AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365890 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 2.15e-76 231
Msa1365890 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 2.15e-76 231
Msa1365890 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 2.15e-76 231
Msa1365890 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 7.90e-28 103
Msa1365890 MtrunA17_CPg0492431 96.154 52 2 0 273 324 4 55 5.44e-25 102
Msa1365890 MtrunA17_Chr3g0090851 96.154 52 2 0 273 324 4 55 5.44e-25 102
Msa1365890 MtrunA17_Chr4g0016091 96.154 52 2 0 273 324 4 55 5.44e-25 102
Msa1365890 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 5.07e-15 68.2
Msa1365890 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.73e-14 65.9
Msa1365890 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 1.04e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365890 ATCG00900.1 92.424 132 6 1 144 271 23 154 9.11e-82 245
Msa1365890 ATCG01240.1 92.424 132 6 1 144 271 23 154 9.11e-82 245
Msa1365890 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.23e-14 67.4
Msa1365890 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.23e-14 67.4
Msa1365890 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.20e-11 62.4
Msa1365890 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.20e-11 62.4

Find 69 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0018442:-20623 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0018442:+22807 Msa1365890:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0018442:+21853 Msa1365890:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0018442:+22881 Msa1365890:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0018442:+21499 Msa1365890:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0018442:-21841 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0018442:+22908 Msa1365890:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0018442:+20686 Msa1365890:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0018442:+22947 Msa1365890:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0018442:-22433 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0018442:+21870 Msa1365890:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0018442:-22919 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0018442:-22733 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0018442:-22460 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0018442:-22726 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0018442:-20622 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0018442:+22777 Msa1365890:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0018442:-22937 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0018442:-21838 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0018442:-21879 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0018442:-21837 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0018442:+21836 Msa1365890:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0018442:-20662 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0018442:-20641 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0018442:-22816 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0018442:-20650 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0018442:-21491 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0018442:-22432 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0018442:+22433 Msa1365890:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0018442:+22679 Msa1365890:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0018442:+20590 Msa1365890:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0018442:-20670 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0018442:+21835 Msa1365890:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0018442:+22927 Msa1365890:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0018442:+22611 Msa1365890:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0018442:+22870 Msa1365890:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0018442:+22965 Msa1365890:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0018442:-22817 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0018442:-20678 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0018442:-23310 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0018442:+22360 Msa1365890:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0018442:-23478 None:intergenic
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0018442:+22922 Msa1365890:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0018442:+20591 Msa1365890:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0018442:+22921 Msa1365890:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0018442:+22407 Msa1365890:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0018442:+21507 Msa1365890:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0018442:+22361 Msa1365890:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0018442:+22971 Msa1365890:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0018442:+22446 Msa1365890:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0018442:-20663 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0018442:-22888 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0018442:-20620 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0018442:+22425 Msa1365890:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0018442:-21481 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0018442:+21837 Msa1365890:CDS
ATAACGCGCTGTTGTTCCGA+TGG 0.627210 tig0018442:+23462 Msa1365890:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0018442:-20621 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0018442:-20647 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0018442:-21458 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0018442:+22383 Msa1365890:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0018442:+22633 Msa1365890:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0018442:+22362 Msa1365890:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0018442:-20619 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0018442:-20661 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0018442:-22401 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0018442:+22737 Msa1365890:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0018442:+22819 Msa1365890:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0018442:-21455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0018442:20872-20891 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0018442:20881-20900 Msa1365890:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0018442:21246-21265 None:intergenic 10.0%
!!! AAAATGTAAATTTTTTTCTT+AGG + tig0018442:21249-21268 Msa1365890:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0018442:20882-20901 Msa1365890:intron 15.0%
!!! GAAAAAAATTTACATTTTTC+AGG - tig0018442:21247-21266 None:intergenic 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0018442:21685-21704 Msa1365890:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0018442:22516-22535 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0018442:22517-22536 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0018442:22518-22537 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0018442:23192-23211 Msa1365890:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0018442:20625-20644 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0018442:20626-20645 None:intergenic 20.0%
!!! TCAGTTTTTTTTTTTTCGAA+GGG - tig0018442:20815-20834 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0018442:20934-20953 Msa1365890:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0018442:21084-21103 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0018442:21084-21103 Msa1365890:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0018442:21427-21446 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0018442:22046-22065 Msa1365890:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0018442:22091-22110 Msa1365890:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0018442:22514-22533 Msa1365890:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0018442:23089-23108 Msa1365890:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0018442:23183-23202 Msa1365890:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0018442:23203-23222 Msa1365890:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0018442:20624-20643 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTTCGAAG+GGG - tig0018442:20814-20833 None:intergenic 25.0%
!!! GTCAGTTTTTTTTTTTTCGA+AGG - tig0018442:20816-20835 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0018442:20924-20943 Msa1365890:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0018442:20940-20959 Msa1365890:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0018442:20989-21008 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0018442:21035-21054 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0018442:21083-21102 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0018442:21101-21120 Msa1365890:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0018442:21206-21225 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0018442:21207-21226 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0018442:21325-21344 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0018442:21326-21345 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0018442:21327-21346 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0018442:21428-21447 Msa1365890:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0018442:21433-21452 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0018442:21570-21589 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0018442:21793-21812 Msa1365890:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0018442:21869-21888 Msa1365890:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0018442:21870-21889 Msa1365890:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0018442:21937-21956 Msa1365890:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0018442:21947-21966 Msa1365890:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0018442:22010-22029 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0018442:22092-22111 Msa1365890:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0018442:22146-22165 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0018442:22346-22365 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0018442:22497-22516 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0018442:22603-22622 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0018442:22611-22630 Msa1365890:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0018442:22641-22660 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0018442:23075-23094 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0018442:23362-23381 None:intergenic 25.0%
GACCATATAATATTTATGGG+GGG - tig0018442:20622-20641 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0018442:20623-20642 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0018442:20706-20725 Msa1365890:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0018442:20707-20726 Msa1365890:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0018442:20984-21003 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0018442:20984-21003 Msa1365890:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0018442:21034-21053 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0018442:21036-21055 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0018442:21201-21220 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0018442:21240-21259 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0018442:21293-21312 Msa1365890:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0018442:21370-21389 Msa1365890:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0018442:21926-21945 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0018442:21927-21946 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0018442:21925-21944 Msa1365890:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0018442:21942-21961 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0018442:21940-21959 Msa1365890:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0018442:21946-21965 Msa1365890:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0018442:22336-22355 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0018442:22360-22379 Msa1365890:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0018442:22462-22481 Msa1365890:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0018442:22589-22608 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0018442:22598-22617 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0018442:22633-22652 Msa1365890:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0018442:22647-22666 Msa1365890:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0018442:22679-22698 Msa1365890:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0018442:22769-22788 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0018442:22908-22927 Msa1365890:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0018442:23047-23066 Msa1365890:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0018442:23057-23076 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0018442:23063-23082 Msa1365890:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0018442:23137-23156 Msa1365890:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0018442:23313-23332 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0018442:23312-23331 Msa1365890:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0018442:23329-23348 Msa1365890:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0018442:23351-23370 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0018442:23403-23422 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0018442:23403-23422 Msa1365890:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0018442:20617-20636 Msa1365890:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0018442:20686-20705 Msa1365890:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0018442:20713-20732 Msa1365890:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0018442:20714-20733 Msa1365890:intron 35.0%
!!! TTTTTTTTTCGAAGGGGCAA+CGG - tig0018442:20808-20827 None:intergenic 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0018442:20831-20850 Msa1365890:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0018442:20908-20927 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0018442:21239-21258 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0018442:21357-21376 Msa1365890:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0018442:21363-21382 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0018442:21461-21480 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0018442:21724-21743 Msa1365890:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0018442:21752-21771 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0018442:21924-21943 Msa1365890:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0018442:22148-22167 Msa1365890:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0018442:22176-22195 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0018442:22178-22197 Msa1365890:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0018442:22246-22265 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0018442:22256-22275 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0018442:22257-22276 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0018442:22314-22333 Msa1365890:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0018442:22335-22354 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0018442:22359-22378 Msa1365890:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0018442:22361-22380 Msa1365890:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0018442:22463-22482 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0018442:22461-22480 Msa1365890:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0018442:22463-22482 Msa1365890:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0018442:22736-22755 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0018442:22736-22755 Msa1365890:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0018442:22768-22787 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0018442:22820-22839 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0018442:22965-22984 Msa1365890:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0018442:23012-23031 Msa1365890:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0018442:23348-23367 Msa1365890:CDS 35.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0018442:20843-20862 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0018442:21114-21133 Msa1365890:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0018442:21145-21164 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0018442:21160-21179 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0018442:21165-21184 Msa1365890:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0018442:21172-21191 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0018442:21238-21257 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0018442:21356-21375 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0018442:21410-21429 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0018442:21414-21433 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0018442:21535-21554 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0018442:21534-21553 Msa1365890:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0018442:21882-21901 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0018442:21903-21922 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0018442:22096-22115 Msa1365890:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0018442:22255-22274 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0018442:22266-22285 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0018442:22276-22295 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0018442:22306-22325 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0018442:22320-22339 Msa1365890:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0018442:22362-22381 