AlfalfaGEDB | Msa0908540

M. sativa cultivar zhongmu-4 / Msa0908540

KEGG: K02992|K05573
GO: -
PFAM: PF00361.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908540	BBN70062.1	96.717	396	11	1	1	394	86	481	0.0	769

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908540	sp\|P0CC61\|NU2C2_EUCGG	94.416	394	15	1	1	394	124	510	0.0	743

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0095150	Msa0908540	0.839294	1.726931e-57	-8.615850e-47
Msa0095190	Msa0908540	0.823007	1.745991e-53	-8.615850e-47
Msa0139800	Msa0908540	0.803733	3.028205e-49	-8.615850e-47
Msa0202640	Msa0908540	0.819136	1.360884e-52	-8.615850e-47
Msa0263770	Msa0908540	0.832198	1.084177e-55	-8.615850e-47
Msa0268210	Msa0908540	0.806047	9.942697e-50	-8.615850e-47
Msa0268250	Msa0908540	0.899878	1.281323e-77	-8.615850e-47
Msa0268260	Msa0908540	0.840857	6.752330e-58	-8.615850e-47
Msa0268270	Msa0908540	0.839873	1.221440e-57	-8.615850e-47
Msa0268300	Msa0908540	0.855504	6.036578e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908540	MtrunA17_CPg0492451	99.020	204	2	0	191	394	1	204	1.20e-144	409
Msa0908540	MtrunA17_Chr4g0016071	99.020	204	2	0	191	394	1	204	1.20e-144	409
Msa0908540	MtrunA17_Chr3g0090871	91.667	204	2	1	191	394	1	189	6.59e-127	363
Msa0908540	MtrunA17_Chr1g0195541	99.242	132	1	0	1	132	1	132	2.52e-88	264
Msa0908540	MtrunA17_CPg0492431	99.242	132	1	0	1	132	106	237	8.52e-87	265
Msa0908540	MtrunA17_Chr3g0090851	99.242	132	1	0	1	132	106	237	8.52e-87	265
Msa0908540	MtrunA17_Chr4g0016091	99.242	132	1	0	1	132	106	237	8.52e-87	265
Msa0908540	MtrunA17_Chr1g0153231	97.297	74	2	0	58	131	1	74	7.16e-44	147
Msa0908540	MtrunA17_Chr0c03g0489881	33.028	218	135	4	129	346	2	208	4.83e-27	107
Msa0908540	MtrunA17_MTg0491931	33.028	218	135	4	129	346	2	208	4.83e-27	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908540	ATCG00890.1	93.655	394	18	1	1	394	1	387	0.0	666
Msa0908540	ATCG01250.1	93.655	394	18	1	1	394	1	387	0.0	666
Msa0908540	AT2G07689.1	35.859	198	116	4	129	326	2	188	7.76e-27	107
Msa0908540	ATCG01010.1	26.490	302	199	8	9	301	130	417	4.55e-16	80.5

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Find 85 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCCTCCTAGAGTAG+CGG	0.663526	6_2:-9720173	None:intergenic
AAACTTCATTTATTCTGGTG+TGG	0.518432	6_2:+9721706	Msa0908540:CDS
AAGCGCAATTGAAATTCCAG+GGG	0.720091	6_2:-9720446	None:intergenic
ACACAAATGTATAACTCCCC+TGG	0.530663	6_2:+9720430	Msa0908540:CDS
ACAGAAAGAAAAGCAACGAC+TGG	0.577795	6_2:-9721244	None:intergenic
ACTATGAAATATTTACTCAT+GGG	0.584827	6_2:+9720307	Msa0908540:CDS
AGAAAAGCAACGACTGGAGT+CGG	0.551106	6_2:-9721238	None:intergenic
AGCAAAAGTTCCTAGATTCA+TGG	0.448640	6_2:-9721536	None:intergenic
AGCTCTTCTATTCTGGTTCA+TGG	0.287942	6_2:+9720337	Msa0908540:CDS
AGGAATATCGAAAATTCGAG+TGG	0.650147	6_2:-9721296	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATATACCAAGAAAGATGTA+CGG	+	chr6_2:9720272-9720291	Msa0908540:CDS	30.0%
ATGAAATATTTACTCATGGG+TGG	+	chr6_2:9720310-9720329	Msa0908540:CDS	30.0%
TGAAATATTTACTCATGGGT+GGG	+	chr6_2:9720311-9720330	Msa0908540:CDS	30.0%
ATATTCATCACTGTAGGAAT+TGG	+	chr6_2:9720469-9720488	Msa0908540:CDS	30.0%
TATTCATCACTGTAGGAATT+GGG	+	chr6_2:9720470-9720489	Msa0908540:CDS	30.0%
ATTATATTCGTAGTCTCTGA+AGG	-	chr6_2:9720842-9720861	None:intergenic	30.0%
TCAGAGACTACGAATATAAT+AGG	+	chr6_2:9720842-9720861	Msa0908540:intron	30.0%
CTATTCTTAGCATGCTATTA+GGG	+	chr6_2:9721365-9721384	Msa0908540:CDS	30.0%
TACATATCCAATTTGACCTA+TGG	-	chr6_2:9721443-9721462	None:intergenic	30.0%
ATAATTGTTGGAGACTCAAA+TGG	+	chr6_2:9721472-9721491	Msa0908540:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	9720139	9721990	9720139	ID=Msa0908540;Name=Msa0908540
chr6_2	mRNA	9720139	9721990	9720139	ID=Msa0908540-mRNA-1;Parent=Msa0908540;Name=Msa0908540-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|394
chr6_2	exon	9720139	9720534	9720139	ID=Msa0908540-mRNA-1:exon:2375;Parent=Msa0908540-mRNA-1
chr6_2	exon	9721202	9721990	9721202	ID=Msa0908540-mRNA-1:exon:2376;Parent=Msa0908540-mRNA-1
chr6_2	CDS	9720139	9720534	9720139	ID=Msa0908540-mRNA-1:cds;Parent=Msa0908540-mRNA-1
chr6_2	CDS	9721202	9721990	9721202	ID=Msa0908540-mRNA-1:cds;Parent=Msa0908540-mRNA-1

Gene Sequence

>Msa0908540

ATGGCTATAACAGAGTTTCTGTTATTCATATTAACCGCTACTCTAGGAGGAATGTTTTTATGCAGCGCTAATGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTATCTACTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCGTCCGGGGGAGAGATAGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCTGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACAAAGAAGTGAGGAATCCTCTTTTCGACTCTGACTCTCCGACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTCAGCCACTCGAATTTTCGATATTCCTTTTTATTTCTCATCAAACGAATGGCATCTTCTTCTAGAAATCCTAGCTATTCTTAGCATGCTATTAGGGAATCTTATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCTTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGTTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACTGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTATTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTTCATTTATTCTGGTGTGGATGGCAAGCAGGCCTATATTTCTTGGTTTCAATAGGACTTATTACAAGCGTTGTTTCTATCTACTATTATCTAAAAATAATTAAGTTATTAATGACTGGACGAAACCAAGAAATAACTCCTCACGTGCGAAATTATAGAAGGTCTCCTGTAAGATCAAACAATTCCATCGAATTGAGTATGATTATATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCCATTATTGAAATTGCTCAGGATACCCTTTTTTAG

Protein sequence

>Msa0908540

MAITEFLLFILTATLGGMFLCSANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDKEVRNPLFDSDSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMLLGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLITSVVSIYYYLKIIKLLMTGRNQEITPHVRNYRRSPVRSNNSIELSMIICVIASTIPGISMNPIIEIAQDTLF*