Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405420 | YP_009460313.1 | 96.774 | 310 | 5 | 1 | 1 | 305 | 106 | 415 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405420 | sp|P0CC47|NU2C2_CITSI | 95.082 | 305 | 8 | 1 | 1 | 305 | 124 | 421 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405420 | A0A2K9RHF9 | 96.774 | 310 | 5 | 1 | 1 | 305 | 106 | 415 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126750 | Msa0405420 | 0.810135 | 1.339811e-50 | -8.615850e-47 |
| Msa0405420 | Msa0405430 | 0.858348 | 8.761668e-63 | -8.615850e-47 |
| Msa0405420 | Msa0405440 | 0.864044 | 1.613958e-64 | -8.615850e-47 |
| Msa0405420 | Msa0405510 | 0.963257 | 7.278858e-122 | -8.615850e-47 |
| Msa0405420 | Msa0405520 | 0.843516 | 1.335922e-58 | -8.615850e-47 |
| Msa0405420 | Msa0405530 | 0.864502 | 1.161199e-64 | -8.615850e-47 |
| Msa0405420 | Msa0459400 | 0.810249 | 1.266268e-50 | -8.615850e-47 |
| Msa0405420 | Msa0582510 | 0.805568 | 1.253743e-49 | -8.615850e-47 |
| Msa0405420 | Msa0582640 | 0.805326 | 1.408878e-49 | -8.615850e-47 |
| Msa0405420 | Msa0582690 | 0.811502 | 6.780916e-51 | -8.615850e-47 |
| Msa0405420 | Msa0582760 | 0.802439 | 5.608387e-49 | -8.615850e-47 |
| Msa0405420 | Msa0582770 | 0.801427 | 9.052139e-49 | -8.615850e-47 |
| Msa0405420 | Msa0582810 | 0.815455 | 9.164965e-52 | -8.615850e-47 |
| Msa0405420 | Msa0582910 | 0.819717 | 1.003228e-52 | -8.615850e-47 |
| Msa0405420 | Msa0591270 | 0.813245 | 2.822503e-51 | -8.615850e-47 |
| Msa0405420 | Msa0591290 | 0.810789 | 9.677894e-51 | -8.615850e-47 |
| Msa0405420 | Msa0591310 | 0.902561 | 8.550290e-79 | -8.615850e-47 |
| Msa0405420 | Msa0591350 | 0.873206 | 1.760122e-67 | -8.615850e-47 |
| Msa0405420 | Msa0591360 | 0.851868 | 6.702674e-61 | -8.615850e-47 |
| Msa0405420 | Msa0591380 | 0.840064 | 1.088648e-57 | -8.615850e-47 |
| Msa0405420 | Msa0867680 | 0.840738 | 7.257125e-58 | -8.615850e-47 |
| Msa0405420 | Msa0867690 | 0.849677 | 2.773022e-60 | -8.615850e-47 |
| Msa0405420 | Msa0876520 | 0.822801 | 1.950778e-53 | -8.615850e-47 |
| Msa0405420 | Msa0908220 | 0.848249 | 6.913732e-60 | -8.615850e-47 |
| Msa0405420 | Msa0908230 | 0.848210 | 7.087289e-60 | -8.615850e-47 |
| Msa0405420 | Msa0908240 | 0.831726 | 1.417768e-55 | -8.615850e-47 |
| Msa0405420 | Msa0908310 | 0.848084 | 7.678218e-60 | -8.615850e-47 |
| Msa0405420 | Msa0908320 | 0.865581 | 5.324438e-65 | -8.615850e-47 |
| Msa0405420 | Msa0908370 | 0.841234 | 5.375861e-58 | -8.615850e-47 |
| Msa0405420 | Msa0908380 | 0.836294 | 1.018064e-56 | -8.615850e-47 |
| Msa0405420 | Msa0908430 | 0.870739 | 1.162079e-66 | -8.615850e-47 |
| Msa0405420 | Msa0908440 | 0.853075 | 3.036880e-61 | -8.615850e-47 |
| Msa0405420 | Msa0908450 | 0.860685 | 1.738645e-63 | -8.615850e-47 |
| Msa0405420 | Msa0908480 | 0.816604 | 5.075165e-52 | -8.615850e-47 |
| Msa0405420 | Msa0908530 | 0.866511 | 2.702373e-65 | -8.615850e-47 |
| Msa0405420 | Msa0908540 | 0.854590 | 1.112666e-61 | -8.615850e-47 |
| Msa0405420 | Msa0908590 | 0.862237 | 5.840957e-64 | -8.615850e-47 |
| Msa0405420 | Msa0908600 | 0.852840 | 3.544002e-61 | -8.615850e-47 |
| Msa0405420 | Msa0908610 | 0.829061 | 6.355220e-55 | -8.615850e-47 |
| Msa0405420 | Msa0908650 | 0.879753 | 9.628674e-70 | -8.615850e-47 |
| Msa0405420 | Msa0908660 | 0.836843 | 7.378148e-57 | -8.615850e-47 |
| Msa0405420 | Msa0908670 | 0.861683 | 8.635365e-64 | -8.615850e-47 |
| Msa0405420 | Msa0908720 | 0.855770 | 5.049011e-62 | -8.615850e-47 |
| Msa0405420 | Msa0908730 | 0.839361 | 1.659102e-57 | -8.615850e-47 |
| Msa0405420 | Msa0911190 | 0.836026 | 1.191098e-56 | -8.615850e-47 |
| Msa0405420 | Msa0911200 | 0.849259 | 3.628017e-60 | -8.615850e-47 |
| Msa0405420 | Msa0911230 | 0.829718 | 4.400164e-55 | -8.615850e-47 |
| Msa0405420 | Msa0924830 | 0.836519 | 8.922929e-57 | -8.615850e-47 |
| Msa0405420 | Msa0924870 | 0.803959 | 2.717884e-49 | -8.615850e-47 |
| Msa0405420 | Msa0924930 | 0.855059 | 8.131938e-62 | -8.615850e-47 |
| Msa0405420 | Msa0924940 | 0.859734 | 3.369338e-63 | -8.615850e-47 |
| Msa0405420 | Msa0925100 | 0.883281 | 5.124595e-71 | -8.615850e-47 |
| Msa0405420 | Msa0925110 | 0.901960 | 1.577752e-78 | -8.615850e-47 |
| Msa0405420 | Msa0931070 | 0.802542 | 5.341130e-49 | -8.615850e-47 |
| Msa0405420 | Msa0931080 | 0.802687 | 4.983739e-49 | -8.615850e-47 |
| Msa0405420 | Msa0931130 | 0.809208 | 2.120001e-50 | -8.615850e-47 |
| Msa0405420 | Msa0931220 | 0.807869 | 4.094563e-50 | -8.615850e-47 |
| Msa0405420 | Msa0931260 | 0.816197 | 6.259987e-52 | -8.615850e-47 |
| Msa0405420 | Msa0983630 | 0.832901 | 7.255655e-56 | -8.615850e-47 |
| Msa0405420 | Msa0983640 | 0.855245 | 7.181895e-62 | -8.615850e-47 |
| Msa0405420 | Msa1022050 | 0.828975 | 6.665926e-55 | -8.615850e-47 |
| Msa0405420 | Msa1022060 | 0.855446 | 6.273075e-62 | -8.615850e-47 |
| Msa0405420 | Msa1064410 | 0.830508 | 2.822472e-55 | -8.615850e-47 |
| Msa0405420 | Msa1086080 | 0.816444 | 5.511648e-52 | -8.615850e-47 |
| Msa0405420 | Msa1086140 | 0.804572 | 2.025851e-49 | -8.615850e-47 |
| Msa0405420 | Msa1086190 | 0.816650 | 4.957842e-52 | -8.615850e-47 |
| Msa0405420 | Msa1086200 | 0.809422 | 1.907619e-50 | -8.615850e-47 |
| Msa0405420 | Msa1086270 | 0.816193 | 6.273410e-52 | -8.615850e-47 |
| Msa0405420 | Msa1086550 | 0.871742 | 5.420924e-67 | -8.615850e-47 |
| Msa0405420 | Msa1086590 | 0.823613 | 1.260514e-53 | -8.615850e-47 |
| Msa0405420 | Msa1086600 | 0.862314 | 5.531990e-64 | -8.615850e-47 |
| Msa0405420 | Msa1086720 | 0.866424 | 2.880674e-65 | -8.615850e-47 |
| Msa0405420 | Msa1086730 | 0.829106 | 6.195643e-55 | -8.615850e-47 |
| Msa0405420 | Msa1086740 | 0.864387 | 1.260962e-64 | -8.615850e-47 |
| Msa0405420 | Msa1086790 | 0.847902 | 8.619841e-60 | -8.615850e-47 |
| Msa0405420 | Msa1086800 | 0.855737 | 5.160694e-62 | -8.615850e-47 |
| Msa0405420 | Msa1086890 | 0.818506 | 1.892095e-52 | -8.615850e-47 |
| Msa0405420 | Msa1086960 | 0.867443 | 1.363208e-65 | -8.615850e-47 |
| Msa0405420 | Msa1086970 | 0.830028 | 3.698215e-55 | -8.615850e-47 |
| Msa0405420 | Msa1087030 | 0.877665 | 5.237563e-69 | -8.615850e-47 |
| Msa0405420 | Msa1087040 | 0.847488 | 1.120651e-59 | -8.615850e-47 |
| Msa0405420 | Msa1087050 | 0.866761 | 2.251374e-65 | -8.615850e-47 |
| Msa0405420 | Msa1087110 | 0.850970 | 1.202846e-60 | -8.615850e-47 |
| Msa0405420 | Msa1087120 | 0.847788 | 9.263560e-60 | -8.615850e-47 |
| Msa0405420 | Msa1143120 | 0.814623 | 1.402316e-51 | -8.615850e-47 |
| Msa0405420 | Msa1143160 | 0.800324 | 1.520458e-48 | -8.615850e-47 |
| Msa0405420 | Msa1143170 | 0.800887 | 1.167257e-48 | -8.615850e-47 |
| Msa0405420 | Msa1305090 | 0.806168 | 9.376223e-50 | -8.615850e-47 |
| Msa0405420 | Msa1342040 | 0.817576 | 3.070352e-52 | -8.615850e-47 |
| Msa0405420 | Msa1354420 | 0.842935 | 1.907890e-58 | -8.615850e-47 |
| Msa0405420 | Msa1354430 | 0.870538 | 1.352743e-66 | -8.615850e-47 |
| Msa0405420 | Msa1354480 | 0.853100 | 2.986885e-61 | -8.615850e-47 |
| Msa0405420 | Msa1354490 | 0.819256 | 1.278105e-52 | -8.615850e-47 |
| Msa0405420 | Msa1354500 | 0.866477 | 2.771299e-65 | -8.615850e-47 |
| Msa0405420 | Msa1354550 | 0.850200 | 1.980109e-60 | -8.615850e-47 |
| Msa0405420 | Msa1354560 | 0.861053 | 1.344272e-63 | -8.615850e-47 |
| Msa0405420 | Msa1354610 | 0.869510 | 2.932899e-66 | -8.615850e-47 |
| Msa0405420 | Msa1354620 | 0.840076 | 1.081082e-57 | -8.615850e-47 |
| Msa0405420 | Msa1354630 | 0.866616 | 2.502996e-65 | -8.615850e-47 |
| Msa0405420 | Msa1354680 | 0.850912 | 1.249414e-60 | -8.615850e-47 |
| Msa0405420 | Msa1354690 | 0.824705 | 6.983316e-54 | -8.615850e-47 |
| Msa0405420 | Msa1354700 | 0.848823 | 4.795317e-60 | -8.615850e-47 |
| Msa0405420 | Msa1354740 | 0.877988 | 4.038459e-69 | -8.615850e-47 |
| Msa0405420 | Msa1354750 | 0.847169 | 1.370462e-59 | -8.615850e-47 |
| Msa0405420 | Msa1354760 | 0.859998 | 2.805304e-63 | -8.615850e-47 |
| Msa0405420 | Msa1354810 | 0.850277 | 1.884768e-60 | -8.615850e-47 |
| Msa0405420 | Msa1354820 | 0.869431 | 3.112250e-66 | -8.615850e-47 |
| Msa0405420 | Msa1354920 | 0.800175 | 1.629991e-48 | -8.615850e-47 |
| Msa0405420 | Msa1354980 | 0.863752 | 1.989663e-64 | -8.615850e-47 |
| Msa0405420 | Msa1354990 | 0.852262 | 5.180864e-61 | -8.615850e-47 |
| Msa0405420 | Msa1355080 | 0.805495 | 1.298726e-49 | -8.615850e-47 |
| Msa0405420 | Msa1365890 | 0.846385 | 2.244972e-59 | -8.615850e-47 |
| Msa0405420 | Msa1365900 | 0.830388 | 3.019958e-55 | -8.615850e-47 |
| Msa0405420 | Msa1365950 | 0.864747 | 9.730715e-65 | -8.615850e-47 |
| Msa0405420 | Msa1365960 | 0.825761 | 3.929525e-54 | -8.615850e-47 |
| Msa0405420 | Msa1365970 | 0.858653 | 7.105678e-63 | -8.615850e-47 |
| Msa0405420 | Msa1366080 | 0.862955 | 3.510755e-64 | -8.615850e-47 |
| Msa0405420 | Msa1366090 | 0.846188 | 2.540193e-59 | -8.615850e-47 |
| Msa0405420 | Msa1368230 | 0.844558 | 7.016449e-59 | -8.615850e-47 |
| Msa0405420 | Msa1368240 | 0.826682 | 2.372220e-54 | -8.615850e-47 |
| Msa0405420 | Msa1380610 | 0.810150 | 1.329716e-50 | -8.615850e-47 |
| Msa0405420 | Msa1385410 | 0.845248 | 4.571676e-59 | -8.615850e-47 |
| Msa0405420 | Msa1385420 | 0.833416 | 5.400179e-56 | -8.615850e-47 |
| Msa0405420 | Msa1391090 | 0.854338 | 1.315508e-61 | -8.615850e-47 |
| Msa0405420 | Msa1391100 | 0.811328 | 7.395498e-51 | -8.615850e-47 |
| Msa0405420 | Msa1391110 | 0.837464 | 5.120231e-57 | -8.615850e-47 |
| Msa0405420 | Msa1391160 | 0.841126 | 5.739656e-58 | -8.615850e-47 |
| Msa0405420 | Msa1391170 | 0.836560 | 8.712580e-57 | -8.615850e-47 |
| Msa0405420 | Msa1391220 | 0.847211 | 1.335215e-59 | -8.615850e-47 |
| Msa0405420 | Msa1391230 | 0.829628 | 4.628202e-55 | -8.615850e-47 |
| Msa0405420 | Msa1391240 | 0.848630 | 5.422082e-60 | -8.615850e-47 |
| Msa0405420 | Msa1394030 | 0.806130 | 9.552759e-50 | -8.615850e-47 |
| Msa0405420 | Msa1394040 | 0.802536 | 5.355555e-49 | -8.615850e-47 |
| Msa0405420 | Msa1394150 | 0.805393 | 1.363947e-49 | -8.615850e-47 |
| Msa0405420 | Msa1394210 | 0.806726 | 7.149987e-50 | -8.615850e-47 |
| Msa0405420 | Msa1460120 | 0.874345 | 7.259573e-68 | -8.615850e-47 |
| Msa0405420 | Msa1460130 | 0.912626 | 1.569774e-83 | -8.615850e-47 |
| Msa0263770 | Msa0405420 | 0.859626 | 3.631169e-63 | -8.615850e-47 |
| Msa0268250 | Msa0405420 | 0.839571 | 1.463188e-57 | -8.615850e-47 |
| Msa0268260 | Msa0405420 | 0.827528 | 1.488447e-54 | -8.615850e-47 |
| Msa0268270 | Msa0405420 | 0.849554 | 3.000654e-60 | -8.615850e-47 |
| Msa0268300 | Msa0405420 | 0.845785 | 3.269250e-59 | -8.615850e-47 |
| Msa0268310 | Msa0405420 | 0.850885 | 1.271114e-60 | -8.615850e-47 |
| Msa0268390 | Msa0405420 | 0.807595 | 4.680323e-50 | -8.615850e-47 |
| Msa0268400 | Msa0405420 | 0.804061 | 2.588420e-49 | -8.615850e-47 |
| Msa0268580 | Msa0405420 | 0.801167 | 1.023307e-48 | -8.615850e-47 |
| Msa0268630 | Msa0405420 | 0.816726 | 4.767418e-52 | -8.615850e-47 |
| Msa0268740 | Msa0405420 | 0.807835 | 4.161956e-50 | -8.615850e-47 |
| Msa0268830 | Msa0405420 | 0.803202 | 3.900356e-49 | -8.615850e-47 |
| Msa0268950 | Msa0405420 | 0.825625 | 4.233469e-54 | -8.615850e-47 |
| Msa0268960 | Msa0405420 | 0.822231 | 2.646090e-53 | -8.615850e-47 |
| Msa0269040 | Msa0405420 | 0.809398 | 1.930133e-50 | -8.615850e-47 |
| Msa0269130 | Msa0405420 | 0.860373 | 2.160535e-63 | -8.615850e-47 |
| Msa0269140 | Msa0405420 | 0.832234 | 1.061893e-55 | -8.615850e-47 |
| Msa0269150 | Msa0405420 | 0.848530 | 5.779994e-60 | -8.615850e-47 |
| Msa0344190 | Msa0405420 | 0.808787 | 2.608954e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405420 | MtrunA17_Chr1g0195541 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 9.75e-90 | 265 |
| Msa0405420 | MtrunA17_CPg0492431 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405420 | MtrunA17_Chr3g0090851 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405420 | MtrunA17_Chr4g0016091 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405420 | MtrunA17_CPg0492451 | 99.130 | 115 | 1 | 0 | 191 | 305 | 1 | 115 | 1.40e-74 | 227 |
| Msa0405420 | MtrunA17_Chr4g0016071 | 99.130 | 115 | 1 | 0 | 191 | 305 | 1 | 115 | 1.40e-74 | 227 |
| Msa0405420 | MtrunA17_Chr3g0090871 | 97.248 | 109 | 3 | 0 | 191 | 299 | 1 | 109 | 3.58e-69 | 213 |
| Msa0405420 | MtrunA17_Chr1g0153231 | 97.297 | 74 | 2 | 0 | 58 | 131 | 1 | 74 | 5.31e-45 | 147 |
| Msa0405420 | MtrunA17_Chr0c03g0489881 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 1.78e-21 | 90.5 |
| Msa0405420 | MtrunA17_MTg0491931 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 1.78e-21 | 90.5 |
| Msa0405420 | MtrunA17_CPg0492181 | 25.574 | 305 | 204 | 8 | 6 | 301 | 147 | 437 | 7.39e-17 | 80.9 |
| Msa0405420 | MtrunA17_Chr4g0000831 | 25.210 | 238 | 160 | 7 | 6 | 239 | 32 | 255 | 4.98e-14 | 71.2 |
| Msa0405420 | MtrunA17_Chr6g0466221 | 24.918 | 305 | 186 | 9 | 6 | 301 | 147 | 417 | 4.75e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405420 | ATCG00890.1 | 94.098 | 305 | 11 | 1 | 1 | 305 | 1 | 298 | 0.0 | 568 |
| Msa0405420 | ATCG01250.1 | 94.098 | 305 | 11 | 1 | 1 | 305 | 1 | 298 | 0.0 | 568 |
| Msa0405420 | AT2G07689.1 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 2.24e-21 | 90.5 |
| Msa0405420 | ATCG01010.1 | 26.490 | 302 | 199 | 8 | 9 | 301 | 130 | 417 | 2.70e-16 | 79.7 |
Find 66 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGATATGTAATTAT+TGG | 0.189063 | 3_2:-40184482 | Msa0405420:CDS |
| CATGGTTTCTCTTGGCTATA+TGG | 0.197078 | 3_2:-40185575 | Msa0405420:CDS |
| TGGGGCAAGCTCTTCTATTC+TGG | 0.197255 | 3_2:-40185600 | Msa0405420:CDS |
| GCTATTCTTAGCATGCTATT+AGG | 0.213688 | 3_2:-40184566 | Msa0405420:CDS |
| TTTGCTTGCATTGTGTTATT+TGG | 0.223841 | 3_2:-40184377 | Msa0405420:CDS |
| ATTAGACCGTACATCTTTCT+TGG | 0.278852 | 3_2:+40185652 | None:intergenic |
| ATATTCATCACTGTAGGAAT+TGG | 0.280413 | 3_2:-40185461 | Msa0405420:CDS |
| TCGTTTGATGAGAAATAAAA+AGG | 0.282633 | 3_2:+40184614 | None:intergenic |
| AGCTCTTCTATTCTGGTTCA+TGG | 0.287942 | 3_2:-40185593 | Msa0405420:CDS |
| CTATTCTTAGCATGCTATTA+GGG | 0.301257 | 3_2:-40184565 | Msa0405420:CDS |
| TATTCGTCCATAGGTCAAAT+TGG | 0.303171 | 3_2:-40184497 | Msa0405420:CDS |
| GCATACGTTTCATGCTTGTT+TGG | 0.326865 | 3_2:+40184525 | None:intergenic |
| TTCTGGTTCATGGTTTCTCT+TGG | 0.336946 | 3_2:-40185583 | Msa0405420:CDS |
| TTATGCTCCTATCTACTATC+TGG | 0.367530 | 3_2:-40185680 | Msa0405420:CDS |
| CATACGTTTCATGCTTGTTT+GGG | 0.369828 | 3_2:+40184526 | None:intergenic |
| GTAATTATTGGAATAATTGT+TGG | 0.373428 | 3_2:-40184470 | Msa0405420:CDS |
| CCCTAGCCCCTTCTCATCAA+TGG | 0.393307 | 3_2:-40185427 | Msa0405420:CDS |
| GTGTTATTTGGTCTACGTAC+TGG | 0.413420 | 3_2:-40184365 | Msa0405420:CDS |
| TATTCATCACTGTAGGAATT+GGG | 0.417349 | 3_2:-40185460 | Msa0405420:CDS |
| TCTTGGCTATATGGTTCGTC+CGG | 0.418558 | 3_2:-40185566 | Msa0405420:CDS |
| TACATATCCAATTTGACCTA+TGG | 0.420081 | 3_2:+40184490 | None:intergenic |
| GCCCTATGTCTATTATCCTT+AGG | 0.440840 | 3_2:-40184278 | Msa0405420:CDS |
| GGAGGTCTTCCTCCACTAGC+AGG | 0.443104 | 3_2:-40184257 | Msa0405420:CDS |
| AGCAAAAGTTCCTAGATTCA+TGG | 0.448640 | 3_2:+40184394 | None:intergenic |
| TTCTATATCTCCATGAATCT+AGG | 0.460861 | 3_2:-40184404 | Msa0405420:CDS |
| CTTGGCTATATGGTTCGTCC+GGG | 0.468938 | 3_2:-40185565 | Msa0405420:CDS |
| TACTATGAAATATTTACTCA+TGG | 0.474204 | 3_2:-40185624 | Msa0405420:CDS |
| GGTATATCCAGATAGTAGAT+AGG | 0.488329 | 3_2:+40185673 | None:intergenic |
| ATAAGCGCAATTGAAATTCC+AGG | 0.496050 | 3_2:+40185482 | None:intergenic |
| TGAAATATTTACTCATGGGT+GGG | 0.506663 | 3_2:-40185619 | Msa0405420:CDS |
| TCCATTGATGAGAAGGGGCT+AGG | 0.510524 | 3_2:+40185426 | None:intergenic |
| ATGCTTGCTTATTCGTCCAT+AGG | 0.517225 | 3_2:-40184506 | Msa0405420:CDS |
| TTGAAGCTCTATCTCTCCCC+CGG | 0.517737 | 3_2:+40185547 | None:intergenic |
| TTTATTTCTCATCAAACGAA+TGG | 0.522523 | 3_2:-40184610 | Msa0405420:CDS |
| ACACAAATGTATAACTCCCC+TGG | 0.530663 | 3_2:-40185500 | Msa0405420:CDS |
| GATAACATTCGAGATTATGC+AGG | 0.531827 | 3_2:-40184338 | Msa0405420:CDS |
| ATGAAATATTTACTCATGGG+TGG | 0.533610 | 3_2:-40185620 | Msa0405420:CDS |
| GAAATATTTACTCATGGGTG+GGG | 0.537789 | 3_2:-40185618 | Msa0405420:CDS |
| CAGGAGTCCATTGATGAGAA+GGG | 0.542754 | 3_2:+40185420 | None:intergenic |
| GAGCTTCAAGAAATAGTGAA+TGG | 0.546870 | 3_2:-40185533 | Msa0405420:CDS |
| ATAATTGTTGGAGACTCAAA+TGG | 0.548093 | 3_2:-40184458 | Msa0405420:CDS |
| TCAGGAGTCCATTGATGAGA+AGG | 0.551074 | 3_2:+40185419 | None:intergenic |
| AGAAAAGCAACGACTGGAGT+CGG | 0.551106 | 3_2:+40184692 | None:intergenic |
| CCATTGATGAGAAGGGGCTA+GGG | 0.552174 | 3_2:+40185427 | None:intergenic |
| TTCATATTAACCGCTACTCT+AGG | 0.552302 | 3_2:-40185767 | Msa0405420:CDS |
| TCCTAAGGATAATAGACATA+GGG | 0.556597 | 3_2:+40184277 | None:intergenic |
| CTCCTAAGGATAATAGACAT+AGG | 0.558738 | 3_2:+40184276 | None:intergenic |
| GAAAGATGTACGGTCTAATG+AGG | 0.565206 | 3_2:-40185648 | Msa0405420:CDS |
| TAAGCGCAATTGAAATTCCA+GGG | 0.565360 | 3_2:+40185483 | None:intergenic |
| GGAGAGTCAGAGTCGAAAAG+AGG | 0.572366 | 3_2:+40184713 | None:intergenic |
| TGGCTATATGGTTCGTCCGG+GGG | 0.574450 | 3_2:-40185563 | Msa0405420:CDS |
| ATAGCATGCTAAGAATAGCT+AGG | 0.576533 | 3_2:+40184570 | None:intergenic |
| TAGTGGAGGAAGACCTCCTA+AGG | 0.577052 | 3_2:+40184262 | None:intergenic |
| ACAGAAAGAAAAGCAACGAC+TGG | 0.577795 | 3_2:+40184686 | None:intergenic |
| TTGGCTATATGGTTCGTCCG+GGG | 0.582473 | 3_2:-40185564 | Msa0405420:CDS |
| ACTATGAAATATTTACTCAT+GGG | 0.584827 | 3_2:-40185623 | Msa0405420:CDS |
| CTATGTCTATTATCCTTAGG+AGG | 0.590927 | 3_2:-40184275 | Msa0405420:CDS |
| GCGCTTATATTCATCACTGT+AGG | 0.594447 | 3_2:-40185467 | Msa0405420:CDS |
| TTGAATGAGAGAAAGAAGTG+AGG | 0.599130 | 3_2:-40184739 | Msa0405420:intron |
| ATATTAACCGCTACTCTAGG+AGG | 0.609728 | 3_2:-40185764 | Msa0405420:CDS |
| GATATACCAAGAAAGATGTA+CGG | 0.625842 | 3_2:-40185658 | Msa0405420:CDS |
| ATTGTTGGAGACTCAAATGG+TGG | 0.626325 | 3_2:-40184455 | Msa0405420:CDS |
| AGGAGTCCATTGATGAGAAG+GGG | 0.632944 | 3_2:+40185421 | None:intergenic |
| AGGAATATCGAAAATTCGAG+TGG | 0.650147 | 3_2:+40184634 | None:intergenic |
| AAACATTCCTCCTAGAGTAG+CGG | 0.663526 | 3_2:+40185757 | None:intergenic |
| AAGCGCAATTGAAATTCCAG+GGG | 0.720091 | 3_2:+40185484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTTAAAATAACAATTA+AGG | - | chr3_2:40184757-40184776 | Msa0405420:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | - | chr3_2:40185070-40185089 | Msa0405420:intron | 15.0% |
| !!! | ACTTGTTAAAATAACAATTA+AGG | - | chr3_2:40184757-40184776 | Msa0405420:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | - | chr3_2:40185070-40185089 | Msa0405420:intron | 15.0% |
| !! | TACTATGAAATATTTACTCA+TGG | - | chr3_2:40184396-40184415 | Msa0405420:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | - | chr3_2:40184397-40184416 | Msa0405420:CDS | 20.0% |
| !! | TAACAAGTAAAGTTATGTAT+TGG | + | chr3_2:40184745-40184764 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | - | chr3_2:40184826-40184845 | Msa0405420:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | + | chr3_2:40185147-40185166 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | - | chr3_2:40185147-40185166 | Msa0405420:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | - | chr3_2:40185538-40185557 | Msa0405420:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | - | chr3_2:40185550-40185569 | Msa0405420:CDS | 20.0% |
| !! | TACTATGAAATATTTACTCA+TGG | - | chr3_2:40184396-40184415 | Msa0405420:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | - | chr3_2:40184397-40184416 | Msa0405420:CDS | 20.0% |
| !! | TAACAAGTAAAGTTATGTAT+TGG | + | chr3_2:40184745-40184764 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | - | chr3_2:40184826-40184845 | Msa0405420:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | + | chr3_2:40185147-40185166 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | - | chr3_2:40185147-40185166 | Msa0405420:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | - | chr3_2:40185538-40185557 | Msa0405420:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | - | chr3_2:40185550-40185569 | Msa0405420:CDS | 20.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | - | chr3_2:40184686-40184705 | Msa0405420:CDS | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | - | chr3_2:40184827-40184846 | Msa0405420:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | + | chr3_2:40184858-40184877 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | + | chr3_2:40184886-40184905 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | - | chr3_2:40185153-40185172 | Msa0405420:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | + | chr3_2:40185222-40185241 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | - | chr3_2:40185226-40185245 | Msa0405420:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | + | chr3_2:40185409-40185428 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | - | chr3_2:40185410-40185429 | Msa0405420:intron | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | - | chr3_2:40185708-40185727 | Msa0405420:CDS | 25.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | - | chr3_2:40184686-40184705 | Msa0405420:CDS | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | - | chr3_2:40184827-40184846 | Msa0405420:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | + | chr3_2:40184858-40184877 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | + | chr3_2:40184886-40184905 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | - | chr3_2:40185153-40185172 | Msa0405420:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | + | chr3_2:40185222-40185241 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | - | chr3_2:40185226-40185245 | Msa0405420:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | + | chr3_2:40185409-40185428 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | - | chr3_2:40185410-40185429 | Msa0405420:intron | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | - | chr3_2:40185708-40185727 | Msa0405420:CDS | 25.0% |
| GATATACCAAGAAAGATGTA+CGG | - | chr3_2:40184362-40184381 | Msa0405420:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | - | chr3_2:40184400-40184419 | Msa0405420:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | - | chr3_2:40184401-40184420 | Msa0405420:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | - | chr3_2:40184559-40184578 | Msa0405420:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | - | chr3_2:40184560-40184579 | Msa0405420:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | - | chr3_2:40184667-40184686 | Msa0405420:CDS | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | + | chr3_2:40184932-40184951 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | - | chr3_2:40184932-40184951 | Msa0405420:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | - | chr3_2:40185032-40185051 | Msa0405420:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | - | chr3_2:40185455-40185474 | Msa0405420:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | + | chr3_2:40185533-40185552 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | - | chr3_2:40185562-40185581 | Msa0405420:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | - | chr3_2:40185616-40185635 | Msa0405420:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | - | chr3_2:40185643-40185662 | Msa0405420:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | + | chr3_2:40185746-40185765 | None:intergenic | 30.0% | |
| GATATACCAAGAAAGATGTA+CGG | - | chr3_2:40184362-40184381 | Msa0405420:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | - | chr3_2:40184400-40184419 | Msa0405420:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | - | chr3_2:40184401-40184420 | Msa0405420:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | - | chr3_2:40184559-40184578 | Msa0405420:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | - | chr3_2:40184560-40184579 | Msa0405420:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | - | chr3_2:40184667-40184686 | Msa0405420:CDS | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | + | chr3_2:40184932-40184951 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | - | chr3_2:40184932-40184951 | Msa0405420:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | - | chr3_2:40185032-40185051 | Msa0405420:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | - | chr3_2:40185455-40185474 | Msa0405420:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | + | chr3_2:40185533-40185552 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | - | chr3_2:40185562-40185581 | Msa0405420:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | - | chr3_2:40185616-40185635 | Msa0405420:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | - | chr3_2:40185643-40185662 | Msa0405420:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | + | chr3_2:40185746-40185765 | None:intergenic | 30.0% | |
| TTCATATTAACCGCTACTCT+AGG | - | chr3_2:40184253-40184272 | Msa0405420:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | - | chr3_2:40184340-40184359 | Msa0405420:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | + | chr3_2:40184350-40184369 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | + | chr3_2:40184371-40184390 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | - | chr3_2:40184402-40184421 | Msa0405420:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | - | chr3_2:40184487-40184506 | Msa0405420:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | + | chr3_2:40184540-40184559 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | + | chr3_2:40184541-40184560 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | + | chr3_2:40184661-40184680 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | + | chr3_2:40184665-40184684 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | - | chr3_2:40184799-40184818 | Msa0405420:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | + | chr3_2:40184809-40184828 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | + | chr3_2:40184834-40184853 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | - | chr3_2:40184899-40184918 | Msa0405420:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | - | chr3_2:40185004-40185023 | Msa0405420:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | + | chr3_2:40185040-40185059 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | - | chr3_2:40185041-40185060 | Msa0405420:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | + | chr3_2:40185060-40185079 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | - | chr3_2:40185281-40185300 | Msa0405420:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | + | chr3_2:40185389-40185408 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | + | chr3_2:40185453-40185472 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | - | chr3_2:40185454-40185473 | Msa0405420:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | + | chr3_2:40185497-40185516 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | - | chr3_2:40185523-40185542 | Msa0405420:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | + | chr3_2:40185629-40185648 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | - | chr3_2:40185682-40185701 | Msa0405420:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | + | chr3_2:40185747-40185766 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | - | chr3_2:40185745-40185764 | Msa0405420:CDS | 35.0% | |
| TTCATATTAACCGCTACTCT+AGG | - | chr3_2:40184253-40184272 | Msa0405420:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | - | chr3_2:40184340-40184359 | Msa0405420:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | + | chr3_2:40184350-40184369 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | + | chr3_2:40184371-40184390 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | - | chr3_2:40184402-40184421 | Msa0405420:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | - | chr3_2:40184487-40184506 | Msa0405420:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | + | chr3_2:40184540-40184559 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | + | chr3_2:40184541-40184560 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | + | chr3_2:40184661-40184680 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | + | chr3_2:40184665-40184684 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | - | chr3_2:40184799-40184818 | Msa0405420:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | + | chr3_2:40184809-40184828 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | + | chr3_2:40184834-40184853 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | - | chr3_2:40184899-40184918 | Msa0405420:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | - | chr3_2:40185004-40185023 | Msa0405420:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | + | chr3_2:40185040-40185059 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | - | chr3_2:40185041-40185060 | Msa0405420:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | + | chr3_2:40185060-40185079 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | - | chr3_2:40185281-40185300 | Msa0405420:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | + | chr3_2:40185389-40185408 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | + | chr3_2:40185453-40185472 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | - | chr3_2:40185454-40185473 | Msa0405420:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | + | chr3_2:40185497-40185516 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | - | chr3_2:40185523-40185542 | Msa0405420:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | + | chr3_2:40185629-40185648 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | - | chr3_2:40185682-40185701 | Msa0405420:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | + | chr3_2:40185747-40185766 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | - | chr3_2:40185745-40185764 | Msa0405420:CDS | 35.0% | |
| ATATTAACCGCTACTCTAGG+AGG | - | chr3_2:40184256-40184275 | Msa0405420:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | + | chr3_2:40184266-40184285 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | - | chr3_2:40184372-40184391 | Msa0405420:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | - | chr3_2:40184427-40184446 | Msa0405420:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | - | chr3_2:40184437-40184456 | Msa0405420:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | - | chr3_2:40184445-40184464 | Msa0405420:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | - | chr3_2:40184520-40184539 | Msa0405420:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | + | chr3_2:40184539-40184558 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | - | chr3_2:40184553-40184572 | Msa0405420:CDS | 40.0% | |
| ! | AGTTATGTATTGGTCCGAGT+GGG | + | chr3_2:40184735-40184754 | None:intergenic | 40.0% |
| ! | AAGTTATGTATTGGTCCGAG+TGG | + | chr3_2:40184736-40184755 | None:intergenic | 40.0% |
| AATTAAGGTGAAGCAGAGTC+AGG | - | chr3_2:40184772-40184791 | Msa0405420:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | - | chr3_2:40184800-40184819 | Msa0405420:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | + | chr3_2:40184808-40184827 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | + | chr3_2:40184963-40184982 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | + | chr3_2:40184981-40185000 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | + | chr3_2:40184982-40185001 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | - | chr3_2:40185093-40185112 | Msa0405420:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | - | chr3_2:40185112-40185131 | Msa0405420:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | - | chr3_2:40185118-40185137 | Msa0405420:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | + | chr3_2:40185122-40185141 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | + | chr3_2:40185337-40185356 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | + | chr3_2:40185498-40185517 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | - | chr3_2:40185514-40185533 | Msa0405420:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | - | chr3_2:40185565-40185584 | Msa0405420:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | - | chr3_2:40185655-40185674 | Msa0405420:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | + | chr3_2:40185724-40185743 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | - | chr3_2:40185742-40185761 | Msa0405420:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | + | chr3_2:40185778-40185797 | None:intergenic | 40.0% | |
| ATATTAACCGCTACTCTAGG+AGG | - | chr3_2:40184256-40184275 | Msa0405420:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | + | chr3_2:40184266-40184285 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | - | chr3_2:40184372-40184391 | Msa0405420:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | - | chr3_2:40184427-40184446 | Msa0405420:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | - | chr3_2:40184437-40184456 | Msa0405420:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | - | chr3_2:40184445-40184464 | Msa0405420:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | - | chr3_2:40184520-40184539 | Msa0405420:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | + | chr3_2:40184539-40184558 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | - | chr3_2:40184553-40184572 | Msa0405420:CDS | 40.0% | |
| ! | AGTTATGTATTGGTCCGAGT+GGG | + | chr3_2:40184735-40184754 | None:intergenic | 40.0% |
| ! | AAGTTATGTATTGGTCCGAG+TGG | + | chr3_2:40184736-40184755 | None:intergenic | 40.0% |
| AATTAAGGTGAAGCAGAGTC+AGG | - | chr3_2:40184772-40184791 | Msa0405420:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | - | chr3_2:40184800-40184819 | Msa0405420:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | + | chr3_2:40184808-40184827 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | + | chr3_2:40184963-40184982 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | + | chr3_2:40184981-40185000 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | + | chr3_2:40184982-40185001 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | - | chr3_2:40185093-40185112 | Msa0405420:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | - | chr3_2:40185112-40185131 | Msa0405420:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | - | chr3_2:40185118-40185137 | Msa0405420:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | + | chr3_2:40185122-40185141 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | + | chr3_2:40185337-40185356 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | + | chr3_2:40185498-40185517 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | - | chr3_2:40185514-40185533 | Msa0405420:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | - | chr3_2:40185565-40185584 | Msa0405420:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | - | chr3_2:40185655-40185674 | Msa0405420:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | + | chr3_2:40185724-40185743 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | - | chr3_2:40185742-40185761 | Msa0405420:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | + | chr3_2:40185778-40185797 | None:intergenic | 40.0% | |
| TCTTGGCTATATGGTTCGTC+CGG | - | chr3_2:40184454-40184473 | Msa0405420:CDS | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | + | chr3_2:40184602-40184621 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | + | chr3_2:40184603-40184622 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | + | chr3_2:40184604-40184623 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | - | chr3_2:40184613-40184632 | Msa0405420:CDS | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | - | chr3_2:40184620-40184639 | Msa0405420:CDS | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | - | chr3_2:40184718-40184737 | Msa0405420:CDS | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | - | chr3_2:40184787-40184806 | Msa0405420:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | - | chr3_2:40184951-40184970 | Msa0405420:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | + | chr3_2:40185106-40185125 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | - | chr3_2:40185171-40185190 | Msa0405420:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | - | chr3_2:40185175-40185194 | Msa0405420:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | + | chr3_2:40185254-40185273 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | - | chr3_2:40185256-40185275 | Msa0405420:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | + | chr3_2:40185331-40185350 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | - | chr3_2:40185772-40185791 | Msa0405420:CDS | 45.0% |
| TCTTGGCTATATGGTTCGTC+CGG | - | chr3_2:40184454-40184473 | Msa0405420:CDS | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | + | chr3_2:40184602-40184621 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | + | chr3_2:40184603-40184622 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | + | chr3_2:40184604-40184623 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | - | chr3_2:40184613-40184632 | Msa0405420:CDS | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | - | chr3_2:40184620-40184639 | Msa0405420:CDS | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | - | chr3_2:40184718-40184737 | Msa0405420:CDS | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | - | chr3_2:40184787-40184806 | Msa0405420:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | - | chr3_2:40184951-40184970 | Msa0405420:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | + | chr3_2:40185106-40185125 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | - | chr3_2:40185171-40185190 | Msa0405420:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | - | chr3_2:40185175-40185194 | Msa0405420:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | + | chr3_2:40185254-40185273 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | - | chr3_2:40185256-40185275 | Msa0405420:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | + | chr3_2:40185331-40185350 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | - | chr3_2:40185772-40185791 | Msa0405420:CDS | 45.0% |
| TGGGGCAAGCTCTTCTATTC+TGG | - | chr3_2:40184420-40184439 | Msa0405420:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | - | chr3_2:40184455-40184474 | Msa0405420:CDS | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | - | chr3_2:40184456-40184475 | Msa0405420:CDS | 50.0% | |
| TTGAAGCTCTATCTCTCCCC+CGG | + | chr3_2:40184476-40184495 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | + | chr3_2:40184596-40184615 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | + | chr3_2:40184597-40184616 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | + | chr3_2:40184622-40184641 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | + | chr3_2:40185052-40185071 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | + | chr3_2:40185310-40185329 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | + | chr3_2:40185761-40185780 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | + | chr3_2:40185775-40185794 | None:intergenic | 50.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | - | chr3_2:40184420-40184439 | Msa0405420:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | - | chr3_2:40184455-40184474 | Msa0405420:CDS | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | - | chr3_2:40184456-40184475 | Msa0405420:CDS | 50.0% | |
| TTGAAGCTCTATCTCTCCCC+CGG | + | chr3_2:40184476-40184495 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | + | chr3_2:40184596-40184615 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | + | chr3_2:40184597-40184616 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | + | chr3_2:40184622-40184641 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | + | chr3_2:40185052-40185071 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | + | chr3_2:40185310-40185329 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | + | chr3_2:40185761-40185780 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | + | chr3_2:40185775-40185794 | None:intergenic | 50.0% | |
| TGGCTATATGGTTCGTCCGG+GGG | - | chr3_2:40184457-40184476 | Msa0405420:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | - | chr3_2:40184593-40184612 | Msa0405420:CDS | 55.0% | |
| TGGCTATATGGTTCGTCCGG+GGG | - | chr3_2:40184457-40184476 | Msa0405420:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | - | chr3_2:40184593-40184612 | Msa0405420:CDS | 55.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | - | chr3_2:40185763-40185782 | Msa0405420:CDS | 60.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | - | chr3_2:40185763-40185782 | Msa0405420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 40184229 | 40185813 | 40184229 | ID=Msa0405420;Name=Msa0405420 |
| chr3_2 | mRNA | 40184229 | 40185813 | 40184229 | ID=Msa0405420-mRNA-1;Parent=Msa0405420;Name=Msa0405420-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.5|1|1|2|0|305 |
| chr3_2 | exon | 40185418 | 40185813 | 40185418 | ID=Msa0405420-mRNA-1:exon:7788;Parent=Msa0405420-mRNA-1 |
| chr3_2 | exon | 40184229 | 40184750 | 40184229 | ID=Msa0405420-mRNA-1:exon:7787;Parent=Msa0405420-mRNA-1 |
| chr3_2 | CDS | 40185418 | 40185813 | 40185418 | ID=Msa0405420-mRNA-1:cds;Parent=Msa0405420-mRNA-1 |
| chr3_2 | CDS | 40184229 | 40184750 | 40184229 | ID=Msa0405420-mRNA-1:cds;Parent=Msa0405420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
