Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354490 | YP_009141653.1 | 100.000 | 131 | 0 | 0 | 1 | 131 | 25 | 155 | 1.21e-90 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354490 | sp|P07135|RR7_SOYBN | 96.947 | 131 | 4 | 0 | 1 | 131 | 25 | 155 | 1.13e-90 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354490 | A0A0F6NLW0 | 100.000 | 131 | 0 | 0 | 1 | 131 | 25 | 155 | 5.78e-91 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095190 | Msa1354490 | 0.825105 | 5.619149e-54 | -8.615850e-47 |
| Msa1354320 | Msa1354490 | 0.800171 | 1.633007e-48 | -8.615850e-47 |
| Msa1354380 | Msa1354490 | 0.800631 | 1.316691e-48 | -8.615850e-47 |
| Msa1354420 | Msa1354490 | 0.902851 | 6.353050e-79 | -8.615850e-47 |
| Msa1354430 | Msa1354490 | 0.841630 | 4.230401e-58 | -8.615850e-47 |
| Msa1354480 | Msa1354490 | 0.874294 | 7.556125e-68 | -8.615850e-47 |
| Msa1354490 | Msa1354500 | 0.863774 | 1.957294e-64 | -8.615850e-47 |
| Msa1354490 | Msa1354550 | 0.906463 | 1.444146e-80 | -8.615850e-47 |
| Msa1354490 | Msa1354560 | 0.855089 | 7.968454e-62 | -8.615850e-47 |
| Msa1354490 | Msa1354610 | 0.880670 | 4.534094e-70 | -8.615850e-47 |
| Msa1354490 | Msa1354620 | 0.927450 | 1.154945e-91 | -8.615850e-47 |
| Msa1354490 | Msa1354630 | 0.882899 | 7.072154e-71 | -8.615850e-47 |
| Msa1354490 | Msa1354680 | 0.855766 | 5.062105e-62 | -8.615850e-47 |
| Msa1354490 | Msa1354690 | 0.916966 | 9.419452e-86 | -8.615850e-47 |
| Msa1354490 | Msa1354700 | 0.852205 | 5.379072e-61 | -8.615850e-47 |
| Msa1354490 | Msa1354740 | 0.873974 | 9.699413e-68 | -8.615850e-47 |
| Msa1354490 | Msa1354750 | 0.921355 | 3.979114e-88 | -8.615850e-47 |
| Msa1354490 | Msa1354760 | 0.863504 | 2.374534e-64 | -8.615850e-47 |
| Msa1354490 | Msa1354810 | 0.908502 | 1.593240e-81 | -8.615850e-47 |
| Msa1354490 | Msa1354820 | 0.847486 | 1.121996e-59 | -8.615850e-47 |
| Msa1354490 | Msa1354910 | 0.824674 | 7.101103e-54 | -8.615850e-47 |
| Msa1354490 | Msa1354920 | 0.819820 | 9.503632e-53 | -8.615850e-47 |
| Msa1354490 | Msa1354930 | 0.812687 | 3.739832e-51 | -8.615850e-47 |
| Msa1354490 | Msa1354980 | 0.900902 | 4.601499e-78 | -8.615850e-47 |
| Msa1354490 | Msa1354990 | 0.844119 | 9.206453e-59 | -8.615850e-47 |
| Msa1354490 | Msa1355080 | 0.818426 | 1.972716e-52 | -8.615850e-47 |
| Msa1354490 | Msa1355090 | 0.818619 | 1.783350e-52 | -8.615850e-47 |
| Msa1354490 | Msa1365890 | 0.876219 | 1.661001e-68 | -8.615850e-47 |
| Msa1354490 | Msa1365900 | 0.834601 | 2.727285e-56 | -8.615850e-47 |
| Msa1354490 | Msa1365950 | 0.851687 | 7.545022e-61 | -8.615850e-47 |
| Msa1354490 | Msa1365960 | 0.908565 | 1.487123e-81 | -8.615850e-47 |
| Msa1354490 | Msa1365970 | 0.856249 | 3.655223e-62 | -8.615850e-47 |
| Msa1354490 | Msa1366080 | 0.871152 | 8.495769e-67 | -8.615850e-47 |
| Msa1354490 | Msa1366090 | 0.825594 | 4.305507e-54 | -8.615850e-47 |
| Msa1354490 | Msa1368230 | 0.889966 | 1.508382e-73 | -8.615850e-47 |
| Msa1354490 | Msa1368240 | 0.858909 | 5.959426e-63 | -8.615850e-47 |
| Msa1354490 | Msa1380600 | 0.817464 | 3.253456e-52 | -8.615850e-47 |
| Msa1354490 | Msa1380620 | 0.806711 | 7.203401e-50 | -8.615850e-47 |
| Msa1354490 | Msa1385410 | 0.882698 | 8.373558e-71 | -8.615850e-47 |
| Msa1354490 | Msa1385420 | 0.841988 | 3.402143e-58 | -8.615850e-47 |
| Msa1354490 | Msa1391090 | 0.850540 | 1.589417e-60 | -8.615850e-47 |
| Msa1354490 | Msa1391100 | 0.934467 | 3.861362e-96 | -8.615850e-47 |
| Msa1354490 | Msa1391110 | 0.858145 | 1.007315e-62 | -8.615850e-47 |
| Msa1354490 | Msa1391160 | 0.888511 | 5.535221e-73 | -8.615850e-47 |
| Msa1354490 | Msa1391170 | 0.845137 | 4.898231e-59 | -8.615850e-47 |
| Msa1354490 | Msa1391220 | 0.873729 | 1.173620e-67 | -8.615850e-47 |
| Msa1354490 | Msa1391230 | 0.905237 | 5.304795e-80 | -8.615850e-47 |
| Msa1354490 | Msa1391240 | 0.861677 | 8.672060e-64 | -8.615850e-47 |
| Msa1354490 | Msa1394030 | 0.826767 | 2.264440e-54 | -8.615850e-47 |
| Msa1354490 | Msa1394040 | 0.834958 | 2.218405e-56 | -8.615850e-47 |
| Msa1354490 | Msa1394150 | 0.828744 | 7.583557e-55 | -8.615850e-47 |
| Msa1354490 | Msa1394160 | 0.823403 | 1.411327e-53 | -8.615850e-47 |
| Msa1354490 | Msa1394210 | 0.834540 | 2.825058e-56 | -8.615850e-47 |
| Msa1354490 | Msa1394220 | 0.814634 | 1.394356e-51 | -8.615850e-47 |
| Msa1354490 | Msa1394230 | 0.804758 | 1.852042e-49 | -8.615850e-47 |
| Msa1354490 | Msa1460120 | 0.850023 | 2.220351e-60 | -8.615850e-47 |
| Msa1354490 | Msa1460130 | 0.847894 | 8.659978e-60 | -8.615850e-47 |
| Msa0202640 | Msa1354490 | 0.833257 | 5.916693e-56 | -8.615850e-47 |
| Msa1305090 | Msa1354490 | 0.829879 | 4.021643e-55 | -8.615850e-47 |
| Msa0370210 | Msa1354490 | 0.817585 | 3.055034e-52 | -8.615850e-47 |
| Msa0405420 | Msa1354490 | 0.819256 | 1.278105e-52 | -8.615850e-47 |
| Msa0405430 | Msa1354490 | 0.876212 | 1.670742e-68 | -8.615850e-47 |
| Msa0405440 | Msa1354490 | 0.847312 | 1.252516e-59 | -8.615850e-47 |
| Msa0405510 | Msa1354490 | 0.843548 | 1.309269e-58 | -8.615850e-47 |
| Msa0405520 | Msa1354490 | 0.860443 | 2.057796e-63 | -8.615850e-47 |
| Msa0405530 | Msa1354490 | 0.858253 | 9.351258e-63 | -8.615850e-47 |
| Msa0983630 | Msa1354490 | 0.904978 | 6.970129e-80 | -8.615850e-47 |
| Msa0983640 | Msa1354490 | 0.848058 | 7.807271e-60 | -8.615850e-47 |
| Msa1022050 | Msa1354490 | 0.882309 | 1.160847e-70 | -8.615850e-47 |
| Msa1022060 | Msa1354490 | 0.835344 | 1.772834e-56 | -8.615850e-47 |
| Msa1064410 | Msa1354490 | 0.837525 | 4.936818e-57 | -8.615850e-47 |
| Msa1086080 | Msa1354490 | 0.808725 | 2.689492e-50 | -8.615850e-47 |
| Msa1086090 | Msa1354490 | 0.819475 | 1.138837e-52 | -8.615850e-47 |
| Msa1086100 | Msa1354490 | 0.820246 | 7.589157e-53 | -8.615850e-47 |
| Msa1086140 | Msa1354490 | 0.837274 | 5.726172e-57 | -8.615850e-47 |
| Msa1086190 | Msa1354490 | 0.823979 | 1.034590e-53 | -8.615850e-47 |
| Msa1086200 | Msa1354490 | 0.814887 | 1.225677e-51 | -8.615850e-47 |
| Msa1086210 | Msa1354490 | 0.813415 | 2.589771e-51 | -8.615850e-47 |
| Msa1086260 | Msa1354490 | 0.802792 | 4.742531e-49 | -8.615850e-47 |
| Msa1086270 | Msa1354490 | 0.824986 | 5.994883e-54 | -8.615850e-47 |
| Msa1086550 | Msa1354490 | 0.842500 | 2.490434e-58 | -8.615850e-47 |
| Msa1086560 | Msa1354490 | 0.850078 | 2.141804e-60 | -8.615850e-47 |
| Msa1086590 | Msa1354490 | 0.884885 | 1.308499e-71 | -8.615850e-47 |
| Msa1086600 | Msa1354490 | 0.865811 | 4.504849e-65 | -8.615850e-47 |
| Msa1086720 | Msa1354490 | 0.875676 | 2.553087e-68 | -8.615850e-47 |
| Msa1086730 | Msa1354490 | 0.923576 | 2.213428e-89 | -8.615850e-47 |
| Msa1086740 | Msa1354490 | 0.865228 | 6.876695e-65 | -8.615850e-47 |
| Msa1086790 | Msa1354490 | 0.901014 | 4.108139e-78 | -8.615850e-47 |
| Msa1086800 | Msa1354490 | 0.877940 | 4.197860e-69 | -8.615850e-47 |
| Msa1086880 | Msa1354490 | 0.811347 | 7.326519e-51 | -8.615850e-47 |
| Msa1086890 | Msa1354490 | 0.818053 | 2.395685e-52 | -8.615850e-47 |
| Msa1086900 | Msa1354490 | 0.811618 | 6.398445e-51 | -8.615850e-47 |
| Msa1086910 | Msa1354490 | 0.810632 | 1.046648e-50 | -8.615850e-47 |
| Msa1086960 | Msa1354490 | 0.887238 | 1.700676e-72 | -8.615850e-47 |
| Msa1086970 | Msa1354490 | 0.845389 | 4.187674e-59 | -8.615850e-47 |
| Msa1087030 | Msa1354490 | 0.844106 | 9.284441e-59 | -8.615850e-47 |
| Msa1087040 | Msa1354490 | 0.904548 | 1.093624e-79 | -8.615850e-47 |
| Msa1087050 | Msa1354490 | 0.863826 | 1.886940e-64 | -8.615850e-47 |
| Msa1087110 | Msa1354490 | 0.900499 | 6.890857e-78 | -8.615850e-47 |
| Msa1087120 | Msa1354490 | 0.863225 | 2.896735e-64 | -8.615850e-47 |
| Msa0263770 | Msa1354490 | 0.856190 | 3.804684e-62 | -8.615850e-47 |
| Msa0268250 | Msa1354490 | 0.851427 | 8.940398e-61 | -8.615850e-47 |
| Msa0268260 | Msa1354490 | 0.926693 | 3.300692e-91 | -8.615850e-47 |
| Msa0268270 | Msa1354490 | 0.879547 | 1.139691e-69 | -8.615850e-47 |
| Msa0268300 | Msa1354490 | 0.891303 | 4.492926e-74 | -8.615850e-47 |
| Msa0268310 | Msa1354490 | 0.874553 | 6.173197e-68 | -8.615850e-47 |
| Msa0268410 | Msa1354490 | 0.810519 | 1.107112e-50 | -8.615850e-47 |
| Msa0268550 | Msa1354490 | 0.807759 | 4.319520e-50 | -8.615850e-47 |
| Msa0268560 | Msa1354490 | 0.829257 | 5.697047e-55 | -8.615850e-47 |
| Msa0268570 | Msa1354490 | 0.800915 | 1.151916e-48 | -8.615850e-47 |
| Msa0268580 | Msa1354490 | 0.835571 | 1.552582e-56 | -8.615850e-47 |
| Msa0268630 | Msa1354490 | 0.820895 | 5.385072e-53 | -8.615850e-47 |
| Msa0268640 | Msa1354490 | 0.811181 | 7.959429e-51 | -8.615850e-47 |
| Msa0268740 | Msa1354490 | 0.819195 | 1.319630e-52 | -8.615850e-47 |
| Msa0268750 | Msa1354490 | 0.812469 | 4.173904e-51 | -8.615850e-47 |
| Msa0268760 | Msa1354490 | 0.831418 | 1.688171e-55 | -8.615850e-47 |
| Msa0268830 | Msa1354490 | 0.836615 | 8.436100e-57 | -8.615850e-47 |
| Msa0268840 | Msa1354490 | 0.800455 | 1.429944e-48 | -8.615850e-47 |
| Msa0268950 | Msa1354490 | 0.807882 | 4.068950e-50 | -8.615850e-47 |
| Msa0268960 | Msa1354490 | 0.840880 | 6.660642e-58 | -8.615850e-47 |
| Msa0269040 | Msa1354490 | 0.846684 | 1.860824e-59 | -8.615850e-47 |
| Msa0269050 | Msa1354490 | 0.813651 | 2.297406e-51 | -8.615850e-47 |
| Msa0269130 | Msa1354490 | 0.854228 | 1.415054e-61 | -8.615850e-47 |
| Msa0269140 | Msa1354490 | 0.936257 | 2.316635e-97 | -8.615850e-47 |
| Msa0269150 | Msa1354490 | 0.881226 | 2.862772e-70 | -8.615850e-47 |
| Msa0344180 | Msa1354490 | 0.836595 | 8.536764e-57 | -8.615850e-47 |
| Msa0344190 | Msa1354490 | 0.820474 | 6.730490e-53 | -8.615850e-47 |
| Msa0344310 | Msa1354490 | 0.831218 | 1.891191e-55 | -8.615850e-47 |
| Msa1143120 | Msa1354490 | 0.832351 | 9.933929e-56 | -8.615850e-47 |
| Msa1143160 | Msa1354490 | 0.821116 | 4.791698e-53 | -8.615850e-47 |
| Msa1143170 | Msa1354490 | 0.801453 | 8.939869e-49 | -8.615850e-47 |
| Msa1143180 | Msa1354490 | 0.804404 | 2.196110e-49 | -8.615850e-47 |
| Msa0582510 | Msa1354490 | 0.839743 | 1.319821e-57 | -8.615850e-47 |
| Msa0582630 | Msa1354490 | 0.804821 | 1.796725e-49 | -8.615850e-47 |
| Msa0582640 | Msa1354490 | 0.844321 | 8.125819e-59 | -8.615850e-47 |
| Msa0582650 | Msa1354490 | 0.803934 | 2.750167e-49 | -8.615850e-47 |
| Msa0582660 | Msa1354490 | 0.821240 | 4.485296e-53 | -8.615850e-47 |
| Msa0582690 | Msa1354490 | 0.837644 | 4.602662e-57 | -8.615850e-47 |
| Msa0582700 | Msa1354490 | 0.804100 | 2.540551e-49 | -8.615850e-47 |
| Msa0582750 | Msa1354490 | 0.807227 | 5.604042e-50 | -8.615850e-47 |
| Msa0582760 | Msa1354490 | 0.831987 | 1.222488e-55 | -8.615850e-47 |
| Msa0582770 | Msa1354490 | 0.801239 | 9.887440e-49 | -8.615850e-47 |
| Msa0582780 | Msa1354490 | 0.823955 | 1.048292e-53 | -8.615850e-47 |
| Msa0582810 | Msa1354490 | 0.838543 | 2.702358e-57 | -8.615850e-47 |
| Msa0582820 | Msa1354490 | 0.805606 | 1.230749e-49 | -8.615850e-47 |
| Msa0582910 | Msa1354490 | 0.823393 | 1.419377e-53 | -8.615850e-47 |
| Msa0582920 | Msa1354490 | 0.811965 | 5.376157e-51 | -8.615850e-47 |
| Msa0582930 | Msa1354490 | 0.828622 | 8.114185e-55 | -8.615850e-47 |
| Msa0591290 | Msa1354490 | 0.846851 | 1.674615e-59 | -8.615850e-47 |
| Msa0591310 | Msa1354490 | 0.863133 | 3.093049e-64 | -8.615850e-47 |
| Msa0591350 | Msa1354490 | 0.877349 | 6.749687e-69 | -8.615850e-47 |
| Msa0591360 | Msa1354490 | 0.843584 | 1.280773e-58 | -8.615850e-47 |
| Msa0591380 | Msa1354490 | 0.824852 | 6.447179e-54 | -8.615850e-47 |
| Msa0867680 | Msa1354490 | 0.895953 | 5.868511e-76 | -8.615850e-47 |
| Msa0867690 | Msa1354490 | 0.837300 | 5.638104e-57 | -8.615850e-47 |
| Msa0876520 | Msa1354490 | 0.820525 | 6.551626e-53 | -8.615850e-47 |
| Msa0908220 | Msa1354490 | 0.867706 | 1.122691e-65 | -8.615850e-47 |
| Msa0908230 | Msa1354490 | 0.932169 | 1.274123e-94 | -8.615850e-47 |
| Msa0908240 | Msa1354490 | 0.864864 | 8.942450e-65 | -8.615850e-47 |
| Msa0908310 | Msa1354490 | 0.919257 | 5.642347e-87 | -8.615850e-47 |
| Msa0908320 | Msa1354490 | 0.851506 | 8.492836e-61 | -8.615850e-47 |
| Msa0908370 | Msa1354490 | 0.893302 | 7.136292e-75 | -8.615850e-47 |
| Msa0908380 | Msa1354490 | 0.822851 | 1.898284e-53 | -8.615850e-47 |
| Msa0908430 | Msa1354490 | 0.841469 | 4.662489e-58 | -8.615850e-47 |
| Msa0908440 | Msa1354490 | 0.927285 | 1.454397e-91 | -8.615850e-47 |
| Msa0908450 | Msa1354490 | 0.877389 | 6.536428e-69 | -8.615850e-47 |
| Msa0908480 | Msa1354490 | 0.822002 | 2.989740e-53 | -8.615850e-47 |
| Msa0908530 | Msa1354490 | 0.908067 | 2.561272e-81 | -8.615850e-47 |
| Msa0908540 | Msa1354490 | 0.861211 | 1.202887e-63 | -8.615850e-47 |
| Msa0908590 | Msa1354490 | 0.841042 | 6.039477e-58 | -8.615850e-47 |
| Msa0908600 | Msa1354490 | 0.903398 | 3.616417e-79 | -8.615850e-47 |
| Msa0908610 | Msa1354490 | 0.824035 | 1.003533e-53 | -8.615850e-47 |
| Msa0908650 | Msa1354490 | 0.848697 | 5.195582e-60 | -8.615850e-47 |
| Msa0908660 | Msa1354490 | 0.915177 | 8.019077e-85 | -8.615850e-47 |
| Msa0908670 | Msa1354490 | 0.869596 | 2.749761e-66 | -8.615850e-47 |
| Msa0908720 | Msa1354490 | 0.897932 | 8.697183e-77 | -8.615850e-47 |
| Msa0908730 | Msa1354490 | 0.843150 | 1.671904e-58 | -8.615850e-47 |
| Msa0911190 | Msa1354490 | 0.849837 | 2.501629e-60 | -8.615850e-47 |
| Msa0911200 | Msa1354490 | 0.851606 | 7.956935e-61 | -8.615850e-47 |
| Msa0911230 | Msa1354490 | 0.817015 | 4.105075e-52 | -8.615850e-47 |
| Msa0924830 | Msa1354490 | 0.802148 | 6.437598e-49 | -8.615850e-47 |
| Msa0924870 | Msa1354490 | 0.805266 | 1.450726e-49 | -8.615850e-47 |
| Msa0924880 | Msa1354490 | 0.811918 | 5.504296e-51 | -8.615850e-47 |
| Msa0924890 | Msa1354490 | 0.812036 | 5.188710e-51 | -8.615850e-47 |
| Msa0924930 | Msa1354490 | 0.888547 | 5.361013e-73 | -8.615850e-47 |
| Msa0924940 | Msa1354490 | 0.839907 | 1.196436e-57 | -8.615850e-47 |
| Msa0925100 | Msa1354490 | 0.867366 | 1.443499e-65 | -8.615850e-47 |
| Msa0925110 | Msa1354490 | 0.850161 | 2.030062e-60 | -8.615850e-47 |
| Msa0931070 | Msa1354490 | 0.822815 | 1.935791e-53 | -8.615850e-47 |
| Msa0931130 | Msa1354490 | 0.829523 | 4.907151e-55 | -8.615850e-47 |
| Msa0931220 | Msa1354490 | 0.826144 | 3.187040e-54 | -8.615850e-47 |
| Msa0931240 | Msa1354490 | 0.830540 | 2.773341e-55 | -8.615850e-47 |
| Msa0931260 | Msa1354490 | 0.845051 | 5.169047e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354490 | MtrunA17_CPg0492421 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
| Msa1354490 | MtrunA17_Chr4g0016101 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
| Msa1354490 | MtrunA17_Chr3g0090841 | 91.729 | 133 | 9 | 1 | 1 | 131 | 25 | 157 | 1.30e-85 | 246 |
| Msa1354490 | MtrunA17_Chr4g0002541 | 83.333 | 60 | 10 | 0 | 1 | 60 | 1 | 60 | 3.60e-30 | 103 |
| Msa1354490 | MtrunA17_Chr4g0057401 | 87.500 | 40 | 5 | 0 | 92 | 131 | 1 | 40 | 1.06e-17 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354490 | ATCG00900.1 | 95.420 | 131 | 6 | 0 | 1 | 131 | 25 | 155 | 7.02e-91 | 260 |
| Msa1354490 | ATCG01240.1 | 95.420 | 131 | 6 | 0 | 1 | 131 | 25 | 155 | 7.02e-91 | 260 |
| Msa1354490 | ATMG01270.1 | 33.824 | 136 | 80 | 3 | 2 | 131 | 15 | 146 | 3.86e-18 | 75.5 |
| Msa1354490 | AT2G07696.1 | 33.824 | 136 | 80 | 3 | 2 | 131 | 15 | 146 | 3.86e-18 | 75.5 |
Find 25 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCATTCGTTGGTTATT+AGG | 0.268444 | tig0014543:-301744 | Msa1354490:CDS |
| CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | tig0014543:-301786 | Msa1354490:CDS |
| AAAACGTCCAGGTCGAAATA+TGG | 0.317789 | tig0014543:-301712 | Msa1354490:CDS |
| CAAATTAAGTTCCGAATTAG+TGG | 0.342047 | tig0014543:-301685 | Msa1354490:CDS |
| TGGCGATGCCATACGCAAAA+AGG | 0.366109 | tig0014543:-301646 | Msa1354490:CDS |
| TTTGGCAGCATCCACTAATT+CGG | 0.404543 | tig0014543:+301674 | None:intergenic |
| ACGTATTGCTTGACGTAAAA+CGG | 0.405511 | tig0014543:+301860 | None:intergenic |
| GCTTGACGTAAAACGGATAG+TGG | 0.418362 | tig0014543:+301867 | None:intergenic |
| GTAAAAGCAAGACGCGTAAA+CGG | 0.427761 | tig0014543:-301816 | Msa1354490:CDS |
| TATGGCATCGCCATTCCCTT+TGG | 0.436234 | tig0014543:+301656 | None:intergenic |
| TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | tig0014543:+301777 | None:intergenic |
| TTATCTATCGAGCTATGAAA+AGG | 0.512086 | tig0014543:-301914 | Msa1354490:CDS |
| GAAAAGCACTTGCCATTCGT+TGG | 0.526859 | tig0014543:-301752 | Msa1354490:CDS |
| GTGGATGCTGCCAAAGGGAA+TGG | 0.532446 | tig0014543:-301666 | Msa1354490:CDS |
| GGCGCATCCCGAAAACGTCC+AGG | 0.540732 | tig0014543:-301723 | Msa1354490:CDS |
| AAAGGAAGAGACTCATAGAA+TGG | 0.548096 | tig0014543:-301628 | Msa1354490:CDS |
| TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | tig0014543:+301776 | None:intergenic |
| AATTAGTGGATGCTGCCAAA+GGG | 0.575951 | tig0014543:-301671 | Msa1354490:CDS |
| GAATTAGTGGATGCTGCCAA+AGG | 0.584526 | tig0014543:-301672 | Msa1354490:CDS |
| AGAGACTCATAGAATGGCAG+AGG | 0.593635 | tig0014543:-301622 | Msa1354490:CDS |
| TTGAAAGCCATATTTCGACC+TGG | 0.605724 | tig0014543:+301705 | None:intergenic |
| TGCGCCTAATAACCAACGAA+TGG | 0.620213 | tig0014543:+301740 | None:intergenic |
| GTTAACCGTATTATGAAACA+CGG | 0.650772 | tig0014543:-301960 | Msa1354490:CDS |
| TTTACGTCAAGCAATACGTG+GGG | 0.715577 | tig0014543:-301856 | Msa1354490:CDS |
| GTTGAAATAGGATCCACACA+AGG | 0.731975 | tig0014543:-301774 | Msa1354490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTTTCCGTGTTTCATAATA+CGG | + | tig0014543:301607-301626 | None:intergenic | 25.0% |
| GTTAACCGTATTATGAAACA+CGG | - | tig0014543:301599-301618 | Msa1354490:CDS | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | - | tig0014543:301613-301632 | Msa1354490:CDS | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | - | tig0014543:301645-301664 | Msa1354490:CDS | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | + | tig0014543:301735-301754 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | - | tig0014543:301874-301893 | Msa1354490:CDS | 30.0% | |
| ACGTATTGCTTGACGTAAAA+CGG | + | tig0014543:301702-301721 | None:intergenic | 35.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | - | tig0014543:301702-301721 | Msa1354490:CDS | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | + | tig0014543:301734-301753 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | + | tig0014543:301786-301805 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | - | tig0014543:301931-301950 | Msa1354490:CDS | 35.0% | |
| ! | GTTTTACGTCAAGCAATACG+TGG | - | tig0014543:301701-301720 | Msa1354490:CDS | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | - | tig0014543:301703-301722 | Msa1354490:CDS | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | - | tig0014543:301743-301762 | Msa1354490:CDS | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | - | tig0014543:301773-301792 | Msa1354490:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | + | tig0014543:301785-301804 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | - | tig0014543:301785-301804 | Msa1354490:CDS | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | - | tig0014543:301815-301834 | Msa1354490:CDS | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | + | tig0014543:301847-301866 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | - | tig0014543:301847-301866 | Msa1354490:CDS | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | + | tig0014543:301857-301876 | None:intergenic | 40.0% | |
| TTTGGCAGCATCCACTAATT+CGG | + | tig0014543:301888-301907 | None:intergenic | 40.0% | |
| ! | AATTAGTGGATGCTGCCAAA+GGG | - | tig0014543:301888-301907 | Msa1354490:CDS | 40.0% |
| ! | AGTCTCTTCCTTTTTGCGTA+TGG | + | tig0014543:301924-301943 | None:intergenic | 40.0% |
| GCTTGACGTAAAACGGATAG+TGG | + | tig0014543:301695-301714 | None:intergenic | 45.0% | |
| !! | GAAAAGCACTTGCCATTCGT+TGG | - | tig0014543:301807-301826 | Msa1354490:CDS | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | + | tig0014543:301822-301841 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | + | tig0014543:301846-301865 | None:intergenic | 45.0% |
| ! | GAATTAGTGGATGCTGCCAA+AGG | - | tig0014543:301887-301906 | Msa1354490:CDS | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | - | tig0014543:301937-301956 | Msa1354490:CDS | 45.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | + | tig0014543:301801-301820 | None:intergenic | 50.0% |
| TATGGCATCGCCATTCCCTT+TGG | + | tig0014543:301906-301925 | None:intergenic | 50.0% | |
| TGGCGATGCCATACGCAAAA+AGG | - | tig0014543:301913-301932 | Msa1354490:CDS | 50.0% | |
| GTGGATGCTGCCAAAGGGAA+TGG | - | tig0014543:301893-301912 | Msa1354490:CDS | 55.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | - | tig0014543:301836-301855 | Msa1354490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 301593 | 301988 | 301593 | ID=Msa1354490;Name=Msa1354490 |
| tig0014543 | mRNA | 301593 | 301988 | 301593 | ID=Msa1354490-mRNA-1;Parent=Msa1354490;Name=Msa1354490-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|131 |
| tig0014543 | exon | 301593 | 301988 | 301593 | ID=Msa1354490-mRNA-1:exon:9138;Parent=Msa1354490-mRNA-1 |
| tig0014543 | CDS | 301593 | 301988 | 301593 | ID=Msa1354490-mRNA-1:cds;Parent=Msa1354490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
