AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867680 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0867680 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0867680 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa0867680 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0867680 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0867680 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa0867680 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa0867680 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa0867680 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa0867680 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867680 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa0867680 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa0867680 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa0867680 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa0867680 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa0867680 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 6_1:-761077 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 6_1:+763264 Msa0867680:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 6_1:+762310 Msa0867680:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 6_1:+763338 Msa0867680:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 6_1:+761956 Msa0867680:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 6_1:-762298 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 6_1:+763365 Msa0867680:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 6_1:+761140 Msa0867680:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 6_1:+763404 Msa0867680:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 6_1:-762890 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 6_1:+762327 Msa0867680:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 6_1:-763376 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 6_1:-763190 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 6_1:-762917 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 6_1:-763183 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 6_1:-761076 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 6_1:+763234 Msa0867680:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 6_1:-763394 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 6_1:-762295 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 6_1:-762336 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 6_1:-762294 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 6_1:+762293 Msa0867680:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 6_1:-761116 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 6_1:-761095 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 6_1:-763273 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 6_1:-761104 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 6_1:-761948 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 6_1:-762889 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 6_1:+762890 Msa0867680:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 6_1:+763136 Msa0867680:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 6_1:+761044 Msa0867680:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 6_1:-761124 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 6_1:+762292 Msa0867680:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 6_1:+763384 Msa0867680:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 6_1:+763068 Msa0867680:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 6_1:+763327 Msa0867680:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 6_1:+763422 Msa0867680:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 6_1:-763274 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 6_1:-761132 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 6_1:-763767 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 6_1:+762817 Msa0867680:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 6_1:-763936 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 6_1:+763920 Msa0867680:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 6_1:+763379 Msa0867680:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 6_1:+761045 Msa0867680:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 6_1:+763378 Msa0867680:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 6_1:+762864 Msa0867680:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 6_1:+761964 Msa0867680:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 6_1:+762818 Msa0867680:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 6_1:+763428 Msa0867680:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 6_1:+762903 Msa0867680:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 6_1:-761117 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 6_1:-763345 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 6_1:-761074 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 6_1:+762882 Msa0867680:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 6_1:-761938 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 6_1:+762294 Msa0867680:CDS
AGGACCATATAATATTTATG+GGG 0.632114 6_1:-761075 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 6_1:-761101 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 6_1:-761915 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 6_1:+762840 Msa0867680:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 6_1:+763903 Msa0867680:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 6_1:+763090 Msa0867680:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 6_1:+762819 Msa0867680:intron
GACCATATAATATTTATGGG+GGG 0.666516 6_1:-761073 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 6_1:-761115 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 6_1:-762858 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 6_1:+763194 Msa0867680:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 6_1:+763276 Msa0867680:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 6_1:-761912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - chr6_1:761327-761346 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + chr6_1:761336-761355 Msa0867680:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - chr6_1:761702-761721 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - chr6_1:761703-761722 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + chr6_1:761706-761725 Msa0867680:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + chr6_1:761337-761356 Msa0867680:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + chr6_1:762142-762161 Msa0867680:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - chr6_1:762973-762992 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - chr6_1:762974-762993 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - chr6_1:762975-762994 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + chr6_1:763649-763668 Msa0867680:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - chr6_1:761079-761098 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - chr6_1:761080-761099 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + chr6_1:761389-761408 Msa0867680:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - chr6_1:761539-761558 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + chr6_1:761539-761558 Msa0867680:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - chr6_1:761884-761903 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr6_1:762503-762522 Msa0867680:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + chr6_1:762548-762567 Msa0867680:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + chr6_1:762971-762990 Msa0867680:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + chr6_1:763546-763565 Msa0867680:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + chr6_1:763640-763659 Msa0867680:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + chr6_1:763660-763679 Msa0867680:intron 20.0%
! AGGACCATATAATATTTATG+GGG - chr6_1:761078-761097 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - chr6_1:761268-761287 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - chr6_1:761269-761288 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - chr6_1:761270-761289 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + chr6_1:761379-761398 Msa0867680:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + chr6_1:761395-761414 Msa0867680:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - chr6_1:761444-761463 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - chr6_1:761490-761509 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - chr6_1:761538-761557 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + chr6_1:761556-761575 Msa0867680:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - chr6_1:761661-761680 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - chr6_1:761662-761681 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - chr6_1:761782-761801 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - chr6_1:761783-761802 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - chr6_1:761784-761803 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + chr6_1:761885-761904 Msa0867680:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - chr6_1:761890-761909 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - chr6_1:762027-762046 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr6_1:762250-762269 Msa0867680:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr6_1:762326-762345 Msa0867680:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr6_1:762327-762346 Msa0867680:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr6_1:762394-762413 Msa0867680:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr6_1:762404-762423 Msa0867680:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr6_1:762467-762486 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + chr6_1:762549-762568 Msa0867680:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr6_1:762603-762622 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr6_1:762803-762822 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - chr6_1:762954-762973 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - chr6_1:763060-763079 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + chr6_1:763068-763087 Msa0867680:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - chr6_1:763098-763117 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - chr6_1:763532-763551 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - chr6_1:763819-763838 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + chr6_1:763903-763922 Msa0867680:CDS 25.0%
GACCATATAATATTTATGGG+GGG - chr6_1:761076-761095 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - chr6_1:761077-761096 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + chr6_1:761160-761179 Msa0867680:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + chr6_1:761161-761180 Msa0867680:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - chr6_1:761439-761458 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + chr6_1:761439-761458 Msa0867680:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - chr6_1:761489-761508 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - chr6_1:761491-761510 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - chr6_1:761656-761675 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - chr6_1:761696-761715 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + chr6_1:761750-761769 Msa0867680:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + chr6_1:761827-761846 Msa0867680:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr6_1:762383-762402 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr6_1:762384-762403 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr6_1:762382-762401 Msa0867680:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr6_1:762399-762418 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr6_1:762397-762416 Msa0867680:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr6_1:762403-762422 Msa0867680:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr6_1:762793-762812 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr6_1:762817-762836 Msa0867680:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr6_1:762919-762938 Msa0867680:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - chr6_1:763046-763065 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - chr6_1:763055-763074 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + chr6_1:763090-763109 Msa0867680:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + chr6_1:763104-763123 Msa0867680:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + chr6_1:763136-763155 Msa0867680:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - chr6_1:763226-763245 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + chr6_1:763365-763384 Msa0867680:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + chr6_1:763504-763523 Msa0867680:intron 30.0%
TATGGATCCATACATAACAT+AGG - chr6_1:763514-763533 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + chr6_1:763520-763539 Msa0867680:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + chr6_1:763594-763613 Msa0867680:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - chr6_1:763770-763789 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + chr6_1:763769-763788 Msa0867680:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + chr6_1:763786-763805 Msa0867680:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - chr6_1:763808-763827 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - chr6_1:763860-763879 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + chr6_1:763860-763879 Msa0867680:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + chr6_1:761071-761090 Msa0867680:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + chr6_1:761140-761159 Msa0867680:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + chr6_1:761167-761186 Msa0867680:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + chr6_1:761168-761187 Msa0867680:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + chr6_1:761286-761305 Msa0867680:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - chr6_1:761363-761382 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - chr6_1:761695-761714 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + chr6_1:761814-761833 Msa0867680:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - chr6_1:761820-761839 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - chr6_1:761918-761937 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr6_1:762181-762200 Msa0867680:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr6_1:762209-762228 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr6_1:762381-762400 Msa0867680:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr6_1:762605-762624 Msa0867680:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr6_1:762633-762652 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr6_1:762635-762654 Msa0867680:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr6_1:762703-762722 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr6_1:762713-762732 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr6_1:762714-762733 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr6_1:762771-762790 Msa0867680:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - chr6_1:762792-762811 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr6_1:762816-762835 Msa0867680:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr6_1:762818-762837 Msa0867680:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr6_1:762920-762939 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr6_1:762918-762937 Msa0867680:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr6_1:762920-762939 Msa0867680:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - chr6_1:763193-763212 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + chr6_1:763193-763212 Msa0867680:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - chr6_1:763225-763244 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - chr6_1:763277-763296 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + chr6_1:763422-763441 Msa0867680:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + chr6_1:763469-763488 Msa0867680:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + chr6_1:763805-763824 Msa0867680:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - chr6_1:761262-761281 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - chr6_1:761298-761317 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + chr6_1:761569-761588 Msa0867680:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - chr6_1:761600-761619 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - chr6_1:761615-761634 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + chr6_1:761620-761639 Msa0867680:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - chr6_1:761627-761646 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - chr6_1:761694-761713 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - chr6_1:761813-761832 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - chr6_1:761867-761886 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - chr6_1:761871-761890 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - chr6_1:761992-762011 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + chr6_1:761991-762010 Msa0867680:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr6_1:762339-762358 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr6_1:762360-762379 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + chr6_1:762553-762572 Msa0867680:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr6_1:762712-762731 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr6_1:762723-762742 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr6_1:762733-762752 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr6_1:762763-762782 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr6_1:762777-762796 Msa0867680:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr6_1:762819-762838 Msa0867680:intron 40.0%
ACAATGTGATATCTCACACC+AGG - chr6_1:762861-762880 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr6_1:762864-762883 Msa0867680:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + chr6_1:763192-763211 Msa0867680:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + chr6_1:763194-763213 Msa0867680:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + chr6_1:763234-763253 Msa0867680:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + chr6_1:763264-763283 Msa0867680:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - chr6_1:763276-763295 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + chr6_1:763276-763295 Msa0867680:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + chr6_1:763306-763325 Msa0867680:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - chr6_1:763338-763357 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + chr6_1:763338-763357 Msa0867680:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - chr6_1:763348-763367 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - chr6_1:763379-763398 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + chr6_1:763379-763398 Msa0867680:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - chr6_1:763415-763434 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - chr6_1:763484-763503 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + chr6_1:763613-763632 Msa0867680:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + chr6_1:763614-763633 Msa0867680:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + chr6_1:761044-761063 Msa0867680:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - chr6_1:761098-761117 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - chr6_1:761118-761137 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - chr6_1:761119-761138 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - chr6_1:761127-761146 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - chr6_1:761135-761154 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + chr6_1:761428-761447 Msa0867680:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - chr6_1:761601-761620 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - chr6_1:761693-761712 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + chr6_1:761905-761924 Msa0867680:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + chr6_1:761909-761928 Msa0867680:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - chr6_1:761915-761934 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - chr6_1:761963-761982 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - chr6_1:761964-761983 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - chr6_1:761965-761984 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + chr6_1:761964-761983 Msa0867680:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + chr6_1:762310-762329 Msa0867680:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr6_1:762414-762433 Msa0867680:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + chr6_1:762558-762577 Msa0867680:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr6_1:762575-762594 Msa0867680:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr6_1:762648-762667 Msa0867680:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr6_1:762823-762842 Msa0867680:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr6_1:762824-762843 Msa0867680:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr6_1:762840-762859 Msa0867680:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr6_1:762892-762911 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + chr6_1:762998-763017 Msa0867680:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - chr6_1:763186-763205 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + chr6_1:763298-763317 Msa0867680:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - chr6_1:763313-763332 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - chr6_1:763337-763356 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + chr6_1:763378-763397 Msa0867680:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + chr6_1:763428-763447 Msa0867680:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + chr6_1:763615-763634 Msa0867680:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - chr6_1:763939-763958 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + chr6_1:761045-761064 Msa0867680:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - chr6_1:761066-761085 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - chr6_1:761104-761123 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - chr6_1:761107-761126 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - chr6_1:761120-761139 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + chr6_1:761207-761226 Msa0867680:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - chr6_1:761243-761262 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - chr6_1:761692-761711 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr6_1:762342-762361 Msa0867680:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr6_1:762617-762636 Msa0867680:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr6_1:762656-762675 Msa0867680:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr6_1:762748-762767 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr6_1:762830-762849 Msa0867680:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr6_1:762893-762912 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr6_1:762890-762909 Msa0867680:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr6_1:762903-762922 Msa0867680:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - chr6_1:763002-763021 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - chr6_1:763292-763311 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - chr6_1:763397-763416 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + chr6_1:763404-763423 Msa0867680:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - chr6_1:761219-761238 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - chr6_1:761222-761241 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - chr6_1:761257-761276 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - chr6_1:761258-761277 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - chr6_1:761690-761709 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - chr6_1:761691-761710 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr6_1:762292-762311 Msa0867680:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr6_1:762293-762312 Msa0867680:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - chr6_1:762301-762320 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr6_1:762744-762763 Msa0867680:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr6_1:762882-762901 Msa0867680:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - chr6_1:763003-763022 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + chr6_1:763003-763022 Msa0867680:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + chr6_1:763384-763403 Msa0867680:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + chr6_1:763920-763939 Msa0867680:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - chr6_1:761256-761275 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - chr6_1:761941-761960 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - chr6_1:761958-761977 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + chr6_1:761956-761975 Msa0867680:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - chr6_1:762297-762316 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + chr6_1:762294-762313 Msa0867680:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - chr6_1:762298-762317 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - chr6_1:761951-761970 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + chr6_1:763327-763346 Msa0867680:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 761030 763960 761030 ID=Msa0867680;Name=Msa0867680
chr6_1 mRNA 761030 763960 761030 ID=Msa0867680-mRNA-1;Parent=Msa0867680;Name=Msa0867680-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
chr6_1 exon 761030 761182 761030 ID=Msa0867680-mRNA-1:exon:216;Parent=Msa0867680-mRNA-1
chr6_1 exon 761905 761994 761905 ID=Msa0867680-mRNA-1:exon:217;Parent=Msa0867680-mRNA-1
chr6_1 exon 762255 762348 762255 ID=Msa0867680-mRNA-1:exon:218;Parent=Msa0867680-mRNA-1
chr6_1 exon 762832 762924 762832 ID=Msa0867680-mRNA-1:exon:219;Parent=Msa0867680-mRNA-1
chr6_1 exon 763079 763315 763079 ID=Msa0867680-mRNA-1:exon:220;Parent=Msa0867680-mRNA-1
chr6_1 exon 763328 763474 763328 ID=Msa0867680-mRNA-1:exon:221;Parent=Msa0867680-mRNA-1
chr6_1 exon 763767 763960 763767 ID=Msa0867680-mRNA-1:exon:222;Parent=Msa0867680-mRNA-1
chr6_1 CDS 761030 761182 761030 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 761905 761994 761905 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 762255 762348 762255 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 762832 762924 762832 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 763079 763315 763079 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 763328 763474 763328 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
chr6_1 CDS 763767 763960 763767 ID=Msa0867680-mRNA-1:cds;Parent=Msa0867680-mRNA-1
Gene Sequence

>Msa0867680

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa0867680

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI