Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405530 | AES79107.1 | 77.215 | 158 | 28 | 2 | 1 | 152 | 40 | 195 | 7.30e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405530 | sp|A4GYN8|RR12B_POPTR | 94.845 | 97 | 5 | 0 | 56 | 152 | 39 | 135 | 4.79e-60 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405530 | G7L078 | 77.215 | 158 | 28 | 2 | 1 | 152 | 40 | 195 | 3.48e-74 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126750 | Msa0405530 | 0.806977 | 6.329861e-50 | -8.615850e-47 |
| Msa0202640 | Msa0405530 | 0.837109 | 6.309557e-57 | -8.615850e-47 |
| Msa0405420 | Msa0405530 | 0.864502 | 1.161199e-64 | -8.615850e-47 |
| Msa0405430 | Msa0405530 | 0.856449 | 3.194328e-62 | -8.615850e-47 |
| Msa0405440 | Msa0405530 | 0.939307 | 1.583807e-99 | -8.615850e-47 |
| Msa0405510 | Msa0405530 | 0.855535 | 5.909961e-62 | -8.615850e-47 |
| Msa0405520 | Msa0405530 | 0.836385 | 9.655117e-57 | -8.615850e-47 |
| Msa0405530 | Msa0484040 | 0.810601 | 1.063079e-50 | -8.615850e-47 |
| Msa0405530 | Msa0582510 | 0.823473 | 1.359040e-53 | -8.615850e-47 |
| Msa0405530 | Msa0582650 | 0.823548 | 1.305493e-53 | -8.615850e-47 |
| Msa0405530 | Msa0582690 | 0.827361 | 1.631944e-54 | -8.615850e-47 |
| Msa0405530 | Msa0582770 | 0.831328 | 1.776421e-55 | -8.615850e-47 |
| Msa0405530 | Msa0582810 | 0.832396 | 9.680272e-56 | -8.615850e-47 |
| Msa0405530 | Msa0582920 | 0.838467 | 2.826433e-57 | -8.615850e-47 |
| Msa0405530 | Msa0591290 | 0.806760 | 7.035189e-50 | -8.615850e-47 |
| Msa0405530 | Msa0591310 | 0.857679 | 1.384507e-62 | -8.615850e-47 |
| Msa0405530 | Msa0591350 | 0.897594 | 1.208677e-76 | -8.615850e-47 |
| Msa0405530 | Msa0591360 | 0.831148 | 1.967115e-55 | -8.615850e-47 |
| Msa0405530 | Msa0591380 | 0.831223 | 1.885454e-55 | -8.615850e-47 |
| Msa0405530 | Msa0867680 | 0.875143 | 3.887658e-68 | -8.615850e-47 |
| Msa0405530 | Msa0867690 | 0.851292 | 9.758542e-61 | -8.615850e-47 |
| Msa0405530 | Msa0876520 | 0.862165 | 6.148769e-64 | -8.615850e-47 |
| Msa0405530 | Msa0908220 | 0.842100 | 3.177656e-58 | -8.615850e-47 |
| Msa0405530 | Msa0908230 | 0.858888 | 6.047424e-63 | -8.615850e-47 |
| Msa0405530 | Msa0908240 | 0.940111 | 4.076730e-100 | -8.615850e-47 |
| Msa0405530 | Msa0908310 | 0.891732 | 3.034846e-74 | -8.615850e-47 |
| Msa0405530 | Msa0908320 | 0.849305 | 3.521332e-60 | -8.615850e-47 |
| Msa0405530 | Msa0908370 | 0.889526 | 2.238499e-73 | -8.615850e-47 |
| Msa0405530 | Msa0908380 | 0.835577 | 1.547166e-56 | -8.615850e-47 |
| Msa0405530 | Msa0908430 | 0.855354 | 6.672586e-62 | -8.615850e-47 |
| Msa0405530 | Msa0908440 | 0.864081 | 1.571530e-64 | -8.615850e-47 |
| Msa0405530 | Msa0908450 | 0.933171 | 2.817957e-95 | -8.615850e-47 |
| Msa0405530 | Msa0908480 | 0.848642 | 5.381943e-60 | -8.615850e-47 |
| Msa0405530 | Msa0908530 | 0.895504 | 9.000468e-76 | -8.615850e-47 |
| Msa0405530 | Msa0908540 | 0.838299 | 3.123708e-57 | -8.615850e-47 |
| Msa0405530 | Msa0908590 | 0.829916 | 3.939061e-55 | -8.615850e-47 |
| Msa0405530 | Msa0908600 | 0.829526 | 4.901559e-55 | -8.615850e-47 |
| Msa0405530 | Msa0908610 | 0.925593 | 1.486451e-90 | -8.615850e-47 |
| Msa0405530 | Msa0908650 | 0.839910 | 1.194421e-57 | -8.615850e-47 |
| Msa0405530 | Msa0908660 | 0.829111 | 6.181101e-55 | -8.615850e-47 |
| Msa0405530 | Msa0908670 | 0.929620 | 5.348497e-93 | -8.615850e-47 |
| Msa0405530 | Msa0908720 | 0.890290 | 1.126252e-73 | -8.615850e-47 |
| Msa0405530 | Msa0908730 | 0.812711 | 3.695920e-51 | -8.615850e-47 |
| Msa0405530 | Msa0911190 | 0.925701 | 1.283885e-90 | -8.615850e-47 |
| Msa0405530 | Msa0911200 | 0.851774 | 7.129860e-61 | -8.615850e-47 |
| Msa0405530 | Msa0911230 | 0.903072 | 5.058267e-79 | -8.615850e-47 |
| Msa0405530 | Msa0924830 | 0.833067 | 6.596043e-56 | -8.615850e-47 |
| Msa0405530 | Msa0924880 | 0.833885 | 4.125038e-56 | -8.615850e-47 |
| Msa0405530 | Msa0924920 | 0.871591 | 6.080177e-67 | -8.615850e-47 |
| Msa0405530 | Msa0924930 | 0.848084 | 7.679061e-60 | -8.615850e-47 |
| Msa0405530 | Msa0924940 | 0.849954 | 2.320856e-60 | -8.615850e-47 |
| Msa0405530 | Msa0925100 | 0.924956 | 3.515189e-90 | -8.615850e-47 |
| Msa0405530 | Msa0925110 | 0.883117 | 5.884314e-71 | -8.615850e-47 |
| Msa0405530 | Msa0931070 | 0.807646 | 4.565140e-50 | -8.615850e-47 |
| Msa0405530 | Msa0931110 | 0.800793 | 1.219752e-48 | -8.615850e-47 |
| Msa0405530 | Msa0931130 | 0.816807 | 4.571530e-52 | -8.615850e-47 |
| Msa0405530 | Msa0931230 | 0.824255 | 8.912946e-54 | -8.615850e-47 |
| Msa0405530 | Msa0931260 | 0.830229 | 3.302571e-55 | -8.615850e-47 |
| Msa0405530 | Msa0983630 | 0.858025 | 1.093029e-62 | -8.615850e-47 |
| Msa0405530 | Msa0983640 | 0.834603 | 2.723792e-56 | -8.615850e-47 |
| Msa0405530 | Msa1022050 | 0.875830 | 2.261917e-68 | -8.615850e-47 |
| Msa0405530 | Msa1022060 | 0.843853 | 1.085335e-58 | -8.615850e-47 |
| Msa0405530 | Msa1064410 | 0.854349 | 1.306019e-61 | -8.615850e-47 |
| Msa0405530 | Msa1086090 | 0.842444 | 2.575792e-58 | -8.615850e-47 |
| Msa0405530 | Msa1086140 | 0.814674 | 1.366074e-51 | -8.615850e-47 |
| Msa0405530 | Msa1086190 | 0.802848 | 4.617368e-49 | -8.615850e-47 |
| Msa0405530 | Msa1086200 | 0.849054 | 4.136006e-60 | -8.615850e-47 |
| Msa0405530 | Msa1086270 | 0.808558 | 2.920012e-50 | -8.615850e-47 |
| Msa0405530 | Msa1086320 | 0.811258 | 7.660036e-51 | -8.615850e-47 |
| Msa0405530 | Msa1086550 | 0.823060 | 1.696952e-53 | -8.615850e-47 |
| Msa0405530 | Msa1086600 | 0.858128 | 1.018666e-62 | -8.615850e-47 |
| Msa0405530 | Msa1086720 | 0.856084 | 4.086158e-62 | -8.615850e-47 |
| Msa0405530 | Msa1086730 | 0.863757 | 1.981747e-64 | -8.615850e-47 |
| Msa0405530 | Msa1086740 | 0.937813 | 1.880051e-98 | -8.615850e-47 |
| Msa0405530 | Msa1086790 | 0.899921 | 1.226821e-77 | -8.615850e-47 |
| Msa0405530 | Msa1086800 | 0.860131 | 2.557235e-63 | -8.615850e-47 |
| Msa0405530 | Msa1086900 | 0.834953 | 2.223819e-56 | -8.615850e-47 |
| Msa0405530 | Msa1086960 | 0.914730 | 1.359944e-84 | -8.615850e-47 |
| Msa0405530 | Msa1086970 | 0.822462 | 2.339139e-53 | -8.615850e-47 |
| Msa0405530 | Msa1087030 | 0.856839 | 2.452557e-62 | -8.615850e-47 |
| Msa0405530 | Msa1087040 | 0.839014 | 2.040693e-57 | -8.615850e-47 |
| Msa0405530 | Msa1087050 | 0.926967 | 2.259659e-91 | -8.615850e-47 |
| Msa0405530 | Msa1087110 | 0.916603 | 1.459492e-85 | -8.615850e-47 |
| Msa0405530 | Msa1087120 | 0.847450 | 1.147579e-59 | -8.615850e-47 |
| Msa0405530 | Msa1143120 | 0.823957 | 1.047166e-53 | -8.615850e-47 |
| Msa0405530 | Msa1143170 | 0.826269 | 2.975827e-54 | -8.615850e-47 |
| Msa0405530 | Msa1305090 | 0.807825 | 4.182944e-50 | -8.615850e-47 |
| Msa0405530 | Msa1342040 | 0.800161 | 1.640745e-48 | -8.615850e-47 |
| Msa0405530 | Msa1354420 | 0.895684 | 7.584980e-76 | -8.615850e-47 |
| Msa0405530 | Msa1354430 | 0.844322 | 8.123623e-59 | -8.615850e-47 |
| Msa0405530 | Msa1354480 | 0.828642 | 8.026647e-55 | -8.615850e-47 |
| Msa0405530 | Msa1354490 | 0.858253 | 9.351258e-63 | -8.615850e-47 |
| Msa0405530 | Msa1354500 | 0.945407 | 3.238289e-104 | -8.615850e-47 |
| Msa0405530 | Msa1354550 | 0.890138 | 1.291761e-73 | -8.615850e-47 |
| Msa0405530 | Msa1354560 | 0.855030 | 8.289803e-62 | -8.615850e-47 |
| Msa0405530 | Msa1354610 | 0.865769 | 4.642318e-65 | -8.615850e-47 |
| Msa0405530 | Msa1354620 | 0.853467 | 2.344900e-61 | -8.615850e-47 |
| Msa0405530 | Msa1354630 | 0.944165 | 3.214773e-103 | -8.615850e-47 |
| Msa0405530 | Msa1354680 | 0.920667 | 9.567856e-88 | -8.615850e-47 |
| Msa0405530 | Msa1354690 | 0.845157 | 4.838991e-59 | -8.615850e-47 |
| Msa0405530 | Msa1354700 | 0.831081 | 2.042757e-55 | -8.615850e-47 |
| Msa0405530 | Msa1354740 | 0.862686 | 4.251554e-64 | -8.615850e-47 |
| Msa0405530 | Msa1354750 | 0.853224 | 2.752079e-61 | -8.615850e-47 |
| Msa0405530 | Msa1354760 | 0.948678 | 5.855509e-107 | -8.615850e-47 |
| Msa0405530 | Msa1354810 | 0.891194 | 4.961853e-74 | -8.615850e-47 |
| Msa0405530 | Msa1354820 | 0.834786 | 2.450671e-56 | -8.615850e-47 |
| Msa0405530 | Msa1354920 | 0.828871 | 7.064243e-55 | -8.615850e-47 |
| Msa0405530 | Msa1354980 | 0.888932 | 3.806315e-73 | -8.615850e-47 |
| Msa0405530 | Msa1354990 | 0.853117 | 2.953544e-61 | -8.615850e-47 |
| Msa0405530 | Msa1355080 | 0.803592 | 3.239491e-49 | -8.615850e-47 |
| Msa0405530 | Msa1355090 | 0.822169 | 2.735703e-53 | -8.615850e-47 |
| Msa0405530 | Msa1365890 | 0.866851 | 2.106370e-65 | -8.615850e-47 |
| Msa0405530 | Msa1365900 | 0.827512 | 1.502017e-54 | -8.615850e-47 |
| Msa0405530 | Msa1365950 | 0.848078 | 7.704590e-60 | -8.615850e-47 |
| Msa0405530 | Msa1365960 | 0.801315 | 9.542186e-49 | -8.615850e-47 |
| Msa0405530 | Msa1365970 | 0.932832 | 4.704485e-95 | -8.615850e-47 |
| Msa0405530 | Msa1366080 | 0.868777 | 5.074962e-66 | -8.615850e-47 |
| Msa0405530 | Msa1366090 | 0.821858 | 3.228528e-53 | -8.615850e-47 |
| Msa0405530 | Msa1368230 | 0.847594 | 1.047666e-59 | -8.615850e-47 |
| Msa0405530 | Msa1368240 | 0.929092 | 1.140251e-92 | -8.615850e-47 |
| Msa0405530 | Msa1380610 | 0.805584 | 1.244278e-49 | -8.615850e-47 |
| Msa0405530 | Msa1385410 | 0.842502 | 2.486115e-58 | -8.615850e-47 |
| Msa0405530 | Msa1385420 | 0.804202 | 2.419290e-49 | -8.615850e-47 |
| Msa0405530 | Msa1391090 | 0.817026 | 4.081024e-52 | -8.615850e-47 |
| Msa0405530 | Msa1391100 | 0.844068 | 9.502400e-59 | -8.615850e-47 |
| Msa0405530 | Msa1391110 | 0.927899 | 6.168435e-92 | -8.615850e-47 |
| Msa0405530 | Msa1391160 | 0.844871 | 5.778042e-59 | -8.615850e-47 |
| Msa0405530 | Msa1391170 | 0.849563 | 2.983946e-60 | -8.615850e-47 |
| Msa0405530 | Msa1391220 | 0.822528 | 2.257500e-53 | -8.615850e-47 |
| Msa0405530 | Msa1391230 | 0.811835 | 5.737689e-51 | -8.615850e-47 |
| Msa0405530 | Msa1391240 | 0.925263 | 2.326099e-90 | -8.615850e-47 |
| Msa0405530 | Msa1394030 | 0.843327 | 1.500198e-58 | -8.615850e-47 |
| Msa0405530 | Msa1394040 | 0.812944 | 3.285555e-51 | -8.615850e-47 |
| Msa0405530 | Msa1394150 | 0.800591 | 1.341483e-48 | -8.615850e-47 |
| Msa0405530 | Msa1394160 | 0.809226 | 2.100751e-50 | -8.615850e-47 |
| Msa0405530 | Msa1394210 | 0.818539 | 1.859153e-52 | -8.615850e-47 |
| Msa0405530 | Msa1460120 | 0.877283 | 7.114794e-69 | -8.615850e-47 |
| Msa0405530 | Msa1460130 | 0.856136 | 3.943929e-62 | -8.615850e-47 |
| Msa0263770 | Msa0405530 | 0.879275 | 1.422715e-69 | -8.615850e-47 |
| Msa0268210 | Msa0405530 | 0.813180 | 2.915878e-51 | -8.615850e-47 |
| Msa0268250 | Msa0405530 | 0.826797 | 2.226929e-54 | -8.615850e-47 |
| Msa0268260 | Msa0405530 | 0.827345 | 1.647279e-54 | -8.615850e-47 |
| Msa0268270 | Msa0405530 | 0.919134 | 6.580199e-87 | -8.615850e-47 |
| Msa0268300 | Msa0405530 | 0.860597 | 1.848321e-63 | -8.615850e-47 |
| Msa0268310 | Msa0405530 | 0.833473 | 5.226233e-56 | -8.615850e-47 |
| Msa0268430 | Msa0405530 | 0.801029 | 1.091962e-48 | -8.615850e-47 |
| Msa0268570 | Msa0405530 | 0.823399 | 1.414476e-53 | -8.615850e-47 |
| Msa0268630 | Msa0405530 | 0.806938 | 6.450519e-50 | -8.615850e-47 |
| Msa0268670 | Msa0405530 | 0.807033 | 6.157286e-50 | -8.615850e-47 |
| Msa0268740 | Msa0405530 | 0.800384 | 1.478203e-48 | -8.615850e-47 |
| Msa0268750 | Msa0405530 | 0.833503 | 5.137128e-56 | -8.615850e-47 |
| Msa0268830 | Msa0405530 | 0.832713 | 8.077763e-56 | -8.615850e-47 |
| Msa0268880 | Msa0405530 | 0.806478 | 8.067377e-50 | -8.615850e-47 |
| Msa0268960 | Msa0405530 | 0.848907 | 4.542783e-60 | -8.615850e-47 |
| Msa0269040 | Msa0405530 | 0.826581 | 2.507880e-54 | -8.615850e-47 |
| Msa0269130 | Msa0405530 | 0.819293 | 1.253398e-52 | -8.615850e-47 |
| Msa0269140 | Msa0405530 | 0.846294 | 2.377087e-59 | -8.615850e-47 |
| Msa0269150 | Msa0405530 | 0.942579 | 5.600008e-102 | -8.615850e-47 |
| Msa0344310 | Msa0405530 | 0.802088 | 6.623203e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405530 | MtrunA17_Chr7g0234981 | 87.500 | 88 | 11 | 0 | 65 | 152 | 6 | 93 | 3.00e-49 | 153 |
| Msa0405530 | MtrunA17_MTg0491661 | 66.265 | 83 | 28 | 0 | 70 | 152 | 41 | 123 | 4.92e-35 | 118 |
| Msa0405530 | MtrunA17_CPg0492401 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 3.24e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405530 | ATCG00905.1 | 97.647 | 85 | 2 | 0 | 68 | 152 | 1 | 85 | 1.39e-54 | 167 |
| Msa0405530 | ATCG01230.1 | 97.647 | 85 | 2 | 0 | 68 | 152 | 1 | 85 | 1.39e-54 | 167 |
| Msa0405530 | AT2G07675.1 | 51.639 | 122 | 52 | 2 | 31 | 152 | 9 | 123 | 1.42e-34 | 117 |
| Msa0405530 | ATMG00980.1 | 51.639 | 122 | 52 | 2 | 31 | 152 | 9 | 123 | 1.42e-34 | 117 |
Find 40 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCTTTCGAAGTAAT+TGG | 0.147507 | 3_2:+40290646 | None:intergenic |
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | 3_2:+40290295 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | 3_2:-40290328 | Msa0405530:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | 3_2:+40290446 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | 3_2:-40291290 | Msa0405530:CDS |
| AACCTATGTTGTATATTAAG+AGG | 0.368497 | 3_2:-40291361 | None:intergenic |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | 3_2:+40290356 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | 3_2:+40290526 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | 3_2:-40290327 | Msa0405530:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | 3_2:+40290329 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | 3_2:+40290456 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | 3_2:-40290430 | Msa0405530:CDS |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | 3_2:-40290502 | Msa0405530:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | 3_2:+40291298 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | 3_2:-40290469 | Msa0405530:CDS |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | 3_2:+40290357 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | 3_2:-40290356 | Msa0405530:CDS |
| ATTGAACGAGGAGCCGTATG+AGG | 0.537706 | 3_2:-40290629 | Msa0405530:intron |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | 3_2:+40290516 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | 3_2:-40290429 | Msa0405530:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | 3_2:-40290590 | Msa0405530:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | 3_2:+40290501 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | 3_2:-40290475 | Msa0405530:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | 3_2:-40290382 | Msa0405530:CDS |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | 3_2:-40291282 | Msa0405530:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | 3_2:-40290428 | Msa0405530:CDS |
| AACCTCTTAATATACAACAT+AGG | 0.594876 | 3_2:+40291359 | None:intergenic |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | 3_2:-40290343 | Msa0405530:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | 3_2:+40290457 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | 3_2:-40290364 | Msa0405530:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | 3_2:+40290486 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | 3_2:+40291308 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | 3_2:-40290326 | Msa0405530:CDS |
| ATTGTACCATCCTAAAAGCA+AGG | 0.638231 | 3_2:+40291331 | None:intergenic |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | 3_2:-40290406 | Msa0405530:CDS |
| GAGTGGAGATTATCGAACGA+AGG | 0.659654 | 3_2:-40290671 | Msa0405530:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | 3_2:-40290427 | Msa0405530:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | 3_2:+40290388 | None:intergenic |
| TACTTCGAAAGAATTGAACG+AGG | 0.737159 | 3_2:-40290641 | Msa0405530:CDS |
| GTACCATCCTAAAAGCAAGG+AGG | 0.768564 | 3_2:+40291334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr3_2:40290561-40290580 | Msa0405530:CDS | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | chr3_2:40290561-40290580 | Msa0405530:CDS | 15.0% |
| !! | ATCTATCTATAATGATCAAT+TGG | + | chr3_2:40290656-40290675 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr3_2:40290922-40290941 | Msa0405530:intron | 20.0% |
| !!! | AATTAGTTCTCGTTATTTTT+AGG | - | chr3_2:40290967-40290986 | Msa0405530:intron | 20.0% |
| !!! | ATTAGTTCTCGTTATTTTTA+GGG | - | chr3_2:40290968-40290987 | Msa0405530:intron | 20.0% |
| !! | ATCTATCTATAATGATCAAT+TGG | + | chr3_2:40290656-40290675 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | chr3_2:40290922-40290941 | Msa0405530:intron | 20.0% |
| !!! | AATTAGTTCTCGTTATTTTT+AGG | - | chr3_2:40290967-40290986 | Msa0405530:intron | 20.0% |
| !!! | ATTAGTTCTCGTTATTTTTA+GGG | - | chr3_2:40290968-40290987 | Msa0405530:intron | 20.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr3_2:40290446-40290465 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr3_2:40290669-40290688 | Msa0405530:CDS | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr3_2:40290745-40290764 | Msa0405530:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr3_2:40290746-40290765 | Msa0405530:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr3_2:40290813-40290832 | Msa0405530:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr3_2:40290823-40290842 | Msa0405530:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr3_2:40290886-40290905 | None:intergenic | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr3_2:40291022-40291041 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr3_2:40291222-40291241 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | chr3_2:40290446-40290465 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | chr3_2:40290669-40290688 | Msa0405530:CDS | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | chr3_2:40290745-40290764 | Msa0405530:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | chr3_2:40290746-40290765 | Msa0405530:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | chr3_2:40290813-40290832 | Msa0405530:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | chr3_2:40290823-40290842 | Msa0405530:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | chr3_2:40290886-40290905 | None:intergenic | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | chr3_2:40291022-40291041 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | chr3_2:40291222-40291241 | None:intergenic | 25.0% |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr3_2:40290802-40290821 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr3_2:40290803-40290822 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr3_2:40290801-40290820 | Msa0405530:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr3_2:40290818-40290837 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr3_2:40290816-40290835 | Msa0405530:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr3_2:40290822-40290841 | Msa0405530:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr3_2:40291212-40291231 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr3_2:40291236-40291255 | Msa0405530:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr3_2:40291338-40291357 | Msa0405530:CDS | 30.0% |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | chr3_2:40290802-40290821 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | chr3_2:40290803-40290822 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | chr3_2:40290801-40290820 | Msa0405530:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | chr3_2:40290818-40290837 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | chr3_2:40290816-40290835 | Msa0405530:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | chr3_2:40290822-40290841 | Msa0405530:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | chr3_2:40291212-40291231 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | chr3_2:40291236-40291255 | Msa0405530:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | chr3_2:40291338-40291357 | Msa0405530:CDS | 30.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr3_2:40290337-40290356 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr3_2:40290600-40290619 | Msa0405530:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr3_2:40290628-40290647 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr3_2:40290800-40290819 | Msa0405530:intron | 35.0% |
| !!! | GTTCTCGTTATTTTTAGGGA+AGG | - | chr3_2:40290972-40290991 | Msa0405530:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr3_2:40291024-40291043 | Msa0405530:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr3_2:40291052-40291071 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr3_2:40291054-40291073 | Msa0405530:intron | 35.0% | |
| !! | TGGTATTTTAGGGGTAATAG+TGG | + | chr3_2:40291122-40291141 | None:intergenic | 35.0% |
| ! | AGGCAGAGTTTGGTATTTTA+GGG | + | chr3_2:40291132-40291151 | None:intergenic | 35.0% |
| ! | AAGGCAGAGTTTGGTATTTT+AGG | + | chr3_2:40291133-40291152 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr3_2:40291190-40291209 | Msa0405530:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr3_2:40291211-40291230 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr3_2:40291235-40291254 | Msa0405530:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr3_2:40291237-40291256 | Msa0405530:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr3_2:40291339-40291358 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr3_2:40291337-40291356 | Msa0405530:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr3_2:40291339-40291358 | Msa0405530:CDS | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | chr3_2:40290337-40290356 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | chr3_2:40290600-40290619 | Msa0405530:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | chr3_2:40290628-40290647 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | chr3_2:40290800-40290819 | Msa0405530:intron | 35.0% |
| !!! | GTTCTCGTTATTTTTAGGGA+AGG | - | chr3_2:40290972-40290991 | Msa0405530:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | chr3_2:40291024-40291043 | Msa0405530:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | chr3_2:40291052-40291071 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | chr3_2:40291054-40291073 | Msa0405530:intron | 35.0% | |
| !! | TGGTATTTTAGGGGTAATAG+TGG | + | chr3_2:40291122-40291141 | None:intergenic | 35.0% |
| ! | AGGCAGAGTTTGGTATTTTA+GGG | + | chr3_2:40291132-40291151 | None:intergenic | 35.0% |
| ! | AAGGCAGAGTTTGGTATTTT+AGG | + | chr3_2:40291133-40291152 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | chr3_2:40291190-40291209 | Msa0405530:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | chr3_2:40291211-40291230 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | chr3_2:40291235-40291254 | Msa0405530:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | chr3_2:40291237-40291256 | Msa0405530:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | chr3_2:40291339-40291358 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | chr3_2:40291337-40291356 | Msa0405530:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | chr3_2:40291339-40291358 | Msa0405530:CDS | 35.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr3_2:40290411-40290430 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr3_2:40290410-40290429 | Msa0405530:CDS | 40.0% | |
| AGCGGGTATCTTTCACAAAA+AGG | - | chr3_2:40290729-40290748 | Msa0405530:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr3_2:40290758-40290777 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr3_2:40290779-40290798 | None:intergenic | 40.0% | |
| !!! | CGTTATTTTTAGGGAAGGAG+TGG | - | chr3_2:40290977-40290996 | Msa0405530:intron | 40.0% |
| !! | GGCAGAGTTTGGTATTTTAG+GGG | + | chr3_2:40291131-40291150 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr3_2:40291142-40291161 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr3_2:40291152-40291171 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr3_2:40291182-40291201 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr3_2:40291196-40291215 | Msa0405530:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr3_2:40291238-40291257 | Msa0405530:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr3_2:40291280-40291299 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr3_2:40291283-40291302 | Msa0405530:CDS | 40.0% | |
| TTTCTTGCGTGATGAACTGT+TGG | + | chr3_2:40290411-40290430 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | chr3_2:40290410-40290429 | Msa0405530:CDS | 40.0% | |
| AGCGGGTATCTTTCACAAAA+AGG | - | chr3_2:40290729-40290748 | Msa0405530:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | chr3_2:40290758-40290777 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | chr3_2:40290779-40290798 | None:intergenic | 40.0% | |
| !!! | CGTTATTTTTAGGGAAGGAG+TGG | - | chr3_2:40290977-40290996 | Msa0405530:intron | 40.0% |
| !! | GGCAGAGTTTGGTATTTTAG+GGG | + | chr3_2:40291131-40291150 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | chr3_2:40291142-40291161 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | chr3_2:40291152-40291171 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | chr3_2:40291182-40291201 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | chr3_2:40291196-40291215 | Msa0405530:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | chr3_2:40291238-40291257 | Msa0405530:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | chr3_2:40291280-40291299 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | chr3_2:40291283-40291302 | Msa0405530:CDS | 40.0% | |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr3_2:40290324-40290343 | Msa0405530:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr3_2:40290328-40290347 | Msa0405530:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr3_2:40290334-40290353 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr3_2:40290382-40290401 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr3_2:40290383-40290402 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr3_2:40290384-40290403 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr3_2:40290383-40290402 | Msa0405530:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr3_2:40290833-40290852 | Msa0405530:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr3_2:40290994-40291013 | Msa0405530:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr3_2:40291067-40291086 | Msa0405530:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr3_2:40291242-40291261 | Msa0405530:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr3_2:40291243-40291262 | Msa0405530:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr3_2:40291259-40291278 | Msa0405530:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr3_2:40291311-40291330 | None:intergenic | 45.0% | |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | chr3_2:40290324-40290343 | Msa0405530:CDS | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | chr3_2:40290328-40290347 | Msa0405530:CDS | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | chr3_2:40290334-40290353 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | chr3_2:40290382-40290401 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | chr3_2:40290383-40290402 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | chr3_2:40290384-40290403 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | chr3_2:40290383-40290402 | Msa0405530:CDS | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | chr3_2:40290833-40290852 | Msa0405530:intron | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | chr3_2:40290994-40291013 | Msa0405530:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | chr3_2:40291067-40291086 | Msa0405530:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | chr3_2:40291242-40291261 | Msa0405530:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | chr3_2:40291243-40291262 | Msa0405530:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | chr3_2:40291259-40291278 | Msa0405530:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | chr3_2:40291311-40291330 | None:intergenic | 45.0% | |
