AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354420 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354420 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354420 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354420 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354420 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354420 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354420 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1354420 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1354420 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1354420 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354420 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354420 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354420 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354420 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354420 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1354420 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0014543:-267593 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0014543:+269777 Msa1354420:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0014543:+268826 Msa1354420:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0014543:+269851 Msa1354420:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0014543:+268472 Msa1354420:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0014543:-268814 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0014543:+269878 Msa1354420:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0014543:+267656 Msa1354420:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0014543:+269917 Msa1354420:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0014543:-269403 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0014543:+268843 Msa1354420:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0014543:-269889 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0014543:-269703 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0014543:-269430 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0014543:-269696 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0014543:-267592 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0014543:+269747 Msa1354420:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0014543:-269907 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0014543:-268811 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0014543:-268852 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0014543:-268810 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0014543:+268809 Msa1354420:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0014543:-267632 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0014543:-267611 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0014543:-269786 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0014543:-267620 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0014543:-268464 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0014543:-269402 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0014543:+269403 Msa1354420:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0014543:+269649 Msa1354420:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0014543:+267560 Msa1354420:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0014543:-267640 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0014543:+268808 Msa1354420:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0014543:+269897 Msa1354420:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0014543:+269581 Msa1354420:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0014543:+269840 Msa1354420:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0014543:+269935 Msa1354420:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0014543:-269787 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0014543:-267648 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0014543:-270280 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0014543:+269330 Msa1354420:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0014543:-270449 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0014543:+270433 Msa1354420:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0014543:+269892 Msa1354420:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0014543:+267561 Msa1354420:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0014543:+269891 Msa1354420:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0014543:+269377 Msa1354420:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0014543:+268480 Msa1354420:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0014543:+269331 Msa1354420:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0014543:+269941 Msa1354420:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0014543:+269416 Msa1354420:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0014543:-267633 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0014543:-269858 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0014543:-267590 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0014543:+269395 Msa1354420:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0014543:-268454 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0014543:+268810 Msa1354420:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0014543:-267591 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0014543:-267617 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0014543:-268431 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0014543:+269353 Msa1354420:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0014543:+270416 Msa1354420:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0014543:+269603 Msa1354420:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0014543:+269332 Msa1354420:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0014543:-267589 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0014543:-267631 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0014543:-269371 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0014543:+269707 Msa1354420:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0014543:+269789 Msa1354420:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0014543:-268428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0014543:267843-267862 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0014543:267852-267871 Msa1354420:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0014543:268218-268237 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0014543:268219-268238 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0014543:268222-268241 Msa1354420:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0014543:267853-267872 Msa1354420:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0014543:268658-268677 Msa1354420:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0014543:269486-269505 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0014543:269487-269506 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0014543:269488-269507 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0014543:270162-270181 Msa1354420:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0014543:267595-267614 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0014543:267596-267615 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0014543:267905-267924 Msa1354420:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0014543:268055-268074 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0014543:268055-268074 Msa1354420:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0014543:268400-268419 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0014543:269016-269035 Msa1354420:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0014543:269061-269080 Msa1354420:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0014543:269484-269503 Msa1354420:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0014543:270059-270078 Msa1354420:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0014543:270153-270172 Msa1354420:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0014543:270173-270192 Msa1354420:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0014543:267594-267613 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0014543:267784-267803 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0014543:267785-267804 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0014543:267786-267805 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0014543:267895-267914 Msa1354420:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0014543:267911-267930 Msa1354420:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0014543:267960-267979 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0014543:268006-268025 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0014543:268054-268073 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0014543:268072-268091 Msa1354420:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0014543:268177-268196 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0014543:268178-268197 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0014543:268298-268317 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0014543:268299-268318 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0014543:268300-268319 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0014543:268401-268420 Msa1354420:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0014543:268406-268425 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0014543:268543-268562 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0014543:268766-268785 Msa1354420:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0014543:268842-268861 Msa1354420:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0014543:268843-268862 Msa1354420:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0014543:268910-268929 Msa1354420:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0014543:268920-268939 Msa1354420:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0014543:268983-269002 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0014543:269062-269081 Msa1354420:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0014543:269116-269135 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0014543:269316-269335 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0014543:269467-269486 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0014543:269573-269592 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0014543:269581-269600 Msa1354420:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0014543:269611-269630 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0014543:270045-270064 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0014543:270332-270351 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0014543:270416-270435 Msa1354420:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0014543:267592-267611 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0014543:267593-267612 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0014543:267676-267695 Msa1354420:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0014543:267677-267696 Msa1354420:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0014543:267955-267974 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0014543:267955-267974 Msa1354420:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0014543:268005-268024 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0014543:268007-268026 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0014543:268172-268191 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0014543:268212-268231 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0014543:268266-268285 Msa1354420:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0014543:268343-268362 Msa1354420:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0014543:268899-268918 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0014543:268900-268919 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0014543:268898-268917 Msa1354420:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0014543:268915-268934 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0014543:268913-268932 Msa1354420:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0014543:268919-268938 Msa1354420:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0014543:269306-269325 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0014543:269330-269349 Msa1354420:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0014543:269432-269451 Msa1354420:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0014543:269559-269578 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0014543:269568-269587 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0014543:269603-269622 Msa1354420:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0014543:269617-269636 Msa1354420:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0014543:269649-269668 Msa1354420:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0014543:269739-269758 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0014543:269878-269897 Msa1354420:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0014543:270017-270036 Msa1354420:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0014543:270027-270046 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0014543:270033-270052 Msa1354420:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0014543:270107-270126 Msa1354420:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0014543:270283-270302 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0014543:270282-270301 Msa1354420:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0014543:270299-270318 Msa1354420:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0014543:270321-270340 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0014543:270373-270392 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0014543:270373-270392 Msa1354420:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0014543:267587-267606 Msa1354420:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0014543:267656-267675 Msa1354420:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0014543:267683-267702 Msa1354420:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0014543:267684-267703 Msa1354420:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0014543:267802-267821 Msa1354420:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0014543:267879-267898 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0014543:268211-268230 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0014543:268330-268349 Msa1354420:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0014543:268336-268355 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0014543:268434-268453 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0014543:268697-268716 Msa1354420:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0014543:268725-268744 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0014543:268897-268916 Msa1354420:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0014543:269118-269137 Msa1354420:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0014543:269146-269165 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0014543:269148-269167 Msa1354420:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0014543:269216-269235 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0014543:269226-269245 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0014543:269227-269246 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0014543:269284-269303 Msa1354420:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0014543:269305-269324 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0014543:269329-269348 Msa1354420:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0014543:269331-269350 Msa1354420:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0014543:269433-269452 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0014543:269431-269450 Msa1354420:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0014543:269433-269452 Msa1354420:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0014543:269706-269725 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0014543:269706-269725 Msa1354420:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0014543:269738-269757 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0014543:269790-269809 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0014543:269935-269954 Msa1354420:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0014543:269982-270001 Msa1354420:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0014543:270318-270337 Msa1354420:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0014543:267778-267797 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0014543:267814-267833 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0014543:268085-268104 Msa1354420:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0014543:268116-268135 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0014543:268131-268150 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0014543:268136-268155 Msa1354420:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0014543:268143-268162 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0014543:268210-268229 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0014543:268329-268348 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0014543:268383-268402 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0014543:268387-268406 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0014543:268508-268527 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0014543:268507-268526 Msa1354420:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0014543:268855-268874 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0014543:268876-268895 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0014543:269066-269085 Msa1354420:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0014543:269225-269244 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0014543:269236-269255 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0014543:269246-269265 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0014543:269276-269295 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0014543:269290-269309 Msa1354420:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0014543:269332-269351 Msa1354420:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0014543:269374-269393 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0014543:269377-269396 Msa1354420:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0014543:269705-269724 Msa1354420:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0014543:269707-269726 Msa1354420:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0014543:269747-269766 Msa1354420:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0014543:269777-269796 Msa1354420:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0014543:269789-269808 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0014543:269789-269808 Msa1354420:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0014543:269819-269838 Msa1354420:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0014543:269851-269870 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0014543:269851-269870 Msa1354420:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0014543:269861-269880 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0014543:269892-269911 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0014543:269892-269911 Msa1354420:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0014543:269928-269947 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0014543:269997-270016 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0014543:270126-270145 Msa1354420:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0014543:270127-270146 Msa1354420:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0014543:267560-267579 Msa1354420:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0014543:267614-267633 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0014543:267634-267653 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0014543:267635-267654 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0014543:267643-267662 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0014543:267651-267670 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0014543:267944-267963 Msa1354420:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0014543:268117-268136 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0014543:268209-268228 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0014543:268421-268440 Msa1354420:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0014543:268425-268444 Msa1354420:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0014543:268431-268450 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0014543:268479-268498 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0014543:268480-268499 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0014543:268481-268500 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0014543:268480-268499 Msa1354420:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0014543:268826-268845 Msa1354420:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0014543:268930-268949 Msa1354420:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0014543:269071-269090 Msa1354420:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0014543:269088-269107 Msa1354420:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0014543:269161-269180 Msa1354420:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0014543:269336-269355 Msa1354420:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0014543:269337-269356 Msa1354420:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0014543:269353-269372 Msa1354420:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0014543:269405-269424 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0014543:269511-269530 Msa1354420:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0014543:269699-269718 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0014543:269811-269830 Msa1354420:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0014543:269826-269845 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0014543:269850-269869 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0014543:269891-269910 Msa1354420:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0014543:269941-269960 Msa1354420:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0014543:270128-270147 Msa1354420:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0014543:270452-270471 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0014543:267561-267580 Msa1354420:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0014543:267582-267601 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0014543:267620-267639 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0014543:267623-267642 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0014543:267636-267655 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0014543:267723-267742 Msa1354420:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0014543:267759-267778 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0014543:268208-268227 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0014543:268858-268877 Msa1354420:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0014543:269130-269149 Msa1354420:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0014543:269169-269188 Msa1354420:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0014543:269261-269280 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0014543:269343-269362 Msa1354420:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0014543:269406-269425 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0014543:269403-269422 Msa1354420:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0014543:269416-269435 Msa1354420:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0014543:269515-269534 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0014543:269805-269824 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0014543:269910-269929 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0014543:269917-269936 Msa1354420:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0014543:267735-267754 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0014543:267738-267757 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0014543:267773-267792 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0014543:267774-267793 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0014543:268206-268225 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0014543:268207-268226 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0014543:268808-268827 Msa1354420:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0014543:268809-268828 Msa1354420:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0014543:268817-268836 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0014543:269257-269276 Msa1354420:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0014543:269395-269414 Msa1354420:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0014543:269516-269535 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0014543:269516-269535 Msa1354420:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0014543:269897-269916 Msa1354420:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0014543:270433-270452 Msa1354420:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0014543:267772-267791 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0014543:268457-268476 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0014543:268474-268493 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0014543:268472-268491 Msa1354420:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0014543:268813-268832 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0014543:268810-268829 Msa1354420:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0014543:268814-268833 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0014543:268467-268486 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0014543:269840-269859 Msa1354420:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 267546 270473 267546 ID=Msa1354420;Name=Msa1354420
tig0014543 mRNA 267546 270473 267546 ID=Msa1354420-mRNA-1;Parent=Msa1354420;Name=Msa1354420-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0014543 exon 267546 267698 267546 ID=Msa1354420-mRNA-1:exon:9114;Parent=Msa1354420-mRNA-1
tig0014543 exon 268421 268510 268421 ID=Msa1354420-mRNA-1:exon:9115;Parent=Msa1354420-mRNA-1
tig0014543 exon 268771 268864 268771 ID=Msa1354420-mRNA-1:exon:9116;Parent=Msa1354420-mRNA-1
tig0014543 exon 269345 269437 269345 ID=Msa1354420-mRNA-1:exon:9117;Parent=Msa1354420-mRNA-1
tig0014543 exon 269592 269828 269592 ID=Msa1354420-mRNA-1:exon:9118;Parent=Msa1354420-mRNA-1
tig0014543 exon 269841 269987 269841 ID=Msa1354420-mRNA-1:exon:9119;Parent=Msa1354420-mRNA-1
tig0014543 exon 270280 270473 270280 ID=Msa1354420-mRNA-1:exon:9120;Parent=Msa1354420-mRNA-1
tig0014543 CDS 267546 267698 267546 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 268421 268510 268421 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 268771 268864 268771 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 269345 269437 269345 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 269592 269828 269592 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 269841 269987 269841 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
tig0014543 CDS 270280 270473 270280 ID=Msa1354420-mRNA-1:cds;Parent=Msa1354420-mRNA-1
Gene Sequence

>Msa1354420

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1354420

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI