e-47 |
| Msa0269140 | Msa1086590 | 0.885249 | 9.572230e-72 | -8.615850e-47 |
| Msa0269150 | Msa1086590 | 0.824208 | 9.141188e-54 | -8.615850e-47 |
| Msa0582640 | Msa1086590 | 0.803268 | 3.780262e-49 | -8.615850e-47 |
| Msa0582660 | Msa1086590 | 0.809031 | 2.313563e-50 | -8.615850e-47 |
| Msa0582760 | Msa1086590 | 0.800738 | 1.251676e-48 | -8.615850e-47 |
| Msa0582780 | Msa1086590 | 0.800989 | 1.112449e-48 | -8.615850e-47 |
| Msa0582930 | Msa1086590 | 0.805201 | 1.496783e-49 | -8.615850e-47 |
| Msa0591290 | Msa1086590 | 0.833629 | 4.778586e-56 | -8.615850e-47 |
| Msa0591310 | Msa1086590 | 0.818260 | 2.151284e-52 | -8.615850e-47 |
| Msa0591350 | Msa1086590 | 0.834952 | 2.225219e-56 | -8.615850e-47 |
| Msa0591360 | Msa1086590 | 0.809130 | 2.203082e-50 | -8.615850e-47 |
| Msa0867680 | Msa1086590 | 0.846018 | 2.826120e-59 | -8.615850e-47 |
| Msa0867690 | Msa1086590 | 0.804343 | 2.260399e-49 | -8.615850e-47 |
| Msa0876520 | Msa1086590 | 0.800534 | 1.377454e-48 | -8.615850e-47 |
| Msa0908220 | Msa1086590 | 0.814287 | 1.663424e-51 | -8.615850e-47 |
| Msa0908230 | Msa1086590 | 0.888504 | 5.568489e-73 | -8.615850e-47 |
| Msa0908310 | Msa1086590 | 0.868792 | 5.016113e-66 | -8.615850e-47 |
| Msa0908320 | Msa1086590 | 0.835722 | 1.422386e-56 | -8.615850e-47 |
| Msa0908370 | Msa1086590 | 0.865070 | 7.706453e-65 | -8.615850e-47 |
| Msa0908430 | Msa1086590 | 0.808893 | 2.476091e-50 | -8.615850e-47 |
| Msa0908440 | Msa1086590 | 0.884557 | 1.732689e-71 | -8.615850e-47 |
| Msa0908450 | Msa1086590 | 0.814421 | 1.553915e-51 | -8.615850e-47 |
| Msa0908530 | Msa1086590 | 0.863915 | 1.769887e-64 | -8.615850e-47 |
| Msa0908540 | Msa1086590 | 0.822112 | 2.820273e-53 | -8.615850e-47 |
| Msa0908590 | Msa1086590 | 0.810596 | 1.065636e-50 | -8.615850e-47 |
| Msa0908600 | Msa1086590 | 0.899779 | 1.412876e-77 | -8.615850e-47 |
| Msa0908650 | Msa1086590 | 0.807437 | 5.057140e-50 | -8.615850e-47 |
| Msa0908660 | Msa1086590 | 0.901188 | 3.447229e-78 | -8.615850e-47 |
| Msa0908670 | Msa1086590 | 0.832623 | 8.505365e-56 | -8.615850e-47 |
| Msa0908720 | Msa1086590 | 0.854206 | 1.436701e-61 | -8.615850e-47 |
| Msa0908730 | Msa1086590 | 0.830194 | 3.368341e-55 | -8.615850e-47 |
| Msa0924890 | Msa1086590 | 0.803619 | 3.197190e-49 | -8.615850e-47 |
| Msa0924930 | Msa1086590 | 0.890472 | 9.550916e-74 | -8.615850e-47 |
| Msa0924940 | Msa1086590 | 0.810829 | 9.488304e-51 | -8.615850e-47 |
| Msa0925100 | Msa1086590 | 0.835596 | 1.530305e-56 | -8.615850e-47 |
| Msa0925110 | Msa1086590 | 0.817422 | 3.325505e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086590 | MtrunA17_CPg0492431 | 97.015 | 67 | 2 | 0 | 141 | 207 | 1 | 67 | 7.24e-38 | 132 |
| Msa1086590 | MtrunA17_Chr3g0090851 | 97.015 | 67 | 2 | 0 | 141 | 207 | 1 | 67 | 7.24e-38 | 132 |
| Msa1086590 | MtrunA17_Chr4g0016091 | 97.015 | 67 | 2 | 0 | 141 | 207 | 1 | 67 | 7.24e-38 | 132 |
| Msa1086590 | MtrunA17_CPg0492421 | 59.223 | 103 | 32 | 4 | 27 | 120 | 50 | 151 | 4.77e-29 | 106 |
| Msa1086590 | MtrunA17_Chr4g0016101 | 59.223 | 103 | 32 | 4 | 27 | 120 | 50 | 151 | 4.77e-29 | 106 |
| Msa1086590 | MtrunA17_Chr3g0090841 | 59.223 | 103 | 32 | 4 | 27 | 120 | 50 | 151 | 4.77e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086590 | ATCG00900.1 | 65.347 | 101 | 27 | 3 | 27 | 120 | 50 | 149 | 9.59e-36 | 123 |
| Msa1086590 | ATCG01240.1 | 65.347 | 101 | 27 | 3 | 27 | 120 | 50 | 149 | 9.59e-36 | 123 |
Find 30 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCGTGACATGAGCGTAAA+AGG | 0.177996 | 7_2:-87461635 | None:intergenic |
| ACTAATCGATTACGATAAAT+TGG | 0.238141 | 7_2:-87461692 | None:intergenic |
| CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | 7_2:+87461897 | Msa1086590:CDS |
| AAAACGTCCAGGTCGAAATA+TGG | 0.317789 | 7_2:+87461971 | Msa1086590:CDS |
| CAAATTAAGTTCCGAATTAG+TGG | 0.342047 | 7_2:+87461998 | Msa1086590:CDS |
| TTTGGCAGCATCCACTAATT+CGG | 0.375526 | 7_2:-87462009 | None:intergenic |
| ACGTATTGCTTGACGTAAAA+CGG | 0.405511 | 7_2:-87461823 | None:intergenic |
| GCTTGACGTAAAACGGATAG+TGG | 0.418362 | 7_2:-87461816 | None:intergenic |
| GTAAAAGCAAGACGCGTAAA+CGG | 0.427761 | 7_2:+87461867 | Msa1086590:CDS |
| GTATGGCATCGCCATTCCTT+TGG | 0.449289 | 7_2:-87462027 | None:intergenic |
| TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | 7_2:-87461906 | None:intergenic |
| ATGGCGATGCCATACGCAAA+AGG | 0.523996 | 7_2:+87462035 | Msa1086590:CDS |
| GAAAAGCACTTGCCATTCGT+TGG | 0.526859 | 7_2:+87461931 | Msa1086590:CDS |
| GGCGCATCCCGAAAACGTCC+AGG | 0.540732 | 7_2:+87461960 | Msa1086590:intron |
| TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | 7_2:-87461907 | None:intergenic |
| GCCGTGACATGAGCGTAAAA+GGG | 0.558201 | 7_2:-87461634 | None:intergenic |
| ATCGAAAAGAAGCAAATGAA+AGG | 0.561694 | 7_2:-87462397 | None:intergenic |
| AAAGGAAGAGACTCATAGAA+TGG | 0.565489 | 7_2:+87462053 | Msa1086590:CDS |
| TCATGGGTTCTTCTCTCCAT+CGG | 0.567612 | 7_2:-87462566 | None:intergenic |
| TAACGGCGCTGTTGTTCCGA+TGG | 0.571426 | 7_2:+87462550 | Msa1086590:CDS |
| AGTGGATGCTGCCAAAGGAA+TGG | 0.579178 | 7_2:+87462016 | Msa1086590:CDS |
| AGAGACTCATAGAATGGCAG+AGG | 0.593635 | 7_2:+87462059 | Msa1086590:CDS |
| TTGAAAGCCATATTTCGACC+TGG | 0.605724 | 7_2:-87461978 | None:intergenic |
| TGCGCCTAATAACCAACGAA+TGG | 0.620213 | 7_2:-87461943 | None:intergenic |
| GAATTAGTGGATGCTGCCAA+AGG | 0.621520 | 7_2:+87462011 | Msa1086590:CDS |
| TCGATTACGATAAATTGGAT+CGG | 0.627987 | 7_2:-87461687 | None:intergenic |
| AAGTTTAGTAATGAGCATAA+CGG | 0.644237 | 7_2:+87462533 | Msa1086590:CDS |
| TTTACGCTCATGTCACGGCG+AGG | 0.672550 | 7_2:+87461638 | Msa1086590:CDS |
| TTTACGTCAAGCAATACGTG+GGG | 0.715577 | 7_2:+87461827 | Msa1086590:CDS |
| GTTGAAATAGGATCCACACA+AGG | 0.731975 | 7_2:+87461909 | Msa1086590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAGAGGAATATT+TGG | + | chr7_2:87462279-87462298 | Msa1086590:intron | 15.0% |
| !! | AATAAATAAAGAGGAATATT+TGG | + | chr7_2:87462279-87462298 | Msa1086590:intron | 15.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | + | chr7_2:87462177-87462196 | Msa1086590:intron | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | + | chr7_2:87462270-87462289 | Msa1086590:intron | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | + | chr7_2:87462290-87462309 | Msa1086590:intron | 20.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | + | chr7_2:87462177-87462196 | Msa1086590:intron | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | + | chr7_2:87462270-87462289 | Msa1086590:intron | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | + | chr7_2:87462290-87462309 | Msa1086590:intron | 20.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | - | chr7_2:87461695-87461714 | None:intergenic | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | - | chr7_2:87461732-87461751 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | - | chr7_2:87462163-87462182 | None:intergenic | 25.0% |
| ! | GAAGAATTAGACCAAAAATT+AGG | - | chr7_2:87462449-87462468 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | + | chr7_2:87462533-87462552 | Msa1086590:CDS | 25.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | - | chr7_2:87461695-87461714 | None:intergenic | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | - | chr7_2:87461732-87461751 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | - | chr7_2:87462163-87462182 | None:intergenic | 25.0% |
| ! | GAAGAATTAGACCAAAAATT+AGG | - | chr7_2:87462449-87462468 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | + | chr7_2:87462533-87462552 | Msa1086590:CDS | 25.0% |
| ! | ATAAATTGGATCGGATTTTG+CGG | - | chr7_2:87461681-87461700 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | - | chr7_2:87461690-87461709 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | + | chr7_2:87461724-87461743 | Msa1086590:intron | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | + | chr7_2:87461738-87461757 | Msa1086590:intron | 30.0% | |
| ATTATCTATCGAGCTATGAA+AGG | + | chr7_2:87461769-87461788 | Msa1086590:intron | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | - | chr7_2:87461859-87461878 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | + | chr7_2:87461998-87462017 | Msa1086590:CDS | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | + | chr7_2:87462135-87462154 | Msa1086590:intron | 30.0% | |
| TATGGATCCATACATAACAT+AGG | - | chr7_2:87462145-87462164 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | + | chr7_2:87462151-87462170 | Msa1086590:intron | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | - | chr7_2:87462400-87462419 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | + | chr7_2:87462399-87462418 | Msa1086590:CDS | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | + | chr7_2:87462416-87462435 | Msa1086590:CDS | 30.0% |
| CCAAAAATTAGGATCAATTC+CGG | - | chr7_2:87462438-87462457 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | - | chr7_2:87462490-87462509 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | + | chr7_2:87462490-87462509 | Msa1086590:CDS | 30.0% | |
| ! | ATAAATTGGATCGGATTTTG+CGG | - | chr7_2:87461681-87461700 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | - | chr7_2:87461690-87461709 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | + | chr7_2:87461724-87461743 | Msa1086590:intron | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | + | chr7_2:87461738-87461757 | Msa1086590:intron | 30.0% | |
| ATTATCTATCGAGCTATGAA+AGG | + | chr7_2:87461769-87461788 | Msa1086590:intron | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | - | chr7_2:87461859-87461878 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | + | chr7_2:87461998-87462017 | Msa1086590:CDS | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | + | chr7_2:87462135-87462154 | Msa1086590:intron | 30.0% | |
| TATGGATCCATACATAACAT+AGG | - | chr7_2:87462145-87462164 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | + | chr7_2:87462151-87462170 | Msa1086590:intron | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | - | chr7_2:87462400-87462419 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | + | chr7_2:87462399-87462418 | Msa1086590:CDS | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | + | chr7_2:87462416-87462435 | Msa1086590:CDS | 30.0% |
| CCAAAAATTAGGATCAATTC+CGG | - | chr7_2:87462438-87462457 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | - | chr7_2:87462490-87462509 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | + | chr7_2:87462490-87462509 | Msa1086590:CDS | 30.0% | |
| ACGTATTGCTTGACGTAAAA+CGG | - | chr7_2:87461826-87461845 | None:intergenic | 35.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | + | chr7_2:87461826-87461845 | Msa1086590:CDS | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | - | chr7_2:87461858-87461877 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | - | chr7_2:87461910-87461929 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | + | chr7_2:87462053-87462072 | Msa1086590:CDS | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | + | chr7_2:87462100-87462119 | Msa1086590:intron | 35.0% |
| CGAAGACGAAATAGAAATGA+TGG | + | chr7_2:87462224-87462243 | Msa1086590:intron | 35.0% | |
| ! | CCGGAATTGATCCTAATTTT+TGG | + | chr7_2:87462435-87462454 | Msa1086590:CDS | 35.0% |
| ACGTATTGCTTGACGTAAAA+CGG | - | chr7_2:87461826-87461845 | None:intergenic | 35.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | + | chr7_2:87461826-87461845 | Msa1086590:CDS | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | - | chr7_2:87461858-87461877 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | - | chr7_2:87461910-87461929 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | + | chr7_2:87462053-87462072 | Msa1086590:CDS | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | + | chr7_2:87462100-87462119 | Msa1086590:intron | 35.0% |
| CGAAGACGAAATAGAAATGA+TGG | + | chr7_2:87462224-87462243 | Msa1086590:intron | 35.0% | |
| ! | CCGGAATTGATCCTAATTTT+TGG | + | chr7_2:87462435-87462454 | Msa1086590:CDS | 35.0% |
| ! | GTTTTACGTCAAGCAATACG+TGG | + | chr7_2:87461825-87461844 | Msa1086590:CDS | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | + | chr7_2:87461827-87461846 | Msa1086590:CDS | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | + | chr7_2:87461867-87461886 | Msa1086590:CDS | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | + | chr7_2:87461897-87461916 | Msa1086590:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | - | chr7_2:87461909-87461928 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | + | chr7_2:87461909-87461928 | Msa1086590:CDS | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | + | chr7_2:87461939-87461958 | Msa1086590:intron | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | - | chr7_2:87461971-87461990 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | + | chr7_2:87461971-87461990 | Msa1086590:CDS | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | - | chr7_2:87461981-87462000 | None:intergenic | 40.0% | |
| TTTGGCAGCATCCACTAATT+CGG | - | chr7_2:87462012-87462031 | None:intergenic | 40.0% | |
| GTGTATATAGATCCTGCTCA+TGG | - | chr7_2:87462115-87462134 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | + | chr7_2:87462243-87462262 | Msa1086590:intron | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | + | chr7_2:87462244-87462263 | Msa1086590:intron | 40.0% |
| ! | GTTTTACGTCAAGCAATACG+TGG | + | chr7_2:87461825-87461844 | Msa1086590:CDS | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | + | chr7_2:87461827-87461846 | Msa1086590:CDS | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | + | chr7_2:87461867-87461886 | Msa1086590:CDS | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | + | chr7_2:87461897-87461916 | Msa1086590:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | - | chr7_2:87461909-87461928 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | + | chr7_2:87461909-87461928 | Msa1086590:CDS | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | + | chr7_2:87461939-87461958 | Msa1086590:intron | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | - | chr7_2:87461971-87461990 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | + | chr7_2:87461971-87461990 | Msa1086590:CDS | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | - | chr7_2:87461981-87462000 | None:intergenic | 40.0% | |
| TTTGGCAGCATCCACTAATT+CGG | - | chr7_2:87462012-87462031 | None:intergenic | 40.0% | |
| GTGTATATAGATCCTGCTCA+TGG | - | chr7_2:87462115-87462134 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | + | chr7_2:87462243-87462262 | Msa1086590:intron | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | + | chr7_2:87462244-87462263 | Msa1086590:intron | 40.0% |
| ! | TCCCTTTTACGCTCATGTCA+CGG | + | chr7_2:87461633-87461652 | Msa1086590:CDS | 45.0% |
| GCTTGACGTAAAACGGATAG+TGG | - | chr7_2:87461819-87461838 | None:intergenic | 45.0% | |
| !! | GAAAAGCACTTGCCATTCGT+TGG | + | chr7_2:87461931-87461950 | Msa1086590:CDS | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | - | chr7_2:87461946-87461965 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | - | chr7_2:87461970-87461989 | None:intergenic | 45.0% |
| ! | GAATTAGTGGATGCTGCCAA+AGG | + | chr7_2:87462011-87462030 | Msa1086590:CDS | 45.0% |
| ! | GAGTCTCTTCCTTTTGCGTA+TGG | - | chr7_2:87462047-87462066 | None:intergenic | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | + | chr7_2:87462059-87462078 | Msa1086590:CDS | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | + | chr7_2:87462245-87462264 | Msa1086590:intron | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | - | chr7_2:87462569-87462588 | None:intergenic | 45.0% | |
| ! | TCCCTTTTACGCTCATGTCA+CGG | + | chr7_2:87461633-87461652 | Msa1086590:CDS | 45.0% |
| GCTTGACGTAAAACGGATAG+TGG | - | chr7_2:87461819-87461838 | None:intergenic | 45.0% | |
| !! | GAAAAGCACTTGCCATTCGT+TGG | + | chr7_2:87461931-87461950 | Msa1086590:CDS | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | - | chr7_2:87461946-87461965 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | - | chr7_2:87461970-87461989 | None:intergenic | 45.0% |
| ! | GAATTAGTGGATGCTGCCAA+AGG | + | chr7_2:87462011-87462030 | Msa1086590:CDS | 45.0% |
| ! | GAGTCTCTTCCTTTTGCGTA+TGG | - | chr7_2:87462047-87462066 | None:intergenic | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | + | chr7_2:87462059-87462078 | Msa1086590:CDS | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | + | chr7_2:87462245-87462264 | Msa1086590:intron | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | - | chr7_2:87462569-87462588 | None:intergenic | 45.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | - | chr7_2:87461637-87461656 | None:intergenic | 50.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | - | chr7_2:87461925-87461944 | None:intergenic | 50.0% |
| AGTGGATGCTGCCAAAGGAA+TGG | + | chr7_2:87462016-87462035 | Msa1086590:CDS | 50.0% | |
| GTATGGCATCGCCATTCCTT+TGG | - | chr7_2:87462030-87462049 | None:intergenic | 50.0% | |
| ATGGCGATGCCATACGCAAA+AGG | + | chr7_2:87462035-87462054 | Msa1086590:CDS | 50.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | - | chr7_2:87461637-87461656 | None:intergenic | 50.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | - | chr7_2:87461925-87461944 | None:intergenic | 50.0% |
| AGTGGATGCTGCCAAAGGAA+TGG | + | chr7_2:87462016-87462035 | Msa1086590:CDS | 50.0% | |
| GTATGGCATCGCCATTCCTT+TGG | - | chr7_2:87462030-87462049 | None:intergenic | 50.0% | |
| ATGGCGATGCCATACGCAAA+AGG | + | chr7_2:87462035-87462054 | Msa1086590:CDS | 50.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | - | chr7_2:87461638-87461657 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | + | chr7_2:87461638-87461657 | Msa1086590:CDS | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | + | chr7_2:87462550-87462569 | Msa1086590:CDS | 55.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | - | chr7_2:87461638-87461657 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | + | chr7_2:87461638-87461657 | Msa1086590:CDS | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | + | chr7_2:87462550-87462569 | Msa1086590:CDS | 55.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | + | chr7_2:87461960-87461979 | Msa1086590:intron | 65.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | + | chr7_2:87461960-87461979 | Msa1086590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 87461625 | 87462590 | 87461625 | ID=Msa1086590;Name=Msa1086590 |
| chr7_2 | mRNA | 87461625 | 87462590 | 87461625 | ID=Msa1086590-mRNA-1;Parent=Msa1086590;Name=Msa1086590-mRNA-1;_AED=0.30;_eAED=0.39;_QI=0|0|0|1|0|0|4|0|207 |
| chr7_2 | exon | 87461625 | 87461701 | 87461625 | ID=Msa1086590-mRNA-1:exon:23827;Parent=Msa1086590-mRNA-1 |
| chr7_2 | exon | 87461791 | 87461952 | 87461791 | ID=Msa1086590-mRNA-1:exon:23828;Parent=Msa1086590-mRNA-1 |
| chr7_2 | exon | 87461961 | 87462105 | 87461961 | ID=Msa1086590-mRNA-1:exon:23829;Parent=Msa1086590-mRNA-1 |
| chr7_2 | exon | 87462354 | 87462590 | 87462354 | ID=Msa1086590-mRNA-1:exon:23830;Parent=Msa1086590-mRNA-1 |
| chr7_2 | CDS | 87461625 | 87461701 | 87461625 | ID=Msa1086590-mRNA-1:cds;Parent=Msa1086590-mRNA-1 |
| chr7_2 | CDS | 87461791 | 87461952 | 87461791 | ID=Msa1086590-mRNA-1:cds;Parent=Msa1086590-mRNA-1 |
| chr7_2 | CDS | 87461961 | 87462105 | 87461961 | ID=Msa1086590-mRNA-1:cds;Parent=Msa1086590-mRNA-1 |
| chr7_2 | CDS | 87462354 | 87462590 | 87462354 | ID=Msa1086590-mRNA-1:cds;Parent=Msa1086590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
