AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354980 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354980 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354980 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354980 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354980 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354980 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354980 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1354980 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1354980 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1354980 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354980 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354980 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354980 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354980 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354980 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1354980 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0014543:-662311 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0014543:+664498 Msa1354980:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0014543:+663544 Msa1354980:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0014543:+664572 Msa1354980:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0014543:+663190 Msa1354980:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0014543:-663532 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0014543:+664599 Msa1354980:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0014543:+662374 Msa1354980:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0014543:+664638 Msa1354980:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0014543:-664124 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0014543:+663561 Msa1354980:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0014543:-664610 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0014543:-664424 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0014543:-664151 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0014543:-664417 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0014543:-662310 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0014543:+664468 Msa1354980:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0014543:-664628 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0014543:-663529 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0014543:-663570 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0014543:-663528 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0014543:+663527 Msa1354980:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0014543:-662350 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0014543:-662329 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0014543:-664507 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0014543:-662338 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0014543:-663182 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0014543:-664123 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0014543:+664124 Msa1354980:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0014543:+664370 Msa1354980:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0014543:+662278 Msa1354980:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0014543:-662358 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0014543:+663526 Msa1354980:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0014543:+664618 Msa1354980:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0014543:+664302 Msa1354980:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0014543:+664561 Msa1354980:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0014543:+664656 Msa1354980:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0014543:-664508 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0014543:-662366 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0014543:-665001 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0014543:+664051 Msa1354980:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0014543:-665170 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0014543:+665154 Msa1354980:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0014543:+664613 Msa1354980:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0014543:+662279 Msa1354980:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0014543:+664612 Msa1354980:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0014543:+664098 Msa1354980:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0014543:+663198 Msa1354980:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0014543:+664052 Msa1354980:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0014543:+664662 Msa1354980:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0014543:+664137 Msa1354980:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0014543:-662351 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0014543:-664579 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0014543:-662308 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0014543:+664116 Msa1354980:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0014543:-663172 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0014543:+663528 Msa1354980:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0014543:-662309 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0014543:-662335 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0014543:-663149 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0014543:+664074 Msa1354980:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0014543:+665137 Msa1354980:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0014543:+664324 Msa1354980:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0014543:+664053 Msa1354980:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0014543:-662307 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0014543:-662349 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0014543:-664092 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0014543:+664428 Msa1354980:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0014543:+664510 Msa1354980:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0014543:-663146 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0014543:662561-662580 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0014543:662570-662589 Msa1354980:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0014543:662936-662955 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0014543:662937-662956 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0014543:662940-662959 Msa1354980:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0014543:662571-662590 Msa1354980:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0014543:663376-663395 Msa1354980:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0014543:664207-664226 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0014543:664208-664227 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0014543:664209-664228 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0014543:664883-664902 Msa1354980:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0014543:662313-662332 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0014543:662314-662333 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0014543:662623-662642 Msa1354980:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0014543:662773-662792 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0014543:662773-662792 Msa1354980:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0014543:663118-663137 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0014543:663737-663756 Msa1354980:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0014543:663782-663801 Msa1354980:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0014543:664205-664224 Msa1354980:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0014543:664780-664799 Msa1354980:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0014543:664874-664893 Msa1354980:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0014543:664894-664913 Msa1354980:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0014543:662312-662331 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0014543:662502-662521 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0014543:662503-662522 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0014543:662504-662523 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0014543:662613-662632 Msa1354980:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0014543:662629-662648 Msa1354980:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0014543:662678-662697 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0014543:662724-662743 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0014543:662772-662791 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0014543:662790-662809 Msa1354980:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0014543:662895-662914 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0014543:662896-662915 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0014543:663016-663035 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0014543:663017-663036 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0014543:663018-663037 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0014543:663119-663138 Msa1354980:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0014543:663124-663143 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0014543:663261-663280 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0014543:663484-663503 Msa1354980:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0014543:663560-663579 Msa1354980:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0014543:663561-663580 Msa1354980:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0014543:663628-663647 Msa1354980:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0014543:663638-663657 Msa1354980:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0014543:663701-663720 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0014543:663783-663802 Msa1354980:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0014543:663837-663856 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0014543:664037-664056 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0014543:664188-664207 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0014543:664294-664313 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0014543:664302-664321 Msa1354980:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0014543:664332-664351 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0014543:664766-664785 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0014543:665053-665072 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0014543:665137-665156 Msa1354980:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0014543:662310-662329 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0014543:662311-662330 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0014543:662394-662413 Msa1354980:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0014543:662395-662414 Msa1354980:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0014543:662673-662692 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0014543:662673-662692 Msa1354980:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0014543:662723-662742 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0014543:662725-662744 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0014543:662890-662909 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0014543:662930-662949 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0014543:662984-663003 Msa1354980:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0014543:663061-663080 Msa1354980:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0014543:663617-663636 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0014543:663618-663637 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0014543:663616-663635 Msa1354980:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0014543:663633-663652 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0014543:663631-663650 Msa1354980:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0014543:663637-663656 Msa1354980:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0014543:664027-664046 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0014543:664051-664070 Msa1354980:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0014543:664153-664172 Msa1354980:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0014543:664280-664299 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0014543:664289-664308 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0014543:664324-664343 Msa1354980:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0014543:664338-664357 Msa1354980:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0014543:664370-664389 Msa1354980:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0014543:664460-664479 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0014543:664599-664618 Msa1354980:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0014543:664738-664757 Msa1354980:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0014543:664748-664767 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0014543:664754-664773 Msa1354980:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0014543:664828-664847 Msa1354980:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0014543:665004-665023 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0014543:665003-665022 Msa1354980:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0014543:665020-665039 Msa1354980:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0014543:665042-665061 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0014543:665094-665113 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0014543:665094-665113 Msa1354980:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0014543:662305-662324 Msa1354980:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0014543:662374-662393 Msa1354980:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0014543:662401-662420 Msa1354980:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0014543:662402-662421 Msa1354980:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0014543:662520-662539 Msa1354980:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0014543:662597-662616 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0014543:662929-662948 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0014543:663048-663067 Msa1354980:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0014543:663054-663073 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0014543:663152-663171 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0014543:663415-663434 Msa1354980:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0014543:663443-663462 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0014543:663615-663634 Msa1354980:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0014543:663839-663858 Msa1354980:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0014543:663867-663886 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0014543:663869-663888 Msa1354980:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0014543:663937-663956 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0014543:663947-663966 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0014543:663948-663967 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0014543:664005-664024 Msa1354980:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0014543:664026-664045 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0014543:664050-664069 Msa1354980:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0014543:664052-664071 Msa1354980:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0014543:664154-664173 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0014543:664152-664171 Msa1354980:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0014543:664154-664173 Msa1354980:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0014543:664427-664446 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0014543:664427-664446 Msa1354980:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0014543:664459-664478 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0014543:664511-664530 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0014543:664656-664675 Msa1354980:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0014543:664703-664722 Msa1354980:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0014543:665039-665058 Msa1354980:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0014543:662496-662515 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0014543:662532-662551 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0014543:662803-662822 Msa1354980:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0014543:662834-662853 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0014543:662849-662868 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0014543:662854-662873 Msa1354980:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0014543:662861-662880 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0014543:662928-662947 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0014543:663047-663066 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0014543:663101-663120 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0014543:663105-663124 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0014543:663226-663245 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0014543:663225-663244 Msa1354980:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0014543:663573-663592 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0014543:663594-663613 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0014543:663787-663806 Msa1354980:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0014543:663946-663965 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0014543:663957-663976 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0014543:663967-663986 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0014543:663997-664016 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0014543:664011-664030 Msa1354980:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0014543:664053-664072 Msa1354980:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0014543:664095-664114 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0014543:664098-664117 Msa1354980:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0014543:664426-664445 Msa1354980:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0014543:664428-664447 Msa1354980:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0014543:664468-664487 Msa1354980:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0014543:664498-664517 Msa1354980:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0014543:664510-664529 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0014543:664510-664529 Msa1354980:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0014543:664540-664559 Msa1354980:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0014543:664572-664591 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0014543:664572-664591 Msa1354980:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0014543:664582-664601 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0014543:664613-664632 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0014543:664613-664632 Msa1354980:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0014543:664649-664668 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0014543:664718-664737 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0014543:664847-664866 Msa1354980:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0014543:664848-664867 Msa1354980:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0014543:662278-662297 Msa1354980:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0014543:662332-662351 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0014543:662352-662371 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0014543:662353-662372 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0014543:662361-662380 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0014543:662369-662388 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0014543:662662-662681 Msa1354980:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0014543:662835-662854 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0014543:662927-662946 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0014543:663139-663158 Msa1354980:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0014543:663143-663162 Msa1354980:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0014543:663149-663168 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0014543:663197-663216 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0014543:663198-663217 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0014543:663199-663218 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0014543:663198-663217 Msa1354980:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0014543:663544-663563 Msa1354980:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0014543:663648-663667 Msa1354980:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0014543:663792-663811 Msa1354980:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0014543:663809-663828 Msa1354980:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0014543:663882-663901 Msa1354980:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0014543:664057-664076 Msa1354980:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0014543:664058-664077 Msa1354980:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0014543:664074-664093 Msa1354980:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0014543:664126-664145 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0014543:664232-664251 Msa1354980:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0014543:664420-664439 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0014543:664532-664551 Msa1354980:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0014543:664547-664566 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0014543:664571-664590 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0014543:664612-664631 Msa1354980:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0014543:664662-664681 Msa1354980:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0014543:664849-664868 Msa1354980:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0014543:665173-665192 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0014543:662279-662298 Msa1354980:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0014543:662300-662319 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0014543:662338-662357 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0014543:662341-662360 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0014543:662354-662373 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0014543:662441-662460 Msa1354980:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0014543:662477-662496 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0014543:662926-662945 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0014543:663576-663595 Msa1354980:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0014543:663851-663870 Msa1354980:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0014543:663890-663909 Msa1354980:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0014543:663982-664001 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0014543:664064-664083 Msa1354980:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0014543:664127-664146 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0014543:664124-664143 Msa1354980:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0014543:664137-664156 Msa1354980:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0014543:664236-664255 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0014543:664526-664545 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0014543:664631-664650 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0014543:664638-664657 Msa1354980:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0014543:662453-662472 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0014543:662456-662475 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0014543:662491-662510 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0014543:662492-662511 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0014543:662924-662943 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0014543:662925-662944 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0014543:663526-663545 Msa1354980:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0014543:663527-663546 Msa1354980:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0014543:663535-663554 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0014543:663978-663997 Msa1354980:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0014543:664116-664135 Msa1354980:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0014543:664237-664256 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0014543:664237-664256 Msa1354980:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0014543:664618-664637 Msa1354980:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0014543:665154-665173 Msa1354980:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0014543:662490-662509 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0014543:663175-663194 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0014543:663192-663211 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0014543:663190-663209 Msa1354980:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0014543:663531-663550 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0014543:663528-663547 Msa1354980:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0014543:663532-663551 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0014543:663185-663204 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0014543:664561-664580 Msa1354980:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 662264 665194 662264 ID=Msa1354980;Name=Msa1354980
tig0014543 mRNA 662264 665194 662264 ID=Msa1354980-mRNA-1;Parent=Msa1354980;Name=Msa1354980-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0014543 exon 662264 662416 662264 ID=Msa1354980-mRNA-1:exon:9300;Parent=Msa1354980-mRNA-1
tig0014543 exon 663139 663228 663139 ID=Msa1354980-mRNA-1:exon:9301;Parent=Msa1354980-mRNA-1
tig0014543 exon 663489 663582 663489 ID=Msa1354980-mRNA-1:exon:9302;Parent=Msa1354980-mRNA-1
tig0014543 exon 664066 664158 664066 ID=Msa1354980-mRNA-1:exon:9303;Parent=Msa1354980-mRNA-1
tig0014543 exon 664313 664549 664313 ID=Msa1354980-mRNA-1:exon:9304;Parent=Msa1354980-mRNA-1
tig0014543 exon 664562 664708 664562 ID=Msa1354980-mRNA-1:exon:9305;Parent=Msa1354980-mRNA-1
tig0014543 exon 665001 665194 665001 ID=Msa1354980-mRNA-1:exon:9306;Parent=Msa1354980-mRNA-1
tig0014543 CDS 662264 662416 662264 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 663139 663228 663139 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 663489 663582 663489 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 664066 664158 664066 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 664313 664549 664313 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 664562 664708 664562 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
tig0014543 CDS 665001 665194 665001 ID=Msa1354980-mRNA-1:cds;Parent=Msa1354980-mRNA-1
Gene Sequence

>Msa1354980

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1354980

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI