Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908240 | AES69829.1 | 76.879 | 173 | 12 | 2 | 1 | 153 | 1 | 165 | 5.66e-78 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908240 | sp|A4GYN8|RR12B_POPTR | 88.073 | 109 | 13 | 0 | 52 | 160 | 27 | 135 | 7.99e-62 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126750 | Msa0908240 | 0.807725 | 4.392433e-50 | -8.615850e-47 |
| Msa0202640 | Msa0908240 | 0.835749 | 1.399971e-56 | -8.615850e-47 |
| Msa0405420 | Msa0908240 | 0.831726 | 1.417768e-55 | -8.615850e-47 |
| Msa0405430 | Msa0908240 | 0.861084 | 1.315467e-63 | -8.615850e-47 |
| Msa0405440 | Msa0908240 | 0.938287 | 8.626007e-99 | -8.615850e-47 |
| Msa0405510 | Msa0908240 | 0.817361 | 3.432687e-52 | -8.615850e-47 |
| Msa0405520 | Msa0908240 | 0.837782 | 4.243048e-57 | -8.615850e-47 |
| Msa0405530 | Msa0908240 | 0.940111 | 4.076730e-100 | -8.615850e-47 |
| Msa0263770 | Msa0908240 | 0.882545 | 9.520847e-71 | -8.615850e-47 |
| Msa0268190 | Msa0908240 | 0.816046 | 6.765725e-52 | -8.615850e-47 |
| Msa0268210 | Msa0908240 | 0.820257 | 7.548727e-53 | -8.615850e-47 |
| Msa0268250 | Msa0908240 | 0.827509 | 1.504064e-54 | -8.615850e-47 |
| Msa0268260 | Msa0908240 | 0.834368 | 3.120803e-56 | -8.615850e-47 |
| Msa0268270 | Msa0908240 | 0.939914 | 5.690977e-100 | -8.615850e-47 |
| Msa0268300 | Msa0908240 | 0.874065 | 9.031282e-68 | -8.615850e-47 |
| Msa0268310 | Msa0908240 | 0.831329 | 1.775910e-55 | -8.615850e-47 |
| Msa0268430 | Msa0908240 | 0.825814 | 3.818782e-54 | -8.615850e-47 |
| Msa0268450 | Msa0908240 | 0.814965 | 1.177799e-51 | -8.615850e-47 |
| Msa0268560 | Msa0908240 | 0.811569 | 6.556143e-51 | -8.615850e-47 |
| Msa0268570 | Msa0908240 | 0.830079 | 3.592976e-55 | -8.615850e-47 |
| Msa0268630 | Msa0908240 | 0.839641 | 1.403044e-57 | -8.615850e-47 |
| Msa0268670 | Msa0908240 | 0.811328 | 7.397656e-51 | -8.615850e-47 |
| Msa0268740 | Msa0908240 | 0.818678 | 1.728924e-52 | -8.615850e-47 |
| Msa0268750 | Msa0908240 | 0.839258 | 1.764074e-57 | -8.615850e-47 |
| Msa0268830 | Msa0908240 | 0.858344 | 8.785655e-63 | -8.615850e-47 |
| Msa0268860 | Msa0908240 | 0.816894 | 4.370500e-52 | -8.615850e-47 |
| Msa0268880 | Msa0908240 | 0.806212 | 9.177898e-50 | -8.615850e-47 |
| Msa0268950 | Msa0908240 | 0.808219 | 3.447990e-50 | -8.615850e-47 |
| Msa0268960 | Msa0908240 | 0.853116 | 2.955430e-61 | -8.615850e-47 |
| Msa0269040 | Msa0908240 | 0.858480 | 8.001272e-63 | -8.615850e-47 |
| Msa0269070 | Msa0908240 | 0.812854 | 3.438489e-51 | -8.615850e-47 |
| Msa0269140 | Msa0908240 | 0.860212 | 2.417782e-63 | -8.615850e-47 |
| Msa0269150 | Msa0908240 | 0.966837 | 1.860644e-126 | -8.615850e-47 |
| Msa0344180 | Msa0908240 | 0.802821 | 4.676717e-49 | -8.615850e-47 |
| Msa0344190 | Msa0908240 | 0.805028 | 1.626788e-49 | -8.615850e-47 |
| Msa0344310 | Msa0908240 | 0.836223 | 1.061170e-56 | -8.615850e-47 |
| Msa0484040 | Msa0908240 | 0.826000 | 3.447973e-54 | -8.615850e-47 |
| Msa0582510 | Msa0908240 | 0.845461 | 4.003653e-59 | -8.615850e-47 |
| Msa0582540 | Msa0908240 | 0.813192 | 2.899160e-51 | -8.615850e-47 |
| Msa0582640 | Msa0908240 | 0.813633 | 2.319182e-51 | -8.615850e-47 |
| Msa0582650 | Msa0908240 | 0.830313 | 3.151319e-55 | -8.615850e-47 |
| Msa0582690 | Msa0908240 | 0.850246 | 1.922601e-60 | -8.615850e-47 |
| Msa0582730 | Msa0908240 | 0.806027 | 1.004226e-49 | -8.615850e-47 |
| Msa0582760 | Msa0908240 | 0.818051 | 2.398653e-52 | -8.615850e-47 |
| Msa0582770 | Msa0908240 | 0.839647 | 1.398608e-57 | -8.615850e-47 |
| Msa0582810 | Msa0908240 | 0.847393 | 1.189996e-59 | -8.615850e-47 |
| Msa0582840 | Msa0908240 | 0.810164 | 1.320999e-50 | -8.615850e-47 |
| Msa0582910 | Msa0908240 | 0.813698 | 2.243847e-51 | -8.615850e-47 |
| Msa0582920 | Msa0908240 | 0.845020 | 5.267433e-59 | -8.615850e-47 |
| Msa0591290 | Msa0908240 | 0.811798 | 5.846434e-51 | -8.615850e-47 |
| Msa0591310 | Msa0908240 | 0.839804 | 1.272402e-57 | -8.615850e-47 |
| Msa0591350 | Msa0908240 | 0.905504 | 4.004720e-80 | -8.615850e-47 |
| Msa0591360 | Msa0908240 | 0.814952 | 1.185103e-51 | -8.615850e-47 |
| Msa0591380 | Msa0908240 | 0.826023 | 3.404856e-54 | -8.615850e-47 |
| Msa0867680 | Msa0908240 | 0.881026 | 3.379148e-70 | -8.615850e-47 |
| Msa0867690 | Msa0908240 | 0.839532 | 1.498256e-57 | -8.615850e-47 |
| Msa0876520 | Msa0908240 | 0.841652 | 4.173809e-58 | -8.615850e-47 |
| Msa0908220 | Msa0908240 | 0.836732 | 7.875871e-57 | -8.615850e-47 |
| Msa0908230 | Msa0908240 | 0.875388 | 3.205869e-68 | -8.615850e-47 |
| Msa0908240 | Msa0908310 | 0.901296 | 3.091835e-78 | -8.615850e-47 |
| Msa0908240 | Msa0908320 | 0.831274 | 1.831776e-55 | -8.615850e-47 |
| Msa0908240 | Msa0908370 | 0.902931 | 5.848724e-79 | -8.615850e-47 |
| Msa0908240 | Msa0908380 | 0.836843 | 7.377145e-57 | -8.615850e-47 |
| Msa0908240 | Msa0908430 | 0.847848 | 8.919855e-60 | -8.615850e-47 |
| Msa0908240 | Msa0908440 | 0.874097 | 8.812338e-68 | -8.615850e-47 |
| Msa0908240 | Msa0908450 | 0.964870 | 7.105078e-124 | -8.615850e-47 |
| Msa0908240 | Msa0908480 | 0.864895 | 8.748012e-65 | -8.615850e-47 |
| Msa0908240 | Msa0908530 | 0.913517 | 5.615191e-84 | -8.615850e-47 |
| Msa0908240 | Msa0908540 | 0.835520 | 1.599955e-56 | -8.615850e-47 |
| Msa0908240 | Msa0908590 | 0.818536 | 1.862295e-52 | -8.615850e-47 |
| Msa0908240 | Msa0908600 | 0.831564 | 1.554107e-55 | -8.615850e-47 |
| Msa0908240 | Msa0908610 | 0.950525 | 1.375024e-108 | -8.615850e-47 |
| Msa0908240 | Msa0908650 | 0.829566 | 4.792419e-55 | -8.615850e-47 |
| Msa0908240 | Msa0908660 | 0.835939 | 1.253013e-56 | -8.615850e-47 |
| Msa0908240 | Msa0908670 | 0.947708 | 3.975958e-106 | -8.615850e-47 |
| Msa0908240 | Msa0908720 | 0.909188 | 7.504474e-82 | -8.615850e-47 |
| Msa0908240 | Msa0908730 | 0.816390 | 5.667200e-52 | -8.615850e-47 |
| Msa0908240 | Msa0911190 | 0.922181 | 1.372968e-88 | -8.615850e-47 |
| Msa0908240 | Msa0911200 | 0.848143 | 7.392962e-60 | -8.615850e-47 |
| Msa0908240 | Msa0911230 | 0.890277 | 1.139122e-73 | -8.615850e-47 |
| Msa0908240 | Msa0924830 | 0.836204 | 1.073477e-56 | -8.615850e-47 |
| Msa0908240 | Msa0924880 | 0.840344 | 9.198717e-58 | -8.615850e-47 |
| Msa0908240 | Msa0924920 | 0.879618 | 1.075839e-69 | -8.615850e-47 |
| Msa0908240 | Msa0924930 | 0.843057 | 1.770385e-58 | -8.615850e-47 |
| Msa0908240 | Msa0924940 | 0.849229 | 3.697467e-60 | -8.615850e-47 |
| Msa0908240 | Msa0925100 | 0.922123 | 1.479172e-88 | -8.615850e-47 |
| Msa0908240 | Msa0925110 | 0.860825 | 1.576672e-63 | -8.615850e-47 |
| Msa0908240 | Msa0931070 | 0.829307 | 5.539335e-55 | -8.615850e-47 |
| Msa0908240 | Msa0931110 | 0.813896 | 2.029204e-51 | -8.615850e-47 |
| Msa0908240 | Msa0931130 | 0.835009 | 2.153071e-56 | -8.615850e-47 |
| Msa0908240 | Msa0931160 | 0.804357 | 2.245956e-49 | -8.615850e-47 |
| Msa0908240 | Msa0931220 | 0.810347 | 1.206001e-50 | -8.615850e-47 |
| Msa0908240 | Msa0931230 | 0.819341 | 1.221925e-52 | -8.615850e-47 |
| Msa0908240 | Msa0931260 | 0.850402 | 1.737786e-60 | -8.615850e-47 |
| Msa0908240 | Msa0983630 | 0.880348 | 5.912252e-70 | -8.615850e-47 |
| Msa0908240 | Msa0983640 | 0.834996 | 2.169412e-56 | -8.615850e-47 |
| Msa0908240 | Msa1022050 | 0.897759 | 1.029793e-76 | -8.615850e-47 |
| Msa0908240 | Msa1022060 | 0.836300 | 1.014291e-56 | -8.615850e-47 |
| Msa0908240 | Msa1064410 | 0.856775 | 2.560216e-62 | -8.615850e-47 |
| Msa0908240 | Msa1086080 | 0.804211 | 2.408144e-49 | -8.615850e-47 |
| Msa0908240 | Msa1086090 | 0.837722 | 4.395887e-57 | -8.615850e-47 |
| Msa0908240 | Msa1086140 | 0.830840 | 2.341205e-55 | -8.615850e-47 |
| Msa0908240 | Msa1086190 | 0.822683 | 2.077839e-53 | -8.615850e-47 |
| Msa0908240 | Msa1086200 | 0.850164 | 2.027361e-60 | -8.615850e-47 |
| Msa0908240 | Msa1086270 | 0.818124 | 2.308657e-52 | -8.615850e-47 |
| Msa0908240 | Msa1086300 | 0.806876 | 6.646652e-50 | -8.615850e-47 |
| Msa0908240 | Msa1086320 | 0.812285 | 4.579076e-51 | -8.615850e-47 |
| Msa0908240 | Msa1086510 | 0.805210 | 1.490120e-49 | -8.615850e-47 |
| Msa0908240 | Msa1086550 | 0.816977 | 4.187343e-52 | -8.615850e-47 |
| Msa0908240 | Msa1086600 | 0.851086 | 1.116005e-60 | -8.615850e-47 |
| Msa0908240 | Msa1086670 | 0.801913 | 7.193008e-49 | -8.615850e-47 |
| Msa0908240 | Msa1086720 | 0.838431 | 2.887870e-57 | -8.615850e-47 |
| Msa0908240 | Msa1086730 | 0.864971 | 8.277898e-65 | -8.615850e-47 |
| Msa0908240 | Msa1086740 | 0.952755 | 1.219721e-110 | -8.615850e-47 |
| Msa0908240 | Msa1086790 | 0.911019 | 9.756092e-83 | -8.615850e-47 |
| Msa0908240 | Msa1086800 | 0.851358 | 9.346926e-61 | -8.615850e-47 |
| Msa0908240 | Msa1086860 | 0.804969 | 1.673383e-49 | -8.615850e-47 |
| Msa0908240 | Msa1086890 | 0.809415 | 1.914212e-50 | -8.615850e-47 |
| Msa0908240 | Msa1086900 | 0.837611 | 4.693374e-57 | -8.615850e-47 |
| Msa0908240 | Msa1086960 | 0.914808 | 1.241118e-84 | -8.615850e-47 |
| Msa0908240 | Msa1086970 | 0.826421 | 2.738642e-54 | -8.615850e-47 |
| Msa0908240 | Msa1087030 | 0.831928 | 1.263585e-55 | -8.615850e-47 |
| Msa0908240 | Msa1087040 | 0.854240 | 1.404391e-61 | -8.615850e-47 |
| Msa0908240 | Msa1087050 | 0.939843 | 6.415487e-100 | -8.615850e-47 |
| Msa0908240 | Msa1087110 | 0.927631 | 8.983018e-92 | -8.615850e-47 |
| Msa0908240 | Msa1087120 | 0.826226 | 3.047329e-54 | -8.615850e-47 |
| Msa0908240 | Msa1091700 | 0.802582 | 5.240438e-49 | -8.615850e-47 |
| Msa0908240 | Msa1143120 | 0.841228 | 5.395028e-58 | -8.615850e-47 |
| Msa0908240 | Msa1143170 | 0.829393 | 5.278716e-55 | -8.615850e-47 |
| Msa0908240 | Msa1305090 | 0.824576 | 7.491343e-54 | -8.615850e-47 |
| Msa0908240 | Msa1342040 | 0.811523 | 6.707945e-51 | -8.615850e-47 |
| Msa0908240 | Msa1354420 | 0.905844 | 2.792278e-80 | -8.615850e-47 |
| Msa0908240 | Msa1354430 | 0.838837 | 2.268493e-57 | -8.615850e-47 |
| Msa0908240 | Msa1354480 | 0.830211 | 3.336105e-55 | -8.615850e-47 |
| Msa0908240 | Msa1354490 | 0.864864 | 8.942450e-65 | -8.615850e-47 |
| Msa0908240 | Msa1354500 | 0.960305 | 2.084242e-118 | -8.615850e-47 |
| Msa0908240 | Msa1354550 | 0.903438 | 3.468816e-79 | -8.615850e-47 |
| Msa0908240 | Msa1354560 | 0.838408 | 2.926825e-57 | -8.615850e-47 |
| Msa0908240 | Msa1354610 | 0.855518 | 5.978801e-62 | -8.615850e-47 |
| Msa0908240 | Msa1354620 | 0.864131 | 1.516557e-64 | -8.615850e-47 |
| Msa0908240 | Msa1354630 | 0.957486 | 2.418004e-115 | -8.615850e-47 |
| Msa0908240 | Msa1354680 | 0.934449 | 3.970548e-96 | -8.615850e-47 |
| Msa0908240 | Msa1354690 | 0.869562 | 2.821075e-66 | -8.615850e-47 |
| Msa0908240 | Msa1354700 | 0.823158 | 1.610556e-53 | -8.615850e-47 |
| Msa0908240 | Msa1354740 | 0.846773 | 1.759112e-59 | -8.615850e-47 |
| Msa0908240 | Msa1354750 | 0.867980 | 9.170632e-66 | -8.615850e-47 |
| Msa0908240 | Msa1354760 | 0.955348 | 3.730773e-113 | -8.615850e-47 |
| Msa0908240 | Msa1354810 | 0.908771 | 1.187350e-81 | -8.615850e-47 |
| Msa0908240 | Msa1354820 | 0.835929 | 1.259965e-56 | -8.615850e-47 |
| Msa0908240 | Msa1354910 | 0.811342 | 7.345354e-51 | -8.615850e-47 |
| Msa0908240 | Msa1354920 | 0.840092 | 1.070744e-57 | -8.615850e-47 |
| Msa0908240 | Msa1354980 | 0.904773 | 8.644210e-80 | -8.615850e-47 |
| Msa0908240 | Msa1354990 | 0.846393 | 2.234293e-59 | -8.615850e-47 |
| Msa0908240 | Msa1355080 | 0.822552 | 2.228125e-53 | -8.615850e-47 |
| Msa0908240 | Msa1355090 | 0.834695 | 2.583508e-56 | -8.615850e-47 |
| Msa0908240 | Msa1365890 | 0.890363 | 1.054498e-73 | -8.615850e-47 |
| Msa0908240 | Msa1365900 | 0.821454 | 4.003811e-53 | -8.615850e-47 |
| Msa0908240 | Msa1365950 | 0.835561 | 1.562242e-56 | -8.615850e-47 |
| Msa0908240 | Msa1365960 | 0.818286 | 2.121937e-52 | -8.615850e-47 |
| Msa0908240 | Msa1365970 | 0.928772 | 1.797541e-92 | -8.615850e-47 |
| Msa0908240 | Msa1366080 | 0.891050 | 5.654161e-74 | -8.615850e-47 |
| Msa0908240 | Msa1366090 | 0.821532 | 3.840981e-53 | -8.615850e-47 |
| Msa0908240 | Msa1368230 | 0.849214 | 3.732888e-60 | -8.615850e-47 |
| Msa0908240 | Msa1368240 | 0.937615 | 2.595498e-98 | -8.615850e-47 |
| Msa0908240 | Msa1380610 | 0.806880 | 6.635758e-50 | -8.615850e-47 |
| Msa0908240 | Msa1385410 | 0.865571 | 5.360122e-65 | -8.615850e-47 |
| Msa0908240 | Msa1385420 | 0.819058 | 1.417364e-52 | -8.615850e-47 |
| Msa0908240 | Msa1391090 | 0.828130 | 1.066539e-54 | -8.615850e-47 |
| Msa0908240 | Msa1391100 | 0.853729 | 1.970577e-61 | -8.615850e-47 |
| Msa0908240 | Msa1391110 | 0.956307 | 4.019151e-114 | -8.615850e-47 |
| Msa0908240 | Msa1391160 | 0.848269 | 6.826942e-60 | -8.615850e-47 |
| Msa0908240 | Msa1391170 | 0.849115 | 3.977497e-60 | -8.615850e-47 |
| Msa0908240 | Msa1391220 | 0.837585 | 4.766317e-57 | -8.615850e-47 |
| Msa0908240 | Msa1391230 | 0.830648 | 2.608795e-55 | -8.615850e-47 |
| Msa0908240 | Msa1391240 | 0.948669 | 5.965388e-107 | -8.615850e-47 |
| Msa0908240 | Msa1394030 | 0.846385 | 2.245072e-59 | -8.615850e-47 |
| Msa0908240 | Msa1394040 | 0.822688 | 2.071522e-53 | -8.615850e-47 |
| Msa0908240 | Msa1394150 | 0.806925 | 6.490175e-50 | -8.615850e-47 |
| Msa0908240 | Msa1394160 | 0.837724 | 4.390882e-57 | -8.615850e-47 |
| Msa0908240 | Msa1394210 | 0.833790 | 4.355777e-56 | -8.615850e-47 |
| Msa0908240 | Msa1394250 | 0.801001 | 1.106421e-48 | -8.615850e-47 |
| Msa0908240 | Msa1460120 | 0.862187 | 6.053574e-64 | -8.615850e-47 |
| Msa0908240 | Msa1460130 | 0.858224 | 9.539015e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908240 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 73 | 160 | 6 | 93 | 3.12e-50 | 156 |
| Msa0908240 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 78 | 160 | 41 | 123 | 9.45e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908240 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 76 | 160 | 1 | 85 | 1.37e-55 | 169 |
| Msa0908240 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 76 | 160 | 1 | 85 | 1.37e-55 | 169 |
| Msa0908240 | AT2G07675.1 | 60.638 | 94 | 37 | 0 | 67 | 160 | 30 | 123 | 1.80e-34 | 117 |
| Msa0908240 | ATMG00980.1 | 60.638 | 94 | 37 | 0 | 67 | 160 | 30 | 123 | 1.80e-34 | 117 |
Find 39 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | 6_2:+9504238 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | 6_2:-9504271 | Msa0908240:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | 6_2:+9504389 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | 6_2:-9505234 | Msa0908240:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | 6_2:+9504299 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | 6_2:+9504469 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | 6_2:-9504270 | Msa0908240:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | 6_2:+9504272 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | 6_2:+9504399 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | 6_2:-9504373 | Msa0908240:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | 6_2:-9505440 | Msa0908240:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | 6_2:+9505565 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | 6_2:-9504445 | Msa0908240:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | 6_2:+9505242 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | 6_2:-9504412 | Msa0908240:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | 6_2:+9505591 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | 6_2:+9504300 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | 6_2:-9504299 | Msa0908240:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | 6_2:+9505577 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | 6_2:-9505633 | Msa0908240:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | 6_2:-9505620 | Msa0908240:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | 6_2:+9504459 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | 6_2:-9504372 | Msa0908240:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | 6_2:-9504533 | Msa0908240:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | 6_2:+9504444 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | 6_2:-9504418 | Msa0908240:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | 6_2:-9504325 | Msa0908240:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | 6_2:+9505592 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | 6_2:-9505226 | Msa0908240:CDS |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | 6_2:-9504371 | Msa0908240:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | 6_2:-9504286 | Msa0908240:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | 6_2:+9504400 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | 6_2:-9504307 | Msa0908240:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | 6_2:+9504429 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | 6_2:+9505252 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | 6_2:-9504269 | Msa0908240:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | 6_2:-9504349 | Msa0908240:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | 6_2:-9504370 | Msa0908240:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | 6_2:+9504331 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | chr6_2:9504395-9504414 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | chr6_2:9504396-9504415 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | chr6_2:9504399-9504418 | Msa0908240:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | chr6_2:9504395-9504414 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | chr6_2:9504396-9504415 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | chr6_2:9504399-9504418 | Msa0908240:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_2:9504836-9504855 | Msa0908240:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr6_2:9504836-9504855 | Msa0908240:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_2:9504577-9504596 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_2:9505197-9505216 | Msa0908240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | chr6_2:9505242-9505261 | Msa0908240:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | chr6_2:9504577-9504596 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr6_2:9505197-9505216 | Msa0908240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | chr6_2:9505242-9505261 | Msa0908240:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | chr6_2:9504354-9504373 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | chr6_2:9504355-9504374 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | chr6_2:9504475-9504494 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | chr6_2:9504476-9504495 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | chr6_2:9504477-9504496 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_2:9504578-9504597 | Msa0908240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_2:9504583-9504602 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_2:9504720-9504739 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_2:9504944-9504963 | Msa0908240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_2:9505020-9505039 | Msa0908240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_2:9505021-9505040 | Msa0908240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr6_2:9505088-9505107 | Msa0908240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_2:9505098-9505117 | Msa0908240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr6_2:9505161-9505180 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | chr6_2:9505243-9505262 | Msa0908240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr6_2:9505297-9505316 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr6_2:9505497-9505516 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | chr6_2:9504354-9504373 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | chr6_2:9504355-9504374 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | chr6_2:9504475-9504494 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | chr6_2:9504476-9504495 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | chr6_2:9504477-9504496 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | chr6_2:9504578-9504597 | Msa0908240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | chr6_2:9504583-9504602 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr6_2:9504720-9504739 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr6_2:9504944-9504963 | Msa0908240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr6_2:9505020-9505039 | Msa0908240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr6_2:9505021-9505040 | Msa0908240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr6_2:9505088-9505107 | Msa0908240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr6_2:9505098-9505117 | Msa0908240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr6_2:9505161-9505180 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | chr6_2:9505243-9505262 | Msa0908240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr6_2:9505297-9505316 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr6_2:9505497-9505516 | None:intergenic | 25.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | chr6_2:9504389-9504408 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | chr6_2:9504443-9504462 | Msa0908240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | chr6_2:9504520-9504539 | Msa0908240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr6_2:9505077-9505096 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr6_2:9505078-9505097 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr6_2:9505076-9505095 | Msa0908240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr6_2:9505093-9505112 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr6_2:9505091-9505110 | Msa0908240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_2:9505097-9505116 | Msa0908240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr6_2:9505487-9505506 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr6_2:9505511-9505530 | Msa0908240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr6_2:9505613-9505632 | Msa0908240:CDS | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | chr6_2:9504389-9504408 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | chr6_2:9504443-9504462 | Msa0908240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | chr6_2:9504520-9504539 | Msa0908240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr6_2:9505077-9505096 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr6_2:9505078-9505097 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr6_2:9505076-9505095 | Msa0908240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr6_2:9505093-9505112 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr6_2:9505091-9505110 | Msa0908240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr6_2:9505097-9505116 | Msa0908240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr6_2:9505487-9505506 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr6_2:9505511-9505530 | Msa0908240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr6_2:9505613-9505632 | Msa0908240:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | chr6_2:9504388-9504407 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | chr6_2:9504507-9504526 | Msa0908240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | chr6_2:9504513-9504532 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_2:9504611-9504630 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_2:9504875-9504894 | Msa0908240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr6_2:9504903-9504922 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr6_2:9505075-9505094 | Msa0908240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr6_2:9505299-9505318 | Msa0908240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_2:9505327-9505346 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_2:9505329-9505348 | Msa0908240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_2:9505397-9505416 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_2:9505407-9505426 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_2:9505408-9505427 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr6_2:9505465-9505484 | Msa0908240:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr6_2:9505486-9505505 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr6_2:9505510-9505529 | Msa0908240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr6_2:9505512-9505531 | Msa0908240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr6_2:9505614-9505633 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr6_2:9505612-9505631 | Msa0908240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr6_2:9505614-9505633 | Msa0908240:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | chr6_2:9504388-9504407 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | chr6_2:9504507-9504526 | Msa0908240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | chr6_2:9504513-9504532 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr6_2:9504611-9504630 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr6_2:9504875-9504894 | Msa0908240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr6_2:9504903-9504922 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr6_2:9505075-9505094 | Msa0908240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr6_2:9505299-9505318 | Msa0908240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr6_2:9505327-9505346 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr6_2:9505329-9505348 | Msa0908240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | chr6_2:9505397-9505416 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | chr6_2:9505407-9505426 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | chr6_2:9505408-9505427 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr6_2:9505465-9505484 | Msa0908240:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr6_2:9505486-9505505 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr6_2:9505510-9505529 | Msa0908240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr6_2:9505512-9505531 | Msa0908240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr6_2:9505614-9505633 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr6_2:9505612-9505631 | Msa0908240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr6_2:9505614-9505633 | Msa0908240:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | chr6_2:9504263-9504282 | Msa0908240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | chr6_2:9504294-9504313 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | chr6_2:9504309-9504328 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | chr6_2:9504314-9504333 | Msa0908240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | chr6_2:9504321-9504340 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | chr6_2:9504387-9504406 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | chr6_2:9504506-9504525 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_2:9504560-9504579 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_2:9504564-9504583 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_2:9504685-9504704 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_2:9504684-9504703 | Msa0908240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_2:9505033-9505052 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_2:9505054-9505073 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | chr6_2:9505247-9505266 | Msa0908240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_2:9505406-9505425 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_2:9505417-9505436 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_2:9505427-9505446 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr6_2:9505457-9505476 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr6_2:9505471-9505490 | Msa0908240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr6_2:9505513-9505532 | Msa0908240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr6_2:9505555-9505574 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_2:9505558-9505577 | Msa0908240:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | chr6_2:9504263-9504282 | Msa0908240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | chr6_2:9504294-9504313 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | chr6_2:9504309-9504328 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | chr6_2:9504314-9504333 | Msa0908240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | chr6_2:9504321-9504340 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | chr6_2:9504387-9504406 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | chr6_2:9504506-9504525 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | chr6_2:9504560-9504579 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | chr6_2:9504564-9504583 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr6_2:9504685-9504704 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr6_2:9504684-9504703 | Msa0908240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr6_2:9505033-9505052 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr6_2:9505054-9505073 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | chr6_2:9505247-9505266 | Msa0908240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | chr6_2:9505406-9505425 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr6_2:9505417-9505436 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr6_2:9505427-9505446 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr6_2:9505457-9505476 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr6_2:9505471-9505490 | Msa0908240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr6_2:9505513-9505532 | Msa0908240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr6_2:9505555-9505574 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr6_2:9505558-9505577 | Msa0908240:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | chr6_2:9504295-9504314 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | chr6_2:9504386-9504405 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_2:9504598-9504617 | Msa0908240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_2:9504602-9504621 | Msa0908240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_2:9504608-9504627 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr6_2:9504656-9504675 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_2:9504657-9504676 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_2:9504658-9504677 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_2:9504657-9504676 | Msa0908240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | chr6_2:9505004-9505023 | Msa0908240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr6_2:9505108-9505127 | Msa0908240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_2:9505252-9505271 | Msa0908240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_2:9505269-9505288 | Msa0908240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr6_2:9505342-9505361 | Msa0908240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_2:9505517-9505536 | Msa0908240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_2:9505518-9505537 | Msa0908240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_2:9505534-9505553 | Msa0908240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr6_2:9505586-9505605 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | chr6_2:9504295-9504314 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | chr6_2:9504386-9504405 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr6_2:9504598-9504617 | Msa0908240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr6_2:9504602-9504621 | Msa0908240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr6_2:9504608-9504627 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr6_2:9504656-9504675 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr6_2:9504657-9504676 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr6_2:9504658-9504677 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr6_2:9504657-9504676 | Msa0908240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | chr6_2:9505004-9505023 | Msa0908240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr6_2:9505108-9505127 | Msa0908240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | chr6_2:9505252-9505271 | Msa0908240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr6_2:9505269-9505288 | Msa0908240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr6_2:9505342-9505361 | Msa0908240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr6_2:9505517-9505536 | Msa0908240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr6_2:9505518-9505537 | Msa0908240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr6_2:9505534-9505553 | Msa0908240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr6_2:9505586-9505605 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | chr6_2:9504385-9504404 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_2:9505036-9505055 | Msa0908240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr6_2:9505311-9505330 | Msa0908240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr6_2:9505350-9505369 | Msa0908240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr6_2:9505442-9505461 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_2:9505524-9505543 | Msa0908240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr6_2:9505587-9505606 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr6_2:9505584-9505603 | Msa0908240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_2:9505597-9505616 | Msa0908240:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | chr6_2:9504385-9504404 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr6_2:9505036-9505055 | Msa0908240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr6_2:9505311-9505330 | Msa0908240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr6_2:9505350-9505369 | Msa0908240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr6_2:9505442-9505461 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr6_2:9505524-9505543 | Msa0908240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr6_2:9505587-9505606 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr6_2:9505584-9505603 | Msa0908240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr6_2:9505597-9505616 | Msa0908240:CDS | 50.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | chr6_2:9504383-9504402 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | chr6_2:9504384-9504403 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | chr6_2:9504986-9505005 | Msa0908240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr6_2:9504987-9505006 | Msa0908240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | chr6_2:9504995-9505014 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr6_2:9505438-9505457 | Msa0908240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr6_2:9505576-9505595 | Msa0908240:intron | 55.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | chr6_2:9504383-9504402 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | chr6_2:9504384-9504403 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | chr6_2:9504986-9505005 | Msa0908240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr6_2:9504987-9505006 | Msa0908240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | chr6_2:9504995-9505014 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr6_2:9505438-9505457 | Msa0908240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr6_2:9505576-9505595 | Msa0908240:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr6_2:9504634-9504653 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr6_2:9504651-9504670 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr6_2:9504649-9504668 | Msa0908240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | chr6_2:9504991-9505010 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | chr6_2:9504988-9505007 | Msa0908240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | chr6_2:9504992-9505011 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr6_2:9504634-9504653 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr6_2:9504651-9504670 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr6_2:9504649-9504668 | Msa0908240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | chr6_2:9504991-9505010 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | chr6_2:9504988-9505007 | Msa0908240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | chr6_2:9504992-9505011 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr6_2:9504644-9504663 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr6_2:9504644-9504663 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9504252 | 9505653 | 9504252 | ID=Msa0908240;Name=Msa0908240 |
| chr6_2 | mRNA | 9504252 | 9505653 | 9504252 | ID=Msa0908240-mRNA-1;Parent=Msa0908240;Name=Msa0908240-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|160 |
| chr6_2 | exon | 9505577 | 9505653 | 9505577 | ID=Msa0908240-mRNA-1:exon:2304;Parent=Msa0908240-mRNA-1 |
| chr6_2 | exon | 9505441 | 9505484 | 9505441 | ID=Msa0908240-mRNA-1:exon:2303;Parent=Msa0908240-mRNA-1 |
| chr6_2 | exon | 9505218 | 9505285 | 9505218 | ID=Msa0908240-mRNA-1:exon:2302;Parent=Msa0908240-mRNA-1 |
| chr6_2 | exon | 9504252 | 9504545 | 9504252 | ID=Msa0908240-mRNA-1:exon:2301;Parent=Msa0908240-mRNA-1 |
| chr6_2 | CDS | 9505577 | 9505653 | 9505577 | ID=Msa0908240-mRNA-1:cds;Parent=Msa0908240-mRNA-1 |
| chr6_2 | CDS | 9505441 | 9505484 | 9505441 | ID=Msa0908240-mRNA-1:cds;Parent=Msa0908240-mRNA-1 |
| chr6_2 | CDS | 9505218 | 9505285 | 9505218 | ID=Msa0908240-mRNA-1:cds;Parent=Msa0908240-mRNA-1 |
| chr6_2 | CDS | 9504252 | 9504545 | 9504252 | ID=Msa0908240-mRNA-1:cds;Parent=Msa0908240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