Msa1365890:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0018442:22404-22423 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0018442:22407-22426 Msa1365890:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0018442:22735-22754 Msa1365890:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0018442:22737-22756 Msa1365890:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0018442:22777-22796 Msa1365890:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0018442:22807-22826 Msa1365890:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0018442:22819-22838 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0018442:22819-22838 Msa1365890:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0018442:22849-22868 Msa1365890:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0018442:22881-22900 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0018442:22881-22900 Msa1365890:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0018442:22891-22910 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0018442:22922-22941 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0018442:22922-22941 Msa1365890:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0018442:22958-22977 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0018442:23027-23046 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0018442:23156-23175 Msa1365890:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0018442:23157-23176 Msa1365890:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0018442:20590-20609 Msa1365890:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0018442:20644-20663 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0018442:20664-20683 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0018442:20665-20684 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0018442:20673-20692 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0018442:20681-20700 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0018442:20973-20992 Msa1365890:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0018442:21146-21165 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0018442:21237-21256 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0018442:21448-21467 Msa1365890:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0018442:21452-21471 Msa1365890:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0018442:21458-21477 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0018442:21506-21525 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0018442:21507-21526 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0018442:21508-21527 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0018442:21507-21526 Msa1365890:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0018442:21853-21872 Msa1365890:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0018442:21957-21976 Msa1365890:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0018442:22101-22120 Msa1365890:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0018442:22118-22137 Msa1365890:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0018442:22191-22210 Msa1365890:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0018442:22366-22385 Msa1365890:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0018442:22367-22386 Msa1365890:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0018442:22383-22402 Msa1365890:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0018442:22435-22454 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0018442:22541-22560 Msa1365890:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0018442:22729-22748 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0018442:22841-22860 Msa1365890:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0018442:22856-22875 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0018442:22880-22899 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0018442:22921-22940 Msa1365890:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0018442:22971-22990 Msa1365890:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0018442:23158-23177 Msa1365890:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0018442:23481-23500 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0018442:20591-20610 Msa1365890:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0018442:20612-20631 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0018442:20650-20669 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0018442:20653-20672 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0018442:20666-20685 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0018442:20753-20772 Msa1365890:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0018442:20789-20808 None:intergenic 50.0%
! TTTTCGAAGGGGCAACGGAA+GGG - tig0018442:20803-20822 None:intergenic 50.0%
!! TTTTTCGAAGGGGCAACGGA+AGG - tig0018442:20804-20823 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0018442:21236-21255 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0018442:21885-21904 Msa1365890:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0018442:22160-22179 Msa1365890:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0018442:22199-22218 Msa1365890:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0018442:22291-22310 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0018442:22373-22392 Msa1365890:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0018442:22436-22455 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0018442:22433-22452 Msa1365890:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0018442:22446-22465 Msa1365890:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0018442:22545-22564 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0018442:22835-22854 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0018442:22940-22959 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0018442:22947-22966 Msa1365890:CDS 50.0%
ATAACGCGCTGTTGTTCCGA+TGG + tig0018442:23462-23481 Msa1365890:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0018442:20765-20784 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0018442:20768-20787 None:intergenic 55.0%
TTTCGAAGGGGCAACGGAAG+GGG - tig0018442:20802-20821 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0018442:21235-21254 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0018442:21835-21854 Msa1365890:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0018442:21836-21855 Msa1365890:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0018442:21844-21863 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0018442:22287-22306 Msa1365890:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0018442:22425-22444 Msa1365890:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0018442:22546-22565 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0018442:22546-22565 Msa1365890:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0018442:22927-22946 Msa1365890:CDS 55.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0018442:21484-21503 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0018442:21501-21520 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0018442:21499-21518 Msa1365890:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0018442:21840-21859 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0018442:21837-21856 Msa1365890:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0018442:21841-21860 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0018442:21494-21513 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0018442:22870-22889 Msa1365890:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 20576 23500 20576 ID=Msa1365890;Name=Msa1365890
tig0018442 mRNA 20576 23500 20576 ID=Msa1365890-mRNA-1;Parent=Msa1365890;Name=Msa1365890-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|334
tig0018442 exon 20576 20728 20576 ID=Msa1365890-mRNA-1:exon:14893;Parent=Msa1365890-mRNA-1
tig0018442 exon 21448 21537 21448 ID=Msa1365890-mRNA-1:exon:14894;Parent=Msa1365890-mRNA-1
tig0018442 exon 21798 21891 21798 ID=Msa1365890-mRNA-1:exon:14895;Parent=Msa1365890-mRNA-1
tig0018442 exon 22375 22467 22375 ID=Msa1365890-mRNA-1:exon:14896;Parent=Msa1365890-mRNA-1
tig0018442 exon 22622 22858 22622 ID=Msa1365890-mRNA-1:exon:14897;Parent=Msa1365890-mRNA-1
tig0018442 exon 22871 23017 22871 ID=Msa1365890-mRNA-1:exon:14898;Parent=Msa1365890-mRNA-1
tig0018442 exon 23310 23500 23310 ID=Msa1365890-mRNA-1:exon:14899;Parent=Msa1365890-mRNA-1
tig0018442 CDS 20576 20728 20576 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 21448 21537 21448 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 21798 21891 21798 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 22375 22467 22375 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 22622 22858 22622 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 22871 23017 22871 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
tig0018442 CDS 23310 23500 23310 ID=Msa1365890-mRNA-1:cds;Parent=Msa1365890-mRNA-1
Gene Sequence

>Msa1365890

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGA

Protein sequence

>Msa1365890

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITRCCSDGEKNP*