AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366080 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1366080 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1366080 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1366080 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1366080 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1366080 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1366080 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1366080 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1366080 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1366080 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366080 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1366080 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1366080 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1366080 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1366080 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1366080 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0018442:-237647 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0018442:+239834 Msa1366080:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0018442:+238880 Msa1366080:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0018442:+239908 Msa1366080:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0018442:+238526 Msa1366080:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0018442:-238868 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0018442:+239935 Msa1366080:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0018442:+237710 Msa1366080:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0018442:+239974 Msa1366080:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0018442:-239460 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0018442:+238897 Msa1366080:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0018442:-239946 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0018442:-239760 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0018442:-239487 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0018442:-239753 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0018442:-237646 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0018442:+239804 Msa1366080:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0018442:-239964 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0018442:-238865 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0018442:-238906 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0018442:-238864 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0018442:+238863 Msa1366080:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0018442:-237686 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0018442:-237665 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0018442:-239843 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0018442:-237674 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0018442:-238518 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0018442:-239459 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0018442:+239460 Msa1366080:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0018442:+239706 Msa1366080:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0018442:+237614 Msa1366080:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0018442:-237694 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0018442:+238862 Msa1366080:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0018442:+239954 Msa1366080:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0018442:+239638 Msa1366080:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0018442:+239897 Msa1366080:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0018442:+239992 Msa1366080:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0018442:-239844 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0018442:-237702 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0018442:-240337 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0018442:+239387 Msa1366080:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0018442:-240506 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0018442:+240490 Msa1366080:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0018442:+239949 Msa1366080:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0018442:+237615 Msa1366080:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0018442:+239948 Msa1366080:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0018442:+239434 Msa1366080:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0018442:+238534 Msa1366080:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0018442:+239388 Msa1366080:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0018442:+239998 Msa1366080:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0018442:+239473 Msa1366080:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0018442:-237687 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0018442:-239915 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0018442:-237644 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0018442:+239452 Msa1366080:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0018442:-238508 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0018442:+238864 Msa1366080:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0018442:-237645 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0018442:-237671 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0018442:-238485 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0018442:+239410 Msa1366080:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0018442:+240473 Msa1366080:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0018442:+239660 Msa1366080:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0018442:+239389 Msa1366080:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0018442:-237643 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0018442:-237685 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0018442:-239428 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0018442:+239764 Msa1366080:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0018442:+239846 Msa1366080:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0018442:-238482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0018442:237897-237916 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0018442:237906-237925 Msa1366080:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0018442:238272-238291 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0018442:238273-238292 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0018442:238276-238295 Msa1366080:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0018442:237907-237926 Msa1366080:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0018442:238712-238731 Msa1366080:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0018442:239543-239562 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0018442:239544-239563 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0018442:239545-239564 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0018442:240219-240238 Msa1366080:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0018442:237649-237668 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0018442:237650-237669 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0018442:237959-237978 Msa1366080:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0018442:238109-238128 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0018442:238109-238128 Msa1366080:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0018442:238454-238473 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0018442:239073-239092 Msa1366080:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0018442:239118-239137 Msa1366080:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0018442:239541-239560 Msa1366080:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0018442:240116-240135 Msa1366080:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0018442:240210-240229 Msa1366080:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0018442:240230-240249 Msa1366080:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0018442:237648-237667 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0018442:237838-237857 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0018442:237839-237858 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0018442:237840-237859 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0018442:237949-237968 Msa1366080:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0018442:237965-237984 Msa1366080:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0018442:238014-238033 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0018442:238060-238079 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0018442:238108-238127 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0018442:238126-238145 Msa1366080:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0018442:238231-238250 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0018442:238232-238251 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0018442:238352-238371 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0018442:238353-238372 