Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911230 | AES79107.1 | 77.215 | 158 | 28 | 2 | 1 | 152 | 40 | 195 | 3.50e-74 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911230 | sp|A4GYN8|RR12B_POPTR | 94.845 | 97 | 5 | 0 | 56 | 152 | 39 | 135 | 2.38e-60 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202640 | Msa0911230 | 0.804759 | 1.851421e-49 | -8.615850e-47 |
| Msa0405420 | Msa0911230 | 0.829718 | 4.400164e-55 | -8.615850e-47 |
| Msa0405430 | Msa0911230 | 0.804213 | 2.406590e-49 | -8.615850e-47 |
| Msa0405440 | Msa0911230 | 0.881578 | 2.136737e-70 | -8.615850e-47 |
| Msa0405510 | Msa0911230 | 0.816635 | 4.994902e-52 | -8.615850e-47 |
| Msa0405530 | Msa0911230 | 0.903072 | 5.058267e-79 | -8.615850e-47 |
| Msa0263770 | Msa0911230 | 0.843052 | 1.776111e-58 | -8.615850e-47 |
| Msa0268260 | Msa0911230 | 0.809996 | 1.435786e-50 | -8.615850e-47 |
| Msa0268270 | Msa0911230 | 0.882274 | 1.195081e-70 | -8.615850e-47 |
| Msa0268300 | Msa0911230 | 0.839877 | 1.218259e-57 | -8.615850e-47 |
| Msa0268570 | Msa0911230 | 0.819294 | 1.252545e-52 | -8.615850e-47 |
| Msa0268630 | Msa0911230 | 0.817027 | 4.079507e-52 | -8.615850e-47 |
| Msa0268750 | Msa0911230 | 0.834500 | 2.891101e-56 | -8.615850e-47 |
| Msa0268830 | Msa0911230 | 0.823872 | 1.095992e-53 | -8.615850e-47 |
| Msa0268950 | Msa0911230 | 0.807242 | 5.562927e-50 | -8.615850e-47 |
| Msa0268960 | Msa0911230 | 0.832500 | 9.126871e-56 | -8.615850e-47 |
| Msa0269040 | Msa0911230 | 0.810544 | 1.093278e-50 | -8.615850e-47 |
| Msa0269070 | Msa0911230 | 0.802602 | 5.190124e-49 | -8.615850e-47 |
| Msa0269140 | Msa0911230 | 0.821468 | 3.972757e-53 | -8.615850e-47 |
| Msa0269150 | Msa0911230 | 0.900146 | 9.806096e-78 | -8.615850e-47 |
| Msa0344190 | Msa0911230 | 0.807571 | 4.735538e-50 | -8.615850e-47 |
| Msa0484040 | Msa0911230 | 0.810390 | 1.180686e-50 | -8.615850e-47 |
| Msa0582510 | Msa0911230 | 0.802022 | 6.833232e-49 | -8.615850e-47 |
| Msa0582650 | Msa0911230 | 0.822731 | 2.024456e-53 | -8.615850e-47 |
| Msa0582690 | Msa0911230 | 0.811065 | 8.433311e-51 | -8.615850e-47 |
| Msa0582770 | Msa0911230 | 0.822014 | 2.970312e-53 | -8.615850e-47 |
| Msa0582810 | Msa0911230 | 0.822853 | 1.896913e-53 | -8.615850e-47 |
| Msa0582920 | Msa0911230 | 0.827608 | 1.424039e-54 | -8.615850e-47 |
| Msa0591310 | Msa0911230 | 0.828959 | 6.725991e-55 | -8.615850e-47 |
| Msa0591350 | Msa0911230 | 0.850527 | 1.603145e-60 | -8.615850e-47 |
| Msa0591360 | Msa0911230 | 0.814178 | 1.758636e-51 | -8.615850e-47 |
| Msa0591380 | Msa0911230 | 0.807030 | 6.167858e-50 | -8.615850e-47 |
| Msa0867680 | Msa0911230 | 0.840375 | 9.031416e-58 | -8.615850e-47 |
| Msa0867690 | Msa0911230 | 0.801622 | 8.254427e-49 | -8.615850e-47 |
| Msa0876520 | Msa0911230 | 0.809022 | 2.322959e-50 | -8.615850e-47 |
| Msa0908220 | Msa0911230 | 0.806588 | 7.647557e-50 | -8.615850e-47 |
| Msa0908230 | Msa0911230 | 0.815579 | 8.599904e-52 | -8.615850e-47 |
| Msa0908240 | Msa0911230 | 0.890277 | 1.139122e-73 | -8.615850e-47 |
| Msa0908310 | Msa0911230 | 0.871934 | 4.679519e-67 | -8.615850e-47 |
| Msa0908320 | Msa0911230 | 0.810674 | 1.024766e-50 | -8.615850e-47 |
| Msa0908370 | Msa0911230 | 0.863085 | 3.201672e-64 | -8.615850e-47 |
| Msa0908380 | Msa0911230 | 0.815201 | 1.043491e-51 | -8.615850e-47 |
| Msa0908430 | Msa0911230 | 0.819493 | 1.128140e-52 | -8.615850e-47 |
| Msa0908440 | Msa0911230 | 0.825261 | 5.161393e-54 | -8.615850e-47 |
| Msa0908450 | Msa0911230 | 0.881827 | 1.736386e-70 | -8.615850e-47 |
| Msa0908480 | Msa0911230 | 0.823316 | 1.479317e-53 | -8.615850e-47 |
| Msa0908530 | Msa0911230 | 0.853002 | 3.185677e-61 | -8.615850e-47 |
| Msa0908590 | Msa0911230 | 0.800582 | 1.347150e-48 | -8.615850e-47 |
| Msa0908610 | Msa0911230 | 0.882157 | 1.318039e-70 | -8.615850e-47 |
| Msa0908670 | Msa0911230 | 0.886158 | 4.363942e-72 | -8.615850e-47 |
| Msa0908720 | Msa0911230 | 0.850844 | 1.305401e-60 | -8.615850e-47 |
| Msa0911190 | Msa0911230 | 0.907456 | 4.969877e-81 | -8.615850e-47 |
| Msa0911200 | Msa0911230 | 0.828745 | 7.578730e-55 | -8.615850e-47 |
| Msa0911230 | Msa0924830 | 0.822052 | 2.911560e-53 | -8.615850e-47 |
| Msa0911230 | Msa0924880 | 0.805456 | 1.323201e-49 | -8.615850e-47 |
| Msa0911230 | Msa0924920 | 0.856959 | 2.260662e-62 | -8.615850e-47 |
| Msa0911230 | Msa0924930 | 0.836536 | 8.836759e-57 | -8.615850e-47 |
| Msa0911230 | Msa0924940 | 0.806444 | 8.202818e-50 | -8.615850e-47 |
| Msa0911230 | Msa0925100 | 0.875927 | 2.093727e-68 | -8.615850e-47 |
| Msa0911230 | Msa0925110 | 0.834576 | 2.767258e-56 | -8.615850e-47 |
| Msa0911230 | Msa0931110 | 0.801272 | 9.735321e-49 | -8.615850e-47 |
| Msa0911230 | Msa0931130 | 0.807141 | 5.843698e-50 | -8.615850e-47 |
| Msa0911230 | Msa0931220 | 0.801754 | 7.754902e-49 | -8.615850e-47 |
| Msa0911230 | Msa0931260 | 0.814642 | 1.388218e-51 | -8.615850e-47 |
| Msa0911230 | Msa0983630 | 0.832670 | 8.280192e-56 | -8.615850e-47 |
| Msa0911230 | Msa0983640 | 0.800780 | 1.227339e-48 | -8.615850e-47 |
| Msa0911230 | Msa1022050 | 0.840035 | 1.107746e-57 | -8.615850e-47 |
| Msa0911230 | Msa1022060 | 0.825251 | 5.189663e-54 | -8.615850e-47 |
| Msa0911230 | Msa1064410 | 0.837027 | 6.623212e-57 | -8.615850e-47 |
| Msa0911230 | Msa1086080 | 0.801232 | 9.922866e-49 | -8.615850e-47 |
| Msa0911230 | Msa1086090 | 0.840883 | 6.648602e-58 | -8.615850e-47 |
| Msa0911230 | Msa1086140 | 0.801981 | 6.965382e-49 | -8.615850e-47 |
| Msa0911230 | Msa1086190 | 0.808271 | 3.361934e-50 | -8.615850e-47 |
| Msa0911230 | Msa1086200 | 0.840978 | 6.276858e-58 | -8.615850e-47 |
| Msa0911230 | Msa1086270 | 0.806884 | 6.622252e-50 | -8.615850e-47 |
| Msa0911230 | Msa1086550 | 0.808963 | 2.391586e-50 | -8.615850e-47 |
| Msa0911230 | Msa1086600 | 0.821688 | 3.535040e-53 | -8.615850e-47 |
| Msa0911230 | Msa1086720 | 0.817738 | 2.821529e-52 | -8.615850e-47 |
| Msa0911230 | Msa1086730 | 0.819321 | 1.235166e-52 | -8.615850e-47 |
| Msa0911230 | Msa1086740 | 0.888531 | 5.438153e-73 | -8.615850e-47 |
| Msa0911230 | Msa1086790 | 0.872705 | 2.590110e-67 | -8.615850e-47 |
| Msa0911230 | Msa1086800 | 0.808643 | 2.799886e-50 | -8.615850e-47 |
| Msa0911230 | Msa1086890 | 0.810803 | 9.612619e-51 | -8.615850e-47 |
| Msa0911230 | Msa1086900 | 0.822282 | 2.574469e-53 | -8.615850e-47 |
| Msa0911230 | Msa1086960 | 0.879481 | 1.203511e-69 | -8.615850e-47 |
| Msa0911230 | Msa1087030 | 0.830987 | 2.154224e-55 | -8.615850e-47 |
| Msa0911230 | Msa1087040 | 0.803379 | 3.584788e-49 | -8.615850e-47 |
| Msa0911230 | Msa1087050 | 0.864597 | 1.084747e-64 | -8.615850e-47 |
| Msa0911230 | Msa1087110 | 0.876974 | 9.109045e-69 | -8.615850e-47 |
| Msa0911230 | Msa1087120 | 0.813198 | 2.889933e-51 | -8.615850e-47 |
| Msa0911230 | Msa1143170 | 0.824044 | 9.991032e-54 | -8.615850e-47 |
| Msa0911230 | Msa1354420 | 0.861819 | 7.845079e-64 | -8.615850e-47 |
| Msa0911230 | Msa1354480 | 0.810808 | 9.586091e-51 | -8.615850e-47 |
| Msa0911230 | Msa1354490 | 0.817015 | 4.105075e-52 | -8.615850e-47 |
| Msa0911230 | Msa1354500 | 0.895090 | 1.333551e-75 | -8.615850e-47 |
| Msa0911230 | Msa1354550 | 0.863766 | 1.969154e-64 | -8.615850e-47 |
| Msa0911230 | Msa1354560 | 0.815042 | 1.132291e-51 | -8.615850e-47 |
| Msa0911230 | Msa1354610 | 0.829703 | 4.438125e-55 | -8.615850e-47 |
| Msa0911230 | Msa1354620 | 0.828519 | 8.594670e-55 | -8.615850e-47 |
| Msa0911230 | Msa1354630 | 0.903602 | 2.927444e-79 | -8.615850e-47 |
| Msa0911230 | Msa1354680 | 0.905972 | 2.438992e-80 | -8.615850e-47 |
| Msa0911230 | Msa1354690 | 0.806313 | 8.741172e-50 | -8.615850e-47 |
| Msa0911230 | Msa1354740 | 0.836132 | 1.119545e-56 | -8.615850e-47 |
| Msa0911230 | Msa1354750 | 0.819466 | 1.144182e-52 | -8.615850e-47 |
| Msa0911230 | Msa1354760 | 0.890809 | 7.038856e-74 | -8.615850e-47 |
| Msa0911230 | Msa1354810 | 0.862475 | 4.937328e-64 | -8.615850e-47 |
| Msa0911230 | Msa1354920 | 0.813524 | 2.450795e-51 | -8.615850e-47 |
| Msa0911230 | Msa1354980 | 0.856543 | 2.996719e-62 | -8.615850e-47 |
| Msa0911230 | Msa1354990 | 0.804028 | 2.629755e-49 | -8.615850e-47 |
| Msa0911230 | Msa1355090 | 0.802065 | 6.693650e-49 | -8.615850e-47 |
| Msa0911230 | Msa1365890 | 0.847039 | 1.487479e-59 | -8.615850e-47 |
| Msa0911230 | Msa1365970 | 0.882996 | 6.514165e-71 | -8.615850e-47 |
| Msa0911230 | Msa1366080 | 0.842445 | 2.574137e-58 | -8.615850e-47 |
| Msa0911230 | Msa1368230 | 0.806140 | 9.503249e-50 | -8.615850e-47 |
| Msa0911230 | Msa1368240 | 0.877562 | 5.688810e-69 | -8.615850e-47 |
| Msa0911230 | Msa1385410 | 0.831781 | 1.374078e-55 | -8.615850e-47 |
| Msa0911230 | Msa1391100 | 0.815817 | 7.613269e-52 | -8.615850e-47 |
| Msa0911230 | Msa1391110 | 0.886652 | 2.838912e-72 | -8.615850e-47 |
| Msa0911230 | Msa1391160 | 0.843183 | 1.638608e-58 | -8.615850e-47 |
| Msa0911230 | Msa1391240 | 0.879742 | 9.719522e-70 | -8.615850e-47 |
| Msa0911230 | Msa1394030 | 0.838085 | 3.546334e-57 | -8.615850e-47 |
| Msa0911230 | Msa1394040 | 0.802842 | 4.630082e-49 | -8.615850e-47 |
| Msa0911230 | Msa1394150 | 0.801736 | 7.823501e-49 | -8.615850e-47 |
| Msa0911230 | Msa1394160 | 0.818526 | 1.871925e-52 | -8.615850e-47 |
| Msa0911230 | Msa1394210 | 0.812845 | 3.454063e-51 | -8.615850e-47 |
| Msa0911230 | Msa1460120 | 0.820970 | 5.177007e-53 | -8.615850e-47 |
| Msa0911230 | Msa1460130 | 0.800883 | 1.169308e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911230 | MtrunA17_Chr7g0234981 | 87.500 | 88 | 11 | 0 | 65 | 152 | 6 | 93 | 1.88e-49 | 154 |
| Msa0911230 | MtrunA17_MTg0491661 | 66.265 | 83 | 28 | 0 | 70 | 152 | 41 | 123 | 4.31e-35 | 118 |
| Msa0911230 | MtrunA17_CPg0492401 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 3.81e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911230 | ATCG00905.1 | 97.647 | 85 | 2 | 0 | 68 | 152 | 1 | 85 | 7.68e-55 | 167 |
| Msa0911230 | ATCG01230.1 | 97.647 | 85 | 2 | 0 | 68 | 152 | 1 | 85 | 7.68e-55 | 167 |
| Msa0911230 | AT2G07675.1 | 51.639 | 122 | 52 | 2 | 31 | 152 | 9 | 123 | 1.59e-34 | 117 |
| Msa0911230 | ATMG00980.1 | 51.639 | 122 | 52 | 2 | 31 | 152 | 9 | 123 | 1.59e-34 | 117 |
Find 40 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCTTTCGAAGTAAT+TGG | 0.147507 | 6_2:-17452069 | None:intergenic |
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | 6_2:-17452420 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | 6_2:+17452387 | Msa0911230:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | 6_2:-17452269 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | 6_2:+17451426 | Msa0911230:CDS |
| AACCTATGTTGTATATTAAG+AGG | 0.361677 | 6_2:+17451355 | None:intergenic |
| ACTTTATGTAAGGCAGAGTT+TGG | 0.362691 | 6_2:-17452189 | None:intergenic |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | 6_2:-17452359 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | 6_2:+17452388 | Msa0911230:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | 6_2:-17452386 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | 6_2:-17452259 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | 6_2:+17452285 | Msa0911230:CDS |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | 6_2:+17452213 | Msa0911230:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | 6_2:-17451418 | None:intergenic |
| TACTCTGGCAACTTTATGTA+AGG | 0.490956 | 6_2:-17452199 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | 6_2:+17452246 | Msa0911230:CDS |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | 6_2:-17452358 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | 6_2:+17452359 | Msa0911230:CDS |
| ATTGAACGAGGAGCCGTATG+AGG | 0.537706 | 6_2:+17452086 | Msa0911230:CDS |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | 6_2:+17452286 | Msa0911230:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | 6_2:+17452125 | Msa0911230:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | 6_2:-17452214 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | 6_2:+17452240 | Msa0911230:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | 6_2:+17452333 | Msa0911230:CDS |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | 6_2:+17451434 | Msa0911230:CDS |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | 6_2:+17452287 | Msa0911230:CDS |
| AACCTCTTAATATACAACAT+AGG | 0.594876 | 6_2:-17451357 | None:intergenic |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | 6_2:+17452372 | Msa0911230:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | 6_2:-17452258 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | 6_2:+17452351 | Msa0911230:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | 6_2:-17452229 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | 6_2:-17451408 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | 6_2:+17452389 | Msa0911230:CDS |
| ATTGTACCATCCTAAAAGCA+AGG | 0.638231 | 6_2:-17451385 | None:intergenic |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | 6_2:+17452309 | Msa0911230:CDS |
| GAGTGGAGATTATCGAACGA+AGG | 0.659654 | 6_2:+17452044 | Msa0911230:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | 6_2:+17452288 | Msa0911230:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | 6_2:-17452327 | None:intergenic |
| TACTTCGAAAGAATTGAACG+AGG | 0.737159 | 6_2:+17452074 | Msa0911230:CDS |
| GTACCATCCTAAAAGCAAGG+AGG | 0.768564 | 6_2:-17451382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGAATAGAAAATATTAA+TGG | + | chr6_2:17451611-17451630 | Msa0911230:intron | 15.0% |
| !! | TGAGAATAATAAAAAAAGAA+AGG | + | chr6_2:17451961-17451980 | Msa0911230:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | + | chr6_2:17451611-17451630 | Msa0911230:intron | 15.0% |
| !! | TGAGAATAATAAAAAAAGAA+AGG | + | chr6_2:17451961-17451980 | Msa0911230:intron | 15.0% |
| !!! | AATTAGTTCTCGTTATTTTT+AGG | + | chr6_2:17452017-17452036 | Msa0911230:intron | 20.0% |
| !!! | ATTAGTTCTCGTTATTTTTA+GGG | + | chr6_2:17452018-17452037 | Msa0911230:intron | 20.0% |
| !!! | AATTAGTTCTCGTTATTTTT+AGG | + | chr6_2:17452017-17452036 | Msa0911230:intron | 20.0% |
| !!! | ATTAGTTCTCGTTATTTTTA+GGG | + | chr6_2:17452018-17452037 | Msa0911230:intron | 20.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | - | chr6_2:17451497-17451516 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | + | chr6_2:17451719-17451738 | Msa0911230:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | + | chr6_2:17451795-17451814 | Msa0911230:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | + | chr6_2:17451796-17451815 | Msa0911230:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | + | chr6_2:17451863-17451882 | Msa0911230:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | + | chr6_2:17451873-17451892 | Msa0911230:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | - | chr6_2:17451936-17451955 | None:intergenic | 25.0% |
| !!! | AAAAAAGAAAGGTGTTCAAT+TGG | + | chr6_2:17451972-17451991 | Msa0911230:intron | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | - | chr6_2:17452072-17452091 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | - | chr6_2:17452272-17452291 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | - | chr6_2:17451497-17451516 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | + | chr6_2:17451719-17451738 | Msa0911230:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | + | chr6_2:17451795-17451814 | Msa0911230:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | + | chr6_2:17451796-17451815 | Msa0911230:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | + | chr6_2:17451863-17451882 | Msa0911230:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | + | chr6_2:17451873-17451892 | Msa0911230:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | - | chr6_2:17451936-17451955 | None:intergenic | 25.0% |
| !!! | AAAAAAGAAAGGTGTTCAAT+TGG | + | chr6_2:17451972-17451991 | Msa0911230:intron | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | - | chr6_2:17452072-17452091 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | - | chr6_2:17452272-17452291 | None:intergenic | 25.0% |
| ! | CAATTGGATCTAAAATTGAC+GGG | - | chr6_2:17451852-17451871 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | - | chr6_2:17451853-17451872 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | + | chr6_2:17451851-17451870 | Msa0911230:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | - | chr6_2:17451868-17451887 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | + | chr6_2:17451866-17451885 | Msa0911230:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | + | chr6_2:17451872-17451891 | Msa0911230:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | - | chr6_2:17452262-17452281 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | + | chr6_2:17452286-17452305 | Msa0911230:CDS | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | + | chr6_2:17452388-17452407 | Msa0911230:CDS | 30.0% |
| ! | CAATTGGATCTAAAATTGAC+GGG | - | chr6_2:17451852-17451871 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | - | chr6_2:17451853-17451872 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | + | chr6_2:17451851-17451870 | Msa0911230:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | - | chr6_2:17451868-17451887 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | + | chr6_2:17451866-17451885 | Msa0911230:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | + | chr6_2:17451872-17451891 | Msa0911230:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | - | chr6_2:17452262-17452281 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | + | chr6_2:17452286-17452305 | Msa0911230:CDS | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | + | chr6_2:17452388-17452407 | Msa0911230:CDS | 30.0% |
| ATTGTACCATCCTAAAAGCA+AGG | - | chr6_2:17451388-17451407 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | + | chr6_2:17451650-17451669 | Msa0911230:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | - | chr6_2:17451678-17451697 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | + | chr6_2:17451850-17451869 | Msa0911230:intron | 35.0% |
| !!! | GTTCTCGTTATTTTTAGGGA+AGG | + | chr6_2:17452022-17452041 | Msa0911230:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | + | chr6_2:17452074-17452093 | Msa0911230:CDS | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | - | chr6_2:17452102-17452121 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | + | chr6_2:17452104-17452123 | Msa0911230:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | - | chr6_2:17452172-17452191 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | - | chr6_2:17452182-17452201 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | - | chr6_2:17452183-17452202 | None:intergenic | 35.0% |
| ACTTTATGTAAGGCAGAGTT+TGG | - | chr6_2:17452192-17452211 | None:intergenic | 35.0% | |
| TACTCTGGCAACTTTATGTA+AGG | - | chr6_2:17452202-17452221 | None:intergenic | 35.0% | |
| GAAATCACTGCTTATATACC+CGG | + | chr6_2:17452240-17452259 | Msa0911230:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | - | chr6_2:17452261-17452280 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | + | chr6_2:17452285-17452304 | Msa0911230:CDS | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | + | chr6_2:17452287-17452306 | Msa0911230:CDS | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | - | chr6_2:17452389-17452408 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | + | chr6_2:17452387-17452406 | Msa0911230:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | + | chr6_2:17452389-17452408 | Msa0911230:CDS | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | - | chr6_2:17451388-17451407 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | + | chr6_2:17451650-17451669 | Msa0911230:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | - | chr6_2:17451678-17451697 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | + | chr6_2:17451850-17451869 | Msa0911230:intron | 35.0% |
| !!! | GTTCTCGTTATTTTTAGGGA+AGG | + | chr6_2:17452022-17452041 | Msa0911230:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | + | chr6_2:17452074-17452093 | Msa0911230:CDS | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | - | chr6_2:17452102-17452121 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | + | chr6_2:17452104-17452123 | Msa0911230:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | - | chr6_2:17452172-17452191 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | - | chr6_2:17452182-17452201 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | - | chr6_2:17452183-17452202 | None:intergenic | 35.0% |
| ACTTTATGTAAGGCAGAGTT+TGG | - | chr6_2:17452192-17452211 | None:intergenic | 35.0% | |
| TACTCTGGCAACTTTATGTA+AGG | - | chr6_2:17452202-17452221 | None:intergenic | 35.0% | |
| GAAATCACTGCTTATATACC+CGG | + | chr6_2:17452240-17452259 | Msa0911230:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | - | chr6_2:17452261-17452280 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | + | chr6_2:17452285-17452304 | Msa0911230:CDS | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | + | chr6_2:17452287-17452306 | Msa0911230:CDS | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | - | chr6_2:17452389-17452408 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | + | chr6_2:17452387-17452406 | Msa0911230:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | + | chr6_2:17452389-17452408 | Msa0911230:CDS | 35.0% |
| TTTCTTGCGTGATGAACTGT+TGG | - | chr6_2:17451462-17451481 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | + | chr6_2:17451461-17451480 | Msa0911230:intron | 40.0% | |
| AGCGGGTATCTTTCACAAAA+AGG | + | chr6_2:17451779-17451798 | Msa0911230:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | - | chr6_2:17451808-17451827 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | - | chr6_2:17451829-17451848 | None:intergenic | 40.0% | |
| !!! | CGTTATTTTTAGGGAAGGAG+TGG | + | chr6_2:17452027-17452046 | Msa0911230:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | - | chr6_2:17452181-17452200 | None:intergenic | 40.0% |
| AGCAGTGATTTCAAATCCAG+AGG | - | chr6_2:17452232-17452251 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | + | chr6_2:17452246-17452265 | Msa0911230:CDS | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | + | chr6_2:17452288-17452307 | Msa0911230:CDS | 40.0% |
| ACAATGTGATATCTCACACC+AGG | - | chr6_2:17452330-17452349 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | + | chr6_2:17452333-17452352 | Msa0911230:CDS | 40.0% | |
| TTTCTTGCGTGATGAACTGT+TGG | - | chr6_2:17451462-17451481 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | + | chr6_2:17451461-17451480 | Msa0911230:intron | 40.0% | |
| AGCGGGTATCTTTCACAAAA+AGG | + | chr6_2:17451779-17451798 | Msa0911230:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | - | chr6_2:17451808-17451827 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | - | chr6_2:17451829-17451848 | None:intergenic | 40.0% | |
| !!! | CGTTATTTTTAGGGAAGGAG+TGG | + | chr6_2:17452027-17452046 | Msa0911230:intron | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | - | chr6_2:17452181-17452200 | None:intergenic | 40.0% |
| AGCAGTGATTTCAAATCCAG+AGG | - | chr6_2:17452232-17452251 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | + | chr6_2:17452246-17452265 | Msa0911230:CDS | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | + | chr6_2:17452288-17452307 | Msa0911230:CDS | 40.0% |
| ACAATGTGATATCTCACACC+AGG | - | chr6_2:17452330-17452349 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | + | chr6_2:17452333-17452352 | Msa0911230:CDS | 40.0% | |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | + | chr6_2:17451375-17451394 | Msa0911230:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | + | chr6_2:17451379-17451398 | Msa0911230:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | - | chr6_2:17451385-17451404 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | - | chr6_2:17451433-17451452 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | - | chr6_2:17451434-17451453 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | - | chr6_2:17451435-17451454 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | + | chr6_2:17451434-17451453 | Msa0911230:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | + | chr6_2:17451883-17451902 | Msa0911230:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | + | chr6_2:17452044-17452063 | Msa0911230:CDS | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | + | chr6_2:17452117-17452136 | Msa0911230:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | + | chr6_2:17452292-17452311 | Msa0911230:CDS | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | + | chr6_2:17452293-17452312 | Msa0911230:CDS | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | + | chr6_2:17452309-17452328 | Msa0911230:CDS | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | - | chr6_2:17452361-17452380 | None:intergenic | 45.0% | |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | + | chr6_2:17451375-17451394 | Msa0911230:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | + | chr6_2:17451379-17451398 | Msa0911230:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | - | chr6_2:17451385-17451404 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | - | chr6_2:17451433-17451452 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | - | chr6_2:17451434-17451453 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | - | chr6_2:17451435-17451454 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | + | chr6_2:17451434-17451453 | Msa0911230:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | + | chr6_2:17451883-17451902 | Msa0911230:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | + | chr6_2:17452044-17452063 | Msa0911230:CDS | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | + | chr6_2:17452117-17452136 | Msa0911230:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | + | chr6_2:17452292-17452311 | Msa0911230:CDS | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | + | chr6_2:17452293-17452312 | Msa0911230:CDS | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | + | chr6_2:17452309-17452328 | Msa0911230:CDS | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | - | chr6_2:17452361-17452380 | None:intergenic | 45.0% | |
| AGATACCCGCTTTCGTGCTT+TGG | - | chr6_2:17451770-17451789 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | + | chr6_2:17451811-17451830 | Msa0911230:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | + | chr6_2:17452086-17452105 | Msa0911230:CDS | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | + | chr6_2:17452125-17452144 | Msa0911230:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | - | chr6_2:17452217-17452236 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | + | chr6_2:17452299-17452318 | Msa0911230:CDS | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | - | chr6_2:17452362-17452381 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | + | chr6_2:17452359-17452378 | Msa0911230:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | + | chr6_2:17452372-17452391 | Msa0911230:CDS | 50.0% | |
| AGATACCCGCTTTCGTGCTT+TGG | - | chr6_2:17451770-17451789 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | + | chr6_2:17451811-17451830 | Msa0911230:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | + | chr6_2:17452086-17452105 | Msa0911230:CDS | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | + | chr6_2:17452125-17452144 | Msa0911230:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | - | chr6_2:17452217-17452236 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | + | chr6_2:17452299-17452318 | Msa0911230:CDS | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | - | chr6_2:17452362-17452381 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | + | chr6_2:17452359-17452378 | Msa0911230:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | + | chr6_2:17452372-17452391 | Msa0911230:CDS | 50.0% | |
| GACCCACCAAAGCACGAAAG+CGG | + | chr6_2:17451761-17451780 | Msa0911230:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | + | chr6_2:17451762-17451781 | Msa0911230:intron | 55.0% | |
| ACCCGCTTTCGTGCTTTGGT+GGG | - | chr6_2:17451766-17451785 | None:intergenic | 55.0% | |
| TACCCGCTTTCGTGCTTTGG+TGG | - | chr6_2:17451767-17451786 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | + | chr6_2:17452213-17452232 | Msa0911230:CDS | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | + | chr6_2:17452351-17452370 | Msa0911230:CDS | 55.0% | |
| GACCCACCAAAGCACGAAAG+CGG | + | chr6_2:17451761-17451780 | Msa0911230:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | + | chr6_2:17451762-17451781 | Msa0911230:intron | 55.0% | |
| ACCCGCTTTCGTGCTTTGGT+GGG | - | chr6_2:17451766-17451785 | None:intergenic | 55.0% | |
| TACCCGCTTTCGTGCTTTGG+TGG | - | chr6_2:17451767-17451786 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | + | chr6_2:17452213-17452232 | Msa0911230:CDS | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | + | chr6_2:17452351-17452370 | Msa0911230:CDS | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | - | chr6_2:17451411-17451430 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | - | chr6_2:17451428-17451447 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | + | chr6_2:17451426-17451445 | Msa0911230:CDS | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | - | chr6_2:17451411-17451430 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | - | chr6_2:17451428-17451447 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | + | chr6_2:17451426-17451445 | Msa0911230:CDS | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | - | chr6_2:17451421-17451440 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | - | chr6_2:17451421-17451440 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 17451360 | 17452428 | 17451360 | ID=Msa0911230;Name=Msa0911230 |
| chr6_2 | mRNA | 17451360 | 17452428 | 17451360 | ID=Msa0911230-mRNA-1;Parent=Msa0911230;Name=Msa0911230-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|3|0|152 |
| chr6_2 | exon | 17451360 | 17451455 | 17451360 | ID=Msa0911230-mRNA-1:exon:3674;Parent=Msa0911230-mRNA-1 |
| chr6_2 | exon | 17452039 | 17452107 | 17452039 | ID=Msa0911230-mRNA-1:exon:3675;Parent=Msa0911230-mRNA-1 |
| chr6_2 | exon | 17452135 | 17452428 | 17452135 | ID=Msa0911230-mRNA-1:exon:3676;Parent=Msa0911230-mRNA-1 |
| chr6_2 | CDS | 17451360 | 17451455 | 17451360 | ID=Msa0911230-mRNA-1:cds;Parent=Msa0911230-mRNA-1 |
| chr6_2 | CDS | 17452039 | 17452107 | 17452039 | ID=Msa0911230-mRNA-1:cds;Parent=Msa0911230-mRNA-1 |
| chr6_2 | CDS | 17452135 | 17452428 | 17452135 | ID=Msa0911230-mRNA-1:cds;Parent=Msa0911230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
