Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354630 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354630 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354630 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354630 | 0.801297 | 9.621824e-49 | -8.615850e-47 |
| Msa0095230 | Msa1354630 | 0.813339 | 2.691714e-51 | -8.615850e-47 |
| Msa1354320 | Msa1354630 | 0.808399 | 3.157596e-50 | -8.615850e-47 |
| Msa1354420 | Msa1354630 | 0.907203 | 6.527857e-81 | -8.615850e-47 |
| Msa1354430 | Msa1354630 | 0.853870 | 1.794812e-61 | -8.615850e-47 |
| Msa1354480 | Msa1354630 | 0.854687 | 1.042763e-61 | -8.615850e-47 |
| Msa1354490 | Msa1354630 | 0.882899 | 7.072154e-71 | -8.615850e-47 |
| Msa1354500 | Msa1354630 | 0.971455 | 3.437987e-133 | -8.615850e-47 |
| Msa1354550 | Msa1354630 | 0.913232 | 7.811625e-84 | -8.615850e-47 |
| Msa1354560 | Msa1354630 | 0.857954 | 1.147949e-62 | -8.615850e-47 |
| Msa1354610 | Msa1354630 | 0.882802 | 7.672493e-71 | -8.615850e-47 |
| Msa1354620 | Msa1354630 | 0.879798 | 9.286708e-70 | -8.615850e-47 |
| Msa1354630 | Msa1354680 | 0.932015 | 1.603408e-94 | -8.615850e-47 |
| Msa1354630 | Msa1354690 | 0.873547 | 1.351152e-67 | -8.615850e-47 |
| Msa1354630 | Msa1354700 | 0.844321 | 8.127071e-59 | -8.615850e-47 |
| Msa1354630 | Msa1354740 | 0.876745 | 1.093528e-68 | -8.615850e-47 |
| Msa1354630 | Msa1354750 | 0.866533 | 2.660124e-65 | -8.615850e-47 |
| Msa1354630 | Msa1354760 | 0.974350 | 5.306726e-138 | -8.615850e-47 |
| Msa1354630 | Msa1354810 | 0.915041 | 9.424457e-85 | -8.615850e-47 |
| Msa1354630 | Msa1354820 | 0.848728 | 5.094322e-60 | -8.615850e-47 |
| Msa1354630 | Msa1354910 | 0.812663 | 3.786264e-51 | -8.615850e-47 |
| Msa1354630 | Msa1354920 | 0.851161 | 1.062411e-60 | -8.615850e-47 |
| Msa1354630 | Msa1354980 | 0.914220 | 2.474170e-84 | -8.615850e-47 |
| Msa1354630 | Msa1354990 | 0.856910 | 2.337588e-62 | -8.615850e-47 |
| Msa1354630 | Msa1355080 | 0.827370 | 1.624392e-54 | -8.615850e-47 |
| Msa1354630 | Msa1355090 | 0.849100 | 4.016353e-60 | -8.615850e-47 |
| Msa1354630 | Msa1365890 | 0.888161 | 7.546388e-73 | -8.615850e-47 |
| Msa1354630 | Msa1365900 | 0.840653 | 7.639230e-58 | -8.615850e-47 |
| Msa1354630 | Msa1365950 | 0.863438 | 2.488748e-64 | -8.615850e-47 |
| Msa1354630 | Msa1365960 | 0.839184 | 1.844232e-57 | -8.615850e-47 |
| Msa1354630 | Msa1365970 | 0.934504 | 3.645596e-96 | -8.615850e-47 |
| Msa1354630 | Msa1366080 | 0.894033 | 3.605322e-75 | -8.615850e-47 |
| Msa1354630 | Msa1366090 | 0.839331 | 1.689194e-57 | -8.615850e-47 |
| Msa1354630 | Msa1368230 | 0.854586 | 1.115484e-61 | -8.615850e-47 |
| Msa1354630 | Msa1368240 | 0.941552 | 3.408916e-101 | -8.615850e-47 |
| Msa1354630 | Msa1380610 | 0.819900 | 9.111766e-53 | -8.615850e-47 |
| Msa1354630 | Msa1385410 | 0.877240 | 7.366953e-69 | -8.615850e-47 |
| Msa1354630 | Msa1385420 | 0.833632 | 4.769170e-56 | -8.615850e-47 |
| Msa1354630 | Msa1391090 | 0.831926 | 1.265221e-55 | -8.615850e-47 |
| Msa1354630 | Msa1391100 | 0.858188 | 9.776948e-63 | -8.615850e-47 |
| Msa1354630 | Msa1391110 | 0.963536 | 3.322546e-122 | -8.615850e-47 |
| Msa1354630 | Msa1391160 | 0.873487 | 1.415360e-67 | -8.615850e-47 |
| Msa1354630 | Msa1391170 | 0.855635 | 5.526276e-62 | -8.615850e-47 |
| Msa1354630 | Msa1391220 | 0.844213 | 8.687366e-59 | -8.615850e-47 |
| Msa1354630 | Msa1391230 | 0.841556 | 4.422563e-58 | -8.615850e-47 |
| Msa1354630 | Msa1391240 | 0.955133 | 6.102222e-113 | -8.615850e-47 |
| Msa1354630 | Msa1394030 | 0.853660 | 2.063493e-61 | -8.615850e-47 |
| Msa1354630 | Msa1394040 | 0.824265 | 8.864687e-54 | -8.615850e-47 |
| Msa1354630 | Msa1394060 | 0.800016 | 1.756595e-48 | -8.615850e-47 |
| Msa1354630 | Msa1394150 | 0.809146 | 2.185762e-50 | -8.615850e-47 |
| Msa1354630 | Msa1394160 | 0.848364 | 6.425790e-60 | -8.615850e-47 |
| Msa1354630 | Msa1394210 | 0.841318 | 5.110560e-58 | -8.615850e-47 |
| Msa1354630 | Msa1394250 | 0.811392 | 7.164393e-51 | -8.615850e-47 |
| Msa1354630 | Msa1460120 | 0.859053 | 5.396334e-63 | -8.615850e-47 |
| Msa1354630 | Msa1460130 | 0.872895 | 2.236896e-67 | -8.615850e-47 |
| Msa0126750 | Msa1354630 | 0.818345 | 2.057671e-52 | -8.615850e-47 |
| Msa0202640 | Msa1354630 | 0.847430 | 1.162446e-59 | -8.615850e-47 |
| Msa1305090 | Msa1354630 | 0.836290 | 1.020265e-56 | -8.615850e-47 |
| Msa1342040 | Msa1354630 | 0.811117 | 8.220095e-51 | -8.615850e-47 |
| Msa0370210 | Msa1354630 | 0.812352 | 4.427112e-51 | -8.615850e-47 |
| Msa0405420 | Msa1354630 | 0.866616 | 2.502996e-65 | -8.615850e-47 |
| Msa0405430 | Msa1354630 | 0.861080 | 1.319213e-63 | -8.615850e-47 |
| Msa0405440 | Msa1354630 | 0.927105 | 1.867665e-91 | -8.615850e-47 |