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0018442:238354-238373 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0018442:238455-238474 Msa1366080:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0018442:238460-238479 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0018442:238597-238616 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0018442:238820-238839 Msa1366080:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0018442:238896-238915 Msa1366080:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0018442:238897-238916 Msa1366080:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0018442:238964-238983 Msa1366080:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0018442:238974-238993 Msa1366080:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0018442:239037-239056 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0018442:239119-239138 Msa1366080:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0018442:239173-239192 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0018442:239373-239392 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0018442:239524-239543 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0018442:239630-239649 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0018442:239638-239657 Msa1366080:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0018442:239668-239687 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0018442:240102-240121 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0018442:240389-240408 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0018442:240473-240492 Msa1366080:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0018442:237646-237665 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0018442:237647-237666 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0018442:237730-237749 Msa1366080:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0018442:237731-237750 Msa1366080:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0018442:238009-238028 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0018442:238009-238028 Msa1366080:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0018442:238059-238078 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0018442:238061-238080 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0018442:238226-238245 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0018442:238266-238285 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0018442:238320-238339 Msa1366080:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0018442:238397-238416 Msa1366080:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0018442:238953-238972 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0018442:238954-238973 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0018442:238952-238971 Msa1366080:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0018442:238969-238988 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0018442:238967-238986 Msa1366080:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0018442:238973-238992 Msa1366080:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0018442:239363-239382 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0018442:239387-239406 Msa1366080:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0018442:239489-239508 Msa1366080:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0018442:239616-239635 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0018442:239625-239644 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0018442:239660-239679 Msa1366080:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0018442:239674-239693 Msa1366080:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0018442:239706-239725 Msa1366080:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0018442:239796-239815 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0018442:239935-239954 Msa1366080:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0018442:240074-240093 Msa1366080:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0018442:240084-240103 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0018442:240090-240109 Msa1366080:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0018442:240164-240183 Msa1366080:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0018442:240340-240359 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0018442:240339-240358 Msa1366080:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0018442:240356-240375 Msa1366080:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0018442:240378-240397 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0018442:240430-240449 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0018442:240430-240449 Msa1366080:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0018442:237641-237660 Msa1366080:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0018442:237710-237729 Msa1366080:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0018442:237737-237756 Msa1366080:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0018442:237738-237757 Msa1366080:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0018442:237856-237875 Msa1366080:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0018442:237933-237952 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0018442:238265-238284 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0018442:238384-238403 Msa1366080:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0018442:238390-238409 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0018442:238488-238507 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0018442:238751-238770 Msa1366080:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0018442:238779-238798 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0018442:238951-238970 Msa1366080:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0018442:239175-239194 Msa1366080:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0018442:239203-239222 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0018442:239205-239224 Msa1366080:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0018442:239273-239292 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0018442:239283-239302 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0018442:239284-239303 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0018442:239341-239360 Msa1366080:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0018442:239362-239381 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0018442:239386-239405 Msa1366080:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0018442:239388-239407 Msa1366080:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0018442:239490-239509 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0018442:239488-239507 Msa1366080:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0018442:239490-239509 Msa1366080:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0018442:239763-239782 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0018442:239763-239782 Msa1366080:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0018442:239795-239814 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0018442:239847-239866 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0018442:239992-240011 Msa1366080:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0018442:240039-240058 Msa1366080:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0018442:240375-240394 Msa1366080:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0018442:237832-237851 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0018442:237868-237887 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0018442:238139-238158 Msa1366080:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0018442:238170-238189 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0018442:238185-238204 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0018442:238190-238209 Msa1366080:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0018442:238197-238216 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0018442:238264-238283 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0018442:238383-238402 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0018442:238437-238456 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0018442:238441-238460 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0018442:238562-238581 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0018442:238561-238580 Msa1366080:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0018442:238909-238928 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0018442:238930-238949 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0018442:239123-239142 Msa1366080:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0018442:239282-239301 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0018442:239293-239312 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0018442:239303-239322 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0018442:239333-239352 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0018442:239347-239366 Msa1366080:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0018442:239389-239408 Msa1366080:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0018442:239431-239450 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0018442:239434-239453 Msa1366080:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0018442:239762-239781 Msa1366080:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0018442:239764-239783 Msa1366080:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0018442:239804-239823 Msa1366080:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0018442:239834-239853 Msa1366080:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0018442:239846-239865 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0018442:239846-239865 Msa1366080:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0018442:239876-239895 Msa1366080:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0018442:239908-239927 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0018442:239908-239927 Msa1366080:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0018442:239918-239937 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0018442:239949-239968 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0018442:239949-239968 Msa1366080:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0018442:239985-240004 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0018442:240054-240073 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0018442:240183-240202 Msa1366080:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0018442:240184-240203 Msa1366080:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0018442:237614-237633 Msa1366080:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0018442:237668-237687 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0018442:237688-237707 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0018442:237689-237708 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0018442:237697-237716 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0018442:237705-237724 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0018442:237998-238017 Msa1366080:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0018442:238171-238190 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0018442:238263-238282 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0018442:238475-238494 Msa1366080:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0018442:238479-238498 Msa1366080:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0018442:238485-238504 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0018442:238533-238552 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0018442:238534-238553 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0018442:238535-238554 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0018442:238534-238553 Msa1366080:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0018442:238880-238899 Msa1366080:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0018442:238984-239003 Msa1366080:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0018442:239128-239147 Msa1366080:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0018442:239145-239164 Msa1366080:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0018442:239218-239237 Msa1366080:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0018442:239393-239412 Msa1366080:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0018442:239394-239413 Msa1366080:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0018442:239410-239429 Msa1366080:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0018442:239462-239481 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0018442:239568-239587 Msa1366080:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0018442:239756-239775 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0018442:239868-239887 Msa1366080:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0018442:239883-239902 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0018442:239907-239926 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0018442:239948-239967 Msa1366080:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0018442:239998-240017 Msa1366080:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0018442:240185-240204 Msa1366080:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0018442:240509-240528 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0018442:237615-237634 Msa1366080:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0018442:237636-237655 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0018442:237674-237693 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0018442:237677-237696 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0018442:237690-237709 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0018442:237777-237796 Msa1366080:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0018442:237813-237832 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0018442:238262-238281 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0018442:238912-238931 Msa1366080:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0018442:239187-239206 Msa1366080:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0018442:239226-239245 Msa1366080:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0018442:239318-239337 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0018442:239400-239419 Msa1366080:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0018442:239463-239482 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0018442:239460-239479 Msa1366080:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0018442:239473-239492 Msa1366080:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0018442:239572-239591 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0018442:239862-239881 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0018442:239967-239986 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0018442:239974-239993 Msa1366080:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0018442:237789-237808 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0018442:237792-237811 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0018442:237827-237846 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0018442:237828-237847 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0018442:238260-238279 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0018442:238261-238280 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0018442:238862-238881 Msa1366080:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0018442:238863-238882 Msa1366080:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0018442:238871-238890 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0018442:239314-239333 Msa1366080:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0018442:239452-239471 Msa1366080:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0018442:239573-239592 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0018442:239573-239592 Msa1366080:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0018442:239954-239973 Msa1366080:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0018442:240490-240509 Msa1366080:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0018442:237826-237845 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0018442:238511-238530 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0018442:238528-238547 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0018442:238526-238545 Msa1366080:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0018442:238867-238886 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0018442:238864-238883 Msa1366080:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0018442:238868-238887 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0018442:238521-238540 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0018442:239897-239916 Msa1366080:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 237600 240530 237600 ID=Msa1366080;Name=Msa1366080
tig0018442 mRNA 237600 240530 237600 ID=Msa1366080-mRNA-1;Parent=Msa1366080;Name=Msa1366080-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0018442 exon 237600 237752 237600 ID=Msa1366080-mRNA-1:exon:14944;Parent=Msa1366080-mRNA-1
tig0018442 exon 238475 238564 238475 ID=Msa1366080-mRNA-1:exon:14945;Parent=Msa1366080-mRNA-1
tig0018442 exon 238825 238918 238825 ID=Msa1366080-mRNA-1:exon:14946;Parent=Msa1366080-mRNA-1
tig0018442 exon 239402 239494 239402 ID=Msa1366080-mRNA-1:exon:14947;Parent=Msa1366080-mRNA-1
tig0018442 exon 239649 239885 239649 ID=Msa1366080-mRNA-1:exon:14948;Parent=Msa1366080-mRNA-1
tig0018442 exon 239898 240044 239898 ID=Msa1366080-mRNA-1:exon:14949;Parent=Msa1366080-mRNA-1
tig0018442 exon 240337 240530 240337 ID=Msa1366080-mRNA-1:exon:14950;Parent=Msa1366080-mRNA-1
tig0018442 CDS 237600 237752 237600 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 238475 238564 238475 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 238825 238918 238825 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 239402 239494 239402 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 239649 239885 239649 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 239898 240044 239898 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
tig0018442 CDS 240337 240530 240337 ID=Msa1366080-mRNA-1:cds;Parent=Msa1366080-mRNA-1
Gene Sequence

>Msa1366080

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1366080

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI