Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368240 | AES69829.1 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 2.67e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368240 | sp|A4GYN8|RR12B_POPTR | 95.876 | 97 | 4 | 0 | 61 | 157 | 39 | 135 | 3.89e-61 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368240 | G7J101 | 75.145 | 173 | 12 | 2 | 1 | 150 | 1 | 165 | 1.28e-75 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1368240 | 0.803588 | 3.245344e-49 | -8.615850e-47 |
| Msa0095230 | Msa1368240 | 0.815044 | 1.130908e-51 | -8.615850e-47 |
| Msa1354320 | Msa1368240 | 0.800282 | 1.550447e-48 | -8.615850e-47 |
| Msa1354420 | Msa1368240 | 0.895810 | 6.725593e-76 | -8.615850e-47 |
| Msa1354430 | Msa1368240 | 0.826218 | 3.060458e-54 | -8.615850e-47 |
| Msa1354480 | Msa1368240 | 0.851426 | 8.943338e-61 | -8.615850e-47 |
| Msa1354490 | Msa1368240 | 0.858909 | 5.959426e-63 | -8.615850e-47 |
| Msa1354500 | Msa1368240 | 0.935663 | 5.949398e-97 | -8.615850e-47 |
| Msa1354550 | Msa1368240 | 0.899823 | 1.352802e-77 | -8.615850e-47 |
| Msa1354560 | Msa1368240 | 0.821092 | 4.852655e-53 | -8.615850e-47 |
| Msa1354610 | Msa1368240 | 0.859033 | 5.469496e-63 | -8.615850e-47 |
| Msa1354620 | Msa1368240 | 0.854144 | 1.496227e-61 | -8.615850e-47 |
| Msa1354630 | Msa1368240 | 0.941552 | 3.408916e-101 | -8.615850e-47 |
| Msa1354680 | Msa1368240 | 0.921231 | 4.664246e-88 | -8.615850e-47 |
| Msa1354690 | Msa1368240 | 0.867326 | 1.486653e-65 | -8.615850e-47 |
| Msa1354700 | Msa1368240 | 0.824342 | 8.501057e-54 | -8.615850e-47 |
| Msa1354740 | Msa1368240 | 0.850120 | 2.085347e-60 | -8.615850e-47 |
| Msa1354750 | Msa1368240 | 0.851798 | 7.016095e-61 | -8.615850e-47 |
| Msa1354760 | Msa1368240 | 0.944018 | 4.206243e-103 | -8.615850e-47 |
| Msa1354810 | Msa1368240 | 0.893674 | 5.044211e-75 | -8.615850e-47 |
| Msa1354820 | Msa1368240 | 0.851759 | 7.199034e-61 | -8.615850e-47 |
| Msa1354920 | Msa1368240 | 0.834721 | 2.545131e-56 | -8.615850e-47 |
| Msa1354980 | Msa1368240 | 0.891771 | 2.928484e-74 | -8.615850e-47 |
| Msa1354990 | Msa1368240 | 0.849706 | 2.722282e-60 | -8.615850e-47 |
| Msa1355080 | Msa1368240 | 0.814658 | 1.377381e-51 | -8.615850e-47 |
| Msa1355090 | Msa1368240 | 0.844525 | 7.164326e-59 | -8.615850e-47 |
| Msa1365890 | Msa1368240 | 0.877724 | 4.996671e-69 | -8.615850e-47 |
| Msa1365900 | Msa1368240 | 0.827017 | 1.973050e-54 | -8.615850e-47 |
| Msa1365950 | Msa1368240 | 0.843412 | 1.423338e-58 | -8.615850e-47 |
| Msa1365960 | Msa1368240 | 0.811048 | 8.506719e-51 | -8.615850e-47 |
| Msa1365970 | Msa1368240 | 0.933059 | 3.335767e-95 | -8.615850e-47 |
| Msa1366080 | Msa1368240 | 0.863977 | 1.692573e-64 | -8.615850e-47 |
| Msa1366090 | Msa1368240 | 0.829766 | 4.283672e-55 | -8.615850e-47 |
| Msa1368230 | Msa1368240 | 0.860726 | 1.689405e-63 | -8.615850e-47 |
| Msa1368240 | Msa1380610 | 0.814815 | 1.271474e-51 | -8.615850e-47 |
| Msa1368240 | Msa1380620 | 0.801144 | 1.034097e-48 | -8.615850e-47 |
| Msa1368240 | Msa1385410 | 0.854981 | 8.568481e-62 | -8.615850e-47 |
| Msa1368240 | Msa1385420 | 0.802631 | 5.119887e-49 | -8.615850e-47 |
| Msa1368240 | Msa1391090 | 0.819877 | 9.219367e-53 | -8.615850e-47 |
| Msa1368240 | Msa1391100 | 0.852118 | 5.693796e-61 | -8.615850e-47 |
| Msa1368240 | Msa1391110 | 0.941035 | 8.368226e-101 | -8.615850e-47 |
| Msa1368240 | Msa1391160 | 0.863008 | 3.381671e-64 | -8.615850e-47 |
| Msa1368240 | Msa1391170 | 0.850666 | 1.465082e-60 | -8.615850e-47 |
| Msa1368240 | Msa1391220 | 0.824771 | 6.736193e-54 | -8.615850e-47 |
| Msa1368240 | Msa1391230 | 0.820924 | 5.304329e-53 | -8.615850e-47 |
| Msa1368240 | Msa1391240 | 0.932356 | 9.628609e-95 | -8.615850e-47 |
| Msa1368240 | Msa1394030 | 0.850634 | 1.496241e-60 | -8.615850e-47 |
| Msa1368240 | Msa1394040 | 0.823882 | 1.090239e-53 | -8.615850e-47 |
| Msa1368240 | Msa1394080 | 0.808425 | 3.116827e-50 | -8.615850e-47 |
| Msa1368240 | Msa1394150 | 0.803968 | 2.705381e-49 | -8.615850e-47 |
| Msa1368240 | Msa1394160 | 0.841738 | 3.961640e-58 | -8.615850e-47 |
| Msa1368240 | Msa1394210 | 0.832268 | 1.041616e-55 | -8.615850e-47 |
| Msa1368240 | Msa1394270 | 0.800095 | 1.692208e-48 | -8.615850e-47 |
| Msa1368240 | Msa1460120 | 0.842488 | 2.507654e-58 | -8.615850e-47 |
| Msa1368240 | Msa1460130 | 0.850143 | 2.054835e-60 | -8.615850e-47 |
| Msa0202640 | Msa1368240 | 0.840216 | 9.938522e-58 | -8.615850e-47 |
| Msa1305090 | Msa1368240 | 0.813437 | 2.561408e-51 | -8.615850e-47 |
| Msa0405420 | Msa1368240 | 0.826682 | 2.372220e-54 | -8.615850e-47 |
| Msa0405430 | Msa1368240 | 0.850170 | 2.018743e-60 | -8.615850e-47 |
| Msa0405440 | Msa1368240 | 0.925241 | 2.394437e-90 | -8.615850e-47 |
| Msa0405510 | Msa1368240 | 0.824940 | 6.148600e-54 | -8.615850e-47 |
| Msa0405520 | Msa1368240 | 0.842897 | 1.952616e-58 | -8.615850e-47 |
| Msa0405530 | Msa1368240 | 0.929092 | 1.140251e-92 | -8.615850e-47 |
| Msa0983630 | Msa1368240 | 0.866752 | 2.265626e-65 | -8.615850e-47 |
| Msa0983640 | Msa1368240 | 0.838715 | 2.439183e-57 | -8.615850e-47 |
| Msa1022050 | Msa1368240 | 0.892606 | 1.359900e-74 | -8.615850e-47 |
| Msa1022060 | Msa1368240 | 0.833266 | 5.886815e-56 | -8.615850e-47 |
| Msa1064410 | Msa1368240 | 0.837113 | 6.293910e-57 | -8.615850e-47 |
| Msa1086090 | Msa1368240 | 0.834781 | 2.457973e-56 | -8.615850e-47 |
| Msa1086140 | Msa1368240 | 0.840819 | 6.908488e-58 | -8.615850e-47 |
| Msa1086190 | Msa1368240 | 0.810673 | 1.025237e-50 | -8.615850e-47 |
| Msa1086200 | Msa1368240 | 0.844987 | 5.379023e-59 | -8.615850e-47 |
| Msa1086270 | Msa1368240 | 0.823557 | 1.299371e-53 | -8.615850e-47 |
| Msa1086320 | Msa1368240 | 0.816144 | 6.432335e-52 | -8.615850e-47 |
| Msa1086510 | Msa1368240 | 0.817194 | 3.742560e-52 | -8.615850e-47 |
| Msa1086550 | Msa1368240 | 0.820633 | 6.187685e-53 | -8.615850e-47 |
| Msa1086600 | Msa1368240 | 0.861688 | 8.605789e-64 | -8.615850e-47 |
| Msa1086680 | Msa1368240 | 0.806771 | 6.997032e-50 | -8.615850e-47 |
| Msa1086720 | Msa1368240 | 0.848576 | 5.611679e-60 | -8.615850e-47 |
| Msa1086730 | Msa1368240 | 0.863552 | 2.294297e-64 | -8.615850e-47 |
| Msa1086740 | Msa1368240 | 0.939618 | 9.386424e-100 | -8.615850e-47 |
| Msa1086790 | Msa1368240 | 0.898642 | 4.345748e-77 | -8.615850e-47 |
| Msa1086800 | Msa1368240 | 0.844550 | 7.055110e-59 | -8.615850e-47 |
| Msa1086900 | Msa1368240 | 0.837318 | 5.579292e-57 | -8.615850e-47 |
| Msa1086960 | Msa1368240 | 0.909050 | 8.734646e-82 | -8.615850e-47 |
| Msa1086970 | Msa1368240 | 0.831693 | 1.444070e-55 | -8.615850e-47 |
| Msa1087030 | Msa1368240 | 0.848676 | 5.265307e-60 | -8.615850e-47 |
| Msa1087040 | Msa1368240 | 0.839925 | 1.183456e-57 | -8.615850e-47 |
| Msa1087050 | Msa1368240 | 0.935963 | 3.699836e-97 | -8.615850e-47 |
| Msa1087110 | Msa1368240 | 0.912532 | 1.749665e-83 | -8.615850e-47 |
| Msa1087120 | Msa1368240 | 0.829247 | 5.727165e-55 | -8.615850e-47 |
| Msa0263770 | Msa1368240 | 0.875813 | 2.290988e-68 | -8.615850e-47 |
| Msa0268190 | Msa1368240 | 0.803050 | 4.194440e-49 | -8.615850e-47 |
| Msa0268210 | Msa1368240 | 0.831840 | 1.329019e-55 | -8.615850e-47 |
| Msa0268250 | Msa1368240 | 0.849467 | 3.173156e-60 | -8.615850e-47 |
| Msa0268260 | Msa1368240 | 0.829529 | 4.891815e-55 | -8.615850e-47 |
| Msa0268270 | Msa1368240 | 0.918293 | 1.864225e-86 | -8.615850e-47 |
| Msa0268300 | Msa1368240 | 0.853359 | 2.517830e-61 | -8.615850e-47 |
| Msa0268310 | Msa1368240 | 0.829026 | 6.481340e-55 | -8.615850e-47 |
| Msa0268430 | Msa1368240 | 0.815480 | 9.048761e-52 | -8.615850e-47 |
| Msa0268450 | Msa1368240 | 0.824800 | 6.633882e-54 | -8.615850e-47 |
| Msa0268560 | Msa1368240 | 0.810288 | 1.241907e-50 | -8.615850e-47 |
| Msa0268570 | Msa1368240 | 0.830301 | 3.172259e-55 | -8.615850e-47 |
| Msa0268630 | Msa1368240 | 0.812897 | 3.365102e-51 | -8.615850e-47 |
| Msa0268670 | Msa1368240 | 0.825630 | 4.221290e-54 | -8.615850e-47 |
| Msa0268740 | Msa1368240 | 0.806479 | 8.062868e-50 | -8.615850e-47 |
| Msa0268750 | Msa1368240 | 0.841056 | 5.988089e-58 | -8.615850e-47 |
| Msa0268830 | Msa1368240 | 0.844706 | 6.402846e-59 | -8.615850e-47 |
| Msa0268860 | Msa1368240 | 0.809709 | 1.654723e-50 | -8.615850e-47 |
| Msa0268880 | Msa1368240 | 0.825362 | 4.885268e-54 | -8.615850e-47 |
| Msa0268950 | Msa1368240 | 0.816361 | 5.753469e-52 | -8.615850e-47 |
| Msa0268960 | Msa1368240 | 0.840538 | 8.188323e-58 | -8.615850e-47 |
| Msa0269040 | Msa1368240 | 0.837660 | 4.558930e-57 | -8.615850e-47 |
| Msa0269070 | Msa1368240 | 0.808059 | 3.730381e-50 | -8.615850e-47 |
| Msa0269130 | Msa1368240 | 0.831195 | 1.915772e-55 | -8.615850e-47 |
| Msa0269140 | Msa1368240 | 0.845740 | 3.364352e-59 | -8.615850e-47 |
| Msa0269150 | Msa1368240 | 0.953926 | 9.309888e-112 | -8.615850e-47 |
| Msa0344180 | Msa1368240 | 0.800942 | 1.137519e-48 | -8.615850e-47 |
| Msa0344190 | Msa1368240 | 0.805103 | 1.569291e-49 | -8.615850e-47 |
| Msa0344310 | Msa1368240 | 0.822183 | 2.714505e-53 | -8.615850e-47 |
| Msa1143120 | Msa1368240 | 0.832735 | 7.978032e-56 | -8.615850e-47 |
| Msa1143170 | Msa1368240 | 0.830964 | 2.183297e-55 | -8.615850e-47 |
| Msa0484040 | Msa1368240 | 0.807883 | 4.066583e-50 | -8.615850e-47 |
| Msa0582510 | Msa1368240 | 0.833951 | 3.970845e-56 | -8.615850e-47 |
| Msa0582540 | Msa1368240 | 0.802777 | 4.775728e-49 | -8.615850e-47 |
| Msa0582640 | Msa1368240 | 0.801521 | 8.656714e-49 | -8.615850e-47 |
| Msa0582650 | Msa1368240 | 0.831063 | 2.063510e-55 | -8.615850e-47 |
| Msa0582690 | Msa1368240 | 0.843134 | 1.688886e-58 | -8.615850e-47 |
| Msa0582730 | Msa1368240 | 0.808936 | 2.424632e-50 | -8.615850e-47 |
| Msa0582760 | Msa1368240 | 0.814114 | 1.817035e-51 | -8.615850e-47 |
| Msa0582770 | Msa1368240 | 0.834797 | 2.434874e-56 | -8.615850e-47 |
| Msa0582810 | Msa1368240 | 0.839037 | 2.012756e-57 | -8.615850e-47 |
| Msa0582910 | Msa1368240 | 0.810643 | 1.041043e-50 | -8.615850e-47 |
| Msa0582920 | Msa1368240 | 0.844373 | 7.869300e-59 | -8.615850e-47 |
| Msa0591290 | Msa1368240 | 0.809603 | 1.743562e-50 | -8.615850e-47 |
| Msa0591310 | Msa1368240 | 0.859342 | 4.419526e-63 | -8.615850e-47 |
| Msa0591350 | Msa1368240 | 0.882139 | 1.338033e-70 | -8.615850e-47 |
| Msa0591360 | Msa1368240 | 0.849155 | 3.877127e-60 | -8.615850e-47 |
| Msa0591380 | Msa1368240 | 0.830752 | 2.460476e-55 | -8.615850e-47 |
| Msa0867680 | Msa1368240 | 0.863173 | 3.006370e-64 | -8.615850e-47 |
| Msa0867690 | Msa1368240 | 0.854872 | 9.214370e-62 | -8.615850e-47 |
| Msa0876520 | Msa1368240 | 0.848621 | 5.452626e-60 | -8.615850e-47 |
| Msa0908220 | Msa1368240 | 0.835287 | 1.832079e-56 | -8.615850e-47 |
| Msa0908230 | Msa1368240 | 0.851685 | 7.552715e-61 | -8.615850e-47 |
| Msa0908240 | Msa1368240 | 0.937615 | 2.595498e-98 | -8.615850e-47 |
| Msa0908310 | Msa1368240 | 0.899884 | 1.272927e-77 | -8.615850e-47 |
| Msa0908320 | Msa1368240 | 0.841395 | 4.877049e-58 | -8.615850e-47 |
| Msa0908370 | Msa1368240 | 0.891815 | 2.814623e-74 | -8.615850e-47 |
| Msa0908380 | Msa1368240 | 0.833611 | 4.828884e-56 | -8.615850e-47 |
| Msa0908430 | Msa1368240 | 0.846189 | 2.538518e-59 | -8.615850e-47 |
| Msa0908440 | Msa1368240 | 0.867736 | 1.098074e-65 | -8.615850e-47 |
| Msa0908450 | Msa1368240 | 0.938479 | 6.292595e-99 | -8.615850e-47 |
| Msa0908480 | Msa1368240 | 0.853162 | 2.866620e-61 | -8.615850e-47 |
| Msa0908530 | Msa1368240 | 0.892692 | 1.255081e-74 | -8.615850e-47 |
| Msa0908540 | Msa1368240 | 0.848148 | 7.370108e-60 | -8.615850e-47 |
| Msa0908590 | Msa1368240 | 0.846527 | 2.053489e-59 | -8.615850e-47 |
| Msa0908600 | Msa1368240 | 0.834746 | 2.507708e-56 | -8.615850e-47 |
| Msa0908610 | Msa1368240 | 0.919678 | 3.333315e-87 | -8.615850e-47 |
| Msa0908650 | Msa1368240 | 0.839003 | 2.054869e-57 | -8.615850e-47 |
| Msa0908660 | Msa1368240 | 0.828254 | 9.957200e-55 | -8.615850e-47 |
| Msa0908670 | Msa1368240 | 0.933515 | 1.669674e-95 | -8.615850e-47 |
| Msa0908720 | Msa1368240 | 0.887548 | 1.294919e-72 | -8.615850e-47 |
| Msa0908730 | Msa1368240 | 0.844072 | 9.482468e-59 | -8.615850e-47 |
| Msa0911190 | Msa1368240 | 0.903391 | 3.641054e-79 | -8.615850e-47 |
| Msa0911200 | Msa1368240 | 0.807645 | 4.567325e-50 | -8.615850e-47 |
| Msa0911230 | Msa1368240 | 0.877562 | 5.688810e-69 | -8.615850e-47 |
| Msa0924830 | Msa1368240 | 0.833612 | 4.824965e-56 | -8.615850e-47 |
| Msa0924880 | Msa1368240 | 0.838843 | 2.259666e-57 | -8.615850e-47 |
| Msa0924920 | Msa1368240 | 0.864032 | 1.628040e-64 | -8.615850e-47 |
| Msa0924930 | Msa1368240 | 0.838273 | 3.171702e-57 | -8.615850e-47 |
| Msa0924940 | Msa1368240 | 0.850097 | 2.116513e-60 | -8.615850e-47 |
| Msa0925100 | Msa1368240 | 0.901496 | 2.526446e-78 | -8.615850e-47 |
| Msa0925110 | Msa1368240 | 0.860685 | 1.739062e-63 | -8.615850e-47 |
| Msa0931070 | Msa1368240 | 0.818009 | 2.451680e-52 | -8.615850e-47 |
| Msa0931130 | Msa1368240 | 0.825922 | 3.598706e-54 | -8.615850e-47 |
| Msa0931220 | Msa1368240 | 0.808540 | 2.945429e-50 | -8.615850e-47 |
| Msa0931230 | Msa1368240 | 0.832429 | 9.500918e-56 | -8.615850e-47 |
| Msa0931260 | Msa1368240 | 0.839819 | 1.261241e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368240 | MtrunA17_Chr7g0234981 | 88.636 | 88 | 10 | 0 | 70 | 157 | 6 | 93 | 2.85e-50 | 156 |
| Msa1368240 | MtrunA17_MTg0491661 | 67.470 | 83 | 27 | 0 | 75 | 157 | 41 | 123 | 8.51e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368240 | ATCG00905.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1368240 | ATCG01230.1 | 98.824 | 85 | 1 | 0 | 73 | 157 | 1 | 85 | 1.03e-55 | 170 |
| Msa1368240 | AT2G07675.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
| Msa1368240 | ATMG00980.1 | 48.462 | 130 | 58 | 1 | 28 | 157 | 3 | 123 | 1.22e-34 | 118 |
Find 39 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCTAAAATAATTTATTT+TGG | 0.180484 | tig0018631:+1432 | None:intergenic |
| CAACAAGGTCGTTCTAAATA+TGG | 0.216871 | tig0018631:-1465 | Msa1368240:CDS |
| CAGAATGTTCTTGTAAATTA+TGG | 0.231614 | tig0018631:+1583 | None:intergenic |
| CTCGCCCCACAGCGACAAAA+TGG | 0.328779 | tig0018631:-2427 | Msa1368240:CDS |
| CCTTTACTCCGACAGCATCT+AGG | 0.372692 | tig0018631:+1493 | None:intergenic |
| ACTTTACGTAAGGCAGAGTT+TGG | 0.377633 | tig0018631:+1663 | None:intergenic |
| AACAAGGTCGTTCTAAATAT+GGG | 0.408379 | tig0018631:-1464 | Msa1368240:CDS |
| CATATTTAGAACGACCTTGT+TGG | 0.411865 | tig0018631:+1466 | None:intergenic |
| TTGTAAATTATGGCCAATAC+CGG | 0.438557 | tig0018631:+1593 | None:intergenic |
| CATTCTGTAGTCTTAGTAAG+AGG | 0.441296 | tig0018631:-1567 | Msa1368240:CDS |
| TATCACTACAACAAGCATAA+TGG | 0.443035 | tig0018631:-2633 | Msa1368240:intron |
| AACTCCAGTTACTTCGCAAA+TGG | 0.476097 | tig0018631:+2759 | None:intergenic |
| GCCAGAGTACGCTTAACCTC+TGG | 0.485872 | tig0018631:-1639 | Msa1368240:CDS |
| TCGCTGTGGGGCGAGGAGAA+AGG | 0.489722 | tig0018631:+2435 | None:intergenic |
| ACTGCTTATATACCCGGTAT+TGG | 0.491318 | tig0018631:-1606 | Msa1368240:CDS |
| GATCGTTGGCACAAGAAAGA+AGG | 0.502174 | tig0018631:+2785 | None:intergenic |
| CTTTACTCCGACAGCATCTA+GGG | 0.502834 | tig0018631:+1494 | None:intergenic |
| CCTAGATGCTGTCGGAGTAA+AGG | 0.506750 | tig0018631:-1493 | Msa1368240:CDS |
| TTCGCAAATGGTAAGATCGT+TGG | 0.515541 | tig0018631:+2771 | None:intergenic |
| AAATGGATAAATCAGAACTA+AGG | 0.516319 | tig0018631:-2827 | Msa1368240:CDS |
| AGAACTAAGGCAAGATGAGA+TGG | 0.530899 | tig0018631:-2814 | Msa1368240:CDS |
| TACTCTGGCAACTTTACGTA+AGG | 0.546111 | tig0018631:+1653 | None:intergenic |
| ATTCTGTAGTCTTAGTAAGA+GGG | 0.565369 | tig0018631:-1566 | Msa1368240:CDS |
| GGTTCTGTAGAGTGGCAGTA+AGG | 0.572203 | tig0018631:-1727 | Msa1368240:intron |
| TCCAGAGGTTAAGCGTACTC+TGG | 0.572579 | tig0018631:+1638 | None:intergenic |
| GAAATCACTGCTTATATACC+CGG | 0.578898 | tig0018631:-1612 | Msa1368240:CDS |
| GTGAGATATCACATTGTTCG+AGG | 0.586809 | tig0018631:-1519 | Msa1368240:CDS |
| ATCGTTGGCACAAGAAAGAA+GGG | 0.587101 | tig0018631:+2786 | None:intergenic |
| ACAGCGACAAAATGGAAGAC+TGG | 0.588097 | tig0018631:-2419 | Msa1368240:intron |
| TTCTGTAGTCTTAGTAAGAG+GGG | 0.592028 | tig0018631:-1565 | Msa1368240:CDS |
| GGAGTAAAGGATCGCCAACA+AGG | 0.599055 | tig0018631:-1480 | Msa1368240:CDS |
| TGTAAATTATGGCCAATACC+GGG | 0.601960 | tig0018631:+1594 | None:intergenic |
| CGAGGAACCCTAGATGCTGT+CGG | 0.617344 | tig0018631:-1501 | Msa1368240:CDS |
| AGCAGTGATTTCAAATCCAG+AGG | 0.620729 | tig0018631:+1623 | None:intergenic |
| GCGAGGAGAAAGGCAGCAAG+AGG | 0.621301 | tig0018631:+2445 | None:intergenic |
| ACAAGGTCGTTCTAAATATG+GGG | 0.627597 | tig0018631:-1463 | Msa1368240:CDS |
| GGAAGGGTTAAGGATTTACC+TGG | 0.642987 | tig0018631:-1543 | Msa1368240:CDS |
| TCTGTAGTCTTAGTAAGAGG+GGG | 0.664205 | tig0018631:-1564 | Msa1368240:CDS |
| ACAATGTGATATCTCACACC+AGG | 0.678462 | tig0018631:+1525 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0018631:1590-1609 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0018631:1591-1610 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0018631:1594-1613 | Msa1368240:CDS | 10.0% |
| !!! | AAAAAAATTTACATTTTTCA+GGG | + | tig0018631:1590-1609 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTACATTTTTC+AGG | + | tig0018631:1591-1610 | None:intergenic | 10.0% |
| !!! | AAATGTAAATTTTTTTTCTT+AGG | - | tig0018631:1594-1613 | Msa1368240:CDS | 10.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0018631:2030-2049 | Msa1368240:intron | 15.0% |
| !! | CATAGAATAGAAAATATTAA+TGG | - | tig0018631:2030-2049 | Msa1368240:intron | 15.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0018631:1772-1791 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0018631:2391-2410 | Msa1368240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0018631:2436-2455 | Msa1368240:CDS | 20.0% |
| !!! | TTAATATACAACATAGGTTT+TGG | + | tig0018631:1772-1791 | None:intergenic | 20.0% |
| !!! | AAAAAAGAAAAGTGTTCAAT+TGG | - | tig0018631:2391-2410 | Msa1368240:intron | 20.0% |
| !!! | AATTACTTCTCGTTATTTTT+CGG | - | tig0018631:2436-2455 | Msa1368240:CDS | 20.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0018631:1549-1568 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0018631:1550-1569 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0018631:1670-1689 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0018631:1671-1690 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0018631:1672-1691 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0018631:1773-1792 | Msa1368240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0018631:1778-1797 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0018631:1915-1934 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0018631:2138-2157 | Msa1368240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0018631:2214-2233 | Msa1368240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0018631:2215-2234 | Msa1368240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0018631:2282-2301 | Msa1368240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0018631:2292-2311 | Msa1368240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0018631:2355-2374 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0018631:2437-2456 | Msa1368240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0018631:2491-2510 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0018631:2691-2710 | None:intergenic | 25.0% |
| !!! | CACATAAGAACTTTTAGAAT+GGG | + | tig0018631:1549-1568 | None:intergenic | 25.0% |
| !!! | ACACATAAGAACTTTTAGAA+TGG | + | tig0018631:1550-1569 | None:intergenic | 25.0% |
| ! | TTACAAATTCTGTGTTAATG+GGG | + | tig0018631:1670-1689 | None:intergenic | 25.0% |
| ! | GTTACAAATTCTGTGTTAAT+GGG | + | tig0018631:1671-1690 | None:intergenic | 25.0% |
| ! | AGTTACAAATTCTGTGTTAA+TGG | + | tig0018631:1672-1691 | None:intergenic | 25.0% |
| ! | AACCTATGTTGTATATTAAG+AGG | - | tig0018631:1773-1792 | Msa1368240:intron | 25.0% |
| ! | AACCTCTTAATATACAACAT+AGG | + | tig0018631:1778-1797 | None:intergenic | 25.0% |
| ! | TAGTATTTAGTTAGTGATCT+CGG | + | tig0018631:1915-1934 | None:intergenic | 25.0% |
| !! | GATAGATATCTTTTCAACAT+AGG | - | tig0018631:2138-2157 | Msa1368240:intron | 25.0% |
| ! | AAAAAGGATTCCTATTCTAA+AGG | - | tig0018631:2214-2233 | Msa1368240:intron | 25.0% |
| ! | AAAAGGATTCCTATTCTAAA+GGG | - | tig0018631:2215-2234 | Msa1368240:intron | 25.0% |
| !!! | ATCCAATTGGGATTTTATTT+AGG | - | tig0018631:2282-2301 | Msa1368240:intron | 25.0% |
| !!! | GATTTTATTTAGGAGGTATT+GGG | - | tig0018631:2292-2311 | Msa1368240:intron | 25.0% |
| !! | GAAGATTATTCTTTTTCTTC+TGG | + | tig0018631:2355-2374 | None:intergenic | 25.0% |
| !!! | ATTACTTCTCGTTATTTTTC+GGG | - | tig0018631:2437-2456 | Msa1368240:CDS | 25.0% |
| ! | TTCAATTCTTTCGAAGTAAT+TGG | + | tig0018631:2491-2510 | None:intergenic | 25.0% |
| ! | CAGAATGTTCTTGTAAATTA+TGG | + | tig0018631:2691-2710 | None:intergenic | 25.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0018631:1544-1563 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0018631:1584-1603 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0018631:1638-1657 | Msa1368240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0018631:1715-1734 | Msa1368240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0018631:2271-2290 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0018631:2272-2291 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0018631:2270-2289 | Msa1368240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0018631:2287-2306 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0018631:2285-2304 | Msa1368240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0018631:2291-2310 | Msa1368240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0018631:2681-2700 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0018631:2705-2724 | Msa1368240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0018631:2807-2826 | Msa1368240:CDS | 30.0% |
| !!! | AAGAACTTTTAGAATGGGAA+TGG | + | tig0018631:1544-1563 | None:intergenic | 30.0% |
| !!! | ATTTACATTTTTCAGGGTCT+CGG | + | tig0018631:1584-1603 | None:intergenic | 30.0% |
| TATCACTACAACAAGCATAA+TGG | - | tig0018631:1638-1657 | Msa1368240:CDS | 30.0% | |
| AGTGAAAAGGATGATTCATT+CGG | - | tig0018631:1715-1734 | Msa1368240:CDS | 30.0% | |
| ! | CAATTGGATCTAAAATTGAC+GGG | + | tig0018631:2271-2290 | None:intergenic | 30.0% |
| ! | CCAATTGGATCTAAAATTGA+CGG | + | tig0018631:2272-2291 | None:intergenic | 30.0% |
| ! | CGTCAATTTTAGATCCAATT+GGG | - | tig0018631:2270-2289 | Msa1368240:intron | 30.0% |
| CTCCTAAATAAAATCCCAAT+TGG | + | tig0018631:2287-2306 | None:intergenic | 30.0% | |
| !! | CAATTGGGATTTTATTTAGG+AGG | - | tig0018631:2285-2304 | Msa1368240:intron | 30.0% |
| !! | GGATTTTATTTAGGAGGTAT+TGG | - | tig0018631:2291-2310 | Msa1368240:intron | 30.0% |
| TTGTAAATTATGGCCAATAC+CGG | + | tig0018631:2681-2700 | None:intergenic | 30.0% | |
| ! | ATTCTGTAGTCTTAGTAAGA+GGG | - | tig0018631:2705-2724 | Msa1368240:intron | 30.0% |
| ! | AACAAGGTCGTTCTAAATAT+GGG | - | tig0018631:2807-2826 | Msa1368240:CDS | 30.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0018631:1583-1602 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0018631:1702-1721 | Msa1368240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0018631:1708-1727 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0018631:1806-1825 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0018631:2069-2088 | Msa1368240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0018631:2097-2116 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0018631:2269-2288 | Msa1368240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0018631:2493-2512 | Msa1368240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0018631:2521-2540 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0018631:2523-2542 | Msa1368240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0018631:2591-2610 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0018631:2601-2620 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0018631:2602-2621 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0018631:2659-2678 | Msa1368240:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0018631:2680-2699 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0018631:2704-2723 | Msa1368240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0018631:2706-2725 | Msa1368240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0018631:2808-2827 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0018631:2806-2825 | Msa1368240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0018631:2808-2827 | Msa1368240:CDS | 35.0% |
| !!! | TTTACATTTTTCAGGGTCTC+GGG | + | tig0018631:1583-1602 | None:intergenic | 35.0% |
| TTGCCTAGTATTCAGTGAAA+AGG | - | tig0018631:1702-1721 | Msa1368240:CDS | 35.0% | |
| ! | CATCCTTTTCACTGAATACT+AGG | + | tig0018631:1708-1727 | None:intergenic | 35.0% |
| ATTGTACCATCCTAAAAGCA+AGG | + | tig0018631:1806-1825 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGTATACTCTCTC+TGG | - | tig0018631:2069-2088 | Msa1368240:intron | 35.0% |
| TGTAAAGCGTGTGATAGTAA+CGG | + | tig0018631:2097-2116 | None:intergenic | 35.0% | |
| ! | CCGTCAATTTTAGATCCAAT+TGG | - | tig0018631:2269-2288 | Msa1368240:intron | 35.0% |
| TACTTCGAAAGAATTGAACG+AGG | - | tig0018631:2493-2512 | Msa1368240:intron | 35.0% | |
| ! | CATGAGATTTTCACCTCATA+CGG | + | tig0018631:2521-2540 | None:intergenic | 35.0% |
| TGAGGTGAAAATCTCATGTA+CGG | - | tig0018631:2523-2542 | Msa1368240:intron | 35.0% | |
| !!! | TGGTTTTTTAGGGGTAATAG+TGG | + | tig0018631:2591-2610 | None:intergenic | 35.0% |
| !!! | AGGCAGAGTTTGGTTTTTTA+GGG | + | tig0018631:2601-2620 | None:intergenic | 35.0% |
| !!! | AAGGCAGAGTTTGGTTTTTT+AGG | + | tig0018631:2602-2621 | None:intergenic | 35.0% |
| GAAATCACTGCTTATATACC+CGG | - | tig0018631:2659-2678 | Msa1368240:intron | 35.0% | |
| TGTAAATTATGGCCAATACC+GGG | + | tig0018631:2680-2699 | None:intergenic | 35.0% | |
| ! | CATTCTGTAGTCTTAGTAAG+AGG | - | tig0018631:2704-2723 | Msa1368240:intron | 35.0% |
| ! | TTCTGTAGTCTTAGTAAGAG+GGG | - | tig0018631:2706-2725 | Msa1368240:intron | 35.0% |
| ! | CATATTTAGAACGACCTTGT+TGG | + | tig0018631:2808-2827 | None:intergenic | 35.0% |
| ! | CAACAAGGTCGTTCTAAATA+TGG | - | tig0018631:2806-2825 | Msa1368240:CDS | 35.0% |
| ! | ACAAGGTCGTTCTAAATATG+GGG | - | tig0018631:2808-2827 | Msa1368240:CDS | 35.0% |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0018631:1457-1476 | Msa1368240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0018631:1488-1507 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0018631:1503-1522 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0018631:1508-1527 | Msa1368240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0018631:1515-1534 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0018631:1582-1601 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0018631:1701-1720 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0018631:1755-1774 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0018631:1759-1778 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0018631:1880-1899 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0018631:1879-1898 | Msa1368240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0018631:2227-2246 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0018631:2248-2267 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0018631:2441-2460 | Msa1368240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0018631:2600-2619 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0018631:2611-2630 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0018631:2621-2640 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0018631:2651-2670 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0018631:2665-2684 | Msa1368240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0018631:2707-2726 | Msa1368240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0018631:2749-2768 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0018631:2752-2771 | Msa1368240:intron | 40.0% | |
| AGAACTAAGGCAAGATGAGA+TGG | - | tig0018631:1457-1476 | Msa1368240:CDS | 40.0% | |
| ATCGTTGGCACAAGAAAGAA+GGG | + | tig0018631:1488-1507 | None:intergenic | 40.0% | |
| TTCGCAAATGGTAAGATCGT+TGG | + | tig0018631:1503-1522 | None:intergenic | 40.0% | |
| CTTACCATTTGCGAAGTAAC+TGG | - | tig0018631:1508-1527 | Msa1368240:CDS | 40.0% | |
| AACTCCAGTTACTTCGCAAA+TGG | + | tig0018631:1515-1534 | None:intergenic | 40.0% | |
| !!! | TTACATTTTTCAGGGTCTCG+GGG | + | tig0018631:1582-1601 | None:intergenic | 40.0% |
| TTCACTGAATACTAGGCAAG+AGG | + | tig0018631:1701-1720 | None:intergenic | 40.0% | |
| ! | TTTTGGCAATGCAATGTGGT+TGG | + | tig0018631:1755-1774 | None:intergenic | 40.0% |
| !! | TAGGTTTTGGCAATGCAATG+TGG | + | tig0018631:1759-1778 | None:intergenic | 40.0% |
| TTTCTTGCGTGATGAACTGT+TGG | + | tig0018631:1880-1899 | None:intergenic | 40.0% | |
| AACAGTTCATCACGCAAGAA+AGG | - | tig0018631:1879-1898 | Msa1368240:intron | 40.0% | |
| !! | GGTTATGCACCCTTTAGAAT+AGG | + | tig0018631:2227-2246 | None:intergenic | 40.0% |
| TTAGTGTGAGCTTATCCATG+CGG | + | tig0018631:2248-2267 | None:intergenic | 40.0% | |
| !!! | CTTCTCGTTATTTTTCGGGA+AGG | - | tig0018631:2441-2460 | Msa1368240:CDS | 40.0% |
| !!! | GGCAGAGTTTGGTTTTTTAG+GGG | + | tig0018631:2600-2619 | None:intergenic | 40.0% |
| ACTTTACGTAAGGCAGAGTT+TGG | + | tig0018631:2611-2630 | None:intergenic | 40.0% | |
| TACTCTGGCAACTTTACGTA+AGG | + | tig0018631:2621-2640 | None:intergenic | 40.0% | |
| AGCAGTGATTTCAAATCCAG+AGG | + | tig0018631:2651-2670 | None:intergenic | 40.0% | |
| ACTGCTTATATACCCGGTAT+TGG | - | tig0018631:2665-2684 | Msa1368240:intron | 40.0% | |
| ! | TCTGTAGTCTTAGTAAGAGG+GGG | - | tig0018631:2707-2726 | Msa1368240:intron | 40.0% |
| ACAATGTGATATCTCACACC+AGG | + | tig0018631:2749-2768 | None:intergenic | 40.0% | |
| GTGAGATATCACATTGTTCG+AGG | - | tig0018631:2752-2771 | Msa1368240:intron | 40.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0018631:1489-1508 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0018631:1581-1600 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0018631:1793-1812 | Msa1368240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0018631:1797-1816 | Msa1368240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0018631:1803-1822 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0018631:1851-1870 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0018631:1852-1871 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0018631:1853-1872 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0018631:1852-1871 | Msa1368240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0018631:2198-2217 | Msa1368240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0018631:2302-2321 | Msa1368240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0018631:2446-2465 | Msa1368240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0018631:2463-2482 | Msa1368240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0018631:2536-2555 | Msa1368240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0018631:2711-2730 | Msa1368240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0018631:2712-2731 | Msa1368240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0018631:2728-2747 | Msa1368240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0018631:2780-2799 | None:intergenic | 45.0% | |
| GATCGTTGGCACAAGAAAGA+AGG | + | tig0018631:1489-1508 | None:intergenic | 45.0% | |
| !!! | TACATTTTTCAGGGTCTCGG+GGG | + | tig0018631:1581-1600 | None:intergenic | 45.0% |
| !! | AGGTTGACCTCCTTGCTTTT+AGG | - | tig0018631:1793-1812 | Msa1368240:intron | 45.0% |
| !! | TGACCTCCTTGCTTTTAGGA+TGG | - | tig0018631:1797-1816 | Msa1368240:intron | 45.0% |
| GTACCATCCTAAAAGCAAGG+AGG | + | tig0018631:1803-1822 | None:intergenic | 45.0% | |
| ! | TCTTCCATTTTGTCGCTGTG+GGG | + | tig0018631:1851-1870 | None:intergenic | 45.0% |
| ! | GTCTTCCATTTTGTCGCTGT+GGG | + | tig0018631:1852-1871 | None:intergenic | 45.0% |
| ! | AGTCTTCCATTTTGTCGCTG+TGG | + | tig0018631:1853-1872 | None:intergenic | 45.0% |
| ACAGCGACAAAATGGAAGAC+TGG | - | tig0018631:1852-1871 | Msa1368240:intron | 45.0% | |
| AGCGGGGATCTTTCACAAAA+AGG | - | tig0018631:2198-2217 | Msa1368240:intron | 45.0% | |
| !! | AGGAGGTATTGGGAACGAAT+TGG | - | tig0018631:2302-2321 | Msa1368240:intron | 45.0% |
| !!! | CGTTATTTTTCGGGAAGGAG+TGG | - | tig0018631:2446-2465 | Msa1368240:CDS | 45.0% |
| GAGTGGAGATTATCGAACGA+AGG | - | tig0018631:2463-2482 | Msa1368240:intron | 45.0% | |
| TCATGTACGGTTCTGTAGAG+TGG | - | tig0018631:2536-2555 | Msa1368240:intron | 45.0% | |
| ! | TAGTCTTAGTAAGAGGGGGA+AGG | - | tig0018631:2711-2730 | Msa1368240:intron | 45.0% |
| AGTCTTAGTAAGAGGGGGAA+GGG | - | tig0018631:2712-2731 | Msa1368240:intron | 45.0% | |
| GGAAGGGTTAAGGATTTACC+TGG | - | tig0018631:2728-2747 | Msa1368240:intron | 45.0% | |
| CTTTACTCCGACAGCATCTA+GGG | + | tig0018631:2780-2799 | None:intergenic | 45.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0018631:1580-1599 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0018631:2230-2249 | Msa1368240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0018631:2505-2524 | Msa1368240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0018631:2544-2563 | Msa1368240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0018631:2636-2655 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0018631:2718-2737 | Msa1368240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0018631:2781-2800 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0018631:2778-2797 | Msa1368240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0018631:2791-2810 | Msa1368240:CDS | 50.0% | |
| !!! | ACATTTTTCAGGGTCTCGGG+GGG | + | tig0018631:1580-1599 | None:intergenic | 50.0% |
| ! | CTAAAGGGTGCATAACCGCA+TGG | - | tig0018631:2230-2249 | Msa1368240:intron | 50.0% |
| ATTGAACGAGGAGCCGTATG+AGG | - | tig0018631:2505-2524 | Msa1368240:intron | 50.0% | |
| GGTTCTGTAGAGTGGCAGTA+AGG | - | tig0018631:2544-2563 | Msa1368240:intron | 50.0% | |
| TCCAGAGGTTAAGCGTACTC+TGG | + | tig0018631:2636-2655 | None:intergenic | 50.0% | |
| AGTAAGAGGGGGAAGGGTTA+AGG | - | tig0018631:2718-2737 | Msa1368240:intron | 50.0% | |
| CCTTTACTCCGACAGCATCT+AGG | + | tig0018631:2781-2800 | None:intergenic | 50.0% | |
| CCTAGATGCTGTCGGAGTAA+AGG | - | tig0018631:2778-2797 | Msa1368240:CDS | 50.0% | |
| GGAGTAAAGGATCGCCAACA+AGG | - | tig0018631:2791-2810 | Msa1368240:CDS | 50.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | tig0018631:1578-1597 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0018631:1579-1598 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0018631:2180-2199 | Msa1368240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0018631:2181-2200 | Msa1368240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0018631:2189-2208 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0018631:2632-2651 | Msa1368240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0018631:2770-2789 | Msa1368240:intron | 55.0% | |
| !!! | ATTTTTCAGGGTCTCGGGGG+GGG | + | tig0018631:1578-1597 | None:intergenic | 55.0% |
| !!! | CATTTTTCAGGGTCTCGGGG+GGG | + | tig0018631:1579-1598 | None:intergenic | 55.0% |
| GACCCACCAAAGCACGAAAG+CGG | - | tig0018631:2180-2199 | Msa1368240:intron | 55.0% | |
| ACCCACCAAAGCACGAAAGC+GGG | - | tig0018631:2181-2200 | Msa1368240:intron | 55.0% | |
| AGATCCCCGCTTTCGTGCTT+TGG | + | tig0018631:2189-2208 | None:intergenic | 55.0% | |
| GCCAGAGTACGCTTAACCTC+TGG | - | tig0018631:2632-2651 | Msa1368240:intron | 55.0% | |
| CGAGGAACCCTAGATGCTGT+CGG | - | tig0018631:2770-2789 | Msa1368240:intron | 55.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0018631:1829-1848 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0018631:1846-1865 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0018631:1844-1863 | Msa1368240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0018631:2185-2204 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0018631:2182-2201 | Msa1368240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0018631:2186-2205 | None:intergenic | 60.0% | |
| GCGAGGAGAAAGGCAGCAAG+AGG | + | tig0018631:1829-1848 | None:intergenic | 60.0% | |
| ! | CATTTTGTCGCTGTGGGGCG+AGG | + | tig0018631:1846-1865 | None:intergenic | 60.0% |
| CTCGCCCCACAGCGACAAAA+TGG | - | tig0018631:1844-1863 | Msa1368240:intron | 60.0% | |
| CCCCGCTTTCGTGCTTTGGT+GGG | + | tig0018631:2185-2204 | None:intergenic | 60.0% | |
| CCCACCAAAGCACGAAAGCG+GGG | - | tig0018631:2182-2201 | Msa1368240:intron | 60.0% | |
| TCCCCGCTTTCGTGCTTTGG+TGG | + | tig0018631:2186-2205 | None:intergenic | 60.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0018631:1839-1858 | None:intergenic | 65.0% | |
| TCGCTGTGGGGCGAGGAGAA+AGG | + | tig0018631:1839-1858 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018631 | gene | 1446 | 2847 | 1446 | ID=Msa1368240;Name=Msa1368240 |
| tig0018631 | mRNA | 1446 | 2847 | 1446 | ID=Msa1368240-mRNA-1;Parent=Msa1368240;Name=Msa1368240-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|157 |
| tig0018631 | exon | 2771 | 2847 | 2771 | ID=Msa1368240-mRNA-1:exon:389;Parent=Msa1368240-mRNA-1 |
| tig0018631 | exon | 2634 | 2677 | 2634 | ID=Msa1368240-mRNA-1:exon:388;Parent=Msa1368240-mRNA-1 |
| tig0018631 | exon | 2420 | 2478 | 2420 | ID=Msa1368240-mRNA-1:exon:387;Parent=Msa1368240-mRNA-1 |
| tig0018631 | exon | 1446 | 1739 | 1446 | ID=Msa1368240-mRNA-1:exon:386;Parent=Msa1368240-mRNA-1 |
| tig0018631 | CDS | 2771 | 2847 | 2771 | ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1 |
| tig0018631 | CDS | 2634 | 2677 | 2634 | ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1 |
| tig0018631 | CDS | 2420 | 2478 | 2420 | ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1 |
| tig0018631 | CDS | 1446 | 1739 | 1446 | ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