| Msa0405510 | Msa1354630 | 0.863083 | 3.206611e-64 | -8.615850e-47 |
| Msa0405520 | Msa1354630 | 0.835404 | 1.711952e-56 | -8.615850e-47 |
| Msa0405530 | Msa1354630 | 0.944165 | 3.214773e-103 | -8.615850e-47 |
| Msa0983630 | Msa1354630 | 0.885811 | 5.891007e-72 | -8.615850e-47 |
| Msa0983640 | Msa1354630 | 0.848278 | 6.785284e-60 | -8.615850e-47 |
| Msa1022050 | Msa1354630 | 0.899788 | 1.400180e-77 | -8.615850e-47 |
| Msa1022060 | Msa1354630 | 0.856464 | 3.160534e-62 | -8.615850e-47 |
| Msa1064410 | Msa1354630 | 0.870618 | 1.273569e-66 | -8.615850e-47 |
| Msa1086080 | Msa1354630 | 0.808133 | 3.597285e-50 | -8.615850e-47 |
| Msa1086090 | Msa1354630 | 0.838542 | 2.702921e-57 | -8.615850e-47 |
| Msa1086140 | Msa1354630 | 0.848842 | 4.735116e-60 | -8.615850e-47 |
| Msa1086190 | Msa1354630 | 0.820282 | 7.447481e-53 | -8.615850e-47 |
| Msa1086200 | Msa1354630 | 0.862022 | 6.802151e-64 | -8.615850e-47 |
| Msa1086270 | Msa1354630 | 0.836802 | 7.558948e-57 | -8.615850e-47 |
| Msa1086300 | Msa1354630 | 0.819647 | 1.040549e-52 | -8.615850e-47 |
| Msa1086320 | Msa1354630 | 0.817773 | 2.771897e-52 | -8.615850e-47 |
| Msa1086510 | Msa1354630 | 0.805839 | 1.099933e-49 | -8.615850e-47 |
| Msa1086550 | Msa1354630 | 0.837925 | 3.897355e-57 | -8.615850e-47 |
| Msa1086590 | Msa1354630 | 0.815213 | 1.037279e-51 | -8.615850e-47 |
| Msa1086600 | Msa1354630 | 0.880848 | 3.914606e-70 | -8.615850e-47 |
| Msa1086660 | Msa1354630 | 0.801354 | 9.367014e-49 | -8.615850e-47 |
| Msa1086670 | Msa1354630 | 0.809634 | 1.717767e-50 | -8.615850e-47 |
| Msa1086680 | Msa1354630 | 0.803229 | 3.851112e-49 | -8.615850e-47 |
| Msa1086720 | Msa1354630 | 0.866417 | 2.896234e-65 | -8.615850e-47 |
| Msa1086730 | Msa1354630 | 0.885976 | 5.108793e-72 | -8.615850e-47 |
| Msa1086740 | Msa1354630 | 0.952668 | 1.473196e-110 | -8.615850e-47 |
| Msa1086790 | Msa1354630 | 0.910587 | 1.585705e-82 | -8.615850e-47 |
| Msa1086800 | Msa1354630 | 0.867734 | 1.100133e-65 | -8.615850e-47 |
| Msa1086860 | Msa1354630 | 0.808634 | 2.812672e-50 | -8.615850e-47 |
| Msa1086890 | Msa1354630 | 0.816005 | 6.911760e-52 | -8.615850e-47 |
| Msa1086900 | Msa1354630 | 0.846972 | 1.552180e-59 | -8.615850e-47 |
| Msa1086960 | Msa1354630 | 0.927179 | 1.685373e-91 | -8.615850e-47 |
| Msa1086970 | Msa1354630 | 0.841638 | 4.209417e-58 | -8.615850e-47 |
| Msa1087030 | Msa1354630 | 0.867214 | 1.614272e-65 | -8.615850e-47 |
| Msa1087040 | Msa1354630 | 0.875054 | 4.169814e-68 | -8.615850e-47 |
| Msa1087050 | Msa1354630 | 0.948574 | 7.195832e-107 | -8.615850e-47 |
| Msa1087110 | Msa1354630 | 0.931961 | 1.739067e-94 | -8.615850e-47 |
| Msa1087120 | Msa1354630 | 0.849456 | 3.195795e-60 | -8.615850e-47 |
| Msa1091700 | Msa1354630 | 0.806856 | 6.713504e-50 | -8.615850e-47 |
| Msa0263770 | Msa1354630 | 0.872300 | 3.535823e-67 | -8.615850e-47 |
| Msa0268190 | Msa1354630 | 0.811991 | 5.307130e-51 | -8.615850e-47 |
| Msa0268210 | Msa1354630 | 0.825448 | 4.663162e-54 | -8.615850e-47 |
| Msa0268250 | Msa1354630 | 0.838654 | 2.529416e-57 | -8.615850e-47 |
| Msa0268260 | Msa1354630 | 0.855837 | 4.824044e-62 | -8.615850e-47 |
| Msa0268270 | Msa1354630 | 0.934322 | 4.829084e-96 | -8.615850e-47 |
| Msa0268300 | Msa1354630 | 0.886151 | 4.389065e-72 | -8.615850e-47 |
| Msa0268310 | Msa1354630 | 0.836566 | 8.682263e-57 | -8.615850e-47 |
| Msa0268430 | Msa1354630 | 0.825846 | 3.750618e-54 | -8.615850e-47 |
| Msa0268450 | Msa1354630 | 0.819675 | 1.025537e-52 | -8.615850e-47 |
| Msa0268560 | Msa1354630 | 0.807940 | 3.954563e-50 | -8.615850e-47 |
| Msa0268570 | Msa1354630 | 0.839746 | 1.317666e-57 | -8.615850e-47 |
| Msa0268580 | Msa1354630 | 0.802932 | 4.437354e-49 | -8.615850e-47 |
| Msa0268630 | Msa1354630 | 0.833467 | 5.246195e-56 | -8.615850e-47 |
| Msa0268660 | Msa1354630 | 0.808811 | 2.577372e-50 | -8.615850e-47 |
| Msa0268670 | Msa1354630 | 0.823842 | 1.113871e-53 | -8.615850e-47 |
| Msa0268740 | Msa1354630 | 0.818276 | 2.132971e-52 | -8.615850e-47 |
| Msa0268750 | Msa1354630 | 0.850258 | 1.907832e-60 | -8.615850e-47 |
| Msa0268830 | Msa1354630 | 0.858056 | 1.070312e-62 | -8.615850e-47 |
| Msa0268860 | Msa1354630 | 0.821242 | 4.480246e-53 | -8.615850e-47 |
| Msa0268880 | Msa1354630 | 0.806191 | 9.271378e-50 | -8.615850e-47 |
| Msa0268950 | Msa1354630 | 0.811533 | 6.677090e-51 | -8.615850e-47 |
| Msa0268960 | Msa1354630 | 0.860158 | 2.510764e-63 | -8.615850e-47 |
| Msa0269040 | Msa1354630 | 0.856227 | 3.710072e-62 | -8.615850e-47 |
| Msa0269050 | Msa1354630 | 0.802812 | 4.697214e-49 | -8.615850e-47 |
| Msa0269070 | Msa1354630 | 0.823964 | 1.042864e-53 | -8.615850e-47 |
| Msa0269090 | Msa1354630 | 0.803703 | 3.072306e-49 | -8.615850e-47 |
| Msa0269130 | Msa1354630 | 0.829995 | 3.767831e-55 | -8.615850e-47 |
| Msa0269140 | Msa1354630 | 0.876109 | 1.812711e-68 | -8.615850e-47 |
| Msa0269150 | Msa1354630 | 0.963361 | 5.443761e-122 | -8.615850e-47 |
| Msa0344180 | Msa1354630 | 0.801979 | 6.974361e-49 | -8.615850e-47 |
| Msa0344190 | Msa1354630 | 0.811050 | 8.497149e-51 | -8.615850e-47 |
| Msa0344310 | Msa1354630 | 0.830520 | 2.804259e-55 | -8.615850e-47 |
| Msa1143120 | Msa1354630 | 0.848464 | 6.030176e-60 | -8.615850e-47 |
| Msa1143170 | Msa1354630 | 0.833632 | 4.771034e-56 | -8.615850e-47 |
| Msa0484040 | Msa1354630 | 0.818398 | 2.001268e-52 | -8.615850e-47 |
| Msa0582510 | Msa1354630 | 0.850925 | 1.238874e-60 | -8.615850e-47 |
| Msa0582540 | Msa1354630 | 0.813340 | 2.689255e-51 | -8.615850e-47 |
| Msa0582640 | Msa1354630 | 0.820665 | 6.082203e-53 | -8.615850e-47 |
| Msa0582650 | Msa1354630 | 0.842854 | 2.005348e-58 | -8.615850e-47 |
| Msa0582690 | Msa1354630 | 0.853826 | 1.847964e-61 | -8.615850e-47 |
| Msa0582720 | Msa1354630 | 0.805201 | 1.496644e-49 | -8.615850e-47 |
| Msa0582730 | Msa1354630 | 0.818769 | 1.648559e-52 | -8.615850e-47 |
| Msa0582760 | Msa1354630 | 0.821622 | 3.660153e-53 | -8.615850e-47 |
| Msa0582770 | Msa1354630 | 0.845575 | 3.728202e-59 | -8.615850e-47 |
| Msa0582810 | Msa1354630 | 0.865604 | 5.233442e-65 | -8.615850e-47 |
| Msa0582840 | Msa1354630 | 0.819861 | 9.296523e-53 | -8.615850e-47 |
| Msa0582910 | Msa1354630 | 0.813683 | 2.260500e-51 | -8.615850e-47 |
| Msa0582920 | Msa1354630 | 0.845572 | 3.735778e-59 | -8.615850e-47 |
| Msa0591270 | Msa1354630 | 0.821190 | 4.605132e-53 | -8.615850e-47 |
| Msa0591290 | Msa1354630 | 0.820042 | 8.451065e-53 | -8.615850e-47 |
| Msa0591310 | Msa1354630 | 0.880191 | 6.723580e-70 | -8.615850e-47 |
| Msa0591350 | Msa1354630 | 0.915320 | 6.774055e-85 | -8.615850e-47 |
| Msa0591360 | Msa1354630 | 0.850937 | 1.229145e-60 | -8.615850e-47 |
| Msa0591380 | Msa1354630 | 0.840530 | 8.225493e-58 | -8.615850e-47 |
| Msa0867680 | Msa1354630 | 0.889348 | 2.625051e-73 | -8.615850e-47 |
| Msa0867690 | Msa1354630 | 0.858616 | 7.290489e-63 | -8.615850e-47 |
| Msa0876520 | Msa1354630 | 0.860081 | 2.647672e-63 | -8.615850e-47 |
| Msa0908220 | Msa1354630 | 0.854773 | 9.842420e-62 | -8.615850e-47 |
| Msa0908230 | Msa1354630 | 0.890927 | 6.323371e-74 | -8.615850e-47 |
| Msa0908240 | Msa1354630 | 0.957486 | 2.418004e-115 | -8.615850e-47 |
| Msa0908310 | Msa1354630 | 0.912209 | 2.529422e-83 | -8.615850e-47 |
| Msa0908320 | Msa1354630 | 0.858608 | 7.327927e-63 | -8.615850e-47 |
| Msa0908370 | Msa1354630 | 0.902523 | 8.886393e-79 | -8.615850e-47 |
| Msa0908380 | Msa1354630 | 0.852074 | 5.859546e-61 | -8.615850e-47 |
| Msa0908430 | Msa1354630 | 0.866864 | 2.086679e-65 | -8.615850e-47 |
| Msa0908440 | Msa1354630 | 0.887127 | 1.874301e-72 | -8.615850e-47 |
| Msa0908450 | Msa1354630 | 0.957496 | 2.356182e-115 | -8.615850e-47 |
| Msa0908480 | Msa1354630 | 0.867898 | 9.742230e-66 | -8.615850e-47 |
| Msa0908530 | Msa1354630 | 0.921573 | 3.006210e-88 | -8.615850e-47 |
| Msa0908540 | Msa1354630 | 0.859427 | 4.166590e-63 | -8.615850e-47 |
| Msa0908590 | Msa1354630 | 0.852699 | 3.889836e-61 | -8.615850e-47 |
| Msa0908600 | Msa1354630 | 0.851710 | 7.432655e-61 | -8.615850e-47 |
| Msa0908610 | Msa1354630 | 0.946654 | 3.055906e-105 | -8.615850e-47 |
| Msa0908650 | Msa1354630 | 0.855499 | 6.057330e-62 | -8.615850e-47 |
| Msa0908660 | Msa1354630 | 0.849075 | 4.081583e-60 | -8.615850e-47 |
| Msa0908670 | Msa1354630 | 0.956853 | 1.103282e-114 | -8.615850e-47 |
| Msa0908720 | Msa1354630 | 0.899872 | 1.287873e-77 | -8.615850e-47 |
| Msa0908730 | Msa1354630 | 0.832138 | 1.121785e-55 | -8.615850e-47 |
| Msa0911190 | Msa1354630 | 0.922173 | 1.387564e-88 | -8.615850e-47 |
| Msa0911200 | Msa1354630 | 0.849590 | 2.932372e-60 | -8.615850e-47 |
| Msa0911230 | Msa1354630 | 0.903602 | 2.927444e-79 | -8.615850e-47 |
| Msa0924830 | Msa1354630 | 0.840616 | 7.813209e-58 | -8.615850e-47 |
| Msa0924870 | Msa1354630 | 0.803537 | 3.324672e-49 | -8.615850e-47 |
| Msa0924880 | Msa1354630 | 0.827982 | 1.157998e-54 | -8.615850e-47 |
| Msa0924920 | Msa1354630 | 0.894348 | 2.682657e-75 | -8.615850e-47 |
| Msa0924930 | Msa1354630 | 0.850524 | 1.605772e-60 | -8.615850e-47 |
| Msa0924940 | Msa1354630 | 0.861606 | 9.115238e-64 | -8.615850e-47 |
| Msa0925100 | Msa1354630 | 0.926129 | 7.157766e-91 | -8.615850e-47 |
| Msa0925110 | Msa1354630 | 0.883593 | 3.934263e-71 | -8.615850e-47 |
| Msa0931070 | Msa1354630 | 0.836429 | 9.405995e-57 | -8.615850e-47 |
| Msa0931130 | Msa1354630 | 0.851234 | 1.013353e-60 | -8.615850e-47 |
| Msa0931160 | Msa1354630 | 0.808769 | 2.631719e-50 | -8.615850e-47 |
| Msa0931220 | Msa1354630 | 0.812070 | 5.100541e-51 | -8.615850e-47 |
| Msa0931230 | Msa1354630 | 0.827124 | 1.860749e-54 | -8.615850e-47 |
| Msa0931260 | Msa1354630 | 0.856550 | 2.983390e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354630 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1354630 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354630 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354630 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1354630 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1354630 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0014543:+402198 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0014543:-402231 | Msa1354630:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0014543:+402349 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0014543:-403193 | Msa1354630:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0014543:+402259 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0014543:+402429 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0014543:-402230 | Msa1354630:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0014543:+402232 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0014543:+402359 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0014543:-402333 | Msa1354630:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0014543:-403399 | Msa1354630:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0014543:+403524 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0014543:-402405 | Msa1354630:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0014543:+403201 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0014543:-402372 | Msa1354630:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0014543:+403550 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0014543:+402260 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0014543:-402259 | Msa1354630:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0014543:+403536 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0014543:-403592 | Msa1354630:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0014543:-403579 | Msa1354630:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0014543:+402419 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0014543:-402332 | Msa1354630:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0014543:-402493 | Msa1354630:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0014543:+402404 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0014543:-402378 | Msa1354630:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0014543:-402285 | Msa1354630:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0014543:+403551 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0014543:-403185 | Msa1354630:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0014543:-402331 | Msa1354630:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0014543:-402246 | Msa1354630:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0014543:+402360 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0014543:-402267 | Msa1354630:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0014543:+402389 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0014543:+403211 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0014543:-402229 | Msa1354630:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0014543:-402309 | Msa1354630:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0014543:-402330 | Msa1354630:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0014543:+402291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:402355-402374 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:402356-402375 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:402359-402378 | Msa1354630:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0014543:402355-402374 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0014543:402356-402375 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0014543:402359-402378 | Msa1354630:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:402795-402814 | Msa1354630:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0014543:402795-402814 | Msa1354630:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:402537-402556 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:403156-403175 | Msa1354630:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:403201-403220 | Msa1354630:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0014543:402537-402556 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0014543:403156-403175 | Msa1354630:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0014543:403201-403220 | Msa1354630:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:402315-402334 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:402316-402335 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:402435-402454 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:402436-402455 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:402437-402456 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:402538-402557 | Msa1354630:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:402543-402562 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:402680-402699 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:402903-402922 | Msa1354630:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:402979-402998 | Msa1354630:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:402980-402999 | Msa1354630:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:403047-403066 | Msa1354630:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:403057-403076 | Msa1354630:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:403120-403139 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:403202-403221 | Msa1354630:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:403256-403275 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:403456-403475 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0014543:402315-402334 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0014543:402316-402335 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0014543:402435-402454 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0014543:402436-402455 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0014543:402437-402456 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0014543:402538-402557 | Msa1354630:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0014543:402543-402562 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0014543:402680-402699 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0014543:402903-402922 | Msa1354630:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0014543:402979-402998 | Msa1354630:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0014543:402980-402999 | Msa1354630:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0014543:403047-403066 | Msa1354630:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0014543:403057-403076 | Msa1354630:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0014543:403120-403139 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0014543:403202-403221 | Msa1354630:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0014543:403256-403275 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0014543:403456-403475 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:402310-402329 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:402349-402368 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:402403-402422 | Msa1354630:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:402480-402499 | Msa1354630:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:403036-403055 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:403037-403056 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:403035-403054 | Msa1354630:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:403052-403071 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:403050-403069 | Msa1354630:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:403056-403075 | Msa1354630:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:403446-403465 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:403470-403489 | Msa1354630:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:403572-403591 | Msa1354630:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0014543:402310-402329 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0014543:402349-402368 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0014543:402403-402422 | Msa1354630:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0014543:402480-402499 | Msa1354630:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0014543:403036-403055 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0014543:403037-403056 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0014543:403035-403054 | Msa1354630:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0014543:403052-403071 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0014543:403050-403069 | Msa1354630:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0014543:403056-403075 | Msa1354630:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0014543:403446-403465 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0014543:403470-403489 | Msa1354630:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0014543:403572-403591 | Msa1354630:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:402348-402367 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:402467-402486 | Msa1354630:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:402473-402492 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:402571-402590 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:402834-402853 | Msa1354630:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:402862-402881 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:403034-403053 | Msa1354630:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:403258-403277 | Msa1354630:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:403286-403305 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:403288-403307 | Msa1354630:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:403356-403375 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:403366-403385 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:403367-403386 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:403424-403443 | Msa1354630:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:403445-403464 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:403469-403488 | Msa1354630:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:403471-403490 | Msa1354630:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:403573-403592 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:403571-403590 | Msa1354630:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:403573-403592 | Msa1354630:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0014543:402348-402367 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0014543:402467-402486 | Msa1354630:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0014543:402473-402492 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0014543:402571-402590 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0014543:402834-402853 | Msa1354630:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0014543:402862-402881 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0014543:403034-403053 | Msa1354630:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0014543:403258-403277 | Msa1354630:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0014543:403286-403305 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0014543:403288-403307 | Msa1354630:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0014543:403356-403375 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0014543:403366-403385 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0014543:403367-403386 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0014543:403424-403443 | Msa1354630:CDS | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0014543:403445-403464 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0014543:403469-403488 | Msa1354630:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0014543:403471-403490 | Msa1354630:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0014543:403573-403592 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0014543:403571-403590 | Msa1354630:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0014543:403573-403592 | Msa1354630:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:402223-402242 | Msa1354630:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:402254-402273 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:402269-402288 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:402274-402293 | Msa1354630:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:402281-402300 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:402347-402366 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:402466-402485 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:402520-402539 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:402524-402543 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:402645-402664 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:402644-402663 | Msa1354630:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:402992-403011 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:403013-403032 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:403206-403225 | Msa1354630:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:403365-403384 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:403376-403395 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:403386-403405 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:403416-403435 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:403430-403449 | Msa1354630:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:403472-403491 | Msa1354630:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:403514-403533 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:403517-403536 | Msa1354630:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0014543:402223-402242 | Msa1354630:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0014543:402254-402273 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0014543:402269-402288 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0014543:402274-402293 | Msa1354630:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0014543:402281-402300 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0014543:402347-402366 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0014543:402466-402485 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0014543:402520-402539 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0014543:402524-402543 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0014543:402645-402664 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0014543:402644-402663 | Msa1354630:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0014543:402992-403011 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0014543:403013-403032 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0014543:403206-403225 | Msa1354630:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0014543:403365-403384 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0014543:403376-403395 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0014543:403386-403405 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0014543:403416-403435 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0014543:403430-403449 | Msa1354630:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0014543:403472-403491 | Msa1354630:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0014543:403514-403533 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0014543:403517-403536 | Msa1354630:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:402255-402274 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:402346-402365 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:402558-402577 | Msa1354630:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:402562-402581 | Msa1354630:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:402568-402587 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:402616-402635 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:402617-402636 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:402618-402637 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:402617-402636 | Msa1354630:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:402963-402982 | Msa1354630:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:403067-403086 | Msa1354630:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:403211-403230 | Msa1354630:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:403228-403247 | Msa1354630:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:403301-403320 | Msa1354630:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:403476-403495 | Msa1354630:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:403477-403496 | Msa1354630:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:403493-403512 | Msa1354630:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:403545-403564 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0014543:402255-402274 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0014543:402346-402365 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0014543:402558-402577 | Msa1354630:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0014543:402562-402581 | Msa1354630:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0014543:402568-402587 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0014543:402616-402635 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0014543:402617-402636 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0014543:402618-402637 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0014543:402617-402636 | Msa1354630:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0014543:402963-402982 | Msa1354630:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0014543:403067-403086 | Msa1354630:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0014543:403211-403230 | Msa1354630:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0014543:403228-403247 | Msa1354630:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0014543:403301-403320 | Msa1354630:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0014543:403476-403495 | Msa1354630:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0014543:403477-403496 | Msa1354630:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0014543:403493-403512 | Msa1354630:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0014543:403545-403564 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:402345-402364 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:402995-403014 | Msa1354630:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:403270-403289 | Msa1354630:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:403309-403328 | Msa1354630:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:403401-403420 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:403483-403502 | Msa1354630:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:403546-403565 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:403543-403562 | Msa1354630:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:403556-403575 | Msa1354630:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0014543:402345-402364 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0014543:402995-403014 | Msa1354630:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0014543:403270-403289 | Msa1354630:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0014543:403309-403328 | Msa1354630:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0014543:403401-403420 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0014543:403483-403502 | Msa1354630:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0014543:403546-403565 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0014543:403543-403562 | Msa1354630:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0014543:403556-403575 | Msa1354630:CDS | 50.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:402344-402363 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:402945-402964 | Msa1354630:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:402946-402965 | Msa1354630:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:402954-402973 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:403397-403416 | Msa1354630:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:403535-403554 | Msa1354630:intron | 55.0% | |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0014543:402344-402363 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0014543:402945-402964 | Msa1354630:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0014543:402946-402965 | Msa1354630:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0014543:402954-402973 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0014543:403397-403416 | Msa1354630:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0014543:403535-403554 | Msa1354630:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:402594-402613 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:402611-402630 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:402609-402628 | Msa1354630:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:402950-402969 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:402947-402966 | Msa1354630:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:402951-402970 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0014543:402594-402613 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0014543:402611-402630 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0014543:402609-402628 | Msa1354630:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0014543:402950-402969 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0014543:402947-402966 | Msa1354630:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0014543:402951-402970 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:402604-402623 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0014543:402604-402623 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 402212 | 403612 | 402212 | ID=Msa1354630;Name=Msa1354630 |
| tig0014543 | mRNA | 402212 | 403612 | 402212 | ID=Msa1354630-mRNA-1;Parent=Msa1354630;Name=Msa1354630-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0014543 | exon | 403536 | 403612 | 403536 | ID=Msa1354630-mRNA-1:exon:9193;Parent=Msa1354630-mRNA-1 |
| tig0014543 | exon | 403400 | 403443 | 403400 | ID=Msa1354630-mRNA-1:exon:9192;Parent=Msa1354630-mRNA-1 |
| tig0014543 | exon | 403186 | 403244 | 403186 | ID=Msa1354630-mRNA-1:exon:9191;Parent=Msa1354630-mRNA-1 |
| tig0014543 | exon | 402212 | 402505 | 402212 | ID=Msa1354630-mRNA-1:exon:9190;Parent=Msa1354630-mRNA-1 |
| tig0014543 | CDS | 403536 | 403612 | 403536 | ID=Msa1354630-mRNA-1:cds;Parent=Msa1354630-mRNA-1 |
| tig0014543 | CDS | 403400 | 403443 | 403400 | ID=Msa1354630-mRNA-1:cds;Parent=Msa1354630-mRNA-1 |
| tig0014543 | CDS | 403186 | 403244 | 403186 | ID=Msa1354630-mRNA-1:cds;Parent=Msa1354630-mRNA-1 |
| tig0014543 | CDS | 402212 | 402505 | 402212 | ID=Msa1354630-mRNA-1:cds;Parent=Msa1354630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
