AlfalfaGEDB | Msa1368240

M. sativa cultivar zhongmu-4 / Msa1368240

KEGG: K02950|K02992
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00164.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368240	AES69829.1	75.145	173	12	2	1	150	1	165	2.67e-75	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368240	sp\|A4GYN8\|RR12B_POPTR	95.876	97	4	0	61	157	39	135	3.89e-61	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368240	G7J101	75.145	173	12	2	1	150	1	165	1.28e-75	251

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0095150	Msa1368240	0.803588	3.245344e-49	-8.615850e-47
Msa0095230	Msa1368240	0.815044	1.130908e-51	-8.615850e-47
Msa0202640	Msa1368240	0.840216	9.938522e-58	-8.615850e-47
Msa0263770	Msa1368240	0.875813	2.290988e-68	-8.615850e-47
Msa0268190	Msa1368240	0.803050	4.194440e-49	-8.615850e-47
Msa0268210	Msa1368240	0.831840	1.329019e-55	-8.615850e-47
Msa0268250	Msa1368240	0.849467	3.173156e-60	-8.615850e-47
Msa0268260	Msa1368240	0.829529	4.891815e-55	-8.615850e-47
Msa0268270	Msa1368240	0.918293	1.864225e-86	-8.615850e-47
Msa0268300	Msa1368240	0.853359	2.517830e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368240	MtrunA17_Chr7g0234981	88.636	88	10	0	70	157	6	93	2.85e-50	156
Msa1368240	MtrunA17_MTg0491661	67.470	83	27	0	75	157	41	123	8.51e-36	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368240	ATCG00905.1	98.824	85	1	0	73	157	1	85	1.03e-55	170
Msa1368240	ATCG01230.1	98.824	85	1	0	73	157	1	85	1.03e-55	170
Msa1368240	AT2G07675.1	48.462	130	58	1	28	157	3	123	1.22e-34	118
Msa1368240	ATMG00980.1	48.462	130	58	1	28	157	3	123	1.22e-34	118

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Find 39 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGATAAATCAGAACTA+AGG	0.516319	tig0018631:-2827	Msa1368240:CDS
AACAAGGTCGTTCTAAATAT+GGG	0.408379	tig0018631:-1464	Msa1368240:CDS
AACTCCAGTTACTTCGCAAA+TGG	0.476097	tig0018631:+2759	None:intergenic
ACAAGGTCGTTCTAAATATG+GGG	0.627597	tig0018631:-1463	Msa1368240:CDS
ACAATGTGATATCTCACACC+AGG	0.678462	tig0018631:+1525	None:intergenic
ACAGCGACAAAATGGAAGAC+TGG	0.588097	tig0018631:-2419	Msa1368240:intron
ACTGCTTATATACCCGGTAT+TGG	0.491318	tig0018631:-1606	Msa1368240:CDS
ACTTTACGTAAGGCAGAGTT+TGG	0.377633	tig0018631:+1663	None:intergenic
AGAACTAAGGCAAGATGAGA+TGG	0.530899	tig0018631:-2814	Msa1368240:CDS
AGCAGTGATTTCAAATCCAG+AGG	0.620729	tig0018631:+1623	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCACTACAACAAGCATAA+TGG	-	tig0018631:1638-1657	Msa1368240:CDS	30.0%
AGTGAAAAGGATGATTCATT+CGG	-	tig0018631:1715-1734	Msa1368240:CDS	30.0%
CTCCTAAATAAAATCCCAAT+TGG	+	tig0018631:2287-2306	None:intergenic	30.0%
TTGTAAATTATGGCCAATAC+CGG	+	tig0018631:2681-2700	None:intergenic	30.0%
TATCACTACAACAAGCATAA+TGG	-	tig0018631:1638-1657	Msa1368240:CDS	30.0%
AGTGAAAAGGATGATTCATT+CGG	-	tig0018631:1715-1734	Msa1368240:CDS	30.0%
CTCCTAAATAAAATCCCAAT+TGG	+	tig0018631:2287-2306	None:intergenic	30.0%
TTGTAAATTATGGCCAATAC+CGG	+	tig0018631:2681-2700	None:intergenic	30.0%
TTGCCTAGTATTCAGTGAAA+AGG	-	tig0018631:1702-1721	Msa1368240:CDS	35.0%
ATTGTACCATCCTAAAAGCA+AGG	+	tig0018631:1806-1825	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018631	gene	1446	2847	1446	ID=Msa1368240;Name=Msa1368240
tig0018631	mRNA	1446	2847	1446	ID=Msa1368240-mRNA-1;Parent=Msa1368240;Name=Msa1368240-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|157
tig0018631	exon	2771	2847	2771	ID=Msa1368240-mRNA-1:exon:389;Parent=Msa1368240-mRNA-1
tig0018631	exon	2634	2677	2634	ID=Msa1368240-mRNA-1:exon:388;Parent=Msa1368240-mRNA-1
tig0018631	exon	2420	2478	2420	ID=Msa1368240-mRNA-1:exon:387;Parent=Msa1368240-mRNA-1
tig0018631	exon	1446	1739	1446	ID=Msa1368240-mRNA-1:exon:386;Parent=Msa1368240-mRNA-1
tig0018631	CDS	2771	2847	2771	ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1
tig0018631	CDS	2634	2677	2634	ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1
tig0018631	CDS	2420	2478	2420	ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1
tig0018631	CDS	1446	1739	1446	ID=Msa1368240-mRNA-1:cds;Parent=Msa1368240-mRNA-1

Gene Sequence

>Msa1368240

ATGGATAAATCAGAACTAAGGCAAGATGAGATGGATGAACCCTTCTTTCTTGTGCCAACGATCTTACCATTTGCGAAGAACACATATACATATAAGATTTATCACTACAACAAGCATAATGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGAGTGGCAGTAAGGATGACTTATCTGTCAACTTTTCCACTATTACCCCTAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGGTCGTTCTAAATATGGGGCAAAAAAGCCAAAATAA

Protein sequence

>Msa1368240

MDKSELRQDEMDEPFFLVPTILPFAKNTYTYKIYHYNKHNGWYNPLAAFLLAPQRQNGRLSGSKDDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGAKKPK*