Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591310 | YP_009141761.1 | 84.641 | 306 | 7 | 2 | 1 | 266 | 106 | 411 | 2.65e-151 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591310 | sp|P0CC61|NU2C2_EUCGG | 83.113 | 302 | 8 | 2 | 1 | 266 | 124 | 418 | 1.52e-138 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa0591310 | 0.805345 | 1.396458e-49 | -8.615850e-47 |
| Msa0095190 | Msa0591310 | 0.801304 | 9.589101e-49 | -8.615850e-47 |
| Msa0202640 | Msa0591310 | 0.800736 | 1.253275e-48 | -8.615850e-47 |
| Msa0370210 | Msa0591310 | 0.800592 | 1.340714e-48 | -8.615850e-47 |
| Msa0405420 | Msa0591310 | 0.902561 | 8.550290e-79 | -8.615850e-47 |
| Msa0405430 | Msa0591310 | 0.842772 | 2.108480e-58 | -8.615850e-47 |
| Msa0405440 | Msa0591310 | 0.864341 | 1.303965e-64 | -8.615850e-47 |
| Msa0405510 | Msa0591310 | 0.910716 | 1.371220e-82 | -8.615850e-47 |
| Msa0405520 | Msa0591310 | 0.847282 | 1.276073e-59 | -8.615850e-47 |
| Msa0405530 | Msa0591310 | 0.857679 | 1.384507e-62 | -8.615850e-47 |
| Msa0263770 | Msa0591310 | 0.849083 | 4.058668e-60 | -8.615850e-47 |
| Msa0268250 | Msa0591310 | 0.866402 | 2.927811e-65 | -8.615850e-47 |
| Msa0268260 | Msa0591310 | 0.839451 | 1.572440e-57 | -8.615850e-47 |
| Msa0268270 | Msa0591310 | 0.858460 | 8.113594e-63 | -8.615850e-47 |
| Msa0268300 | Msa0591310 | 0.846435 | 2.176642e-59 | -8.615850e-47 |
| Msa0268310 | Msa0591310 | 0.876135 | 1.776552e-68 | -8.615850e-47 |
| Msa0268400 | Msa0591310 | 0.807620 | 4.623535e-50 | -8.615850e-47 |
| Msa0268560 | Msa0591310 | 0.803555 | 3.296320e-49 | -8.615850e-47 |
| Msa0268750 | Msa0591310 | 0.802658 | 5.054429e-49 | -8.615850e-47 |
| Msa0268830 | Msa0591310 | 0.800133 | 1.662515e-48 | -8.615850e-47 |
| Msa0268950 | Msa0591310 | 0.813975 | 1.949347e-51 | -8.615850e-47 |
| Msa0268960 | Msa0591310 | 0.811781 | 5.896585e-51 | -8.615850e-47 |
| Msa0269130 | Msa0591310 | 0.877431 | 6.317822e-69 | -8.615850e-47 |
| Msa0269140 | Msa0591310 | 0.850437 | 1.699032e-60 | -8.615850e-47 |
| Msa0269150 | Msa0591310 | 0.858179 | 9.838310e-63 | -8.615850e-47 |
| Msa0344180 | Msa0591310 | 0.806537 | 7.838074e-50 | -8.615850e-47 |
| Msa0344190 | Msa0591310 | 0.805807 | 1.116613e-49 | -8.615850e-47 |
| Msa0582640 | Msa0591310 | 0.815135 | 1.079306e-51 | -8.615850e-47 |
| Msa0582690 | Msa0591310 | 0.800400 | 1.467282e-48 | -8.615850e-47 |
| Msa0582760 | Msa0591310 | 0.808929 | 2.432382e-50 | -8.615850e-47 |
| Msa0582810 | Msa0591310 | 0.804642 | 1.958444e-49 | -8.615850e-47 |
| Msa0591290 | Msa0591310 | 0.817349 | 3.452721e-52 | -8.615850e-47 |
| Msa0591310 | Msa0591350 | 0.855514 | 5.997013e-62 | -8.615850e-47 |
| Msa0591310 | Msa0591360 | 0.904479 | 1.175507e-79 | -8.615850e-47 |
| Msa0591310 | Msa0591380 | 0.820195 | 7.798987e-53 | -8.615850e-47 |
| Msa0591310 | Msa0611450 | 0.816187 | 6.293248e-52 | -8.615850e-47 |
| Msa0591310 | Msa0694170 | 0.803573 | 3.267954e-49 | -8.615850e-47 |
| Msa0591310 | Msa0867680 | 0.832172 | 1.100180e-55 | -8.615850e-47 |
| Msa0591310 | Msa0867690 | 0.887652 | 1.182476e-72 | -8.615850e-47 |
| Msa0591310 | Msa0876520 | 0.826172 | 3.138310e-54 | -8.615850e-47 |
| Msa0591310 | Msa0908220 | 0.873310 | 1.624069e-67 | -8.615850e-47 |
| Msa0591310 | Msa0908230 | 0.849459 | 3.190038e-60 | -8.615850e-47 |
| Msa0591310 | Msa0908240 | 0.839804 | 1.272402e-57 | -8.615850e-47 |
| Msa0591310 | Msa0908310 | 0.849883 | 2.429873e-60 | -8.615850e-47 |
| Msa0591310 | Msa0908320 | 0.898801 | 3.715111e-77 | -8.615850e-47 |
| Msa0591310 | Msa0908370 | 0.840531 | 8.221684e-58 | -8.615850e-47 |
| Msa0591310 | Msa0908380 | 0.871550 | 6.273482e-67 | -8.615850e-47 |
| Msa0591310 | Msa0908430 | 0.880001 | 7.862233e-70 | -8.615850e-47 |
| Msa0591310 | Msa0908440 | 0.855868 | 4.727007e-62 | -8.615850e-47 |
| Msa0591310 | Msa0908450 | 0.868144 | 8.119573e-66 | -8.615850e-47 |
| Msa0591310 | Msa0908530 | 0.863042 | 3.301532e-64 | -8.615850e-47 |
| Msa0591310 | Msa0908540 | 0.902910 | 5.974994e-79 | -8.615850e-47 |
| Msa0591310 | Msa0908590 | 0.865161 | 7.218765e-65 | -8.615850e-47 |
| Msa0591310 | Msa0908600 | 0.843504 | 1.345744e-58 | -8.615850e-47 |
| Msa0591310 | Msa0908610 | 0.837755 | 4.309295e-57 | -8.615850e-47 |
| Msa0591310 | Msa0908650 | 0.869660 | 2.622238e-66 | -8.615850e-47 |
| Msa0591310 | Msa0908660 | 0.844060 | 9.549631e-59 | -8.615850e-47 |
| Msa0591310 | Msa0908670 | 0.876114 | 1.806277e-68 | -8.615850e-47 |
| Msa0591310 | Msa0908720 | 0.846682 | 1.863406e-59 | -8.615850e-47 |
| Msa0591310 | Msa0908730 | 0.883956 | 2.892313e-71 | -8.615850e-47 |
| Msa0591310 | Msa0911190 | 0.834371 | 3.115686e-56 | -8.615850e-47 |
| Msa0591310 | Msa0911200 | 0.852960 | 3.275448e-61 | -8.615850e-47 |
| Msa0591310 | Msa0911230 | 0.828959 | 6.725991e-55 | -8.615850e-47 |
| Msa0591310 | Msa0924830 | 0.826382 | 2.797614e-54 | -8.615850e-47 |
| Msa0591310 | Msa0924930 | 0.845221 | 4.650052e-59 | -8.615850e-47 |
| Msa0591310 | Msa0924940 | 0.878785 | 2.120810e-69 | -8.615850e-47 |
| Msa0591310 | Msa0925100 | 0.861887 | 7.482194e-64 | -8.615850e-47 |
| Msa0591310 | Msa0925110 | 0.907423 | 5.148355e-81 | -8.615850e-47 |
| Msa0591310 | Msa0931220 | 0.804415 | 2.184269e-49 | -8.615850e-47 |
| Msa0591310 | Msa0931260 | 0.803812 | 2.915719e-49 | -8.615850e-47 |
| Msa0591310 | Msa0983630 | 0.843222 | 1.599610e-58 | -8.615850e-47 |
| Msa0591310 | Msa0983640 | 0.860277 | 2.310004e-63 | -8.615850e-47 |
| Msa0591310 | Msa1022050 | 0.839380 | 1.640852e-57 | -8.615850e-47 |
| Msa0591310 | Msa1022060 | 0.854516 | 1.168377e-61 | -8.615850e-47 |
| Msa0591310 | Msa1064410 | 0.803528 | 3.339540e-49 | -8.615850e-47 |
| Msa0591310 | Msa1086080 | 0.818417 | 1.982206e-52 | -8.615850e-47 |
| Msa0591310 | Msa1086140 | 0.806259 | 8.970776e-50 | -8.615850e-47 |
| Msa0591310 | Msa1086270 | 0.814115 | 1.815403e-51 | -8.615850e-47 |
| Msa0591310 | Msa1086550 | 0.874496 | 6.456112e-68 | -8.615850e-47 |
| Msa0591310 | Msa1086590 | 0.818260 | 2.151284e-52 | -8.615850e-47 |
| Msa0591310 | Msa1086600 | 0.890747 | 7.447386e-74 | -8.615850e-47 |
| Msa0591310 | Msa1086720 | 0.871231 | 8.000815e-67 | -8.615850e-47 |
| Msa0591310 | Msa1086730 | 0.843896 | 1.056915e-58 | -8.615850e-47 |
| Msa0591310 | Msa1086740 | 0.859511 | 3.933302e-63 | -8.615850e-47 |
| Msa0591310 | Msa1086790 | 0.838694 | 2.470148e-57 | -8.615850e-47 |
| Msa0591310 | Msa1086800 | 0.872810 | 2.388823e-67 | -8.615850e-47 |
| Msa0591310 | Msa1086890 | 0.810100 | 1.363023e-50 | -8.615850e-47 |
| Msa0591310 | Msa1086900 | 0.803938 | 2.744919e-49 | -8.615850e-47 |
| Msa0591310 | Msa1086960 | 0.868309 | 7.183493e-66 | -8.615850e-47 |
| Msa0591310 | Msa1086970 | 0.872451 | 3.147445e-67 | -8.615850e-47 |
| Msa0591310 | Msa1087030 | 0.868025 | 8.870655e-66 | -8.615850e-47 |
| Msa0591310 | Msa1087040 | 0.846806 | 1.722776e-59 | -8.615850e-47 |
| Msa0591310 | Msa1087050 | 0.863323 | 2.702024e-64 | -8.615850e-47 |
| Msa0591310 | Msa1087110 | 0.860201 | 2.436193e-63 | -8.615850e-47 |
| Msa0591310 | Msa1087120 | 0.877211 | 7.535030e-69 | -8.615850e-47 |
| Msa0591310 | Msa1098570 | 0.801189 | 1.012560e-48 | -8.615850e-47 |
| Msa0591310 | Msa1305090 | 0.804838 | 1.782217e-49 | -8.615850e-47 |
| Msa0591310 | Msa1342040 | 0.829562 | 4.803516e-55 | -8.615850e-47 |
| Msa0591310 | Msa1354420 | 0.836975 | 6.829259e-57 | -8.615850e-47 |
| Msa0591310 | Msa1354430 | 0.882747 | 8.036240e-71 | -8.615850e-47 |
| Msa0591310 | Msa1354480 | 0.892524 | 1.466600e-74 | -8.615850e-47 |
| Msa0591310 | Msa1354490 | 0.863133 | 3.093049e-64 | -8.615850e-47 |
| Msa0591310 | Msa1354500 | 0.859610 | 3.670840e-63 | -8.615850e-47 |
| Msa0591310 | Msa1354550 | 0.843638 | 1.238907e-58 | -8.615850e-47 |
| Msa0591310 | Msa1354560 | 0.887230 | 1.712922e-72 | -8.615850e-47 |
| Msa0591310 | Msa1354610 | 0.895894 | 6.210424e-76 | -8.615850e-47 |
| Msa0591310 | Msa1354620 | 0.859893 | 3.017914e-63 | -8.615850e-47 |
| Msa0591310 | Msa1354630 | 0.880191 | 6.723580e-70 | -8.615850e-47 |
| Msa0591310 | Msa1354680 | 0.850656 | 1.474543e-60 | -8.615850e-47 |
| Msa0591310 | Msa1354690 | 0.839738 | 1.323724e-57 | -8.615850e-47 |
| Msa0591310 | Msa1354700 | 0.885013 | 1.172059e-71 | -8.615850e-47 |
| Msa0591310 | Msa1354740 | 0.891969 | 2.443266e-74 | -8.615850e-47 |
| Msa0591310 | Msa1354750 | 0.850977 | 1.197523e-60 | -8.615850e-47 |
| Msa0591310 | Msa1354760 | 0.862430 | 5.096506e-64 | -8.615850e-47 |
| Msa0591310 | Msa1354810 | 0.849483 | 3.141030e-60 | -8.615850e-47 |
| Msa0591310 | Msa1354820 | 0.895530 | 8.780399e-76 | -8.615850e-47 |
| Msa0591310 | Msa1354910 | 0.801416 | 9.096539e-49 | -8.615850e-47 |
| Msa0591310 | Msa1354980 | 0.856971 | 2.241701e-62 | -8.615850e-47 |
| Msa0591310 | Msa1354990 | 0.894845 | 1.680182e-75 | -8.615850e-47 |
| Msa0591310 | Msa1355080 | 0.813635 | 2.316368e-51 | -8.615850e-47 |
| Msa0591310 | Msa1355090 | 0.800651 | 1.303818e-48 | -8.615850e-47 |
| Msa0591310 | Msa1365890 | 0.839869 | 1.224074e-57 | -8.615850e-47 |
| Msa0591310 | Msa1365900 | 0.844548 | 7.063675e-59 | -8.615850e-47 |
| Msa0591310 | Msa1365950 | 0.890746 | 7.454375e-74 | -8.615850e-47 |
| Msa0591310 | Msa1365960 | 0.841318 | 5.108973e-58 | -8.615850e-47 |
| Msa0591310 | Msa1365970 | 0.850352 | 1.794839e-60 | -8.615850e-47 |
| Msa0591310 | Msa1366080 | 0.845959 | 2.932340e-59 | -8.615850e-47 |
| Msa0591310 | Msa1366090 | 0.860293 | 2.285849e-63 | -8.615850e-47 |
| Msa0591310 | Msa1368230 | 0.842920 | 1.925078e-58 | -8.615850e-47 |
| Msa0591310 | Msa1368240 | 0.859342 | 4.419526e-63 | -8.615850e-47 |
| Msa0591310 | Msa1380600 | 0.805500 | 1.295454e-49 | -8.615850e-47 |
| Msa0591310 | Msa1380610 | 0.804436 | 2.161731e-49 | -8.615850e-47 |
| Msa0591310 | Msa1385410 | 0.833309 | 5.743403e-56 | -8.615850e-47 |
| Msa0591310 | Msa1385420 | 0.846341 | 2.308777e-59 | -8.615850e-47 |
| Msa0591310 | Msa1391090 | 0.877107 | 8.194374e-69 | -8.615850e-47 |
| Msa0591310 | Msa1391100 | 0.843006 | 1.826216e-58 | -8.615850e-47 |
| Msa0591310 | Msa1391110 | 0.849645 | 2.831922e-60 | -8.615850e-47 |
| Msa0591310 | Msa1391160 | 0.843726 | 1.173507e-58 | -8.615850e-47 |
| Msa0591310 | Msa1391170 | 0.868740 | 5.214637e-66 | -8.615850e-47 |
| Msa0591310 | Msa1391220 | 0.865007 | 8.066413e-65 | -8.615850e-47 |
| Msa0591310 | Msa1391230 | 0.825542 | 4.429479e-54 | -8.615850e-47 |
| Msa0591310 | Msa1391240 | 0.861707 | 8.490241e-64 | -8.615850e-47 |
| Msa0591310 | Msa1394030 | 0.804857 | 1.766293e-49 | -8.615850e-47 |
| Msa0591310 | Msa1394040 | 0.801778 | 7.667188e-49 | -8.615850e-47 |
| Msa0591310 | Msa1394210 | 0.806288 | 8.845163e-50 | -8.615850e-47 |
| Msa0591310 | Msa1460120 | 0.848476 | 5.982902e-60 | -8.615850e-47 |
| Msa0591310 | Msa1460130 | 0.897474 | 1.357336e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591310 | MtrunA17_CPg0492451 | 99.107 | 112 | 1 | 0 | 155 | 266 | 1 | 112 | 7.21e-72 | 219 |
| Msa0591310 | MtrunA17_Chr4g0016071 | 99.107 | 112 | 1 | 0 | 155 | 266 | 1 | 112 | 7.21e-72 | 219 |
| Msa0591310 | MtrunA17_Chr3g0090871 | 97.248 | 109 | 3 | 0 | 155 | 263 | 1 | 109 | 2.31e-69 | 213 |
| Msa0591310 | MtrunA17_Chr1g0195541 | 72.727 | 132 | 0 | 1 | 1 | 96 | 1 | 132 | 1.60e-56 | 179 |
| Msa0591310 | MtrunA17_CPg0492431 | 72.727 | 132 | 0 | 1 | 1 | 96 | 106 | 237 | 4.14e-55 | 179 |
| Msa0591310 | MtrunA17_Chr3g0090851 | 72.727 | 132 | 0 | 1 | 1 | 96 | 106 | 237 | 4.14e-55 | 179 |
| Msa0591310 | MtrunA17_Chr4g0016091 | 72.727 | 132 | 0 | 1 | 1 | 96 | 106 | 237 | 4.14e-55 | 179 |
| Msa0591310 | MtrunA17_Chr0c03g0489881 | 35.057 | 174 | 102 | 4 | 93 | 266 | 2 | 164 | 4.83e-20 | 86.3 |
| Msa0591310 | MtrunA17_MTg0491931 | 35.057 | 174 | 102 | 4 | 93 | 266 | 2 | 164 | 4.83e-20 | 86.3 |
| Msa0591310 | MtrunA17_Chr6g0466221 | 24.638 | 276 | 187 | 8 | 6 | 265 | 147 | 417 | 1.54e-12 | 67.8 |
| Msa0591310 | MtrunA17_CPg0492181 | 23.355 | 304 | 176 | 9 | 6 | 265 | 147 | 437 | 6.35e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591310 | ATCG00890.1 | 82.119 | 302 | 11 | 2 | 1 | 266 | 1 | 295 | 6.40e-140 | 399 |
| Msa0591310 | ATCG01250.1 | 82.119 | 302 | 11 | 2 | 1 | 266 | 1 | 295 | 6.40e-140 | 399 |
| Msa0591310 | AT2G07689.1 | 35.057 | 174 | 102 | 4 | 93 | 266 | 2 | 164 | 5.89e-20 | 86.3 |
Find 61 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGATATGTAATTAT+TGG | 0.189063 | 4_2:+15594861 | Msa0591310:CDS |
| CATGGTTTCTCTTGGCTATA+TGG | 0.197078 | 4_2:+15593770 | Msa0591310:CDS |
| TGGGGCAAGCTCTTCTATTC+TGG | 0.197255 | 4_2:+15593745 | Msa0591310:CDS |
| GCTATTCTTAGCATGCTATT+AGG | 0.213688 | 4_2:+15594777 | Msa0591310:CDS |
| TTTGCTTGCATTGTGTTATT+TGG | 0.223841 | 4_2:+15594966 | Msa0591310:CDS |
| TTCGGAAAACTCATTTATTC+TGG | 0.245226 | 4_2:+15595113 | Msa0591310:CDS |
| ATTAGACCGTACATCTTTCT+TGG | 0.278852 | 4_2:-15593693 | None:intergenic |
| TCGTTTGATGAGAAATAAAA+AGG | 0.282633 | 4_2:-15594729 | None:intergenic |
| AGCTCTTCTATTCTGGTTCA+TGG | 0.287942 | 4_2:+15593752 | Msa0591310:CDS |
| CTATTCTTAGCATGCTATTA+GGG | 0.301257 | 4_2:+15594778 | Msa0591310:CDS |
| TATTCGTCCATAGGTCAAAT+TGG | 0.303171 | 4_2:+15594846 | Msa0591310:CDS |
| GCAAGCAGGCCTATATTTCT+TGG | 0.316441 | 4_2:+15595144 | Msa0591310:CDS |
| GCATACGTTTCATGCTTGTT+TGG | 0.326865 | 4_2:-15594818 | None:intergenic |
| TTCTGGTTCATGGTTTCTCT+TGG | 0.336946 | 4_2:+15593762 | Msa0591310:CDS |
| TTATGCTCCTATCTACTATC+TGG | 0.367530 | 4_2:+15593665 | Msa0591310:CDS |
| CATACGTTTCATGCTTGTTT+GGG | 0.369828 | 4_2:-15594817 | None:intergenic |
| GTAATTATTGGAATAATTGT+TGG | 0.373428 | 4_2:+15594873 | Msa0591310:CDS |
| CTATATTTCTTGGTTTCAAT+AGG | 0.375317 | 4_2:+15595154 | Msa0591310:CDS |
| CCCTAGCCCCTTCTCATCAA+TGG | 0.393307 | 4_2:+15593917 | Msa0591310:CDS |
| GTGTTATTTGGTCTACGTAC+TGG | 0.413420 | 4_2:+15594978 | Msa0591310:CDS |
| TATTCATCACTGTAGGAATT+GGG | 0.417349 | 4_2:+15593884 | Msa0591310:intron |
| TACATATCCAATTTGACCTA+TGG | 0.420081 | 4_2:-15594853 | None:intergenic |
| TTCTGGTGTGGATGGCAAGC+AGG | 0.432708 | 4_2:+15595130 | Msa0591310:CDS |
| CTATTGAAACCAAGAAATAT+AGG | 0.436794 | 4_2:-15595153 | None:intergenic |
| GCCCTATGTCTATTATCCTT+AGG | 0.440840 | 4_2:+15595065 | Msa0591310:CDS |
| CTCATTTATTCTGGTGTGGA+TGG | 0.441671 | 4_2:+15595122 | Msa0591310:CDS |
| GGAGGTCTTCCTCCACTAGC+AGG | 0.443104 | 4_2:+15595086 | Msa0591310:CDS |
| AGCAAAAGTTCCTAGATTCA+TGG | 0.448640 | 4_2:-15594949 | None:intergenic |
| TTCTATATCTCCATGAATCT+AGG | 0.460861 | 4_2:+15594939 | Msa0591310:CDS |
| TACTATGAAATATTTACTCA+TGG | 0.474204 | 4_2:+15593721 | Msa0591310:CDS |
| GGTATATCCAGATAGTAGAT+AGG | 0.488329 | 4_2:-15593672 | None:intergenic |
| TGAAATATTTACTCATGGGT+GGG | 0.506663 | 4_2:+15593726 | Msa0591310:CDS |
| TCCATTGATGAGAAGGGGCT+AGG | 0.510524 | 4_2:-15593918 | None:intergenic |
| ATGCTTGCTTATTCGTCCAT+AGG | 0.517225 | 4_2:+15594837 | Msa0591310:CDS |
| TTTATTTCTCATCAAACGAA+TGG | 0.522523 | 4_2:+15594733 | Msa0591310:CDS |
| GATAACATTCGAGATTATGC+AGG | 0.531827 | 4_2:+15595005 | Msa0591310:CDS |
| ATGAAATATTTACTCATGGG+TGG | 0.533610 | 4_2:+15593725 | Msa0591310:CDS |
| GAAATATTTACTCATGGGTG+GGG | 0.537789 | 4_2:+15593727 | Msa0591310:CDS |
| CAGGAGTCCATTGATGAGAA+GGG | 0.542754 | 4_2:-15593924 | None:intergenic |
| AAAACTCATTTATTCTGGTG+TGG | 0.547449 | 4_2:+15595118 | Msa0591310:CDS |
| ATAATTGTTGGAGACTCAAA+TGG | 0.548093 | 4_2:+15594885 | Msa0591310:CDS |
| TCAGGAGTCCATTGATGAGA+AGG | 0.551074 | 4_2:-15593925 | None:intergenic |
| AGAAAAGCAACGACTGGAGT+CGG | 0.551106 | 4_2:-15594651 | None:intergenic |
| CCATTGATGAGAAGGGGCTA+GGG | 0.552174 | 4_2:-15593917 | None:intergenic |
| TTCATATTAACCGCTACTCT+AGG | 0.552302 | 4_2:+15593578 | Msa0591310:CDS |
| TCCTAAGGATAATAGACATA+GGG | 0.556597 | 4_2:-15595066 | None:intergenic |
| CTCCTAAGGATAATAGACAT+AGG | 0.558738 | 4_2:-15595067 | None:intergenic |
| GAAAGATGTACGGTCTAATG+AGG | 0.565206 | 4_2:+15593697 | Msa0591310:CDS |
| GGAGAGTCAGAGTCGAAAAG+AGG | 0.572366 | 4_2:-15594630 | None:intergenic |
| ATAGCATGCTAAGAATAGCT+AGG | 0.576533 | 4_2:-15594773 | None:intergenic |
| TAGTGGAGGAAGACCTCCTA+AGG | 0.577052 | 4_2:-15595081 | None:intergenic |
| ACAGAAAGAAAAGCAACGAC+TGG | 0.577795 | 4_2:-15594657 | None:intergenic |
| ACTATGAAATATTTACTCAT+GGG | 0.584827 | 4_2:+15593722 | Msa0591310:CDS |
| CTATGTCTATTATCCTTAGG+AGG | 0.590927 | 4_2:+15595068 | Msa0591310:CDS |
| TTGAATGAGAGAAAGAAGTG+AGG | 0.599130 | 4_2:+15594604 | Msa0591310:intron |
| ATATTAACCGCTACTCTAGG+AGG | 0.609728 | 4_2:+15593581 | Msa0591310:CDS |
| GATATACCAAGAAAGATGTA+CGG | 0.625842 | 4_2:+15593687 | Msa0591310:CDS |
| ATTGTTGGAGACTCAAATGG+TGG | 0.626325 | 4_2:+15594888 | Msa0591310:CDS |
| AGGAGTCCATTGATGAGAAG+GGG | 0.632944 | 4_2:-15593923 | None:intergenic |
| AGGAATATCGAAAATTCGAG+TGG | 0.650147 | 4_2:-15594709 | None:intergenic |
| AAACATTCCTCCTAGAGTAG+CGG | 0.663526 | 4_2:-15593588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTTAAAATAACAATTA+AGG | + | chr4_2:15594081-15594100 | Msa0591310:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | + | chr4_2:15594393-15594412 | Msa0591310:intron | 15.0% |
| !!! | ACTTGTTAAAATAACAATTA+AGG | + | chr4_2:15594081-15594100 | Msa0591310:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | + | chr4_2:15594393-15594412 | Msa0591310:intron | 15.0% |
| !! | TACTATGAAATATTTACTCA+TGG | + | chr4_2:15593721-15593740 | Msa0591310:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | + | chr4_2:15593722-15593741 | Msa0591310:CDS | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | + | chr4_2:15594149-15594168 | Msa0591310:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | - | chr4_2:15594470-15594489 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | + | chr4_2:15594470-15594489 | Msa0591310:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | + | chr4_2:15594861-15594880 | Msa0591310:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | + | chr4_2:15594873-15594892 | Msa0591310:CDS | 20.0% |
| !! | TACTATGAAATATTTACTCA+TGG | + | chr4_2:15593721-15593740 | Msa0591310:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | + | chr4_2:15593722-15593741 | Msa0591310:CDS | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | + | chr4_2:15594149-15594168 | Msa0591310:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | - | chr4_2:15594470-15594489 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | + | chr4_2:15594470-15594489 | Msa0591310:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | + | chr4_2:15594861-15594880 | Msa0591310:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | + | chr4_2:15594873-15594892 | Msa0591310:CDS | 20.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | + | chr4_2:15594010-15594029 | Msa0591310:intron | 25.0% |
| ! | TAACAAGTAAAGTTATGTCT+TGG | - | chr4_2:15594069-15594088 | None:intergenic | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | + | chr4_2:15594150-15594169 | Msa0591310:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | - | chr4_2:15594181-15594200 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | - | chr4_2:15594209-15594228 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | + | chr4_2:15594476-15594495 | Msa0591310:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | - | chr4_2:15594545-15594564 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | + | chr4_2:15594549-15594568 | Msa0591310:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | - | chr4_2:15594732-15594751 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | + | chr4_2:15594733-15594752 | Msa0591310:CDS | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | + | chr4_2:15595031-15595050 | Msa0591310:CDS | 25.0% |
| ! | CTATTGAAACCAAGAAATAT+AGG | - | chr4_2:15595156-15595175 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | + | chr4_2:15594010-15594029 | Msa0591310:intron | 25.0% |
| ! | TAACAAGTAAAGTTATGTCT+TGG | - | chr4_2:15594069-15594088 | None:intergenic | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | + | chr4_2:15594150-15594169 | Msa0591310:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | - | chr4_2:15594181-15594200 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | - | chr4_2:15594209-15594228 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | + | chr4_2:15594476-15594495 | Msa0591310:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | - | chr4_2:15594545-15594564 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | + | chr4_2:15594549-15594568 | Msa0591310:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | - | chr4_2:15594732-15594751 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | + | chr4_2:15594733-15594752 | Msa0591310:CDS | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | + | chr4_2:15595031-15595050 | Msa0591310:CDS | 25.0% |
| ! | CTATTGAAACCAAGAAATAT+AGG | - | chr4_2:15595156-15595175 | None:intergenic | 25.0% |
| GATATACCAAGAAAGATGTA+CGG | + | chr4_2:15593687-15593706 | Msa0591310:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | + | chr4_2:15593725-15593744 | Msa0591310:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | + | chr4_2:15593726-15593745 | Msa0591310:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | + | chr4_2:15593883-15593902 | Msa0591310:intron | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | + | chr4_2:15593884-15593903 | Msa0591310:intron | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | + | chr4_2:15593991-15594010 | Msa0591310:intron | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | - | chr4_2:15594255-15594274 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | + | chr4_2:15594255-15594274 | Msa0591310:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | + | chr4_2:15594355-15594374 | Msa0591310:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | + | chr4_2:15594778-15594797 | Msa0591310:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | - | chr4_2:15594856-15594875 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | + | chr4_2:15594885-15594904 | Msa0591310:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | + | chr4_2:15594939-15594958 | Msa0591310:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | + | chr4_2:15594966-15594985 | Msa0591310:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | - | chr4_2:15595069-15595088 | None:intergenic | 30.0% | |
| TTCGGAAAACTCATTTATTC+TGG | + | chr4_2:15595113-15595132 | Msa0591310:CDS | 30.0% | |
| AAAACTCATTTATTCTGGTG+TGG | + | chr4_2:15595118-15595137 | Msa0591310:CDS | 30.0% | |
| GATATACCAAGAAAGATGTA+CGG | + | chr4_2:15593687-15593706 | Msa0591310:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | + | chr4_2:15593725-15593744 | Msa0591310:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | + | chr4_2:15593726-15593745 | Msa0591310:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | + | chr4_2:15593883-15593902 | Msa0591310:intron | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | + | chr4_2:15593884-15593903 | Msa0591310:intron | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | + | chr4_2:15593991-15594010 | Msa0591310:intron | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | - | chr4_2:15594255-15594274 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | + | chr4_2:15594255-15594274 | Msa0591310:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | + | chr4_2:15594355-15594374 | Msa0591310:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | + | chr4_2:15594778-15594797 | Msa0591310:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | - | chr4_2:15594856-15594875 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | + | chr4_2:15594885-15594904 | Msa0591310:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | + | chr4_2:15594939-15594958 | Msa0591310:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | + | chr4_2:15594966-15594985 | Msa0591310:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | - | chr4_2:15595069-15595088 | None:intergenic | 30.0% | |
| TTCGGAAAACTCATTTATTC+TGG | + | chr4_2:15595113-15595132 | Msa0591310:CDS | 30.0% | |
| AAAACTCATTTATTCTGGTG+TGG | + | chr4_2:15595118-15595137 | Msa0591310:CDS | 30.0% | |
| TTCATATTAACCGCTACTCT+AGG | + | chr4_2:15593578-15593597 | Msa0591310:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | + | chr4_2:15593665-15593684 | Msa0591310:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | - | chr4_2:15593675-15593694 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | - | chr4_2:15593696-15593715 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | + | chr4_2:15593727-15593746 | Msa0591310:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | + | chr4_2:15593811-15593830 | Msa0591310:intron | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | - | chr4_2:15593864-15593883 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | - | chr4_2:15593865-15593884 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | - | chr4_2:15593985-15594004 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | - | chr4_2:15593989-15594008 | None:intergenic | 35.0% | |
| AATGAATCCCGGTATGATAA+CGG | + | chr4_2:15594122-15594141 | Msa0591310:intron | 35.0% | |
| AAATGAACCCGTTATCATAC+CGG | - | chr4_2:15594133-15594152 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | - | chr4_2:15594157-15594176 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | + | chr4_2:15594222-15594241 | Msa0591310:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | + | chr4_2:15594327-15594346 | Msa0591310:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | - | chr4_2:15594363-15594382 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | + | chr4_2:15594364-15594383 | Msa0591310:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | - | chr4_2:15594383-15594402 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | + | chr4_2:15594604-15594623 | Msa0591310:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | - | chr4_2:15594712-15594731 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | - | chr4_2:15594776-15594795 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | + | chr4_2:15594777-15594796 | Msa0591310:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | - | chr4_2:15594820-15594839 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | + | chr4_2:15594846-15594865 | Msa0591310:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | - | chr4_2:15594952-15594971 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | + | chr4_2:15595005-15595024 | Msa0591310:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | - | chr4_2:15595070-15595089 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | + | chr4_2:15595068-15595087 | Msa0591310:CDS | 35.0% | |
| TTCATATTAACCGCTACTCT+AGG | + | chr4_2:15593578-15593597 | Msa0591310:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | + | chr4_2:15593665-15593684 | Msa0591310:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | - | chr4_2:15593675-15593694 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | - | chr4_2:15593696-15593715 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | + | chr4_2:15593727-15593746 | Msa0591310:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | + | chr4_2:15593811-15593830 | Msa0591310:intron | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | - | chr4_2:15593864-15593883 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | - | chr4_2:15593865-15593884 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | - | chr4_2:15593985-15594004 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | - | chr4_2:15593989-15594008 | None:intergenic | 35.0% | |
| AATGAATCCCGGTATGATAA+CGG | + | chr4_2:15594122-15594141 | Msa0591310:intron | 35.0% | |
| AAATGAACCCGTTATCATAC+CGG | - | chr4_2:15594133-15594152 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | - | chr4_2:15594157-15594176 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | + | chr4_2:15594222-15594241 | Msa0591310:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | + | chr4_2:15594327-15594346 | Msa0591310:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | - | chr4_2:15594363-15594382 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | + | chr4_2:15594364-15594383 | Msa0591310:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | - | chr4_2:15594383-15594402 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | + | chr4_2:15594604-15594623 | Msa0591310:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | - | chr4_2:15594712-15594731 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | - | chr4_2:15594776-15594795 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | + | chr4_2:15594777-15594796 | Msa0591310:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | - | chr4_2:15594820-15594839 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | + | chr4_2:15594846-15594865 | Msa0591310:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | - | chr4_2:15594952-15594971 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | + | chr4_2:15595005-15595024 | Msa0591310:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | - | chr4_2:15595070-15595089 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | + | chr4_2:15595068-15595087 | Msa0591310:CDS | 35.0% | |
| ATATTAACCGCTACTCTAGG+AGG | + | chr4_2:15593581-15593600 | Msa0591310:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | - | chr4_2:15593591-15593610 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | + | chr4_2:15593697-15593716 | Msa0591310:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | + | chr4_2:15593752-15593771 | Msa0591310:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | + | chr4_2:15593762-15593781 | Msa0591310:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | + | chr4_2:15593770-15593789 | Msa0591310:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | + | chr4_2:15593844-15593863 | Msa0591310:intron | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | - | chr4_2:15593863-15593882 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | + | chr4_2:15593877-15593896 | Msa0591310:intron | 40.0% | |
| AATTAAGGTGAAGCAGAGTC+AGG | + | chr4_2:15594096-15594115 | Msa0591310:intron | 40.0% | |
| ATGAATCCCGGTATGATAAC+GGG | + | chr4_2:15594123-15594142 | Msa0591310:intron | 40.0% | |
| AATGAACCCGTTATCATACC+GGG | - | chr4_2:15594132-15594151 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | - | chr4_2:15594286-15594305 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | - | chr4_2:15594304-15594323 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | - | chr4_2:15594305-15594324 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | + | chr4_2:15594416-15594435 | Msa0591310:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | + | chr4_2:15594435-15594454 | Msa0591310:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | + | chr4_2:15594441-15594460 | Msa0591310:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | - | chr4_2:15594445-15594464 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | - | chr4_2:15594660-15594679 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | - | chr4_2:15594821-15594840 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | + | chr4_2:15594837-15594856 | Msa0591310:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | + | chr4_2:15594888-15594907 | Msa0591310:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | + | chr4_2:15594978-15594997 | Msa0591310:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | - | chr4_2:15595047-15595066 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | + | chr4_2:15595065-15595084 | Msa0591310:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | - | chr4_2:15595101-15595120 | None:intergenic | 40.0% | |
| CTCATTTATTCTGGTGTGGA+TGG | + | chr4_2:15595122-15595141 | Msa0591310:CDS | 40.0% | |
| ATATTAACCGCTACTCTAGG+AGG | + | chr4_2:15593581-15593600 | Msa0591310:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | - | chr4_2:15593591-15593610 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | + | chr4_2:15593697-15593716 | Msa0591310:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | + | chr4_2:15593752-15593771 | Msa0591310:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | + | chr4_2:15593762-15593781 | Msa0591310:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | + | chr4_2:15593770-15593789 | Msa0591310:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | + | chr4_2:15593844-15593863 | Msa0591310:intron | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | - | chr4_2:15593863-15593882 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | + | chr4_2:15593877-15593896 | Msa0591310:intron | 40.0% | |
| AATTAAGGTGAAGCAGAGTC+AGG | + | chr4_2:15594096-15594115 | Msa0591310:intron | 40.0% | |
| ATGAATCCCGGTATGATAAC+GGG | + | chr4_2:15594123-15594142 | Msa0591310:intron | 40.0% | |
| AATGAACCCGTTATCATACC+GGG | - | chr4_2:15594132-15594151 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | - | chr4_2:15594286-15594305 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | - | chr4_2:15594304-15594323 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | - | chr4_2:15594305-15594324 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | + | chr4_2:15594416-15594435 | Msa0591310:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | + | chr4_2:15594435-15594454 | Msa0591310:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | + | chr4_2:15594441-15594460 | Msa0591310:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | - | chr4_2:15594445-15594464 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | - | chr4_2:15594660-15594679 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | - | chr4_2:15594821-15594840 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | + | chr4_2:15594837-15594856 | Msa0591310:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | + | chr4_2:15594888-15594907 | Msa0591310:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | + | chr4_2:15594978-15594997 | Msa0591310:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | - | chr4_2:15595047-15595066 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | + | chr4_2:15595065-15595084 | Msa0591310:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | - | chr4_2:15595101-15595120 | None:intergenic | 40.0% | |
| CTCATTTATTCTGGTGTGGA+TGG | + | chr4_2:15595122-15595141 | Msa0591310:CDS | 40.0% | |
| TCTTGGCTATATGGTTCGTC+CGG | + | chr4_2:15593779-15593798 | Msa0591310:intron | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | - | chr4_2:15593926-15593945 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | - | chr4_2:15593927-15593946 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | - | chr4_2:15593928-15593947 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | + | chr4_2:15593937-15593956 | Msa0591310:intron | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | + | chr4_2:15593944-15593963 | Msa0591310:intron | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | + | chr4_2:15594042-15594061 | Msa0591310:intron | 45.0% | |
| AGTTATGTCTTGGTCCGAGT+GGG | - | chr4_2:15594059-15594078 | None:intergenic | 45.0% | |
| AAGTTATGTCTTGGTCCGAG+TGG | - | chr4_2:15594060-15594079 | None:intergenic | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | + | chr4_2:15594111-15594130 | Msa0591310:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | + | chr4_2:15594274-15594293 | Msa0591310:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | - | chr4_2:15594429-15594448 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | + | chr4_2:15594494-15594513 | Msa0591310:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | + | chr4_2:15594498-15594517 | Msa0591310:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | - | chr4_2:15594577-15594596 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | + | chr4_2:15594579-15594598 | Msa0591310:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | - | chr4_2:15594654-15594673 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | + | chr4_2:15595095-15595114 | Msa0591310:CDS | 45.0% |
| GCAAGCAGGCCTATATTTCT+TGG | + | chr4_2:15595144-15595163 | Msa0591310:CDS | 45.0% | |
| TCTTGGCTATATGGTTCGTC+CGG | + | chr4_2:15593779-15593798 | Msa0591310:intron | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | - | chr4_2:15593926-15593945 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | - | chr4_2:15593927-15593946 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | - | chr4_2:15593928-15593947 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | + | chr4_2:15593937-15593956 | Msa0591310:intron | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | + | chr4_2:15593944-15593963 | Msa0591310:intron | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | + | chr4_2:15594042-15594061 | Msa0591310:intron | 45.0% | |
| AGTTATGTCTTGGTCCGAGT+GGG | - | chr4_2:15594059-15594078 | None:intergenic | 45.0% | |
| AAGTTATGTCTTGGTCCGAG+TGG | - | chr4_2:15594060-15594079 | None:intergenic | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | + | chr4_2:15594111-15594130 | Msa0591310:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | + | chr4_2:15594274-15594293 | Msa0591310:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | - | chr4_2:15594429-15594448 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | + | chr4_2:15594494-15594513 | Msa0591310:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | + | chr4_2:15594498-15594517 | Msa0591310:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | - | chr4_2:15594577-15594596 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | + | chr4_2:15594579-15594598 | Msa0591310:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | - | chr4_2:15594654-15594673 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | + | chr4_2:15595095-15595114 | Msa0591310:CDS | 45.0% |
| GCAAGCAGGCCTATATTTCT+TGG | + | chr4_2:15595144-15595163 | Msa0591310:CDS | 45.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | + | chr4_2:15593745-15593764 | Msa0591310:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | + | chr4_2:15593780-15593799 | Msa0591310:intron | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | + | chr4_2:15593781-15593800 | Msa0591310:intron | 50.0% | |
| CTTGAAGCTCTATCTCTCCC+CGG | - | chr4_2:15593801-15593820 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | - | chr4_2:15593920-15593939 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | - | chr4_2:15593921-15593940 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | - | chr4_2:15593946-15593965 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | - | chr4_2:15594375-15594394 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | - | chr4_2:15594633-15594652 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | - | chr4_2:15595084-15595103 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | - | chr4_2:15595098-15595117 | None:intergenic | 50.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | + | chr4_2:15593745-15593764 | Msa0591310:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | + | chr4_2:15593780-15593799 | Msa0591310:intron | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | + | chr4_2:15593781-15593800 | Msa0591310:intron | 50.0% | |
| CTTGAAGCTCTATCTCTCCC+CGG | - | chr4_2:15593801-15593820 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | - | chr4_2:15593920-15593939 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | - | chr4_2:15593921-15593940 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | - | chr4_2:15593946-15593965 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | - | chr4_2:15594375-15594394 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | - | chr4_2:15594633-15594652 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | - | chr4_2:15595084-15595103 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | - | chr4_2:15595098-15595117 | None:intergenic | 50.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | + | chr4_2:15593917-15593936 | Msa0591310:CDS | 55.0% | |
| TTCTGGTGTGGATGGCAAGC+AGG | + | chr4_2:15595130-15595149 | Msa0591310:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | + | chr4_2:15593917-15593936 | Msa0591310:CDS | 55.0% | |
| TTCTGGTGTGGATGGCAAGC+AGG | + | chr4_2:15595130-15595149 | Msa0591310:CDS | 55.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | + | chr4_2:15595086-15595105 | Msa0591310:CDS | 60.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | + | chr4_2:15595086-15595105 | Msa0591310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 15593554 | 15595175 | 15593554 | ID=Msa0591310;Name=Msa0591310 |
| chr4_2 | mRNA | 15593554 | 15595175 | 15593554 | ID=Msa0591310-mRNA-1;Parent=Msa0591310;Name=Msa0591310-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.66|1|1|3|0|282 |
| chr4_2 | exon | 15593554 | 15593791 | 15593554 | ID=Msa0591310-mRNA-1:exon:4499;Parent=Msa0591310-mRNA-1 |
| chr4_2 | exon | 15593899 | 15593948 | 15593899 | ID=Msa0591310-mRNA-1:exon:4500;Parent=Msa0591310-mRNA-1 |
| chr4_2 | exon | 15594615 | 15595175 | 15594615 | ID=Msa0591310-mRNA-1:exon:4501;Parent=Msa0591310-mRNA-1 |
| chr4_2 | CDS | 15593554 | 15593791 | 15593554 | ID=Msa0591310-mRNA-1:cds;Parent=Msa0591310-mRNA-1 |
| chr4_2 | CDS | 15593899 | 15593948 | 15593899 | ID=Msa0591310-mRNA-1:cds;Parent=Msa0591310-mRNA-1 |
| chr4_2 | CDS | 15594615 | 15595175 | 15594615 | ID=Msa0591310-mRNA-1:cds;Parent=Msa0591310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