| AGATACCCGCTTTCGTGCTT+TGG | + | chr3_2:40290720-40290739 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr3_2:40290761-40290780 | Msa0405530:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr3_2:40291036-40291055 | Msa0405530:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr3_2:40291075-40291094 | Msa0405530:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr3_2:40291167-40291186 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr3_2:40291249-40291268 | Msa0405530:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr3_2:40291312-40291331 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr3_2:40291309-40291328 | Msa0405530:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr3_2:40291322-40291341 | Msa0405530:CDS | 50.0% | |
| AGATACCCGCTTTCGTGCTT+TGG | + | chr3_2:40290720-40290739 | None:intergenic | 50.0% | |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | chr3_2:40290761-40290780 | Msa0405530:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | chr3_2:40291036-40291055 | Msa0405530:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | chr3_2:40291075-40291094 | Msa0405530:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | chr3_2:40291167-40291186 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | chr3_2:40291249-40291268 | Msa0405530:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | chr3_2:40291312-40291331 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | chr3_2:40291309-40291328 | Msa0405530:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | chr3_2:40291322-40291341 | Msa0405530:CDS | 50.0% | |
| GACCCACCAAAGCACGAAAG+CGG | - | chr3_2:40290711-40290730 | Msa0405530:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr3_2:40290712-40290731 | Msa0405530:intron | 55.0% | |
| ACCCGCTTTCGTGCTTTGGT+GGG | + | chr3_2:40290716-40290735 | None:intergenic | 55.0% | |
| TACCCGCTTTCGTGCTTTGG+TGG | + | chr3_2:40290717-40290736 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr3_2:40291163-40291182 | Msa0405530:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr3_2:40291301-40291320 | Msa0405530:CDS | 55.0% | |
| GACCCACCAAAGCACGAAAG+CGG | - | chr3_2:40290711-40290730 | Msa0405530:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | chr3_2:40290712-40290731 | Msa0405530:intron | 55.0% | |
| ACCCGCTTTCGTGCTTTGGT+GGG | + | chr3_2:40290716-40290735 | None:intergenic | 55.0% | |
| TACCCGCTTTCGTGCTTTGG+TGG | + | chr3_2:40290717-40290736 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | chr3_2:40291163-40291182 | Msa0405530:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | chr3_2:40291301-40291320 | Msa0405530:CDS | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr3_2:40290360-40290379 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr3_2:40290377-40290396 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr3_2:40290375-40290394 | Msa0405530:CDS | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | chr3_2:40290360-40290379 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | chr3_2:40290377-40290396 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | chr3_2:40290375-40290394 | Msa0405530:CDS | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr3_2:40290370-40290389 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | chr3_2:40290370-40290389 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 40290309 | 40291378 | 40290309 | ID=Msa0405530;Name=Msa0405530 |
| chr3_2 | mRNA | 40290309 | 40291378 | 40290309 | ID=Msa0405530-mRNA-1;Parent=Msa0405530;Name=Msa0405530-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|1|1|3|0|152 |
| chr3_2 | exon | 40291283 | 40291378 | 40291283 | ID=Msa0405530-mRNA-1:exon:7824;Parent=Msa0405530-mRNA-1 |
| chr3_2 | exon | 40290630 | 40290698 | 40290630 | ID=Msa0405530-mRNA-1:exon:7823;Parent=Msa0405530-mRNA-1 |
| chr3_2 | exon | 40290309 | 40290602 | 40290309 | ID=Msa0405530-mRNA-1:exon:7822;Parent=Msa0405530-mRNA-1 |
| chr3_2 | CDS | 40291283 | 40291378 | 40291283 | ID=Msa0405530-mRNA-1:cds;Parent=Msa0405530-mRNA-1 |
| chr3_2 | CDS | 40290630 | 40290698 | 40290630 | ID=Msa0405530-mRNA-1:cds;Parent=Msa0405530-mRNA-1 |
| chr3_2 | CDS | 40290309 | 40290602 | 40290309 | ID=Msa0405530-mRNA-1:cds;Parent=Msa0405530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
